Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1209560 | XP_013457758.1 | 90.336 | 714 | 34 | 2 | 1 | 679 | 1 | 714 | 0.0 | 1227 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1209560 | sp|Q8VY13|FRO8_ARATH | 47.493 | 718 | 310 | 14 | 20 | 679 | 20 | 728 | 0.0 | 639 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003030 | Msa1209560 | -0.828736 | 7.618509e-55 | -8.615850e-47 |
| Msa0029000 | Msa1209560 | -0.806763 | 7.024817e-50 | -8.615850e-47 |
| Msa0042510 | Msa1209560 | -0.810026 | 1.414362e-50 | -8.615850e-47 |
| Msa0051200 | Msa1209560 | 0.801021 | 1.095712e-48 | -8.615850e-47 |
| Msa0051460 | Msa1209560 | 0.811990 | 5.309409e-51 | -8.615850e-47 |
| Msa0077390 | Msa1209560 | 0.845467 | 3.987302e-59 | -8.615850e-47 |
| Msa0078370 | Msa1209560 | 0.811238 | 7.737136e-51 | -8.615850e-47 |
| Msa0089150 | Msa1209560 | -0.839501 | 1.525494e-57 | -8.615850e-47 |
| Msa0090280 | Msa1209560 | -0.821002 | 5.088421e-53 | -8.615850e-47 |
| Msa0093440 | Msa1209560 | 0.842496 | 2.495189e-58 | -8.615850e-47 |
| Msa0113800 | Msa1209560 | 0.805992 | 1.021336e-49 | -8.615850e-47 |
| Msa0612840 | Msa1209560 | -0.827996 | 1.148948e-54 | -8.615850e-47 |
| Msa0616560 | Msa1209560 | -0.805290 | 1.433761e-49 | -8.615850e-47 |
| Msa0621170 | Msa1209560 | -0.832431 | 9.491418e-56 | -8.615850e-47 |
| Msa0621190 | Msa1209560 | -0.826221 | 3.055893e-54 | -8.615850e-47 |
| Msa0635470 | Msa1209560 | 0.818198 | 2.221799e-52 | -8.615850e-47 |
| Msa0640380 | Msa1209560 | 0.818594 | 1.807114e-52 | -8.615850e-47 |
| Msa0641020 | Msa1209560 | 0.885917 | 5.377760e-72 | -8.615850e-47 |
| Msa0641030 | Msa1209560 | 0.854024 | 1.620980e-61 | -8.615850e-47 |
| Msa0658570 | Msa1209560 | 0.808049 | 3.748270e-50 | -8.615850e-47 |
| Msa0660870 | Msa1209560 | 0.854608 | 1.099208e-61 | -8.615850e-47 |
| Msa0678820 | Msa1209560 | 0.807816 | 4.201837e-50 | -8.615850e-47 |
| Msa0679560 | Msa1209560 | 0.873389 | 1.527802e-67 | -8.615850e-47 |
| Msa0700370 | Msa1209560 | -0.839864 | 1.227463e-57 | -8.615850e-47 |
| Msa0715720 | Msa1209560 | 0.810065 | 1.386995e-50 | -8.615850e-47 |
| Msa0716750 | Msa1209560 | 0.832619 | 8.525618e-56 | -8.615850e-47 |
| Msa0719490 | Msa1209560 | -0.820632 | 6.191095e-53 | -8.615850e-47 |
| Msa0723320 | Msa1209560 | 0.828782 | 7.423087e-55 | -8.615850e-47 |
| Msa0723330 | Msa1209560 | 0.820472 | 6.737115e-53 | -8.615850e-47 |
| Msa0723430 | Msa1209560 | 0.829729 | 4.373720e-55 | -8.615850e-47 |
| Msa0723440 | Msa1209560 | 0.817765 | 2.783198e-52 | -8.615850e-47 |
| Msa0757980 | Msa1209560 | 0.831534 | 1.580994e-55 | -8.615850e-47 |
| Msa0776030 | Msa1209560 | 0.841165 | 5.606879e-58 | -8.615850e-47 |
| Msa0799280 | Msa1209560 | 0.848307 | 6.662420e-60 | -8.615850e-47 |
| Msa0801710 | Msa1209560 | 0.802941 | 4.416578e-49 | -8.615850e-47 |
| Msa0839230 | Msa1209560 | 0.854205 | 1.436876e-61 | -8.615850e-47 |
| Msa0144560 | Msa1209560 | 0.831651 | 1.479312e-55 | -8.615850e-47 |
| Msa0146910 | Msa1209560 | -0.829998 | 3.761031e-55 | -8.615850e-47 |
| Msa0164830 | Msa1209560 | 0.817075 | 3.979864e-52 | -8.615850e-47 |
| Msa0201330 | Msa1209560 | 0.811221 | 7.801919e-51 | -8.615850e-47 |
| Msa0204210 | Msa1209560 | 0.826295 | 2.933484e-54 | -8.615850e-47 |
| Msa0225370 | Msa1209560 | 0.808369 | 3.203358e-50 | -8.615850e-47 |
| Msa0227800 | Msa1209560 | 0.803549 | 3.306539e-49 | -8.615850e-47 |
| Msa0365360 | Msa1209560 | 0.805078 | 1.588039e-49 | -8.615850e-47 |
| Msa0370480 | Msa1209560 | 0.880174 | 6.821064e-70 | -8.615850e-47 |
| Msa0377610 | Msa1209560 | -0.839718 | 1.339861e-57 | -8.615850e-47 |
| Msa0383490 | Msa1209560 | -0.810292 | 1.239540e-50 | -8.615850e-47 |
| Msa0416470 | Msa1209560 | -0.811923 | 5.490274e-51 | -8.615850e-47 |
| Msa0417960 | Msa1209560 | 0.805495 | 1.298473e-49 | -8.615850e-47 |
| Msa0426820 | Msa1209560 | -0.855468 | 6.181679e-62 | -8.615850e-47 |
| Msa0438050 | Msa1209560 | 0.806726 | 7.150784e-50 | -8.615850e-47 |
| Msa0439700 | Msa1209560 | 0.812554 | 3.999481e-51 | -8.615850e-47 |
| Msa0440040 | Msa1209560 | 0.855505 | 6.032675e-62 | -8.615850e-47 |
| Msa0443290 | Msa1209560 | 0.804347 | 2.256038e-49 | -8.615850e-47 |
| Msa0457370 | Msa1209560 | 0.856194 | 3.792348e-62 | -8.615850e-47 |
| Msa0467740 | Msa1209560 | -0.866207 | 3.376381e-65 | -8.615850e-47 |
| Msa0470230 | Msa1209560 | -0.830247 | 3.269112e-55 | -8.615850e-47 |
| Msa0996830 | Msa1209560 | -0.815381 | 9.520764e-52 | -8.615850e-47 |
| Msa0998890 | Msa1209560 | -0.873810 | 1.101645e-67 | -8.615850e-47 |
| Msa1001200 | Msa1209560 | 0.821522 | 3.862140e-53 | -8.615850e-47 |
| Msa1001210 | Msa1209560 | 0.834287 | 3.270828e-56 | -8.615850e-47 |
| Msa1008340 | Msa1209560 | 0.836300 | 1.014289e-56 | -8.615850e-47 |
| Msa1027280 | Msa1209560 | 0.824991 | 5.979523e-54 | -8.615850e-47 |
| Msa1041600 | Msa1209560 | -0.804193 | 2.430058e-49 | -8.615850e-47 |
| Msa1068200 | Msa1209560 | -0.822119 | 2.809802e-53 | -8.615850e-47 |
| Msa1068310 | Msa1209560 | -0.823908 | 1.075316e-53 | -8.615850e-47 |
| Msa1075760 | Msa1209560 | 0.828583 | 8.293211e-55 | -8.615850e-47 |
| Msa1080790 | Msa1209560 | 0.816086 | 6.628521e-52 | -8.615850e-47 |
| Msa1083410 | Msa1209560 | 0.837772 | 4.268241e-57 | -8.615850e-47 |
| Msa0241580 | Msa1209560 | 0.811045 | 8.517608e-51 | -8.615850e-47 |
| Msa0243910 | Msa1209560 | 0.803829 | 2.892131e-49 | -8.615850e-47 |
| Msa0243930 | Msa1209560 | 0.816446 | 5.507146e-52 | -8.615850e-47 |
| Msa0260270 | Msa1209560 | -0.813201 | 2.886248e-51 | -8.615850e-47 |
| Msa0261260 | Msa1209560 | 0.838624 | 2.575137e-57 | -8.615850e-47 |
| Msa0264370 | Msa1209560 | 0.830530 | 2.788939e-55 | -8.615850e-47 |
| Msa0279490 | Msa1209560 | 0.805507 | 1.291224e-49 | -8.615850e-47 |
| Msa0282590 | Msa1209560 | 0.826696 | 2.354964e-54 | -8.615850e-47 |
| Msa0299200 | Msa1209560 | 0.838596 | 2.618737e-57 | -8.615850e-47 |
| Msa0304270 | Msa1209560 | -0.824881 | 6.345548e-54 | -8.615850e-47 |
| Msa0304990 | Msa1209560 | 0.812725 | 3.669742e-51 | -8.615850e-47 |
| Msa0307510 | Msa1209560 | 0.877213 | 7.524722e-69 | -8.615850e-47 |
| Msa0330670 | Msa1209560 | 0.830328 | 3.124439e-55 | -8.615850e-47 |
| Msa0331920 | Msa1209560 | 0.811481 | 6.853650e-51 | -8.615850e-47 |
| Msa0334170 | Msa1209560 | 0.832841 | 7.508598e-56 | -8.615850e-47 |
| Msa0339380 | Msa1209560 | 0.816776 | 4.644373e-52 | -8.615850e-47 |
| Msa0362740 | Msa1209560 | 0.801218 | 9.989084e-49 | -8.615850e-47 |
| Msa1118930 | Msa1209560 | 0.810212 | 1.289373e-50 | -8.615850e-47 |
| Msa1139240 | Msa1209560 | 0.839066 | 1.979258e-57 | -8.615850e-47 |
| Msa1156340 | Msa1209560 | -0.823294 | 1.496675e-53 | -8.615850e-47 |
| Msa1165700 | Msa1209560 | -0.835955 | 1.241427e-56 | -8.615850e-47 |
| Msa1166500 | Msa1209560 | -0.802701 | 4.951992e-49 | -8.615850e-47 |
| Msa1184530 | Msa1209560 | 0.804469 | 2.128729e-49 | -8.615850e-47 |
| Msa1203200 | Msa1209560 | 0.804694 | 1.910261e-49 | -8.615850e-47 |
| Msa1208760 | Msa1209560 | 0.825685 | 4.095598e-54 | -8.615850e-47 |
| Msa1209560 | Msa1209570 | 0.840119 | 1.053630e-57 | -8.615850e-47 |
| Msa1209560 | Msa1219040 | 0.802789 | 4.748137e-49 | -8.615850e-47 |
| Msa1209560 | Msa1244300 | 0.804227 | 2.390466e-49 | -8.615850e-47 |
| Msa1209560 | Msa1246040 | 0.981756 | 2.272981e-153 | -8.615850e-47 |
| Msa1209560 | Msa1258950 | 0.809114 | 2.220693e-50 | -8.615850e-47 |
| Msa1209560 | Msa1298910 | 0.974820 | 7.805451e-139 | -8.615850e-47 |
| Msa1209560 | Msa1328830 | -0.819437 | 1.161746e-52 | -8.615850e-47 |
| Msa1209560 | Msa1330530 | 0.977742 | 2.160544e-144 | -8.615850e-47 |
| Msa1209560 | Msa1375800 | 0.829077 | 6.297120e-55 | -8.615850e-47 |
| Msa1209560 | Msa1376890 | 0.801838 | 7.454853e-49 | -8.615850e-47 |
| Msa1209560 | Msa1377070 | 0.806168 | 9.376872e-50 | -8.615850e-47 |
| Msa1209560 | Msa1387750 | -0.836512 | 8.961934e-57 | -8.615850e-47 |
| Msa1209560 | Msa1416140 | -0.813666 | 2.280680e-51 | -8.615850e-47 |
| Msa1209560 | Msa1445250 | 0.880989 | 3.483332e-70 | -8.615850e-47 |
| Msa1209560 | Msa1457020 | 0.827142 | 1.841685e-54 | -8.615850e-47 |
| Msa1209560 | Msa1457070 | 0.827005 | 1.986791e-54 | -8.615850e-47 |
| Msa1209560 | Msa1461810 | -0.808132 | 3.598531e-50 | -8.615850e-47 |
| Msa1209560 | Msa1466810 | 0.846568 | 2.001812e-59 | -8.615850e-47 |
| Msa0492870 | Msa1209560 | 0.801254 | 9.819919e-49 | -8.615850e-47 |
| Msa0492880 | Msa1209560 | 0.811677 | 6.211573e-51 | -8.615850e-47 |
| Msa0514130 | Msa1209560 | -0.857425 | 1.646784e-62 | -8.615850e-47 |
| Msa0522460 | Msa1209560 | 0.802285 | 6.032221e-49 | -8.615850e-47 |
| Msa0527900 | Msa1209560 | 0.801945 | 7.085812e-49 | -8.615850e-47 |
| Msa0528970 | Msa1209560 | 0.835938 | 1.253511e-56 | -8.615850e-47 |
| Msa0543900 | Msa1209560 | 0.802984 | 4.327444e-49 | -8.615850e-47 |
| Msa0544930 | Msa1209560 | 0.848536 | 5.759800e-60 | -8.615850e-47 |
| Msa0599770 | Msa1209560 | 0.800023 | 1.750737e-48 | -8.615850e-47 |
| Msa0883450 | Msa1209560 | 0.802352 | 5.843628e-49 | -8.615850e-47 |
| Msa0884890 | Msa1209560 | 0.846025 | 2.813727e-59 | -8.615850e-47 |
| Msa0885320 | Msa1209560 | 0.819478 | 1.137209e-52 | -8.615850e-47 |
| Msa0886660 | Msa1209560 | 0.814344 | 1.616511e-51 | -8.615850e-47 |
| Msa0900200 | Msa1209560 | 0.821662 | 3.583051e-53 | -8.615850e-47 |
| Msa0912160 | Msa1209560 | 0.808348 | 3.237666e-50 | -8.615850e-47 |
| Msa0912200 | Msa1209560 | 0.812249 | 4.661815e-51 | -8.615850e-47 |
| Msa0912210 | Msa1209560 | 0.846023 | 2.816829e-59 | -8.615850e-47 |
| Msa0912230 | Msa1209560 | 0.828290 | 9.762204e-55 | -8.615850e-47 |
| Msa0912470 | Msa1209560 | 0.887159 | 1.822929e-72 | -8.615850e-47 |
| Msa0921220 | Msa1209560 | 0.802773 | 4.784801e-49 | -8.615850e-47 |
| Msa0935570 | Msa1209560 | -0.803158 | 3.983606e-49 | -8.615850e-47 |
| Msa0951720 | Msa1209560 | 0.810822 | 9.519537e-51 | -8.615850e-47 |
| Msa0965520 | Msa1209560 | 0.809066 | 2.273751e-50 | -8.615850e-47 |
| Msa0972470 | Msa1209560 | -0.818709 | 1.701296e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1209560 | MtrunA17_Chr4g0058571 | 90.258 | 698 | 33 | 2 | 17 | 679 | 33 | 730 | 0.0 | 1202 |
| Msa1209560 | MtrunA17_Chr1g0202741 | 31.108 | 704 | 397 | 16 | 10 | 652 | 9 | 685 | 1.52e-111 | 352 |
| Msa1209560 | MtrunA17_Chr1g0202731 | 30.791 | 695 | 411 | 17 | 10 | 652 | 14 | 690 | 1.73e-104 | 333 |
| Msa1209560 | MtrunA17_Chr8g0348521 | 31.505 | 711 | 392 | 18 | 8 | 654 | 7 | 686 | 3.05e-98 | 317 |
| Msa1209560 | MtrunA17_Chr8g0348531 | 35.460 | 533 | 285 | 13 | 22 | 508 | 34 | 553 | 1.52e-91 | 300 |
| Msa1209560 | MtrunA17_Chr2g0291481 | 28.634 | 688 | 419 | 17 | 44 | 679 | 73 | 740 | 5.21e-75 | 256 |
| Msa1209560 | MtrunA17_Chr8g0349071 | 43.116 | 276 | 148 | 5 | 196 | 468 | 4 | 273 | 8.26e-62 | 208 |
| Msa1209560 | MtrunA17_Chr4g0061441 | 32.178 | 202 | 117 | 8 | 224 | 411 | 473 | 668 | 2.31e-23 | 105 |
| Msa1209560 | MtrunA17_Chr8g0387591 | 26.718 | 262 | 162 | 7 | 222 | 459 | 552 | 807 | 5.14e-20 | 95.1 |
| Msa1209560 | MtrunA17_Chr1g0192121 | 25.651 | 269 | 156 | 7 | 183 | 411 | 454 | 718 | 7.25e-20 | 94.7 |
| Msa1209560 | MtrunA17_Chr3g0131401 | 26.230 | 244 | 134 | 8 | 196 | 411 | 523 | 748 | 2.77e-18 | 89.7 |
| Msa1209560 | MtrunA17_Chr3g0131361 | 26.538 | 260 | 136 | 8 | 204 | 411 | 478 | 734 | 4.23e-18 | 89.0 |
| Msa1209560 | MtrunA17_Chr8g0385411 | 27.358 | 212 | 121 | 7 | 229 | 411 | 520 | 727 | 1.41e-17 | 87.4 |
| Msa1209560 | MtrunA17_Chr7g0272591 | 24.254 | 268 | 160 | 7 | 183 | 411 | 467 | 730 | 2.95e-17 | 86.3 |
| Msa1209560 | MtrunA17_Chr3g0131381 | 26.027 | 219 | 130 | 6 | 222 | 411 | 527 | 742 | 2.08e-16 | 83.6 |
| Msa1209560 | MtrunA17_Chr2g0301511 | 28.455 | 246 | 135 | 9 | 208 | 415 | 514 | 756 | 3.22e-15 | 79.7 |
| Msa1209560 | MtrunA17_Chr8g0349061 | 31.111 | 135 | 86 | 4 | 8 | 136 | 7 | 140 | 7.91e-14 | 69.7 |
| Msa1209560 | MtrunA17_Chr7g0238371 | 26.027 | 219 | 123 | 7 | 229 | 411 | 469 | 684 | 7.95e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1209560 | AT5G50160.1 | 47.493 | 718 | 310 | 14 | 20 | 679 | 20 | 728 | 0.0 | 639 |
| Msa1209560 | AT5G50160.2 | 46.269 | 536 | 255 | 13 | 169 | 679 | 22 | 549 | 1.09e-154 | 459 |
| Msa1209560 | AT1G01590.1 | 32.421 | 694 | 399 | 15 | 10 | 653 | 15 | 688 | 9.60e-116 | 363 |
| Msa1209560 | AT1G23020.7 | 33.286 | 703 | 367 | 18 | 10 | 653 | 15 | 674 | 1.71e-115 | 362 |
| Msa1209560 | AT1G23020.4 | 33.144 | 706 | 367 | 18 | 10 | 653 | 15 | 677 | 4.76e-115 | 361 |
| Msa1209560 | AT1G23020.3 | 33.144 | 706 | 367 | 18 | 10 | 653 | 15 | 677 | 4.76e-115 | 361 |
| Msa1209560 | AT1G23020.1 | 33.144 | 706 | 367 | 18 | 10 | 653 | 38 | 700 | 9.27e-115 | 361 |
| Msa1209560 | AT1G23020.5 | 33.144 | 706 | 367 | 18 | 10 | 653 | 38 | 700 | 9.27e-115 | 361 |
| Msa1209560 | AT1G23020.6 | 32.956 | 707 | 368 | 18 | 10 | 653 | 15 | 678 | 1.79e-114 | 359 |
| Msa1209560 | AT1G23020.2 | 32.956 | 707 | 368 | 18 | 10 | 653 | 38 | 701 | 4.53e-114 | 359 |
| Msa1209560 | AT1G01580.1 | 31.206 | 705 | 402 | 20 | 11 | 654 | 28 | 710 | 3.56e-104 | 333 |
| Msa1209560 | AT1G01580.2 | 31.294 | 703 | 400 | 20 | 11 | 652 | 106 | 786 | 1.37e-103 | 334 |
| Msa1209560 | AT5G23980.1 | 30.846 | 697 | 406 | 17 | 10 | 652 | 8 | 682 | 3.17e-102 | 328 |
| Msa1209560 | AT5G23990.2 | 30.737 | 706 | 395 | 21 | 10 | 652 | 8 | 682 | 1.11e-97 | 315 |
| Msa1209560 | AT5G23990.3 | 32.264 | 561 | 300 | 16 | 149 | 652 | 13 | 550 | 1.36e-84 | 277 |
| Msa1209560 | AT5G49740.1 | 28.533 | 743 | 428 | 16 | 10 | 679 | 35 | 747 | 7.72e-83 | 277 |
| Msa1209560 | AT5G23990.1 | 31.429 | 560 | 304 | 15 | 152 | 654 | 106 | 642 | 1.89e-81 | 271 |
| Msa1209560 | AT5G49730.1 | 28.044 | 731 | 445 | 17 | 10 | 679 | 28 | 738 | 4.85e-76 | 259 |
| Msa1209560 | AT5G49740.3 | 28.759 | 685 | 389 | 15 | 10 | 621 | 35 | 693 | 2.99e-73 | 251 |
| Msa1209560 | AT5G49740.2 | 31.478 | 521 | 278 | 8 | 10 | 467 | 35 | 539 | 7.93e-73 | 245 |
| Msa1209560 | AT5G49730.2 | 30.709 | 508 | 297 | 9 | 10 | 467 | 28 | 530 | 1.22e-66 | 229 |
| Msa1209560 | AT1G09090.2 | 26.792 | 265 | 151 | 7 | 194 | 418 | 430 | 691 | 1.04e-20 | 97.8 |
| Msa1209560 | AT4G25090.1 | 26.070 | 257 | 151 | 7 | 204 | 425 | 445 | 697 | 1.29e-20 | 97.4 |
| Msa1209560 | AT5G47910.1 | 30.357 | 280 | 146 | 12 | 183 | 423 | 498 | 767 | 1.39e-20 | 97.4 |
| Msa1209560 | AT4G25090.2 | 26.070 | 257 | 151 | 7 | 204 | 425 | 433 | 685 | 1.57e-20 | 97.1 |
| Msa1209560 | AT1G19230.1 | 29.167 | 216 | 124 | 6 | 222 | 411 | 536 | 748 | 6.65e-20 | 95.1 |
| Msa1209560 | AT1G19230.2 | 29.167 | 216 | 124 | 6 | 222 | 411 | 562 | 774 | 7.99e-20 | 95.1 |
| Msa1209560 | AT5G51060.1 | 25.651 | 269 | 156 | 8 | 183 | 411 | 473 | 737 | 8.12e-20 | 95.1 |
| Msa1209560 | AT1G64060.1 | 27.570 | 214 | 128 | 6 | 222 | 411 | 558 | 768 | 5.76e-19 | 92.4 |
| Msa1209560 | AT5G07390.1 | 28.910 | 211 | 119 | 7 | 229 | 411 | 522 | 729 | 7.16e-17 | 85.5 |
| Msa1209560 | AT5G07390.2 | 28.910 | 211 | 119 | 7 | 229 | 411 | 490 | 697 | 8.19e-17 | 85.1 |
| Msa1209560 | AT4G11230.1 | 28.019 | 207 | 122 | 6 | 229 | 411 | 552 | 755 | 5.68e-15 | 79.3 |
| Msa1209560 | AT1G09090.1 | 28.022 | 182 | 104 | 5 | 196 | 353 | 432 | 610 | 2.97e-12 | 70.5 |
| Msa1209560 | AT3G45810.1 | 26.872 | 227 | 128 | 6 | 221 | 411 | 497 | 721 | 4.22e-12 | 70.1 |
Find 129 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACTTTCTTCTTCTAATT+TGG | 0.027502 | 8_1:+68112295 | None:intergenic |
| ATAATTGCTATTGCTATAAT+TGG | 0.176243 | 8_1:-68113420 | Msa1209560:CDS |
| AAACCACATTCAAGGATAAA+AGG | 0.182915 | 8_1:+68110498 | None:intergenic |
| ACACTTTAGTAGTCTAAATT+TGG | 0.194761 | 8_1:-68110674 | Msa1209560:exon |
| CAAGAGTTGTATTGGTATTT+AGG | 0.198094 | 8_1:+68110651 | None:intergenic |
| ATTATAGCAATAGCAATTAT+TGG | 0.198333 | 8_1:+68113423 | None:intergenic |
| AAACTTTCTTCTTCTAATTT+GGG | 0.215669 | 8_1:+68112296 | None:intergenic |
| GTTTGGATGGCTGCTATTAC+TGG | 0.223975 | 8_1:-68111284 | Msa1209560:CDS |
| GAAGAACATGAAGTTCATTT+TGG | 0.229533 | 8_1:-68110978 | Msa1209560:CDS |
| GCCATCCAAACTGGACTTTC+AGG | 0.231763 | 8_1:+68111296 | None:intergenic |
| TCCATATGCTGCATAATAAT+TGG | 0.232641 | 8_1:+68111319 | None:intergenic |
| GGAGGCAGGCCTAACTTTAA+AGG | 0.237785 | 8_1:-68110957 | Msa1209560:intron |
| AACTCCATTTCTGAGCATTT+TGG | 0.264485 | 8_1:-68111591 | Msa1209560:CDS |
| CCAAAGAAAAGACTCCTTCT+TGG | 0.273461 | 8_1:-68111181 | Msa1209560:CDS |
| TTGGCTGTATTTCGTATATT+TGG | 0.274271 | 8_1:-68112889 | Msa1209560:CDS |
| TTGATTTGAACAGATATATT+AGG | 0.280035 | 8_1:-68110860 | Msa1209560:intron |
| ACAGCCAACCCTCTTAAAAT+TGG | 0.296428 | 8_1:+68112904 | None:intergenic |
| TAAACAAAGGTGCTGATAAA+AGG | 0.299046 | 8_1:-68111786 | Msa1209560:CDS |
| TTGCAGCTTGGATTTCTCTT+TGG | 0.308763 | 8_1:-68113671 | Msa1209560:CDS |
| CAGACATGACAGTGTGATTA+TGG | 0.308804 | 8_1:-68111633 | Msa1209560:CDS |
| TCCAATTATTATGCAGCATA+TGG | 0.312731 | 8_1:-68111320 | Msa1209560:CDS |
| AATTTAGTACTTGGATCTTT+AGG | 0.315372 | 8_1:+68112069 | None:intergenic |
| GTCTGTGGAACGCCTTTCTT+AGG | 0.318947 | 8_1:+68111059 | None:intergenic |
| ATGGAATTACCTTTAAAGTT+AGG | 0.331214 | 8_1:+68110948 | None:intergenic |
| AACTACCAGTATTTCAAAAC+TGG | 0.337767 | 8_1:+68113187 | None:intergenic |
| TTCAAATATATAACACTTGT+AGG | 0.341605 | 8_1:+68111949 | None:intergenic |
| TTTGTTAGCAGAAGCTTGTT+TGG | 0.351150 | 8_1:-68112941 | Msa1209560:CDS |
| TGGATCTGATATTGGAGTTT+TGG | 0.352657 | 8_1:-68110816 | Msa1209560:CDS |
| TGCAGAAGTGGAAGGAGTTC+AGG | 0.369132 | 8_1:-68113266 | Msa1209560:intron |
| TTTCAGACGGAACTATAGTA+TGG | 0.372957 | 8_1:+68111219 | None:intergenic |
| GAATCTGAGTGTTTGAAGTT+AGG | 0.378131 | 8_1:-68110743 | Msa1209560:CDS |
| CATGATGTTCTCATCAGCTT+TGG | 0.389412 | 8_1:+68111873 | None:intergenic |
| ACAACTAAGCGTGGGAATTA+CGG | 0.389449 | 8_1:-68111396 | Msa1209560:CDS |
| AATGAACTTCATGTTCTTCA+AGG | 0.391345 | 8_1:+68110982 | None:intergenic |
| GTAATAGCAGCCATCCAAAC+TGG | 0.395706 | 8_1:+68111287 | None:intergenic |
| ACAGTTTGTCAAGGCTAAAA+AGG | 0.399184 | 8_1:+68112172 | None:intergenic |
| TTCAGCTGACCTTGGATCAA+TGG | 0.399876 | 8_1:+68111016 | None:intergenic |
| CTTAGAATAGCAACAAGGTT+TGG | 0.405833 | 8_1:-68112964 | Msa1209560:CDS |
| TGTACAAGTTGTATCCTTGA+TGG | 0.413043 | 8_1:+68111533 | None:intergenic |
| AACCACATTCAAGGATAAAA+GGG | 0.418747 | 8_1:+68110499 | None:intergenic |
| AATTAGCTCCACAGCTTCAC+AGG | 0.423110 | 8_1:+68112095 | None:intergenic |
| ACTGATTCCTTCATGCTCTC+AGG | 0.423606 | 8_1:+68110785 | None:intergenic |
| CTACATTATTTGTGGTGCTC+TGG | 0.430461 | 8_1:+68110551 | None:intergenic |
| TGGGGATAAGCACTTCTATA+TGG | 0.435559 | 8_1:-68112211 | Msa1209560:CDS |
| GATGGAGAAGGTTGAAGAAA+GGG | 0.435831 | 8_1:-68111085 | Msa1209560:CDS |
| TTCTTAGTTTCAGCTGACCT+TGG | 0.437129 | 8_1:+68111008 | None:intergenic |
| GGGGAGATTACACTTGTTGC+CGG | 0.437985 | 8_1:-68112345 | Msa1209560:CDS |
| ACAGGACGTATATACCTTGC+TGG | 0.440780 | 8_1:-68112366 | Msa1209560:CDS |
| TCTGCCAAAATGCTCAGAAA+TGG | 0.441657 | 8_1:+68111587 | None:intergenic |
| AAAGACTCCTTCTTGGATAG+TGG | 0.442694 | 8_1:-68111174 | Msa1209560:CDS |
| TCAGCTGACCTTGGATCAAT+GGG | 0.445604 | 8_1:+68111017 | None:intergenic |
| AGATGGAGAAGGTTGAAGAA+AGG | 0.445970 | 8_1:-68111086 | Msa1209560:CDS |
| TTTAAATAGTCTAATGAAGC+AGG | 0.448724 | 8_1:+68111727 | None:intergenic |
| GAAGCGTGTGGATCTGATAT+TGG | 0.448770 | 8_1:-68110824 | Msa1209560:CDS |
| CTGAACAGCAAGAGTTGTAT+TGG | 0.448850 | 8_1:+68110643 | None:intergenic |
| TTTAAGAGTTGCAAGTAAAG+TGG | 0.451021 | 8_1:+68113713 | None:intergenic |
| AACTTGTACATGTCATTAAG+AGG | 0.459864 | 8_1:-68111520 | Msa1209560:CDS |
| ATTATGGTTGCTGGAGGTAG+TGG | 0.462206 | 8_1:-68111617 | Msa1209560:CDS |
| GACAGTGTGATTATGGTTGC+TGG | 0.463898 | 8_1:-68111626 | Msa1209560:CDS |
| GGTATACCTGTTGCAATTGA+AGG | 0.469135 | 8_1:-68111760 | Msa1209560:CDS |
| ATTATATATGATTCTACACT+TGG | 0.476217 | 8_1:+68110593 | None:intergenic |
| TATCATGTCATAAAGAGTAT+TGG | 0.480329 | 8_1:+68111819 | None:intergenic |
| TAGTATGGTTGAAACAGATT+AGG | 0.480827 | 8_1:+68111234 | None:intergenic |
| ATGGACCTGAAAGTCCAGTT+TGG | 0.481479 | 8_1:-68111301 | Msa1209560:CDS |
| TAGGGCCCTTCAATTGCAAC+AGG | 0.481704 | 8_1:+68111754 | None:intergenic |
| CAACTATATCTCATCTTCAA+TGG | 0.489902 | 8_1:-68111921 | Msa1209560:CDS |
| CTAGTGGTGAACAGTGTAGT+TGG | 0.497615 | 8_1:-68113218 | Msa1209560:CDS |
| TAGGAAAATAAGAAAAGTGA+TGG | 0.497785 | 8_1:+68111253 | None:intergenic |
| TGATTAAATGTCAAGGGTGG+TGG | 0.504355 | 8_1:-68111843 | Msa1209560:CDS |
| TGAATACTTTGCCACGCTGA+AGG | 0.507529 | 8_1:+68113754 | None:intergenic |
| GTTGCAATTGAAGGGCCCTA+TGG | 0.513882 | 8_1:-68111751 | Msa1209560:CDS |
| CACTTCTATATGGTCTTCCC+AGG | 0.515363 | 8_1:-68112201 | Msa1209560:CDS |
| CAGGACGTATATACCTTGCT+GGG | 0.524995 | 8_1:-68112365 | Msa1209560:CDS |
| CCAGTATTTCAAAACTGGAT+AGG | 0.525480 | 8_1:+68113192 | None:intergenic |
| GAATACTTTGCCACGCTGAA+GGG | 0.527827 | 8_1:+68113755 | None:intergenic |
| TCAAATATATAACACTTGTA+GGG | 0.536178 | 8_1:+68111950 | None:intergenic |
| GTCTAATGAAGCAGGTCCAT+AGG | 0.538097 | 8_1:+68111735 | None:intergenic |
| AACTTTCTTCTTCTAATTTG+GGG | 0.542459 | 8_1:+68112297 | None:intergenic |
| ATGAACTTCATGTTCTTCAA+GGG | 0.543742 | 8_1:+68110983 | None:intergenic |
| TATGTGAACTACATTATTTG+TGG | 0.545711 | 8_1:+68110543 | None:intergenic |
| TGATAGCAATTGTGTTGAGA+TGG | 0.546274 | 8_1:-68111103 | Msa1209560:CDS |
| ACTACACTGTTCACCACTAG+TGG | 0.547544 | 8_1:+68113221 | None:intergenic |
| ATTTGGAAGTGGCAAAAGAC+AGG | 0.548862 | 8_1:-68112384 | Msa1209560:CDS |
| TCTAATGAAGCAGGTCCATA+GGG | 0.551514 | 8_1:+68111736 | None:intergenic |
| AATTCTAGCTGAAACCATGC+AGG | 0.558194 | 8_1:+68112122 | None:intergenic |
| CGTTCCACAGACATCGCAGA+TGG | 0.560042 | 8_1:-68111048 | Msa1209560:CDS |
| AGTAGATCCACTATCCAAGA+AGG | 0.560330 | 8_1:+68111167 | None:intergenic |
| TTGTTAAACAGATTTGGAAG+TGG | 0.560851 | 8_1:-68112395 | Msa1209560:intron |
| CATTGAAGATGAGATATAGT+TGG | 0.565837 | 8_1:+68111922 | None:intergenic |
| ATTTCCATCTGCGATGTCTG+TGG | 0.573154 | 8_1:+68111044 | None:intergenic |
| AAGCTGGATATCAAAGAAGC+GGG | 0.574886 | 8_1:-68113377 | Msa1209560:intron |
| AAGAAAGGGATTCCTAAGAA+AGG | 0.575794 | 8_1:-68111071 | Msa1209560:CDS |
| ATACAACTCTTGCTGTTCAG+TGG | 0.579378 | 8_1:-68110640 | Msa1209560:three_prime_UTR |
| TCTTCTAATTTGGGGAAGTG+AGG | 0.582585 | 8_1:+68112305 | None:intergenic |
| GATTCTACACTTGGGAGTGA+AGG | 0.587916 | 8_1:+68110602 | None:intergenic |
| TTATAAACTGCAGAAGTGGA+AGG | 0.592835 | 8_1:-68113274 | Msa1209560:intron |
| TGGATGGCTGCTATTACTGG+AGG | 0.596455 | 8_1:-68111281 | Msa1209560:CDS |
| GTATACCTGTTGCAATTGAA+GGG | 0.597798 | 8_1:-68111759 | Msa1209560:CDS |
| CAAAGTATTCAAGTCAGAGA+TGG | 0.598654 | 8_1:-68113742 | Msa1209560:exon |
| AGAGAGTGAAGAGTGAAGCA+TGG | 0.598825 | 8_1:+68110704 | None:intergenic |
| ACAAGAAACACAACTAAGCG+TGG | 0.598890 | 8_1:-68111405 | Msa1209560:CDS |
| ATTAGCTCCACAGCTTCACA+GGG | 0.603545 | 8_1:+68112096 | None:intergenic |
| ACCTGAAAGTCCAGTTTGGA+TGG | 0.603632 | 8_1:-68111297 | Msa1209560:CDS |
| ACTTGTACATGTCATTAAGA+GGG | 0.611165 | 8_1:-68111519 | Msa1209560:CDS |
| GGTAACGAAGATAACAAGGC+CGG | 0.617903 | 8_1:+68112326 | None:intergenic |
| AAAGGTGCTGATAAAAGGAA+AGG | 0.621349 | 8_1:-68111781 | Msa1209560:CDS |
| AAAGCTGGATATCAAAGAAG+CGG | 0.623426 | 8_1:-68113378 | Msa1209560:CDS |
| AAATTAAACCCATTGATCCA+AGG | 0.624754 | 8_1:-68111025 | Msa1209560:CDS |
| TTATACGCAACAGTTTGTCA+AGG | 0.631011 | 8_1:+68112163 | None:intergenic |
| GTGAGGTAACGAAGATAACA+AGG | 0.631966 | 8_1:+68112322 | None:intergenic |
| CAAGAAACACAACTAAGCGT+GGG | 0.635628 | 8_1:-68111404 | Msa1209560:CDS |
| ACCACATTCAAGGATAAAAG+GGG | 0.637408 | 8_1:+68110500 | None:intergenic |
| TGTCTTCTCAAATCCACTAG+TGG | 0.637702 | 8_1:-68113234 | Msa1209560:CDS |
| TTATATATGATTCTACACTT+GGG | 0.637805 | 8_1:+68110594 | None:intergenic |
| CTGTGATGATTAAATGTCAA+GGG | 0.637969 | 8_1:-68111849 | Msa1209560:CDS |
| CAAGTGTAATCTCCCCAGCA+AGG | 0.650642 | 8_1:+68112352 | None:intergenic |
| TGAGAGCATGAAGGAATCAG+TGG | 0.658286 | 8_1:-68110783 | Msa1209560:CDS |
| ATACAAACTGAATTAAACAA+AGG | 0.659472 | 8_1:-68111799 | Msa1209560:CDS |
| TCTGTGATGATTAAATGTCA+AGG | 0.676323 | 8_1:-68111850 | Msa1209560:CDS |
| ACACTTGGGAGTGAAGGCAA+AGG | 0.686030 | 8_1:+68110608 | None:intergenic |
| TTGTGGTCCTGAGAGCATGA+AGG | 0.688445 | 8_1:-68110792 | Msa1209560:CDS |
| AAATTCAAGAATGAAGCGTG+TGG | 0.689017 | 8_1:-68110836 | Msa1209560:CDS |
| CCACATTCAAGGATAAAAGG+GGG | 0.690410 | 8_1:+68110501 | None:intergenic |
| CAATTGTGTTGAGATGGAGA+AGG | 0.701994 | 8_1:-68111097 | Msa1209560:CDS |
| AGTTTCTTAGAATAGCAACA+AGG | 0.702556 | 8_1:-68112969 | Msa1209560:CDS |
| AGGACGTATATACCTTGCTG+GGG | 0.713855 | 8_1:-68112364 | Msa1209560:CDS |
| AGTGTGATTATGGTTGCTGG+AGG | 0.744527 | 8_1:-68111623 | Msa1209560:CDS |
| TGATGATTAAATGTCAAGGG+TGG | 0.754801 | 8_1:-68111846 | Msa1209560:CDS |
| TTAGCTCCACAGCTTCACAG+GGG | 0.790665 | 8_1:+68112097 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTTAATTACTTGAA+TGG | - | chr8_1:68110925-68110944 | Msa1209560:intron | 10.0% |
| !! | TAAAAATAACTAAAGAAACA+TGG | + | chr8_1:68111740-68111759 | None:intergenic | 15.0% |
| !! | AAATTAATATTCCATTCAAA+CGG | - | chr8_1:68112245-68112264 | Msa1209560:CDS | 15.0% |
| !!! | TATATATTTTTAGAAATGCA+AGG | + | chr8_1:68113339-68113358 | None:intergenic | 15.0% |
| !!! | AATACAATTTTTGGATACTA+TGG | - | chr8_1:68110664-68110683 | Msa1209560:three_prime_UTR | 20.0% |
| !! | ATTATAGCAATAGCAATTAT+TGG | + | chr8_1:68110832-68110851 | None:intergenic | 20.0% |
| !!! | ATAATTGCTATTGCTATAAT+TGG | - | chr8_1:68110832-68110851 | Msa1209560:CDS | 20.0% |
| !!! | TTTTCTTTTTATAGTCTTCT+TGG | - | chr8_1:68111087-68111106 | Msa1209560:CDS | 20.0% |
| !!! | TTAAGTTGTTTATCCAAATA+AGG | + | chr8_1:68111525-68111544 | None:intergenic | 20.0% |
| !!! | TCATATTTGTTAAACAGATT+TGG | - | chr8_1:68111851-68111870 | Msa1209560:CDS | 20.0% |
| !! | AAACTTTCTTCTTCTAATTT+GGG | + | chr8_1:68111959-68111978 | None:intergenic | 20.0% |
| !! | TCAAATATATAACACTTGTA+GGG | + | chr8_1:68112305-68112324 | None:intergenic | 20.0% |
| !! | TTCAAATATATAACACTTGT+AGG | + | chr8_1:68112306-68112325 | None:intergenic | 20.0% |
| !! | ATACAAACTGAATTAAACAA+AGG | - | chr8_1:68112453-68112472 | Msa1209560:intron | 20.0% |
| !!! | TGATGGAAATTTATTTTTGT+TGG | + | chr8_1:68112705-68112724 | None:intergenic | 20.0% |
| !! | ACAAAAATAAATTTCCATCA+AGG | - | chr8_1:68112705-68112724 | Msa1209560:intron | 20.0% |
| !!! | TTGATTTGAACAGATATATT+AGG | - | chr8_1:68113392-68113411 | Msa1209560:CDS | 20.0% |
| !! | TTATATATGATTCTACACTT+GGG | + | chr8_1:68113661-68113680 | None:intergenic | 20.0% |
| !! | ATTATATATGATTCTACACT+TGG | + | chr8_1:68113662-68113681 | None:intergenic | 20.0% |
| !! | TTATTTTCATATTTGCAGCT+TGG | - | chr8_1:68110569-68110588 | Msa1209560:three_prime_UTR | 25.0% |
| !! | AGCGCTAATAATACAATTTT+TGG | - | chr8_1:68110655-68110674 | Msa1209560:three_prime_UTR | 25.0% |
| !!! | TGCAATAGAGATTTTAGTTT+AGG | + | chr8_1:68110696-68110715 | None:intergenic | 25.0% |
| !! | TATAATTGGACTTCTTTTCT+TGG | - | chr8_1:68110846-68110865 | Msa1209560:CDS | 25.0% |
| !! | CTTCTGCAGTTTATAATTTT+AGG | + | chr8_1:68110974-68110993 | None:intergenic | 25.0% |
| ! | AAAATTATAAACTGCAGAAG+TGG | - | chr8_1:68110974-68110993 | Msa1209560:CDS | 25.0% |
| !!! | CATCAACTTTTTGAAATCAT+TGG | + | chr8_1:68111137-68111156 | None:intergenic | 25.0% |
| ! | GATTTAGACATACTTTAAGT+TGG | - | chr8_1:68111196-68111215 | Msa1209560:CDS | 25.0% |
| ! | CATCATAATTTACTTTCAGA+TGG | - | chr8_1:68111253-68111272 | Msa1209560:CDS | 25.0% |
| !!! | TTCTTCTTCCAATTTTAAGA+GGG | - | chr8_1:68111340-68111359 | Msa1209560:CDS | 25.0% |
| ! | TCAAATAAGTTAATACGAAC+TGG | - | chr8_1:68111708-68111727 | Msa1209560:intron | 25.0% |
| ! | TAACTAAAGAAACATGGTTA+GGG | + | chr8_1:68111734-68111753 | None:intergenic | 25.0% |
| ! | ATAACTAAAGAAACATGGTT+AGG | + | chr8_1:68111735-68111754 | None:intergenic | 25.0% |
| ! | AACTTTCTTCTTCTAATTTG+GGG | + | chr8_1:68111958-68111977 | None:intergenic | 25.0% |
| ! | CAAACTTTCTTCTTCTAATT+TGG | + | chr8_1:68111960-68111979 | None:intergenic | 25.0% |
| !!! | TATTTTTCTTGTTTCATGCT+GGG | - | chr8_1:68112022-68112041 | Msa1209560:intron | 25.0% |
| ! | AATTTAGTACTTGGATCTTT+AGG | + | chr8_1:68112186-68112205 | None:intergenic | 25.0% |
| ! | CTGTACATAAATTTAGTACT+TGG | + | chr8_1:68112195-68112214 | None:intergenic | 25.0% |
| !! | TATCATGTCATAAAGAGTAT+TGG | + | chr8_1:68112436-68112455 | None:intergenic | 25.0% |
| ! | TTTAAATAGTCTAATGAAGC+AGG | + | chr8_1:68112528-68112547 | None:intergenic | 25.0% |
| !! | AATGAAATTTTTCGCTTGAT+CGG | + | chr8_1:68112805-68112824 | None:intergenic | 25.0% |
| ! | TAGGAAAATAAGAAAAGTGA+TGG | + | chr8_1:68113002-68113021 | None:intergenic | 25.0% |
| !!! | ATGGAATTACCTTTAAAGTT+AGG | + | chr8_1:68113307-68113326 | None:intergenic | 25.0% |
| ! | ACACTTTAGTAGTCTAAATT+TGG | - | chr8_1:68113578-68113597 | Msa1209560:intron | 25.0% |
| ! | TATGTGAACTACATTATTTG+TGG | + | chr8_1:68113712-68113731 | None:intergenic | 25.0% |
| !! | AAACTTTTAAACCACATTCA+AGG | + | chr8_1:68113765-68113784 | None:intergenic | 25.0% |
| TTTAAGAGTTGCAAGTAAAG+TGG | + | chr8_1:68110542-68110561 | None:intergenic | 30.0% | |
| !!! | TTTTTTGTCCATACTTGAGT+TGG | + | chr8_1:68110616-68110635 | None:intergenic | 30.0% |
| CTCAAGTATGGACAAAAAAA+TGG | - | chr8_1:68110617-68110636 | Msa1209560:three_prime_UTR | 30.0% | |
| AACTACCAGTATTTCAAAAC+TGG | + | chr8_1:68111068-68111087 | None:intergenic | 30.0% | |
| ! | TTTTTATAGTCTTCTTGGCA+TGG | - | chr8_1:68111092-68111111 | Msa1209560:CDS | 30.0% |
| ATTGAACATGTAAGTGTTTC+TGG | - | chr8_1:68111174-68111193 | Msa1209560:CDS | 30.0% | |
| !! | CATACTTTAAGTTGGATGAT+AGG | - | chr8_1:68111204-68111223 | Msa1209560:CDS | 30.0% |
| AGTTTCTTAGAATAGCAACA+AGG | - | chr8_1:68111283-68111302 | Msa1209560:CDS | 30.0% | |
| ! | CTTCTTCTTCCAATTTTAAG+AGG | - | chr8_1:68111339-68111358 | Msa1209560:CDS | 30.0% |
| TTGGCTGTATTTCGTATATT+TGG | - | chr8_1:68111363-68111382 | Msa1209560:CDS | 30.0% | |
| ! | ATACTTTTCGCTACAATACA+TGG | - | chr8_1:68111438-68111457 | Msa1209560:CDS | 30.0% |
| ATAAGCTGTTAATCTCTTCA+GGG | + | chr8_1:68111668-68111687 | None:intergenic | 30.0% | |
| TTGTTAAACAGATTTGGAAG+TGG | - | chr8_1:68111857-68111876 | Msa1209560:CDS | 30.0% | |
| !! | GTATTTTTCTTGTTTCATGC+TGG | - | chr8_1:68112021-68112040 | Msa1209560:intron | 30.0% |
| !! | ATTTTTCTTGTTTCATGCTG+GGG | - | chr8_1:68112023-68112042 | Msa1209560:intron | 30.0% |
| ! | TGTATTTTCGATCATTTGCA+GGG | - | chr8_1:68112268-68112287 | Msa1209560:CDS | 30.0% |
| CATTGAAGATGAGATATAGT+TGG | + | chr8_1:68112333-68112352 | None:intergenic | 30.0% | |
| CAACTATATCTCATCTTCAA+TGG | - | chr8_1:68112331-68112350 | Msa1209560:CDS | 30.0% | |
| TCTGTGATGATTAAATGTCA+AGG | - | chr8_1:68112402-68112421 | Msa1209560:intron | 30.0% | |
| CTGTGATGATTAAATGTCAA+GGG | - | chr8_1:68112403-68112422 | Msa1209560:intron | 30.0% | |
| !! | TAAACAAAGGTGCTGATAAA+AGG | - | chr8_1:68112466-68112485 | Msa1209560:intron | 30.0% |
| AACTTGTACATGTCATTAAG+AGG | - | chr8_1:68112732-68112751 | Msa1209560:intron | 30.0% | |
| ACTTGTACATGTCATTAAGA+GGG | - | chr8_1:68112733-68112752 | Msa1209560:intron | 30.0% | |
| GAAAGTAAAAACACTGCAAT+TGG | - | chr8_1:68112898-68112917 | Msa1209560:CDS | 30.0% | |
| TCCAATTATTATGCAGCATA+TGG | - | chr8_1:68112932-68112951 | Msa1209560:CDS | 30.0% | |
| TCCATATGCTGCATAATAAT+TGG | + | chr8_1:68112936-68112955 | None:intergenic | 30.0% | |
| TAGTATGGTTGAAACAGATT+AGG | + | chr8_1:68113021-68113040 | None:intergenic | 30.0% | |
| !! | AATTTGGAATGCTTTTCAGA+CGG | + | chr8_1:68113049-68113068 | None:intergenic | 30.0% |
| ! | AGTCTTTTCTTTGGACAATT+TGG | + | chr8_1:68113065-68113084 | None:intergenic | 30.0% |
| AAATTAAACCCATTGATCCA+AGG | - | chr8_1:68113227-68113246 | Msa1209560:CDS | 30.0% | |
| ATGAACTTCATGTTCTTCAA+GGG | + | chr8_1:68113272-68113291 | None:intergenic | 30.0% | |
| AATGAACTTCATGTTCTTCA+AGG | + | chr8_1:68113273-68113292 | None:intergenic | 30.0% | |
| ! | GAAGAACATGAAGTTCATTT+TGG | - | chr8_1:68113274-68113293 | Msa1209560:intron | 30.0% |
| ! | CAAGAGTTGTATTGGTATTT+AGG | + | chr8_1:68113604-68113623 | None:intergenic | 30.0% |
| AACCACATTCAAGGATAAAA+GGG | + | chr8_1:68113756-68113775 | None:intergenic | 30.0% | |
| AAACCACATTCAAGGATAAA+AGG | + | chr8_1:68113757-68113776 | None:intergenic | 30.0% | |
| ! | CAAAGTATTCAAGTCAGAGA+TGG | - | chr8_1:68110510-68110529 | Msa1209560:three_prime_UTR | 35.0% |
| !!! | TTTTGAAGCCAACTCAAGTA+TGG | - | chr8_1:68110605-68110624 | Msa1209560:three_prime_UTR | 35.0% |
| CTAAATAGTAAGTCTTCTGC+AGG | - | chr8_1:68110781-68110800 | Msa1209560:CDS | 35.0% | |
| AAAGCTGGATATCAAAGAAG+CGG | - | chr8_1:68110874-68110893 | Msa1209560:intron | 35.0% | |
| TTATAAACTGCAGAAGTGGA+AGG | - | chr8_1:68110978-68110997 | Msa1209560:CDS | 35.0% | |
| CCAGTATTTCAAAACTGGAT+AGG | + | chr8_1:68111063-68111082 | None:intergenic | 35.0% | |
| !!! | CCTATCCAGTTTTGAAATAC+TGG | - | chr8_1:68111060-68111079 | Msa1209560:CDS | 35.0% |
| CTTAGAATAGCAACAAGGTT+TGG | - | chr8_1:68111288-68111307 | Msa1209560:CDS | 35.0% | |
| ! | TTTGTTAGCAGAAGCTTGTT+TGG | - | chr8_1:68111311-68111330 | Msa1209560:CDS | 35.0% |
| !! | TCTTCCAATTTTAAGAGGGT+TGG | - | chr8_1:68111344-68111363 | Msa1209560:CDS | 35.0% |
| CTTCAGTTAAGTATCACACA+TGG | - | chr8_1:68111400-68111419 | Msa1209560:CDS | 35.0% | |
| GTTAAGTATCACACATGGAT+TGG | - | chr8_1:68111405-68111424 | Msa1209560:CDS | 35.0% | |
| CATAAGCTGTTAATCTCTTC+AGG | + | chr8_1:68111669-68111688 | None:intergenic | 35.0% | |
| ACAGTTTGTCAAGGCTAAAA+AGG | + | chr8_1:68112083-68112102 | None:intergenic | 35.0% | |
| TTATACGCAACAGTTTGTCA+AGG | + | chr8_1:68112092-68112111 | None:intergenic | 35.0% | |
| TCGAAAATACACCGTTTGAA+TGG | + | chr8_1:68112259-68112278 | None:intergenic | 35.0% | |
| ! | GTGTATTTTCGATCATTTGC+AGG | - | chr8_1:68112267-68112286 | Msa1209560:CDS | 35.0% |
| TGATGATTAAATGTCAAGGG+TGG | - | chr8_1:68112406-68112425 | Msa1209560:intron | 35.0% | |
| !! | AAAGGTGCTGATAAAAGGAA+AGG | - | chr8_1:68112471-68112490 | Msa1209560:intron | 35.0% |
| GTATACCTGTTGCAATTGAA+GGG | - | chr8_1:68112493-68112512 | Msa1209560:intron | 35.0% | |
| ! | AACTCCATTTCTGAGCATTT+TGG | - | chr8_1:68112661-68112680 | Msa1209560:intron | 35.0% |
| TGTACAAGTTGTATCCTTGA+TGG | + | chr8_1:68112722-68112741 | None:intergenic | 35.0% | |
| TTTCAGACGGAACTATAGTA+TGG | + | chr8_1:68113036-68113055 | None:intergenic | 35.0% | |
| TGATAGCAATTGTGTTGAGA+TGG | - | chr8_1:68113149-68113168 | Msa1209560:CDS | 35.0% | |
| AAGAAAGGGATTCCTAAGAA+AGG | - | chr8_1:68113181-68113200 | Msa1209560:CDS | 35.0% | |
| ! | GAACATGAAGTTCATTTTGG+AGG | - | chr8_1:68113277-68113296 | Msa1209560:intron | 35.0% |
| AAATGCAAGGAAAGAGACAA+TGG | + | chr8_1:68113326-68113345 | None:intergenic | 35.0% | |
| AAATTCAAGAATGAAGCGTG+TGG | - | chr8_1:68113416-68113435 | Msa1209560:CDS | 35.0% | |
| ! | TGGATCTGATATTGGAGTTT+TGG | - | chr8_1:68113436-68113455 | Msa1209560:CDS | 35.0% |
| !!! | GATATTGGAGTTTTGGTTTG+TGG | - | chr8_1:68113443-68113462 | Msa1209560:CDS | 35.0% |
| ! | GAATCTGAGTGTTTGAAGTT+AGG | - | chr8_1:68113509-68113528 | Msa1209560:intron | 35.0% |
| ACCACATTCAAGGATAAAAG+GGG | + | chr8_1:68113755-68113774 | None:intergenic | 35.0% | |
| TTGCAGCTTGGATTTCTCTT+TGG | - | chr8_1:68110581-68110600 | Msa1209560:three_prime_UTR | 40.0% | |
| ! | CTTTTCTTGGACTCAAAAGC+TGG | - | chr8_1:68110859-68110878 | Msa1209560:intron | 40.0% |
| AAGCTGGATATCAAAGAAGC+GGG | - | chr8_1:68110875-68110894 | Msa1209560:intron | 40.0% | |
| TGTCTTCTCAAATCCACTAG+TGG | - | chr8_1:68111018-68111037 | Msa1209560:CDS | 40.0% | |
| ACAGCCAACCCTCTTAAAAT+TGG | + | chr8_1:68111351-68111370 | None:intergenic | 40.0% | |
| TCACCTCACTTTGTATATGG+TGG | + | chr8_1:68111494-68111513 | None:intergenic | 40.0% | |
| ACCATATACAAAGTGAGGTG+AGG | - | chr8_1:68111493-68111512 | Msa1209560:CDS | 40.0% | |
| ACCTCACCTCACTTTGTATA+TGG | + | chr8_1:68111497-68111516 | None:intergenic | 40.0% | |
| GGTGAGGTCTATTCCTTATT+TGG | - | chr8_1:68111509-68111528 | Msa1209560:CDS | 40.0% | |
| ATTTGGAAGTGGCAAAAGAC+AGG | - | chr8_1:68111868-68111887 | Msa1209560:CDS | 40.0% | |
| GTGAGGTAACGAAGATAACA+AGG | + | chr8_1:68111933-68111952 | None:intergenic | 40.0% | |
| TCTTCTAATTTGGGGAAGTG+AGG | + | chr8_1:68111950-68111969 | None:intergenic | 40.0% | |
| TGGGGATAAGCACTTCTATA+TGG | - | chr8_1:68112041-68112060 | Msa1209560:intron | 40.0% | |
| ATCAAGTCCAAAAACCTGCA+TGG | - | chr8_1:68112116-68112135 | Msa1209560:CDS | 40.0% | |
| ! | AATTCTAGCTGAAACCATGC+AGG | + | chr8_1:68112133-68112152 | None:intergenic | 40.0% |
| CATGATGTTCTCATCAGCTT+TGG | + | chr8_1:68112382-68112401 | None:intergenic | 40.0% | |
| TGATTAAATGTCAAGGGTGG+TGG | - | chr8_1:68112409-68112428 | Msa1209560:intron | 40.0% | |
| GGTATACCTGTTGCAATTGA+AGG | - | chr8_1:68112492-68112511 | Msa1209560:intron | 40.0% | |
| TCTAATGAAGCAGGTCCATA+GGG | + | chr8_1:68112519-68112538 | None:intergenic | 40.0% | |
| CAGACATGACAGTGTGATTA+TGG | - | chr8_1:68112619-68112638 | Msa1209560:intron | 40.0% | |
| TCTGCCAAAATGCTCAGAAA+TGG | + | chr8_1:68112668-68112687 | None:intergenic | 40.0% | |
| ACAAGAAACACAACTAAGCG+TGG | - | chr8_1:68112847-68112866 | Msa1209560:intron | 40.0% | |
| CAAGAAACACAACTAAGCGT+GGG | - | chr8_1:68112848-68112867 | Msa1209560:intron | 40.0% | |
| ACAACTAAGCGTGGGAATTA+CGG | - | chr8_1:68112856-68112875 | Msa1209560:intron | 40.0% | |
| ! | CCAAGAAGGAGTCTTTTCTT+TGG | + | chr8_1:68113074-68113093 | None:intergenic | 40.0% |
| CCAAAGAAAAGACTCCTTCT+TGG | - | chr8_1:68113071-68113090 | Msa1209560:intron | 40.0% | |
| AAAGACTCCTTCTTGGATAG+TGG | - | chr8_1:68113078-68113097 | Msa1209560:intron | 40.0% | |
| AGTAGATCCACTATCCAAGA+AGG | + | chr8_1:68113088-68113107 | None:intergenic | 40.0% | |
| CAATTGTGTTGAGATGGAGA+AGG | - | chr8_1:68113155-68113174 | Msa1209560:CDS | 40.0% | |
| AGATGGAGAAGGTTGAAGAA+AGG | - | chr8_1:68113166-68113185 | Msa1209560:CDS | 40.0% | |
| GATGGAGAAGGTTGAAGAAA+GGG | - | chr8_1:68113167-68113186 | Msa1209560:CDS | 40.0% | |
| TTCTTAGTTTCAGCTGACCT+TGG | + | chr8_1:68113247-68113266 | None:intergenic | 40.0% | |
| !! | ATGAAGTTCATTTTGGAGGC+AGG | - | chr8_1:68113281-68113300 | Msa1209560:intron | 40.0% |
| CTGAACAGCAAGAGTTGTAT+TGG | + | chr8_1:68113612-68113631 | None:intergenic | 40.0% | |
| !! | ATACAACTCTTGCTGTTCAG+TGG | - | chr8_1:68113612-68113631 | Msa1209560:CDS | 40.0% |
| CTACATTATTTGTGGTGCTC+TGG | + | chr8_1:68113704-68113723 | None:intergenic | 40.0% | |
| CCACATTCAAGGATAAAAGG+GGG | + | chr8_1:68113754-68113773 | None:intergenic | 40.0% | |
| GAATACTTTGCCACGCTGAA+GGG | + | chr8_1:68110500-68110519 | None:intergenic | 45.0% | |
| TGAATACTTTGCCACGCTGA+AGG | + | chr8_1:68110501-68110520 | None:intergenic | 45.0% | |
| ACTACACTGTTCACCACTAG+TGG | + | chr8_1:68111034-68111053 | None:intergenic | 45.0% | |
| CTAGTGGTGAACAGTGTAGT+TGG | - | chr8_1:68111034-68111053 | Msa1209560:CDS | 45.0% | |
| ! | CGCCAGCACTTTGTTTGTTT+GGG | - | chr8_1:68111461-68111480 | Msa1209560:CDS | 45.0% |
| ! | GCCAGCACTTTGTTTGTTTG+GGG | - | chr8_1:68111462-68111481 | Msa1209560:CDS | 45.0% |
| ACCCCAAACAAACAAAGTGC+TGG | + | chr8_1:68111466-68111485 | None:intergenic | 45.0% | |
| CAGCCACCATATACAAAGTG+AGG | - | chr8_1:68111488-68111507 | Msa1209560:CDS | 45.0% | |
| ACAGGACGTATATACCTTGC+TGG | - | chr8_1:68111886-68111905 | Msa1209560:CDS | 45.0% | |
| CAGGACGTATATACCTTGCT+GGG | - | chr8_1:68111887-68111906 | Msa1209560:CDS | 45.0% | |
| AGGACGTATATACCTTGCTG+GGG | - | chr8_1:68111888-68111907 | Msa1209560:CDS | 45.0% | |
| GGTAACGAAGATAACAAGGC+CGG | + | chr8_1:68111929-68111948 | None:intergenic | 45.0% | |
| CACTTCTATATGGTCTTCCC+AGG | - | chr8_1:68112051-68112070 | Msa1209560:intron | 45.0% | |
| ! | GCTGAAACCATGCAGGTTTT+TGG | + | chr8_1:68112126-68112145 | None:intergenic | 45.0% |
| ! | AATTTTCCCCTGTGAAGCTG+TGG | - | chr8_1:68112149-68112168 | Msa1209560:CDS | 45.0% |
| ATTAGCTCCACAGCTTCACA+GGG | + | chr8_1:68112159-68112178 | None:intergenic | 45.0% | |
| AATTAGCTCCACAGCTTCAC+AGG | + | chr8_1:68112160-68112179 | None:intergenic | 45.0% | |
| GTCTAATGAAGCAGGTCCAT+AGG | + | chr8_1:68112520-68112539 | None:intergenic | 45.0% | |
| GACAGTGTGATTATGGTTGC+TGG | - | chr8_1:68112626-68112645 | Msa1209560:intron | 45.0% | |
| AGTGTGATTATGGTTGCTGG+AGG | - | chr8_1:68112629-68112648 | Msa1209560:intron | 45.0% | |
| ATTATGGTTGCTGGAGGTAG+TGG | - | chr8_1:68112635-68112654 | Msa1209560:intron | 45.0% | |
| ATGGACCTGAAAGTCCAGTT+TGG | - | chr8_1:68112951-68112970 | Msa1209560:CDS | 45.0% | |
| ACCTGAAAGTCCAGTTTGGA+TGG | - | chr8_1:68112955-68112974 | Msa1209560:CDS | 45.0% | |
| GTAATAGCAGCCATCCAAAC+TGG | + | chr8_1:68112968-68112987 | None:intergenic | 45.0% | |
| GTTTGGATGGCTGCTATTAC+TGG | - | chr8_1:68112968-68112987 | Msa1209560:CDS | 45.0% | |
| ATTTCCATCTGCGATGTCTG+TGG | + | chr8_1:68113211-68113230 | None:intergenic | 45.0% | |
| TCAGCTGACCTTGGATCAAT+GGG | + | chr8_1:68113238-68113257 | None:intergenic | 45.0% | |
| TTCAGCTGACCTTGGATCAA+TGG | + | chr8_1:68113239-68113258 | None:intergenic | 45.0% | |
| GAAGCGTGTGGATCTGATAT+TGG | - | chr8_1:68113428-68113447 | Msa1209560:CDS | 45.0% | |
| ! | ACTGATTCCTTCATGCTCTC+AGG | + | chr8_1:68113470-68113489 | None:intergenic | 45.0% |
| ! | TGAGAGCATGAAGGAATCAG+TGG | - | chr8_1:68113469-68113488 | Msa1209560:intron | 45.0% |
| AGAGAGTGAAGAGTGAAGCA+TGG | + | chr8_1:68113551-68113570 | None:intergenic | 45.0% | |
| GATTCTACACTTGGGAGTGA+AGG | + | chr8_1:68113653-68113672 | None:intergenic | 45.0% | |
| CATTCAAGGATAAAAGGGGG+AGG | + | chr8_1:68113751-68113770 | None:intergenic | 45.0% | |
| ! | CCCCCTTTTATCCTTGAATG+TGG | - | chr8_1:68113751-68113770 | Msa1209560:five_prime_UTR | 45.0% |
| TGCAGAAGTGGAAGGAGTTC+AGG | - | chr8_1:68110986-68111005 | Msa1209560:CDS | 50.0% | |
| ! | GCGCCAGCACTTTGTTTGTT+TGG | - | chr8_1:68111460-68111479 | Msa1209560:CDS | 50.0% |
| CAAGTGTAATCTCCCCAGCA+AGG | + | chr8_1:68111903-68111922 | None:intergenic | 50.0% | |
| ! | GGGGAGATTACACTTGTTGC+CGG | - | chr8_1:68111907-68111926 | Msa1209560:CDS | 50.0% |
| !! | GGCTAAAAAGGAGCACTCCT+GGG | + | chr8_1:68112071-68112090 | None:intergenic | 50.0% |
| !! | AGGCTAAAAAGGAGCACTCC+TGG | + | chr8_1:68112072-68112091 | None:intergenic | 50.0% |
| TTAGCTCCACAGCTTCACAG+GGG | + | chr8_1:68112158-68112177 | None:intergenic | 50.0% | |
| TAGGGCCCTTCAATTGCAAC+AGG | + | chr8_1:68112501-68112520 | None:intergenic | 50.0% | |
| GTTGCAATTGAAGGGCCCTA+TGG | - | chr8_1:68112501-68112520 | Msa1209560:intron | 50.0% | |
| GCCATCCAAACTGGACTTTC+AGG | + | chr8_1:68112959-68112978 | None:intergenic | 50.0% | |
| TGGATGGCTGCTATTACTGG+AGG | - | chr8_1:68112971-68112990 | Msa1209560:CDS | 50.0% | |
| GTCTGTGGAACGCCTTTCTT+AGG | + | chr8_1:68113196-68113215 | None:intergenic | 50.0% | |
| GGAGGCAGGCCTAACTTTAA+AGG | - | chr8_1:68113295-68113314 | Msa1209560:intron | 50.0% | |
| ! | TTGTGGTCCTGAGAGCATGA+AGG | - | chr8_1:68113460-68113479 | Msa1209560:intron | 50.0% |
| ACACTTGGGAGTGAAGGCAA+AGG | + | chr8_1:68113647-68113666 | None:intergenic | 50.0% | |
| CGTTCCACAGACATCGCAGA+TGG | - | chr8_1:68113204-68113223 | Msa1209560:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 68110488 | 68113786 | 68110488 | ID=Msa1209560;Name=Msa1209560 |
| chr8_1 | mRNA | 68110488 | 68113786 | 68110488 | ID=Msa1209560-mRNA-1;Parent=Msa1209560;Name=Msa1209560-mRNA-1;_AED=0.15;_eAED=0.15;_QI=41|0.85|0.87|1|0.85|0.87|8|200|679 |
| chr8_1 | exon | 68110488 | 68110869 | 68110488 | ID=Msa1209560-mRNA-1:exon:22642;Parent=Msa1209560-mRNA-1 |
| chr8_1 | exon | 68110958 | 68111652 | 68110958 | ID=Msa1209560-mRNA-1:exon:22641;Parent=Msa1209560-mRNA-1 |
| chr8_1 | exon | 68111727 | 68111985 | 68111727 | ID=Msa1209560-mRNA-1:exon:22640;Parent=Msa1209560-mRNA-1 |
| chr8_1 | exon | 68112079 | 68112406 | 68112079 | ID=Msa1209560-mRNA-1:exon:22639;Parent=Msa1209560-mRNA-1 |
| chr8_1 | exon | 68112870 | 68113002 | 68112870 | ID=Msa1209560-mRNA-1:exon:22638;Parent=Msa1209560-mRNA-1 |
| chr8_1 | exon | 68113092 | 68113283 | 68113092 | ID=Msa1209560-mRNA-1:exon:22637;Parent=Msa1209560-mRNA-1 |
| chr8_1 | exon | 68113378 | 68113471 | 68113378 | ID=Msa1209560-mRNA-1:exon:22636;Parent=Msa1209560-mRNA-1 |
| chr8_1 | exon | 68113589 | 68113786 | 68113589 | ID=Msa1209560-mRNA-1:exon:22635;Parent=Msa1209560-mRNA-1 |
| chr8_1 | five_prime_UTR | 68113746 | 68113786 | 68113746 | ID=Msa1209560-mRNA-1:five_prime_utr;Parent=Msa1209560-mRNA-1 |
| chr8_1 | CDS | 68113589 | 68113745 | 68113589 | ID=Msa1209560-mRNA-1:cds;Parent=Msa1209560-mRNA-1 |
| chr8_1 | CDS | 68113378 | 68113471 | 68113378 | ID=Msa1209560-mRNA-1:cds;Parent=Msa1209560-mRNA-1 |
| chr8_1 | CDS | 68113092 | 68113283 | 68113092 | ID=Msa1209560-mRNA-1:cds;Parent=Msa1209560-mRNA-1 |
| chr8_1 | CDS | 68112870 | 68113002 | 68112870 | ID=Msa1209560-mRNA-1:cds;Parent=Msa1209560-mRNA-1 |
| chr8_1 | CDS | 68112079 | 68112406 | 68112079 | ID=Msa1209560-mRNA-1:cds;Parent=Msa1209560-mRNA-1 |
| chr8_1 | CDS | 68111727 | 68111985 | 68111727 | ID=Msa1209560-mRNA-1:cds;Parent=Msa1209560-mRNA-1 |
| chr8_1 | CDS | 68110958 | 68111652 | 68110958 | ID=Msa1209560-mRNA-1:cds;Parent=Msa1209560-mRNA-1 |
| chr8_1 | CDS | 68110688 | 68110869 | 68110688 | ID=Msa1209560-mRNA-1:cds;Parent=Msa1209560-mRNA-1 |
| chr8_1 | three_prime_UTR | 68110488 | 68110687 | 68110488 | ID=Msa1209560-mRNA-1:three_prime_utr;Parent=Msa1209560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
