Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144560 | XP_003629519.1 | 93.084 | 535 | 14 | 2 | 1 | 516 | 1 | 531 | 0.0 | 951 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144560 | sp|Q8W4F0|DAR1_ARATH | 64.235 | 562 | 146 | 6 | 1 | 516 | 1 | 553 | 0.0 | 681 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144560 | G7LFK8 | 93.084 | 535 | 14 | 2 | 1 | 516 | 1 | 531 | 0.0 | 951 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0144560 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0093440 | Msa0144560 | 0.800233 | 1.586698e-48 | -8.615850e-47 |
| Msa0144560 | Msa0655650 | 0.803362 | 3.614271e-49 | -8.615850e-47 |
| Msa0144560 | Msa0912470 | 0.823059 | 1.697871e-53 | -8.615850e-47 |
| Msa0144560 | Msa1203200 | 0.955524 | 2.489844e-113 | -8.615850e-47 |
| Msa0144560 | Msa1209560 | 0.831651 | 1.479312e-55 | -8.615850e-47 |
| Msa0144560 | Msa1246040 | 0.809991 | 1.438881e-50 | -8.615850e-47 |
| Msa0144560 | Msa1330530 | 0.800709 | 1.269280e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144560 | MtrunA17_Chr8g0373781 | 93.084 | 535 | 14 | 2 | 1 | 516 | 1 | 531 | 0.0 | 951 |
| Msa0144560 | MtrunA17_Chr1g0154501 | 54.869 | 534 | 157 | 9 | 1 | 516 | 1 | 468 | 0.0 | 535 |
| Msa0144560 | MtrunA17_Chr5g0403261 | 67.112 | 374 | 83 | 4 | 1 | 342 | 1 | 366 | 9.65e-175 | 496 |
| Msa0144560 | MtrunA17_Chr5g0436051 | 60.858 | 373 | 117 | 4 | 163 | 516 | 253 | 615 | 1.63e-156 | 459 |
| Msa0144560 | MtrunA17_Chr3g0112601 | 55.854 | 410 | 158 | 5 | 126 | 516 | 107 | 512 | 5.10e-147 | 431 |
| Msa0144560 | MtrunA17_Chr5g0403301 | 66.776 | 304 | 58 | 3 | 232 | 516 | 27 | 306 | 1.38e-132 | 387 |
| Msa0144560 | MtrunA17_Chr5g0403271 | 67.949 | 156 | 28 | 2 | 380 | 516 | 1 | 153 | 1.82e-58 | 191 |
| Msa0144560 | MtrunA17_Chr5g0403291 | 64.516 | 93 | 32 | 1 | 156 | 247 | 374 | 466 | 1.03e-35 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144560 | AT4G36860.1 | 64.235 | 562 | 146 | 6 | 1 | 516 | 1 | 553 | 0.0 | 681 |
| Msa0144560 | AT4G36860.3 | 61.709 | 585 | 147 | 6 | 1 | 516 | 1 | 577 | 0.0 | 671 |
| Msa0144560 | AT4G36860.2 | 62.084 | 451 | 122 | 5 | 1 | 405 | 1 | 448 | 0.0 | 531 |
| Msa0144560 | AT1G19270.1 | 49.495 | 594 | 159 | 12 | 1 | 516 | 1 | 531 | 0.0 | 525 |
| Msa0144560 | AT1G19270.2 | 49.495 | 594 | 159 | 12 | 1 | 516 | 1 | 531 | 0.0 | 525 |
| Msa0144560 | AT2G39830.3 | 54.788 | 449 | 155 | 8 | 111 | 516 | 75 | 518 | 5.21e-162 | 470 |
| Msa0144560 | AT2G39830.1 | 61.126 | 373 | 121 | 4 | 163 | 516 | 160 | 527 | 7.28e-160 | 465 |
| Msa0144560 | AT2G39830.2 | 60.638 | 376 | 121 | 5 | 163 | 516 | 160 | 530 | 1.27e-157 | 459 |
| Msa0144560 | AT5G66610.1 | 40.936 | 513 | 247 | 12 | 28 | 510 | 65 | 551 | 5.53e-116 | 353 |
| Msa0144560 | AT2G39830.4 | 58.423 | 279 | 94 | 4 | 163 | 421 | 160 | 436 | 1.45e-113 | 343 |
| Msa0144560 | AT5G66610.3 | 44.601 | 426 | 195 | 9 | 111 | 510 | 14 | 424 | 7.77e-113 | 341 |
| Msa0144560 | AT5G66620.1 | 45.368 | 421 | 194 | 9 | 113 | 509 | 232 | 640 | 3.79e-111 | 344 |
| Msa0144560 | AT5G66620.3 | 41.752 | 491 | 241 | 12 | 44 | 509 | 161 | 631 | 1.13e-110 | 342 |
| Msa0144560 | AT5G66620.4 | 41.752 | 491 | 241 | 12 | 44 | 509 | 161 | 631 | 1.13e-110 | 342 |
| Msa0144560 | AT5G66610.2 | 38.889 | 540 | 247 | 13 | 28 | 510 | 65 | 578 | 2.38e-110 | 340 |
| Msa0144560 | AT5G17890.1 | 46.597 | 382 | 173 | 7 | 159 | 516 | 1234 | 1608 | 8.11e-96 | 318 |
| Msa0144560 | AT5G66630.1 | 43.700 | 373 | 173 | 8 | 159 | 509 | 341 | 698 | 9.29e-93 | 298 |
| Msa0144560 | AT5G66640.1 | 44.193 | 353 | 169 | 8 | 182 | 509 | 89 | 438 | 7.09e-88 | 278 |
| Msa0144560 | AT5G66640.7 | 44.193 | 353 | 169 | 8 | 182 | 509 | 89 | 438 | 7.09e-88 | 278 |
| Msa0144560 | AT5G66640.5 | 39.368 | 475 | 213 | 16 | 79 | 509 | 27 | 470 | 1.86e-87 | 277 |
| Msa0144560 | AT5G66640.4 | 44.193 | 353 | 169 | 8 | 182 | 509 | 120 | 469 | 2.34e-87 | 277 |
| Msa0144560 | AT5G66640.3 | 45.511 | 323 | 150 | 7 | 212 | 509 | 10 | 331 | 3.21e-83 | 262 |
| Msa0144560 | AT5G66640.6 | 37.155 | 471 | 225 | 17 | 79 | 509 | 27 | 466 | 3.05e-77 | 251 |
| Msa0144560 | AT5G66640.2 | 41.261 | 349 | 181 | 9 | 182 | 509 | 120 | 465 | 3.79e-77 | 250 |
| Msa0144560 | AT5G66620.2 | 43.310 | 284 | 145 | 7 | 113 | 391 | 223 | 495 | 2.86e-73 | 241 |
Find 134 sgRNAs with CRISPR-Local
Find 285 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCCTTATAGCATGATTTA+TGG | 0.186732 | 1_4:-4183234 | None:intergenic |
| AGTATAGAGCACATCCTTTC+TGG | 0.193526 | 1_4:+4183820 | Msa0144560:CDS |
| ATCCTCGTCCTGAATGTTTA+TGG | 0.214368 | 1_4:-4181850 | None:intergenic |
| GTGTCTCGATTCGGCTATTA+TGG | 0.241072 | 1_4:+4184083 | Msa0144560:CDS |
| TAAAGTTGCTGCAATTGTTT+AGG | 0.249877 | 1_4:+4185558 | Msa0144560:three_prime_UTR |
| CTGGTGTAATTATACAATTT+TGG | 0.274807 | 1_4:-4185495 | None:intergenic |
| TGTAATCTATATTTGAATAT+TGG | 0.282668 | 1_4:+4185600 | Msa0144560:three_prime_UTR |
| AACCAGGCAGTGCTCAAGTA+TGG | 0.287660 | 1_4:+4185333 | Msa0144560:CDS |
| CATATTCCTTCTTCAACTTC+AGG | 0.292654 | 1_4:-4185084 | None:intergenic |
| ATGACAAAGCTCAAATATAT+TGG | 0.297534 | 1_4:-4185447 | None:intergenic |
| CATCGACGTATCAGCCTAAA+AGG | 0.297552 | 1_4:-4184586 | None:intergenic |
| CATTCAGGACGAGGATATAC+TGG | 0.299155 | 1_4:+4181857 | Msa0144560:CDS |
| CGAGGATATACTGGGAAATA+TGG | 0.301890 | 1_4:+4181866 | Msa0144560:CDS |
| GTCCTCTGGTTTCAGGTAAA+TGG | 0.302701 | 1_4:-4184379 | None:intergenic |
| AAGCAAAGTCCTCTGGTTTC+AGG | 0.302816 | 1_4:-4184386 | None:intergenic |
| ACCAGACTCTACACAAAATA+AGG | 0.306377 | 1_4:+4185513 | Msa0144560:three_prime_UTR |
| TTTCAGTTTATGTGAATTGT+AGG | 0.314508 | 1_4:+4181747 | Msa0144560:intron |
| GCAGCAAATTCCTATGCTTT+TGG | 0.316779 | 1_4:+4184176 | Msa0144560:CDS |
| CATGCTTGGCTTAGACTAAA+AGG | 0.324541 | 1_4:+4184956 | Msa0144560:CDS |
| AACTTCCGGTCATTCGGATA+TGG | 0.336770 | 1_4:-4185374 | None:intergenic |
| ATATTTGAATATTGGCAGTT+TGG | 0.338306 | 1_4:+4185608 | Msa0144560:three_prime_UTR |
| GGCGAAAAGAGGTTTGTAAA+AGG | 0.349058 | 1_4:-4182636 | None:intergenic |
| ACCAAGTTCCTTCTCAAAAT+CGG | 0.357058 | 1_4:-4185244 | None:intergenic |
| AAAGTTGCTGCAATTGTTTA+GGG | 0.374475 | 1_4:+4185559 | Msa0144560:three_prime_UTR |
| TCATGACAGTATTCCATGTC+TGG | 0.400326 | 1_4:+4183199 | Msa0144560:intron |
| CTACAGAAAATAAGATTGTA+TGG | 0.408396 | 1_4:+4181796 | Msa0144560:exon |
| TTACCATAAATCATGCTATA+AGG | 0.408687 | 1_4:+4183231 | Msa0144560:CDS |
| GTTCGAACCCTTTAGAAACT+TGG | 0.408812 | 1_4:-4181828 | None:intergenic |
| TTAGATTCAGAGATCTATTC+CGG | 0.411303 | 1_4:+4185129 | Msa0144560:CDS |
| GTGAGCTGTCTGTCTCAATC+TGG | 0.413438 | 1_4:-4185281 | None:intergenic |
| GGTTCGAACCATAAACATTC+AGG | 0.417018 | 1_4:+4181842 | Msa0144560:CDS |
| ATAGTCAACCACATAGTATA+TGG | 0.417085 | 1_4:-4181147 | None:intergenic |
| CTGGCTTACCAAGTTTCTAA+AGG | 0.419265 | 1_4:+4181820 | Msa0144560:CDS |
| GTTACAGAGGAAGATCATAA+AGG | 0.421978 | 1_4:+4182101 | Msa0144560:CDS |
| TCGCATAATTACCTGTATAC+AGG | 0.426453 | 1_4:-4182657 | None:intergenic |
| TTGCATCAGTAACTGCTATA+AGG | 0.428044 | 1_4:-4185661 | None:intergenic |
| TGCTTCTTCACTTCCAGAGC+CGG | 0.429978 | 1_4:-4185148 | None:intergenic |
| AAATATATTGGTTGATGTAA+AGG | 0.430499 | 1_4:-4185435 | None:intergenic |
| CAGATCCCTCAAAATTCAGC+TGG | 0.436992 | 1_4:+4183789 | Msa0144560:intron |
| GCTGGCTGCAATGCCGAGAT+TGG | 0.442433 | 1_4:+4182931 | Msa0144560:CDS |
| TTCTGACAAGCAAAGTCCTC+TGG | 0.446916 | 1_4:-4184393 | None:intergenic |
| TGGCTTACCAAGTTTCTAAA+GGG | 0.451933 | 1_4:+4181821 | Msa0144560:CDS |
| TCAGAGATCTATTCCGGCTC+TGG | 0.452599 | 1_4:+4185135 | Msa0144560:CDS |
| ATGGAAAACTTCCGGTCATT+CGG | 0.453036 | 1_4:-4185380 | None:intergenic |
| TTACAGAGGAAGATCATAAA+GGG | 0.469977 | 1_4:+4182102 | Msa0144560:CDS |
| GAAAATAAGATTGTATGGGC+TGG | 0.473993 | 1_4:+4181801 | Msa0144560:exon |
| TTATAGCATGATTTATGGTA+AGG | 0.476486 | 1_4:-4183229 | None:intergenic |
| TTCCTCTACATCTTCAAAGA+AGG | 0.477132 | 1_4:+4185212 | Msa0144560:CDS |
| CGAACCTCGTAATCAGTGAT+TGG | 0.478079 | 1_4:-4183027 | None:intergenic |
| CATCTTCAAAGAAGGGTAAA+CGG | 0.478692 | 1_4:+4185220 | Msa0144560:CDS |
| AGGAAGATGAACAACTTGCC+AGG | 0.481242 | 1_4:+4182550 | Msa0144560:CDS |
| CACATGAAATGATGCATGCT+TGG | 0.482818 | 1_4:+4184942 | Msa0144560:CDS |
| TGATTGGAAGTTTGCAAGCA+TGG | 0.482821 | 1_4:-4183011 | None:intergenic |
| CAAACTTTCTTGAATTGCCC+TGG | 0.485539 | 1_4:-4182568 | None:intergenic |
| CCATGTTGCTAAAATTCAAC+AGG | 0.488050 | 1_4:+4182494 | Msa0144560:CDS |
| CGGTAGCCTGCTCCTATACT+TGG | 0.493239 | 1_4:-4184541 | None:intergenic |
| TTTATATCACCATTTCATCA+TGG | 0.493401 | 1_4:-4185399 | None:intergenic |
| GTATTTCAAGATAGAGAGGT+TGG | 0.497395 | 1_4:-4184119 | None:intergenic |
| ATTTCATCATGGAAAACTTC+CGG | 0.499366 | 1_4:-4185388 | None:intergenic |
| TGAGTTGCATGGGAGCTGTA+TGG | 0.499390 | 1_4:+4182968 | Msa0144560:CDS |
| GTGTCTTGAGTGTCTCGATT+CGG | 0.509709 | 1_4:+4184074 | Msa0144560:CDS |
| GCCCATACTTGAGCACTGCC+TGG | 0.512523 | 1_4:-4185335 | None:intergenic |
| ATATGGACACGACAGAGATT+CGG | 0.513953 | 1_4:+4181883 | Msa0144560:CDS |
| TTGTTGTAGCTGTCAGAGAA+TGG | 0.516123 | 1_4:+4183887 | Msa0144560:CDS |
| TGGATTTAGAGAGGGTAACC+AGG | 0.516593 | 1_4:+4185317 | Msa0144560:CDS |
| GAAAAGTCGAAGGAAGTACT+TGG | 0.517865 | 1_4:-4181035 | None:intergenic |
| ACCTGTATACAGGCGAAAAG+AGG | 0.519203 | 1_4:-4182647 | None:intergenic |
| ACAGACAGCTCACCAGCCTA+TGG | 0.521770 | 1_4:+4185291 | Msa0144560:CDS |
| AAACCTTCCATGGCCAATCT+CGG | 0.530954 | 1_4:-4182944 | None:intergenic |
| AGGAGACCAAGTATAGGAGC+AGG | 0.531668 | 1_4:+4184535 | Msa0144560:CDS |
| AGCTCACCAGCCTATGGAGA+TGG | 0.534287 | 1_4:+4185297 | Msa0144560:CDS |
| CTAAATCCATCTCCATAGGC+TGG | 0.535720 | 1_4:-4185303 | None:intergenic |
| TCTTGCAAACATCACACCTT+GGG | 0.542837 | 1_4:-4183264 | None:intergenic |
| TGCTCAAGTATGGGCTTAGA+CGG | 0.544906 | 1_4:+4185343 | Msa0144560:CDS |
| CTGAGGCCTGAAGTTGAAGA+AGG | 0.548038 | 1_4:+4185078 | Msa0144560:CDS |
| GTACCATCGCGCTCGTGCGA+TGG | 0.551335 | 1_4:-4183858 | None:intergenic |
| AGAAGGAATATGCCAAGTCT+TGG | 0.551472 | 1_4:+4185095 | Msa0144560:CDS |
| ACCACATATGAGCCAAGACT+TGG | 0.555232 | 1_4:-4185107 | None:intergenic |
| ATGCCGAGATTGGCCATGGA+AGG | 0.556967 | 1_4:+4182941 | Msa0144560:CDS |
| ACCAGGCAGTGCTCAAGTAT+GGG | 0.557753 | 1_4:+4185334 | Msa0144560:CDS |
| ACCCTTCTTTGAAGATGTAG+AGG | 0.559513 | 1_4:-4185214 | None:intergenic |
| TGTAAAGAGTGAAAAGTCGA+AGG | 0.562493 | 1_4:-4181045 | None:intergenic |
| TCCTCTACATCTTCAAAGAA+GGG | 0.564606 | 1_4:+4185213 | Msa0144560:CDS |
| GCCAAGTCTTGGCTCATATG+TGG | 0.565359 | 1_4:+4185106 | Msa0144560:CDS |
| TGTGATACATATGGAGCATG+AGG | 0.568043 | 1_4:-4185633 | None:intergenic |
| CTTGACCATATCCGAATGAC+CGG | 0.569122 | 1_4:+4185369 | Msa0144560:CDS |
| TGTGCTTGCAGAATCTGTGC+TGG | 0.570167 | 1_4:+4182913 | Msa0144560:intron |
| CTCTCTAAATCCATCTCCAT+AGG | 0.573587 | 1_4:-4185307 | None:intergenic |
| GGTGATGTTGAACAAAATGA+AGG | 0.574994 | 1_4:+4182468 | Msa0144560:CDS |
| TGTCTTTCCACCAAAAGCAT+AGG | 0.577574 | 1_4:-4184186 | None:intergenic |
| ATCTTGCAAACATCACACCT+TGG | 0.577586 | 1_4:-4183265 | None:intergenic |
| AGTTGCTGCAATTGTTTAGG+GGG | 0.578401 | 1_4:+4185561 | Msa0144560:three_prime_UTR |
| TTCTTTGAAGATGTAGAGGA+AGG | 0.578442 | 1_4:-4185210 | None:intergenic |
| TCTTTCAGAGGTTACAGAGG+AGG | 0.581657 | 1_4:+4182079 | Msa0144560:CDS |
| AAGTATCTGTTGCTTGATGA+CGG | 0.585206 | 1_4:+4184042 | Msa0144560:CDS |
| TCTTGTATTTCAAGATAGAG+AGG | 0.585747 | 1_4:-4184123 | None:intergenic |
| ATTCAAGAAAGTTTGAGCGT+TGG | 0.587908 | 1_4:+4182576 | Msa0144560:CDS |
| TGCAATGCCGAGATTGGCCA+TGG | 0.592397 | 1_4:+4182937 | Msa0144560:CDS |
| GAATCAGTTCGAGATGGAGG+AGG | 0.593085 | 1_4:-4182603 | None:intergenic |
| AATTGCGATCTCTCTTTCAG+AGG | 0.593587 | 1_4:+4182067 | Msa0144560:CDS |
| TACAGAAAATAAGATTGTAT+GGG | 0.593719 | 1_4:+4181797 | Msa0144560:exon |
| TCTCGATGAAGTTCAACTTG+AGG | 0.593888 | 1_4:+4182530 | Msa0144560:CDS |
| CATGCATCATTTCATGTGCT+AGG | 0.596530 | 1_4:-4184937 | None:intergenic |
| AATATAGAATCAGTTCGAGA+TGG | 0.599550 | 1_4:-4182609 | None:intergenic |
| CTCTCTTTCAGAGGTTACAG+AGG | 0.604714 | 1_4:+4182076 | Msa0144560:CDS |
| ATAGAATCAGTTCGAGATGG+AGG | 0.607782 | 1_4:-4182606 | None:intergenic |
| AGATTCTGAATCTGAAGATG+AGG | 0.610392 | 1_4:+4182407 | Msa0144560:CDS |
| TCATCTTCCTCGTCATCAAG+TGG | 0.612402 | 1_4:-4182438 | None:intergenic |
| ATAAGGAGCTGCATCACCCA+AGG | 0.612966 | 1_4:+4183248 | Msa0144560:CDS |
| CTATGGAGATGGATTTAGAG+AGG | 0.615579 | 1_4:+4185308 | Msa0144560:CDS |
| GTAAGGACGATTTCCAGACA+TGG | 0.619835 | 1_4:-4183212 | None:intergenic |
| ACAAGCACTGAATGAAGCCA+TGG | 0.620234 | 1_4:+4184206 | Msa0144560:CDS |
| CGACAGGCTATGGCAATCTG+AGG | 0.620280 | 1_4:+4185061 | Msa0144560:intron |
| GGAAGATGAACAACTTGCCA+GGG | 0.625754 | 1_4:+4182551 | Msa0144560:CDS |
| GCACTGAATGAAGCCATGGA+GGG | 0.628049 | 1_4:+4184210 | Msa0144560:CDS |
| AACCATAAACATTCAGGACG+AGG | 0.628809 | 1_4:+4181848 | Msa0144560:CDS |
| ATTCAGGACGAGGATATACT+GGG | 0.630545 | 1_4:+4181858 | Msa0144560:CDS |
| AAGTTGCTGCAATTGTTTAG+GGG | 0.637012 | 1_4:+4185560 | Msa0144560:three_prime_UTR |
| TATGGAGATGGATTTAGAGA+GGG | 0.638780 | 1_4:+4185309 | Msa0144560:CDS |
| GGTTACAGAGGAGGTTACAG+AGG | 0.639025 | 1_4:+4182088 | Msa0144560:CDS |
| GTGATGTTGAACAAAATGAA+GGG | 0.641221 | 1_4:+4182469 | Msa0144560:CDS |
| AGTTCTAACCATATACTATG+TGG | 0.644274 | 1_4:+4181139 | Msa0144560:five_prime_UTR |
| GATGTGCTCTATACTCAATG+AGG | 0.649586 | 1_4:-4183812 | None:intergenic |
| CAGTTATCATATCTATGACA+CGG | 0.652727 | 1_4:-4184561 | None:intergenic |
| AGCACTGAATGAAGCCATGG+AGG | 0.655277 | 1_4:+4184209 | Msa0144560:CDS |
| TGTCCATCGCACGAGCGCGA+TGG | 0.655772 | 1_4:+4183855 | Msa0144560:CDS |
| ACTTCCAATCACTGATTACG+AGG | 0.658587 | 1_4:+4183023 | Msa0144560:CDS |
| GTTGTGTCCACTTGATGACG+AGG | 0.696227 | 1_4:+4182431 | Msa0144560:CDS |
| TTGTAGCTGTCAGAGAATGG+AGG | 0.698487 | 1_4:+4183890 | Msa0144560:CDS |
| GACGAGGAAGATGAGCATGT+TGG | 0.698722 | 1_4:+4182447 | Msa0144560:CDS |
| CACCATTTACCTGAAACCAG+AGG | 0.704277 | 1_4:+4184377 | Msa0144560:CDS |
| CTCTGACAGCTACAACAACG+AGG | 0.711035 | 1_4:-4183882 | None:intergenic |
| TGATGTTGAACAAAATGAAG+GGG | 0.716331 | 1_4:+4182470 | Msa0144560:CDS |
| GGATAATCATGATAATACCG+CGG | 0.766773 | 1_4:+4181904 | Msa0144560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAATCAAATATTTATAAAA+TGG | - | chr1_4:4182310-4182329 | None:intergenic | 10.0% |
| !! | TATAAATATTTGATTAGAAA+AGG | + | chr1_4:4182313-4182332 | Msa0144560:intron | 10.0% |
| !! | TGTTAATATATTATATAAAG+GGG | - | chr1_4:4183750-4183769 | None:intergenic | 10.0% |
| !! | GATGTTAATATATTATATAA+AGG | - | chr1_4:4183752-4183771 | None:intergenic | 10.0% |
| !!! | TTCTCTTTCATTTAATTTTT+TGG | + | chr1_4:4181702-4181721 | Msa0144560:intron | 15.0% |
| !!! | TTTCTTAGATTTTGATAATT+AGG | + | chr1_4:4183573-4183592 | Msa0144560:intron | 15.0% |
| !!! | TTCAAGGATTTTATATTTAT+AGG | + | chr1_4:4184897-4184916 | Msa0144560:intron | 15.0% |
| !!! | TTATACAATTTTGGAATATT+TGG | - | chr1_4:4185489-4185508 | None:intergenic | 15.0% |
| !! | TGTAATCTATATTTGAATAT+TGG | + | chr1_4:4185600-4185619 | Msa0144560:three_prime_UTR | 15.0% |
| !!! | TTCTAACAAATTTTCAATCA+TGG | + | chr1_4:4181303-4181322 | Msa0144560:intron | 20.0% |
| !!! | TCTAACAAATTTTCAATCAT+GGG | + | chr1_4:4181304-4181323 | Msa0144560:intron | 20.0% |
| !!! | TTTTCTTTATCCTTTTTTCT+AGG | + | chr1_4:4181397-4181416 | Msa0144560:intron | 20.0% |
| !! | ATTAATTATCCAGCTATATT+TGG | + | chr1_4:4181463-4181482 | Msa0144560:intron | 20.0% |
| !! | CTCTAAATGTATAATTCAAA+AGG | - | chr1_4:4181676-4181695 | None:intergenic | 20.0% |
| !!! | TGAATTATACATTTAGAGTA+AGG | + | chr1_4:4181678-4181697 | Msa0144560:intron | 20.0% |
| !! | TACAGAAAATAAGATTGTAT+GGG | + | chr1_4:4181797-4181816 | Msa0144560:exon | 20.0% |
| !!! | TTGCTTAGAACATATATTTT+AGG | - | chr1_4:4182231-4182250 | None:intergenic | 20.0% |
| !!! | TTTCTACGATTTTACATATT+AGG | - | chr1_4:4182779-4182798 | None:intergenic | 20.0% |
| !! | TATTGACAACAAAAAAATCA+AGG | - | chr1_4:4183153-4183172 | None:intergenic | 20.0% |
| !!! | TTTTCACAATTACTTTTAGA+AGG | + | chr1_4:4183443-4183462 | Msa0144560:intron | 20.0% |
| !!! | GAAATACAAGAATTTTATGA+AGG | + | chr1_4:4184135-4184154 | Msa0144560:CDS | 20.0% |
| !!! | ATTTTTCAATGTTGATTGTA+GGG | + | chr1_4:4184347-4184366 | Msa0144560:intron | 20.0% |
| !!! | TTTTGTAATTCCAGATTTTA+AGG | + | chr1_4:4184515-4184534 | Msa0144560:intron | 20.0% |
| !! | AAGAAAAAAAAAGATGGTAT+CGG | - | chr1_4:4184659-4184678 | None:intergenic | 20.0% |
| !! | AAGATGAAGAAAAAAAAAGA+TGG | - | chr1_4:4184665-4184684 | None:intergenic | 20.0% |
| !! | TATATTTATAGGTTACTAAC+AGG | + | chr1_4:4184908-4184927 | Msa0144560:intron | 20.0% |
| !! | TTTATATTCCATTACTAAGT+TGG | + | chr1_4:4185017-4185036 | Msa0144560:intron | 20.0% |
| !!! | AAATATATTGGTTGATGTAA+AGG | - | chr1_4:4185438-4185457 | None:intergenic | 20.0% |
| ! | AACATTACCAGAAAAAGATT+AGG | - | chr1_4:4181234-4181253 | None:intergenic | 25.0% |
| !! | GTGTTTTCAATCAATATTGA+TGG | + | chr1_4:4181353-4181372 | Msa0144560:intron | 25.0% |
| !! | TTTTCAATCAATATTGATGG+TGG | + | chr1_4:4181356-4181375 | Msa0144560:intron | 25.0% |
| !! | TTTCAATCAATATTGATGGT+GGG | + | chr1_4:4181357-4181376 | Msa0144560:intron | 25.0% |
| ! | TGTTTGATTGGAATTGAATT+TGG | + | chr1_4:4181589-4181608 | Msa0144560:intron | 25.0% |
| ! | ATTGGAATTGAATTTGGATT+TGG | + | chr1_4:4181595-4181614 | Msa0144560:intron | 25.0% |
| ! | ATTGAATTTGGATTTGGATT+TGG | + | chr1_4:4181601-4181620 | Msa0144560:intron | 25.0% |
| ! | TTTCAGTTTATGTGAATTGT+AGG | + | chr1_4:4181747-4181766 | Msa0144560:intron | 25.0% |
| !!! | CATACAATCTTATTTTCTGT+AGG | - | chr1_4:4181798-4181817 | None:intergenic | 25.0% |
| ! | CTACAGAAAATAAGATTGTA+TGG | + | chr1_4:4181796-4181815 | Msa0144560:exon | 25.0% |
| ! | CATAAAGGGAAAAAAGTTAT+CGG | + | chr1_4:4182116-4182135 | Msa0144560:CDS | 25.0% |
| ! | TTTGTGTAACATTGTTTGAA+TGG | + | chr1_4:4182179-4182198 | Msa0144560:intron | 25.0% |
| !!! | GAACATATATTTTAGGTATC+CGG | - | chr1_4:4182224-4182243 | None:intergenic | 25.0% |
| ! | GAATTTCACTATTTGTTCAA+TGG | - | chr1_4:4182288-4182307 | None:intergenic | 25.0% |
| ! | TCTTTAGCAAATTCGATATA+TGG | - | chr1_4:4182722-4182741 | None:intergenic | 25.0% |
| !!! | CTAAAAAGTTTGCTTTTCAT+AGG | + | chr1_4:4182838-4182857 | Msa0144560:intron | 25.0% |
| !! | ATAAAAGCATAGACTAAAAC+CGG | + | chr1_4:4182879-4182898 | Msa0144560:intron | 25.0% |
| ! | TTATAGCATGATTTATGGTA+AGG | - | chr1_4:4183232-4183251 | None:intergenic | 25.0% |
| ! | TTACCATAAATCATGCTATA+AGG | + | chr1_4:4183231-4183250 | Msa0144560:CDS | 25.0% |
| !!! | TAATGTTTTGTTCTTTTCAC+AGG | + | chr1_4:4183502-4183521 | Msa0144560:intron | 25.0% |
| ! | AAATATAATACGCCTATATC+CGG | - | chr1_4:4183556-4183575 | None:intergenic | 25.0% |
| !! | TGCATAGTATTGAAAAATCA+CGG | - | chr1_4:4183658-4183677 | None:intergenic | 25.0% |
| !! | TCATCTCACAATATTTTATC+AGG | + | chr1_4:4183922-4183941 | Msa0144560:intron | 25.0% |
| ! | ATCAACATTGAAAAATCCAA+AGG | - | chr1_4:4184343-4184362 | None:intergenic | 25.0% |
| !!! | GATTTTTCAATGTTGATTGT+AGG | + | chr1_4:4184346-4184365 | Msa0144560:intron | 25.0% |
| ! | AACATGATTGCAATAATCAT+TGG | - | chr1_4:4184752-4184771 | None:intergenic | 25.0% |
| !!! | TTCAACATTGTTTTGATCAT+TGG | - | chr1_4:4184995-4185014 | None:intergenic | 25.0% |
| ! | TTTATATCACCATTTCATCA+TGG | - | chr1_4:4185402-4185421 | None:intergenic | 25.0% |
| ! | ATGACAAAGCTCAAATATAT+TGG | - | chr1_4:4185450-4185469 | None:intergenic | 25.0% |
| !! | CTGGTGTAATTATACAATTT+TGG | - | chr1_4:4185498-4185517 | None:intergenic | 25.0% |
| ! | ATATTTGAATATTGGCAGTT+TGG | + | chr1_4:4185608-4185627 | Msa0144560:three_prime_UTR | 25.0% |
| !!! | AAGGTATTTTGTGATACATA+TGG | - | chr1_4:4185645-4185664 | None:intergenic | 25.0% |
| CACTCATAAAAAGCTAATTC+TGG | + | chr1_4:4181066-4181085 | Msa0144560:five_prime_UTR | 30.0% | |
| ! | AGTTCTAACCATATACTATG+TGG | + | chr1_4:4181139-4181158 | Msa0144560:five_prime_UTR | 30.0% |
| ATAGTCAACCACATAGTATA+TGG | - | chr1_4:4181150-4181169 | None:intergenic | 30.0% | |
| ! | TCTGATTCCTAATCTTTTTC+TGG | + | chr1_4:4181224-4181243 | Msa0144560:five_prime_UTR | 30.0% |
| !! | TTCAATCAATATTGATGGTG+GGG | + | chr1_4:4181358-4181377 | Msa0144560:intron | 30.0% |
| TACTATCAAGTGTGTTTGAT+TGG | + | chr1_4:4181577-4181596 | Msa0144560:intron | 30.0% | |
| !!! | CAATCTTATTTTCTGTAGGT+CGG | - | chr1_4:4181794-4181813 | None:intergenic | 30.0% |
| TTACAGAGGAAGATCATAAA+GGG | + | chr1_4:4182102-4182121 | Msa0144560:CDS | 30.0% | |
| ! | AGATTTATGCTTTTGCAAGA+CGG | + | chr1_4:4182141-4182160 | Msa0144560:intron | 30.0% |
| ! | AATTAGTGTTTTCTGTGTAC+CGG | + | chr1_4:4182202-4182221 | Msa0144560:intron | 30.0% |
| !!! | AGAAAAGGTTACCTCTTTTT+TGG | + | chr1_4:4182328-4182347 | Msa0144560:intron | 30.0% |
| !!! | GAAAAGGTTACCTCTTTTTT+GGG | + | chr1_4:4182329-4182348 | Msa0144560:intron | 30.0% |
| GTGATGTTGAACAAAATGAA+GGG | + | chr1_4:4182469-4182488 | Msa0144560:CDS | 30.0% | |
| TGATGTTGAACAAAATGAAG+GGG | + | chr1_4:4182470-4182489 | Msa0144560:CDS | 30.0% | |
| AATATAGAATCAGTTCGAGA+TGG | - | chr1_4:4182612-4182631 | None:intergenic | 30.0% | |
| TCGATATATGGTATTTAGAC+TGG | - | chr1_4:4182710-4182729 | None:intergenic | 30.0% | |
| AGATCACTGCATATGATAAA+AGG | + | chr1_4:4182739-4182758 | Msa0144560:intron | 30.0% | |
| GATCACTGCATATGATAAAA+GGG | + | chr1_4:4182740-4182759 | Msa0144560:intron | 30.0% | |
| ATCACTGCATATGATAAAAG+GGG | + | chr1_4:4182741-4182760 | Msa0144560:intron | 30.0% | |
| TGATAAAAGGGGAAAATGAT+TGG | + | chr1_4:4182752-4182771 | Msa0144560:intron | 30.0% | |
| GATAAAAGGGGAAAATGATT+GGG | + | chr1_4:4182753-4182772 | Msa0144560:intron | 30.0% | |
| TGGAATACTGTCATGAATAA+AGG | - | chr1_4:4183195-4183214 | None:intergenic | 30.0% | |
| TGAAAACAGATCAAAGTCAA+TGG | - | chr1_4:4183429-4183448 | None:intergenic | 30.0% | |
| ! | TTATGATTTGCCAGAAATTG+TGG | + | chr1_4:4183596-4183615 | Msa0144560:intron | 30.0% |
| TCTAGAAATAACCAGTTCTT+AGG | + | chr1_4:4183709-4183728 | Msa0144560:intron | 30.0% | |
| TCTTGTATTTCAAGATAGAG+AGG | - | chr1_4:4184126-4184145 | None:intergenic | 30.0% | |
| ATCCAGAGAAGAGAAATAAA+AGG | - | chr1_4:4184285-4184304 | None:intergenic | 30.0% | |
| AAGTAAAACATCCTTACAGT+GGG | - | chr1_4:4184431-4184450 | None:intergenic | 30.0% | |
| !! | ATTTTAAGGAGACCAAGTAT+AGG | + | chr1_4:4184529-4184548 | Msa0144560:CDS | 30.0% |
| CAGTTATCATATCTATGACA+CGG | - | chr1_4:4184564-4184583 | None:intergenic | 30.0% | |
| ! | ATATGATAACTGAGCCTTTT+AGG | + | chr1_4:4184572-4184591 | Msa0144560:CDS | 30.0% |
| ! | AAAAAAAAGATGGTATCGGA+AGG | - | chr1_4:4184655-4184674 | None:intergenic | 30.0% |
| !! | GGAGAATGATCCTTTTAATT+TGG | + | chr1_4:4184699-4184718 | Msa0144560:intron | 30.0% |
| !!! | GATCCTTTTAATTTGGAGTT+TGG | + | chr1_4:4184706-4184725 | Msa0144560:intron | 30.0% |
| !!! | CTTTTAATTTGGAGTTTGGT+CGG | + | chr1_4:4184710-4184729 | Msa0144560:intron | 30.0% |
| TAGTTATCGAGCTAAAGTTA+AGG | - | chr1_4:4184804-4184823 | None:intergenic | 30.0% | |
| AGATGGTAATTCAAGTGATT+TGG | - | chr1_4:4184833-4184852 | None:intergenic | 30.0% | |
| CTGTTGAGCATAAAAATAGA+TGG | - | chr1_4:4184850-4184869 | None:intergenic | 30.0% | |
| GAAATCTGGTACATAATTCA+AGG | + | chr1_4:4184881-4184900 | Msa0144560:intron | 30.0% | |
| TTAGATTCAGAGATCTATTC+CGG | + | chr1_4:4185129-4185148 | Msa0144560:CDS | 30.0% | |
| ATTTCATCATGGAAAACTTC+CGG | - | chr1_4:4185391-4185410 | None:intergenic | 30.0% | |
| TAAAGTTGCTGCAATTGTTT+AGG | + | chr1_4:4185558-4185577 | Msa0144560:three_prime_UTR | 30.0% | |
| AAAGTTGCTGCAATTGTTTA+GGG | + | chr1_4:4185559-4185578 | Msa0144560:three_prime_UTR | 30.0% | |
| ATCACTGTCCAAGTAAAAAT+TGG | + | chr1_4:4185746-4185765 | Msa0144560:three_prime_UTR | 30.0% | |
| TGTAAAGAGTGAAAAGTCGA+AGG | - | chr1_4:4181048-4181067 | None:intergenic | 35.0% | |
| ACACAGCAAGCATAAACAAA+AGG | - | chr1_4:4181337-4181356 | None:intergenic | 35.0% | |
| ATTGCACATGCCTAGAAAAA+AGG | - | chr1_4:4181410-4181429 | None:intergenic | 35.0% | |
| AAGCAACAACCAAATATAGC+TGG | - | chr1_4:4181475-4181494 | None:intergenic | 35.0% | |
| !! | TTGGTTGTTGCTTTGCATAA+TGG | + | chr1_4:4181482-4181501 | Msa0144560:intron | 35.0% |
| ! | TGGATTTGGATTTGGAATTC+AGG | + | chr1_4:4181609-4181628 | Msa0144560:intron | 35.0% |
| GAAAATAAGATTGTATGGGC+TGG | + | chr1_4:4181801-4181820 | Msa0144560:exon | 35.0% | |
| TGGCTTACCAAGTTTCTAAA+GGG | + | chr1_4:4181821-4181840 | Msa0144560:CDS | 35.0% | |
| GGATAATCATGATAATACCG+CGG | + | chr1_4:4181904-4181923 | Msa0144560:CDS | 35.0% | |
| AGCATAAACTGTTATTACCG+CGG | - | chr1_4:4181924-4181943 | None:intergenic | 35.0% | |
| GTTACAGAGGAAGATCATAA+AGG | + | chr1_4:4182101-4182120 | Msa0144560:CDS | 35.0% | |
| ! | GACGTTTTTAAACACTTCAC+CGG | - | chr1_4:4182355-4182374 | None:intergenic | 35.0% |
| GATTCAGAATCTTCTTCTGA+AGG | - | chr1_4:4182399-4182418 | None:intergenic | 35.0% | |
| AGATTCTGAATCTGAAGATG+AGG | + | chr1_4:4182407-4182426 | Msa0144560:CDS | 35.0% | |
| GGTGATGTTGAACAAAATGA+AGG | + | chr1_4:4182468-4182487 | Msa0144560:CDS | 35.0% | |
| !! | CCTGTTGAATTTTAGCAACA+TGG | - | chr1_4:4182497-4182516 | None:intergenic | 35.0% |
| CCATGTTGCTAAAATTCAAC+AGG | + | chr1_4:4182494-4182513 | Msa0144560:CDS | 35.0% | |
| ATTCAAGAAAGTTTGAGCGT+TGG | + | chr1_4:4182576-4182595 | Msa0144560:CDS | 35.0% | |
| TCGCATAATTACCTGTATAC+AGG | - | chr1_4:4182660-4182679 | None:intergenic | 35.0% | |
| CTAAATTGTTGTCACCATAG+AGG | - | chr1_4:4182816-4182835 | None:intergenic | 35.0% | |
| ! | CAAGCACATTTTGCATTAAC+CGG | - | chr1_4:4182901-4182920 | None:intergenic | 35.0% |
| GCTCCTTATAGCATGATTTA+TGG | - | chr1_4:4183237-4183256 | None:intergenic | 35.0% | |
| ATTTCACTACATTATGTGCG+AGG | + | chr1_4:4183399-4183418 | Msa0144560:intron | 35.0% | |
| ACTTAAATCCCTTCAAGAAC+CGG | + | chr1_4:4183534-4183553 | Msa0144560:intron | 35.0% | |
| TGATGTCATAACCTAAGAAC+TGG | - | chr1_4:4183723-4183742 | None:intergenic | 35.0% | |
| !! | CAGTATTTTTGTAGCCAGAA+AGG | - | chr1_4:4183837-4183856 | None:intergenic | 35.0% |
| !! | GTGTTTTCTTCTTGGTAACA+AGG | - | chr1_4:4183948-4183967 | None:intergenic | 35.0% |
| AGTTGAGAAAACACGATAGA+GGG | - | chr1_4:4183970-4183989 | None:intergenic | 35.0% | |
| AAGTTGAGAAAACACGATAG+AGG | - | chr1_4:4183971-4183990 | None:intergenic | 35.0% | |
| ! | AAGTATCTGTTGCTTGATGA+CGG | + | chr1_4:4184042-4184061 | Msa0144560:CDS | 35.0% |
| GTATTTCAAGATAGAGAGGT+TGG | - | chr1_4:4184122-4184141 | None:intergenic | 35.0% | |
| !! | TGCCTTTTATTTCTCTTCTC+TGG | + | chr1_4:4184280-4184299 | Msa0144560:intron | 35.0% |
| AAAATCCAAAATCAGGACAG+TGG | - | chr1_4:4184320-4184339 | None:intergenic | 35.0% | |
| CCAAAGGAAAATCCAAAATC+AGG | - | chr1_4:4184327-4184346 | None:intergenic | 35.0% | |
| ! | CCTGATTTTGGATTTTCCTT+TGG | + | chr1_4:4184324-4184343 | Msa0144560:intron | 35.0% |
| AGTAAAACATCCTTACAGTG+GGG | - | chr1_4:4184430-4184449 | None:intergenic | 35.0% | |
| CAAGTAAAACATCCTTACAG+TGG | - | chr1_4:4184432-4184451 | None:intergenic | 35.0% | |
| TACTTGGTCTCCTTAAAATC+TGG | - | chr1_4:4184528-4184547 | None:intergenic | 35.0% | |
| !!! | ACAGCCATACTTGTTTTGTA+TGG | + | chr1_4:4184616-4184635 | Msa0144560:intron | 35.0% |
| AAGGCCATACAAAACAAGTA+TGG | - | chr1_4:4184623-4184642 | None:intergenic | 35.0% | |
| CGACCAAACTCCAAATTAAA+AGG | - | chr1_4:4184712-4184731 | None:intergenic | 35.0% | |
| ! | CAGTACTTGCATTTGAAATC+TGG | + | chr1_4:4184867-4184886 | Msa0144560:intron | 35.0% |
| GAGATTGTCCAACTTAGTAA+TGG | - | chr1_4:4185028-4185047 | None:intergenic | 35.0% | |
| !! | CTCTTCTGTTTATTTTCGAC+AGG | + | chr1_4:4185045-4185064 | Msa0144560:intron | 35.0% |
| !! | TGTTTATTTTCGACAGGCTA+TGG | + | chr1_4:4185051-4185070 | Msa0144560:intron | 35.0% |
| CATATTCCTTCTTCAACTTC+AGG | - | chr1_4:4185087-4185106 | None:intergenic | 35.0% | |
| ! | TTCTTTGAAGATGTAGAGGA+AGG | - | chr1_4:4185213-4185232 | None:intergenic | 35.0% |
| TTCCTCTACATCTTCAAAGA+AGG | + | chr1_4:4185212-4185231 | Msa0144560:CDS | 35.0% | |
| TCCTCTACATCTTCAAAGAA+GGG | + | chr1_4:4185213-4185232 | Msa0144560:CDS | 35.0% | |
| CATCTTCAAAGAAGGGTAAA+CGG | + | chr1_4:4185220-4185239 | Msa0144560:CDS | 35.0% | |
| ACCAAGTTCCTTCTCAAAAT+CGG | - | chr1_4:4185247-4185266 | None:intergenic | 35.0% | |
| ! | TATGGAGATGGATTTAGAGA+GGG | + | chr1_4:4185309-4185328 | Msa0144560:CDS | 35.0% |
| ! | GGAAGTTTTCCATGATGAAA+TGG | + | chr1_4:4185390-4185409 | Msa0144560:exon | 35.0% |
| ACCAGACTCTACACAAAATA+AGG | + | chr1_4:4185513-4185532 | Msa0144560:three_prime_UTR | 35.0% | |
| !!! | TCCTTATTTTGTGTAGAGTC+TGG | - | chr1_4:4185517-4185536 | None:intergenic | 35.0% |
| AAGTTGCTGCAATTGTTTAG+GGG | + | chr1_4:4185560-4185579 | Msa0144560:three_prime_UTR | 35.0% | |
| TTGCATCAGTAACTGCTATA+AGG | - | chr1_4:4185664-4185683 | None:intergenic | 35.0% | |
| !! | GAAAAGTCGAAGGAAGTACT+TGG | - | chr1_4:4181038-4181057 | None:intergenic | 40.0% |
| !! | ATCAATATTGATGGTGGGGT+TGG | + | chr1_4:4181362-4181381 | Msa0144560:intron | 40.0% |
| !!! | TGTAGGTGAATTTTGAGACG+AGG | + | chr1_4:4181764-4181783 | Msa0144560:five_prime_UTR | 40.0% |
| CTGGCTTACCAAGTTTCTAA+AGG | + | chr1_4:4181820-4181839 | Msa0144560:CDS | 40.0% | |
| ! | GTTCGAACCCTTTAGAAACT+TGG | - | chr1_4:4181831-4181850 | None:intergenic | 40.0% |
| GGTTCGAACCATAAACATTC+AGG | + | chr1_4:4181842-4181861 | Msa0144560:CDS | 40.0% | |
| AACCATAAACATTCAGGACG+AGG | + | chr1_4:4181848-4181867 | Msa0144560:CDS | 40.0% | |
| ATCCTCGTCCTGAATGTTTA+TGG | - | chr1_4:4181853-4181872 | None:intergenic | 40.0% | |
| ATTCAGGACGAGGATATACT+GGG | + | chr1_4:4181858-4181877 | Msa0144560:CDS | 40.0% | |
| CGAGGATATACTGGGAAATA+TGG | + | chr1_4:4181866-4181885 | Msa0144560:CDS | 40.0% | |
| ATATGGACACGACAGAGATT+CGG | + | chr1_4:4181883-4181902 | Msa0144560:CDS | 40.0% | |
| AGAGACTGAAGTTGCAATAG+TGG | + | chr1_4:4181987-4182006 | Msa0144560:intron | 40.0% | |
| TAGTGGCAAATTCTGAGTGT+AGG | + | chr1_4:4182004-4182023 | Msa0144560:intron | 40.0% | |
| AATTGCGATCTCTCTTTCAG+AGG | + | chr1_4:4182067-4182086 | Msa0144560:CDS | 40.0% | |
| ! | TTTATGCTTTTGCAAGACGG+TGG | + | chr1_4:4182144-4182163 | Msa0144560:intron | 40.0% |
| TCTCGATGAAGTTCAACTTG+AGG | + | chr1_4:4182530-4182549 | Msa0144560:CDS | 40.0% | |
| CAAACTTTCTTGAATTGCCC+TGG | - | chr1_4:4182571-4182590 | None:intergenic | 40.0% | |
| ATAGAATCAGTTCGAGATGG+AGG | - | chr1_4:4182609-4182628 | None:intergenic | 40.0% | |
| GGCGAAAAGAGGTTTGTAAA+AGG | - | chr1_4:4182639-4182658 | None:intergenic | 40.0% | |
| AACTGAAATAGCCACCTCTA+TGG | + | chr1_4:4182799-4182818 | Msa0144560:intron | 40.0% | |
| AATTGTTGTCACCATAGAGG+TGG | - | chr1_4:4182813-4182832 | None:intergenic | 40.0% | |
| TGCAACTCAAAAACCTTCCA+TGG | - | chr1_4:4182957-4182976 | None:intergenic | 40.0% | |
| !!! | TGGAAGGTTTTTGAGTTGCA+TGG | + | chr1_4:4182957-4182976 | Msa0144560:CDS | 40.0% |
| !!! | GGAAGGTTTTTGAGTTGCAT+GGG | + | chr1_4:4182958-4182977 | Msa0144560:CDS | 40.0% |
| GCATGGCAACAAAAACATTC+TGG | - | chr1_4:4182997-4183016 | None:intergenic | 40.0% | |
| TGATTGGAAGTTTGCAAGCA+TGG | - | chr1_4:4183014-4183033 | None:intergenic | 40.0% | |
| ! | ACTTCCAATCACTGATTACG+AGG | + | chr1_4:4183023-4183042 | Msa0144560:CDS | 40.0% |
| TCATGACAGTATTCCATGTC+TGG | + | chr1_4:4183199-4183218 | Msa0144560:intron | 40.0% | |
| TCTTGCAAACATCACACCTT+GGG | - | chr1_4:4183267-4183286 | None:intergenic | 40.0% | |
| ATCTTGCAAACATCACACCT+TGG | - | chr1_4:4183268-4183287 | None:intergenic | 40.0% | |
| ! | TTTGTCACTTCTGTTGTGCT+TGG | + | chr1_4:4183335-4183354 | Msa0144560:intron | 40.0% |
| TGCTGTTGATCCACAATTTC+TGG | - | chr1_4:4183609-4183628 | None:intergenic | 40.0% | |
| GATGTGCTCTATACTCAATG+AGG | - | chr1_4:4183815-4183834 | None:intergenic | 40.0% | |
| AGTATAGAGCACATCCTTTC+TGG | + | chr1_4:4183820-4183839 | Msa0144560:CDS | 40.0% | |
| TTGTTGTAGCTGTCAGAGAA+TGG | + | chr1_4:4183887-4183906 | Msa0144560:CDS | 40.0% | |
| !!! | GATAGAGGGTGTTTTCTTCT+TGG | - | chr1_4:4183956-4183975 | None:intergenic | 40.0% |
| ! | GCAGCAAATTCCTATGCTTT+TGG | + | chr1_4:4184176-4184195 | Msa0144560:CDS | 40.0% |
| ! | GCAAATTCCTATGCTTTTGG+TGG | + | chr1_4:4184179-4184198 | Msa0144560:CDS | 40.0% |
| ! | TGTCTTTCCACCAAAAGCAT+AGG | - | chr1_4:4184189-4184208 | None:intergenic | 40.0% |
| ! | TCTTTCCACTGTCCTGATTT+TGG | + | chr1_4:4184312-4184331 | Msa0144560:intron | 40.0% |
| !! | TTGTTTTGTATGGCCTTCCT+AGG | + | chr1_4:4184626-4184645 | Msa0144560:intron | 40.0% |
| TCATCTTAACCCTCTGATTC+AGG | + | chr1_4:4184678-4184697 | Msa0144560:intron | 40.0% | |
| GATCATTCTCCTGAATCAGA+GGG | - | chr1_4:4184690-4184709 | None:intergenic | 40.0% | |
| CATGCATCATTTCATGTGCT+AGG | - | chr1_4:4184940-4184959 | None:intergenic | 40.0% | |
| CACATGAAATGATGCATGCT+TGG | + | chr1_4:4184942-4184961 | Msa0144560:CDS | 40.0% | |
| CATGCTTGGCTTAGACTAAA+AGG | + | chr1_4:4184956-4184975 | Msa0144560:CDS | 40.0% | |
| AGAAGGAATATGCCAAGTCT+TGG | + | chr1_4:4185095-4185114 | Msa0144560:CDS | 40.0% | |
| ! | ACCCTTCTTTGAAGATGTAG+AGG | - | chr1_4:4185217-4185236 | None:intergenic | 40.0% |
| !! | TAAACGGTCCGATTTTGAGA+AGG | + | chr1_4:4185236-4185255 | Msa0144560:CDS | 40.0% |
| !! | TCCGATTTTGAGAAGGAACT+TGG | + | chr1_4:4185243-4185262 | Msa0144560:CDS | 40.0% |
| CTCTCTAAATCCATCTCCAT+AGG | - | chr1_4:4185310-4185329 | None:intergenic | 40.0% | |
| ! | CTATGGAGATGGATTTAGAG+AGG | + | chr1_4:4185308-4185327 | Msa0144560:CDS | 40.0% |
| ATGGAAAACTTCCGGTCATT+CGG | - | chr1_4:4185383-4185402 | None:intergenic | 40.0% | |
| AGTTGCTGCAATTGTTTAGG+GGG | + | chr1_4:4185561-4185580 | Msa0144560:three_prime_UTR | 40.0% | |
| TGTGATACATATGGAGCATG+AGG | - | chr1_4:4185636-4185655 | None:intergenic | 40.0% | |
| CATTCAGGACGAGGATATAC+TGG | + | chr1_4:4181857-4181876 | Msa0144560:CDS | 45.0% | |
| CTCTCTTTCAGAGGTTACAG+AGG | + | chr1_4:4182076-4182095 | Msa0144560:CDS | 45.0% | |
| TCTTTCAGAGGTTACAGAGG+AGG | + | chr1_4:4182079-4182098 | Msa0144560:CDS | 45.0% | |
| !!! | AGGTTACCTCTTTTTTGGGC+CGG | + | chr1_4:4182333-4182352 | Msa0144560:intron | 45.0% |
| TCATCTTCCTCGTCATCAAG+TGG | - | chr1_4:4182441-4182460 | None:intergenic | 45.0% | |
| AGGAAGATGAACAACTTGCC+AGG | + | chr1_4:4182550-4182569 | Msa0144560:CDS | 45.0% | |
| GGAAGATGAACAACTTGCCA+GGG | + | chr1_4:4182551-4182570 | Msa0144560:CDS | 45.0% | |
| ! | ACCTCTTTTCGCCTGTATAC+AGG | + | chr1_4:4182646-4182665 | Msa0144560:CDS | 45.0% |
| ACCTGTATACAGGCGAAAAG+AGG | - | chr1_4:4182650-4182669 | None:intergenic | 45.0% | |
| AAACCTTCCATGGCCAATCT+CGG | - | chr1_4:4182947-4182966 | None:intergenic | 45.0% | |
| CGAACCTCGTAATCAGTGAT+TGG | - | chr1_4:4183030-4183049 | None:intergenic | 45.0% | |
| GTAAGGACGATTTCCAGACA+TGG | - | chr1_4:4183215-4183234 | None:intergenic | 45.0% | |
| TCCCTTCAAGAACCGGATAT+AGG | + | chr1_4:4183541-4183560 | Msa0144560:intron | 45.0% | |
| GCCTATATCCGGTTCTTGAA+GGG | - | chr1_4:4183545-4183564 | None:intergenic | 45.0% | |
| CAGATCCCTCAAAATTCAGC+TGG | + | chr1_4:4183789-4183808 | Msa0144560:intron | 45.0% | |
| ! | TGAGGCCAGCTGAATTTTGA+GGG | - | chr1_4:4183797-4183816 | None:intergenic | 45.0% |
| ! | ATGAGGCCAGCTGAATTTTG+AGG | - | chr1_4:4183798-4183817 | None:intergenic | 45.0% |
| TTGTAGCTGTCAGAGAATGG+AGG | + | chr1_4:4183890-4183909 | Msa0144560:CDS | 45.0% | |
| GTGTCTTGAGTGTCTCGATT+CGG | + | chr1_4:4184074-4184093 | Msa0144560:CDS | 45.0% | |
| !! | GTGTCTCGATTCGGCTATTA+TGG | + | chr1_4:4184083-4184102 | Msa0144560:CDS | 45.0% |
| !! | ACAAGCACTGAATGAAGCCA+TGG | + | chr1_4:4184206-4184225 | Msa0144560:CDS | 45.0% |
| ! | TACATTCTTTTCGCCCTCCA+TGG | - | chr1_4:4184226-4184245 | None:intergenic | 45.0% |
| CACCATTTACCTGAAACCAG+AGG | + | chr1_4:4184377-4184396 | Msa0144560:CDS | 45.0% | |
| ! | GTCCTCTGGTTTCAGGTAAA+TGG | - | chr1_4:4184382-4184401 | None:intergenic | 45.0% |
| ! | AAGCAAAGTCCTCTGGTTTC+AGG | - | chr1_4:4184389-4184408 | None:intergenic | 45.0% |
| TTCTGACAAGCAAAGTCCTC+TGG | - | chr1_4:4184396-4184415 | None:intergenic | 45.0% | |
| CATCGACGTATCAGCCTAAA+AGG | - | chr1_4:4184589-4184608 | None:intergenic | 45.0% | |
| TATCGGAAGGATACCTAGGA+AGG | - | chr1_4:4184642-4184661 | None:intergenic | 45.0% | |
| ! | ATGGTATCGGAAGGATACCT+AGG | - | chr1_4:4184646-4184665 | None:intergenic | 45.0% |
| GGATCATTCTCCTGAATCAG+AGG | - | chr1_4:4184691-4184710 | None:intergenic | 45.0% | |
| TGGTCGGAAAGTAAGTGAAG+TGG | + | chr1_4:4184726-4184745 | Msa0144560:intron | 45.0% | |
| ACCACATATGAGCCAAGACT+TGG | - | chr1_4:4185110-4185129 | None:intergenic | 45.0% | |
| CTAAATCCATCTCCATAGGC+TGG | - | chr1_4:4185306-4185325 | None:intergenic | 45.0% | |
| TGGATTTAGAGAGGGTAACC+AGG | + | chr1_4:4185317-4185336 | Msa0144560:CDS | 45.0% | |
| TGCTCAAGTATGGGCTTAGA+CGG | + | chr1_4:4185343-4185362 | Msa0144560:CDS | 45.0% | |
| CTTGACCATATCCGAATGAC+CGG | + | chr1_4:4185369-4185388 | Msa0144560:CDS | 45.0% | |
| AACTTCCGGTCATTCGGATA+TGG | - | chr1_4:4185377-4185396 | None:intergenic | 45.0% | |
| !! | ATGTTAATATATTATATAAA+GGG | - | chr1_4:4183751-4183770 | None:intergenic | 5.0% |
| GGTTACAGAGGAGGTTACAG+AGG | + | chr1_4:4182088-4182107 | Msa0144560:CDS | 50.0% | |
| ACTTCACCGGCCCAAAAAAG+AGG | - | chr1_4:4182342-4182361 | None:intergenic | 50.0% | |
| !! | GTTGTGTCCACTTGATGACG+AGG | + | chr1_4:4182431-4182450 | Msa0144560:CDS | 50.0% |
| GACGAGGAAGATGAGCATGT+TGG | + | chr1_4:4182447-4182466 | Msa0144560:CDS | 50.0% | |
| GAATCAGTTCGAGATGGAGG+AGG | - | chr1_4:4182606-4182625 | None:intergenic | 50.0% | |
| TGTGCTTGCAGAATCTGTGC+TGG | + | chr1_4:4182913-4182932 | Msa0144560:intron | 50.0% | |
| TGAGTTGCATGGGAGCTGTA+TGG | + | chr1_4:4182968-4182987 | Msa0144560:CDS | 50.0% | |
| ATAAGGAGCTGCATCACCCA+AGG | + | chr1_4:4183248-4183267 | Msa0144560:CDS | 50.0% | |
| CGCCTATATCCGGTTCTTGA+AGG | - | chr1_4:4183546-4183565 | None:intergenic | 50.0% | |
| CTCTGACAGCTACAACAACG+AGG | - | chr1_4:4183885-4183904 | None:intergenic | 50.0% | |
| ! | AGCACTGAATGAAGCCATGG+AGG | + | chr1_4:4184209-4184228 | Msa0144560:CDS | 50.0% |
| GCACTGAATGAAGCCATGGA+GGG | + | chr1_4:4184210-4184229 | Msa0144560:CDS | 50.0% | |
| AGCAAACTGTCCCCACTGTA+AGG | + | chr1_4:4184417-4184436 | Msa0144560:intron | 50.0% | |
| AGGAGACCAAGTATAGGAGC+AGG | + | chr1_4:4184535-4184554 | Msa0144560:CDS | 50.0% | |
| CTGAGGCCTGAAGTTGAAGA+AGG | + | chr1_4:4185078-4185097 | Msa0144560:CDS | 50.0% | |
| GCCAAGTCTTGGCTCATATG+TGG | + | chr1_4:4185106-4185125 | Msa0144560:CDS | 50.0% | |
| TCAGAGATCTATTCCGGCTC+TGG | + | chr1_4:4185135-4185154 | Msa0144560:CDS | 50.0% | |
| TGCTTCTTCACTTCCAGAGC+CGG | - | chr1_4:4185151-4185170 | None:intergenic | 50.0% | |
| GTGAGCTGTCTGTCTCAATC+TGG | - | chr1_4:4185284-4185303 | None:intergenic | 50.0% | |
| AACCAGGCAGTGCTCAAGTA+TGG | + | chr1_4:4185333-4185352 | Msa0144560:CDS | 50.0% | |
| ACCAGGCAGTGCTCAAGTAT+GGG | + | chr1_4:4185334-4185353 | Msa0144560:CDS | 50.0% | |
| ! | TGCAATGCCGAGATTGGCCA+TGG | + | chr1_4:4182937-4182956 | Msa0144560:CDS | 55.0% |
| ! | ATGCCGAGATTGGCCATGGA+AGG | + | chr1_4:4182941-4182960 | Msa0144560:CDS | 55.0% |
| CGGTAGCCTGCTCCTATACT+TGG | - | chr1_4:4184544-4184563 | None:intergenic | 55.0% | |
| CGACAGGCTATGGCAATCTG+AGG | + | chr1_4:4185061-4185080 | Msa0144560:intron | 55.0% | |
| ACAGACAGCTCACCAGCCTA+TGG | + | chr1_4:4185291-4185310 | Msa0144560:CDS | 55.0% | |
| AGCTCACCAGCCTATGGAGA+TGG | + | chr1_4:4185297-4185316 | Msa0144560:CDS | 55.0% | |
| GCTGGCTGCAATGCCGAGAT+TGG | + | chr1_4:4182931-4182950 | Msa0144560:CDS | 60.0% | |
| ! | GCCCATACTTGAGCACTGCC+TGG | - | chr1_4:4185338-4185357 | None:intergenic | 60.0% |
| TGTCCATCGCACGAGCGCGA+TGG | + | chr1_4:4183855-4183874 | Msa0144560:CDS | 65.0% | |
| GTACCATCGCGCTCGTGCGA+TGG | - | chr1_4:4183861-4183880 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 4181028 | 4185775 | 4181028 | ID=Msa0144560;Name=Msa0144560 |
| chr1_4 | mRNA | 4181028 | 4185775 | 4181028 | ID=Msa0144560-mRNA-1;Parent=Msa0144560;Name=Msa0144560-mRNA-1;_AED=0.14;_eAED=0.14;_QI=280|0.90|0.83|1|0.72|0.66|12|371|516 |
| chr1_4 | exon | 4181028 | 4181245 | 4181028 | ID=Msa0144560-mRNA-1:exon:1685;Parent=Msa0144560-mRNA-1 |
| chr1_4 | exon | 4181753 | 4181925 | 4181753 | ID=Msa0144560-mRNA-1:exon:1686;Parent=Msa0144560-mRNA-1 |
| chr1_4 | exon | 4182026 | 4182137 | 4182026 | ID=Msa0144560-mRNA-1:exon:1687;Parent=Msa0144560-mRNA-1 |
| chr1_4 | exon | 4182403 | 4182667 | 4182403 | ID=Msa0144560-mRNA-1:exon:1688;Parent=Msa0144560-mRNA-1 |
| chr1_4 | exon | 4182924 | 4183044 | 4182924 | ID=Msa0144560-mRNA-1:exon:1689;Parent=Msa0144560-mRNA-1 |
| chr1_4 | exon | 4183208 | 4183291 | 4183208 | ID=Msa0144560-mRNA-1:exon:1690;Parent=Msa0144560-mRNA-1 |
| chr1_4 | exon | 4183792 | 4183911 | 4183792 | ID=Msa0144560-mRNA-1:exon:1691;Parent=Msa0144560-mRNA-1 |
| chr1_4 | exon | 4184030 | 4184242 | 4184030 | ID=Msa0144560-mRNA-1:exon:1692;Parent=Msa0144560-mRNA-1 |
| chr1_4 | exon | 4184368 | 4184433 | 4184368 | ID=Msa0144560-mRNA-1:exon:1693;Parent=Msa0144560-mRNA-1 |
| chr1_4 | exon | 4184529 | 4184601 | 4184529 | ID=Msa0144560-mRNA-1:exon:1694;Parent=Msa0144560-mRNA-1 |
| chr1_4 | exon | 4184930 | 4184977 | 4184930 | ID=Msa0144560-mRNA-1:exon:1695;Parent=Msa0144560-mRNA-1 |
| chr1_4 | exon | 4185067 | 4185775 | 4185067 | ID=Msa0144560-mRNA-1:exon:1696;Parent=Msa0144560-mRNA-1 |
| chr1_4 | five_prime_UTR | 4181028 | 4181245 | 4181028 | ID=Msa0144560-mRNA-1:five_prime_utr;Parent=Msa0144560-mRNA-1 |
| chr1_4 | five_prime_UTR | 4181753 | 4181814 | 4181753 | ID=Msa0144560-mRNA-1:five_prime_utr;Parent=Msa0144560-mRNA-1 |
| chr1_4 | CDS | 4181815 | 4181925 | 4181815 | ID=Msa0144560-mRNA-1:cds;Parent=Msa0144560-mRNA-1 |
| chr1_4 | CDS | 4182026 | 4182137 | 4182026 | ID=Msa0144560-mRNA-1:cds;Parent=Msa0144560-mRNA-1 |
| chr1_4 | CDS | 4182403 | 4182667 | 4182403 | ID=Msa0144560-mRNA-1:cds;Parent=Msa0144560-mRNA-1 |
| chr1_4 | CDS | 4182924 | 4183044 | 4182924 | ID=Msa0144560-mRNA-1:cds;Parent=Msa0144560-mRNA-1 |
| chr1_4 | CDS | 4183208 | 4183291 | 4183208 | ID=Msa0144560-mRNA-1:cds;Parent=Msa0144560-mRNA-1 |
| chr1_4 | CDS | 4183792 | 4183911 | 4183792 | ID=Msa0144560-mRNA-1:cds;Parent=Msa0144560-mRNA-1 |
| chr1_4 | CDS | 4184030 | 4184242 | 4184030 | ID=Msa0144560-mRNA-1:cds;Parent=Msa0144560-mRNA-1 |
| chr1_4 | CDS | 4184368 | 4184433 | 4184368 | ID=Msa0144560-mRNA-1:cds;Parent=Msa0144560-mRNA-1 |
| chr1_4 | CDS | 4184529 | 4184601 | 4184529 | ID=Msa0144560-mRNA-1:cds;Parent=Msa0144560-mRNA-1 |
| chr1_4 | CDS | 4184930 | 4184977 | 4184930 | ID=Msa0144560-mRNA-1:cds;Parent=Msa0144560-mRNA-1 |
| chr1_4 | CDS | 4185067 | 4185404 | 4185067 | ID=Msa0144560-mRNA-1:cds;Parent=Msa0144560-mRNA-1 |
| chr1_4 | three_prime_UTR | 4185405 | 4185775 | 4185405 | ID=Msa0144560-mRNA-1:three_prime_utr;Parent=Msa0144560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
