AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0093440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0093440 MtrunA17_Chr2g0331721 91.126 462 4 2 1 426 1 461 0.0 842
Msa0093440 MtrunA17_Chr6g0458931 69.365 457 96 4 12 426 1 455 0.0 653
Msa0093440 MtrunA17_Chr7g0230011 74.026 462 65 3 1 426 1 443 0.0 652
Msa0093440 MtrunA17_Chr6g0459021 69.907 432 93 2 31 426 17 447 0.0 592
Msa0093440 MtrunA17_Chr6g0459001 64.496 476 91 3 28 426 2 476 0.0 580
Msa0093440 MtrunA17_Chr8g0376991 62.125 433 127 2 30 426 5 436 0.0 574
Msa0093440 MtrunA17_Chr6g0458921 68.765 429 94 4 35 426 3 428 0.0 564
Msa0093440 MtrunA17_Chr6g0459031 67.056 428 103 3 36 426 2 428 0.0 557
Msa0093440 MtrunA17_Chr3g0122921 60.959 438 116 3 25 426 10 428 0.0 550
Msa0093440 MtrunA17_Chr4g0057851 63.196 413 115 2 48 424 10 421 0.0 548
Msa0093440 MtrunA17_Chr2g0328081 67.991 428 99 3 36 426 2 428 0.0 535
Msa0093440 MtrunA17_Chr6g0459011 70.812 394 78 2 64 421 1 393 0.0 528
Msa0093440 MtrunA17_Chr5g0422741 56.433 443 152 3 20 426 2 439 3.64e-172 489
Msa0093440 MtrunA17_Chr1g0198531 56.120 433 149 3 30 426 10 437 6.15e-169 481
Msa0093440 MtrunA17_Chr1g0198541 54.734 433 155 3 30 426 10 437 1.89e-164 469
Msa0093440 MtrunA17_Chr3g0077651 49.425 435 181 2 31 426 35 469 4.00e-146 424
Msa0093440 MtrunA17_Chr3g0143701 35.065 462 242 9 4 412 39 495 9.99e-85 268
Msa0093440 MtrunA17_Chr2g0281341 36.038 419 221 5 40 412 87 504 1.40e-84 268
Msa0093440 MtrunA17_Chr5g0406331 36.496 411 213 5 40 403 78 487 8.24e-83 263
Msa0093440 MtrunA17_Chr5g0406351 34.312 443 242 6 32 426 91 532 3.22e-81 259
Msa0093440 MtrunA17_Chr4g0038711 32.836 469 249 7 5 415 29 489 2.61e-80 256
Msa0093440 MtrunA17_Chr3g0140761 27.984 486 264 11 12 422 1 475 9.09e-52 181
Msa0093440 MtrunA17_Chr1g0198081 27.426 474 283 11 1 426 19 479 1.35e-48 172
Msa0093440 MtrunA17_Chr1g0146491 28.416 461 250 11 35 422 12 465 6.37e-48 170
Msa0093440 MtrunA17_Chr8g0387941 26.327 452 277 9 24 425 2 447 6.54e-46 164
Msa0093440 MtrunA17_Chr3g0125101 28.145 469 255 13 26 422 15 473 1.72e-44 161
Msa0093440 MtrunA17_Chr4g0027241 25.647 464 286 10 11 425 6 459 3.80e-44 160
Msa0093440 MtrunA17_Chr3g0125091 27.292 469 259 12 26 422 15 473 5.88e-44 159
Msa0093440 MtrunA17_Chr3g0103271 27.463 477 255 13 23 421 2 465 6.29e-44 159
Msa0093440 MtrunA17_Chr3g0125081 27.292 469 258 13 26 422 15 472 1.51e-43 159
Msa0093440 MtrunA17_Chr1g0206871 26.477 457 245 10 49 422 16 464 1.98e-42 155
Msa0093440 MtrunA17_Chr4g0037201 25.562 489 273 10 10 422 32 505 4.00e-42 155
Msa0093440 MtrunA17_Chr1g0146391 25.966 466 258 12 35 426 2 454 1.42e-39 147
Msa0093440 MtrunA17_Chr3g0130641 28.446 457 239 11 40 422 28 470 2.36e-39 147
Msa0093440 MtrunA17_Chr1g0159761 27.679 448 236 13 25 397 5 439 6.29e-38 143
Msa0093440 MtrunA17_Chr5g0447221 26.637 443 239 11 49 416 30 461 6.67e-38 143
Msa0093440 MtrunA17_Chr8g0384661 26.292 445 249 10 49 422 51 487 1.71e-37 142
Msa0093440 MtrunA17_Chr3g0130651 27.014 422 227 10 40 392 22 431 1.75e-37 142
Msa0093440 MtrunA17_Chr1g0184721 25.806 434 248 11 48 425 22 437 4.22e-37 140
Msa0093440 MtrunA17_Chr3g0103231 25.342 438 255 9 47 416 22 455 7.22e-36 137
Msa0093440 MtrunA17_Chr1g0146411 27.273 418 228 13 40 391 28 435 9.93e-36 137
Msa0093440 MtrunA17_Chr5g0447231 25.959 443 243 13 49 416 26 458 5.52e-34 132
Msa0093440 MtrunA17_Chr3g0140541 25.113 442 245 11 47 413 24 454 9.08e-34 131
Msa0093440 MtrunA17_Chr3g0103211 25.217 460 269 10 25 416 3 455 1.03e-32 128
Msa0093440 MtrunA17_Chr2g0293331 24.201 438 242 10 49 407 13 439 1.92e-32 127
Msa0093440 MtrunA17_Chr3g0140531 24.313 473 276 13 26 425 4 467 2.35e-32 127
Msa0093440 MtrunA17_Chr1g0146331 23.400 453 253 11 35 407 10 448 3.77e-32 127
Msa0093440 MtrunA17_Chr4g0058161 24.935 385 249 9 76 425 68 447 1.01e-30 122
Msa0093440 MtrunA17_Chr3g0103221 23.131 428 259 9 56 416 38 462 2.00e-28 116
Msa0093440 MtrunA17_Chr1g0206851 25.429 350 181 9 143 422 35 374 1.45e-27 112
Msa0093440 MtrunA17_Chr1g0206831 26.452 310 153 7 177 421 37 336 7.24e-27 110
Msa0093440 MtrunA17_Chr5g0436281 25.581 387 238 9 76 422 1 377 3.86e-24 103
Msa0093440 MtrunA17_Chr1g0206821 28.899 218 126 6 228 422 313 524 1.08e-23 103
Msa0093440 MtrunA17_Chr1g0206821 28.346 254 117 7 35 231 11 256 5.99e-16 79.7
Msa0093440 MtrunA17_Chr3g0103251 29.075 227 140 4 209 416 144 368 7.30e-23 99.4
Msa0093440 MtrunA17_Chr3g0130661 28.736 174 108 2 265 422 1 174 1.09e-16 77.8
Msa0093440 MtrunA17_Chr3g0112971 24.036 441 279 14 31 425 3 433 9.48e-16 79.0
Msa0093440 MtrunA17_Chr5g0402151 27.372 274 137 7 59 293 11 261 1.12e-13 71.2
Msa0093440 MtrunA17_Chr7g0217401 24.422 389 234 15 32 381 25 392 1.67e-13 72.0
Msa0093440 MtrunA17_Chr4g0027261 26.178 191 125 4 244 425 1 184 3.85e-13 67.8
Msa0093440 MtrunA17_Chr7g0239011 20.339 413 276 12 19 395 32 427 6.73e-13 70.1
Msa0093440 MtrunA17_Chr7g0217381 24.416 385 231 14 38 380 24 390 1.52e-12 68.9
Msa0093440 MtrunA17_Chr3g0090101 23.901 364 225 12 58 385 2 349 8.58e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0093440 AT5G40780.1 71.685 445 83 3 24 426 3 446 0.0 659
Msa0093440 AT1G48640.1 67.347 441 104 3 25 426 14 453 0.0 610
Msa0093440 AT1G24400.1 70.862 429 88 2 34 426 14 441 0.0 600
Msa0093440 AT5G40780.3 72.431 399 73 2 64 426 1 398 0.0 597
Msa0093440 AT5G40780.2 72.431 399 73 2 64 426 1 398 0.0 597
Msa0093440 AT1G67640.1 69.091 440 98 3 23 426 4 441 0.0 582
Msa0093440 AT3G01760.1 60.417 432 130 3 30 420 10 441 0.0 539
Msa0093440 AT1G61270.1 61.072 429 130 2 21 412 6 434 0.0 538
Msa0093440 AT1G25530.1 55.991 434 149 3 28 425 12 439 6.79e-167 476
Msa0093440 AT1G71680.1 52.339 449 171 3 20 426 1 448 1.03e-153 443
Msa0093440 AT1G71680.2 52.473 364 130 3 20 341 1 363 8.02e-128 374
Msa0093440 AT1G47670.1 35.417 432 232 5 40 425 85 515 1.36e-82 263
Msa0093440 AT4G35180.1 29.596 446 263 7 5 406 19 457 1.33e-62 209
Msa0093440 AT1G10010.1 30.538 465 246 9 29 422 10 468 4.38e-54 187
Msa0093440 AT1G10010.2 30.538 465 246 9 29 422 11 469 5.02e-54 187
Msa0093440 AT4G35180.2 31.148 305 170 2 5 274 19 318 5.40e-50 172
Msa0093440 AT1G08230.2 26.932 453 273 10 24 425 3 448 2.65e-46 166
Msa0093440 AT1G58360.1 28.131 487 259 10 8 422 10 477 3.10e-46 166
Msa0093440 AT5G41800.1 26.056 426 260 7 50 426 28 447 1.88e-42 155
Msa0093440 AT1G77380.1 28.670 436 231 12 32 397 15 440 4.31e-42 155
Msa0093440 AT5G49630.1 28.510 463 250 12 16 402 2 459 7.32e-42 154
Msa0093440 AT5G09220.1 26.562 448 248 11 49 422 46 486 1.29e-40 151
Msa0093440 AT1G44100.1 25.364 481 266 13 23 422 5 473 5.68e-37 141
Msa0093440 AT5G63850.1 25.676 444 257 8 49 422 19 459 7.30e-37 140
Msa0093440 AT5G23810.1 26.651 424 220 11 47 390 24 436 2.44e-33 130
Msa0093440 AT1G08230.3 26.761 355 204 9 120 425 1 348 2.17e-29 117
Msa0093440 AT1G08230.4 27.190 331 185 9 144 425 6 329 7.56e-28 113
Msa0093440 AT1G08230.6 27.190 331 185 9 144 425 6 329 7.56e-28 113
Msa0093440 AT1G08230.5 27.190 331 185 9 144 425 6 329 7.56e-28 113
Msa0093440 AT3G55740.1 24.622 463 278 13 1 422 1 433 1.68e-24 105
Msa0093440 AT2G39890.2 23.474 426 275 11 39 422 20 436 1.03e-23 103
Msa0093440 AT2G39890.1 23.474 426 275 11 39 422 20 436 1.03e-23 103
Msa0093440 AT2G39890.3 23.316 386 248 9 76 422 1 377 2.87e-22 98.2
Msa0093440 AT2G36590.1 25.245 408 246 15 37 398 12 406 1.69e-21 96.7
Msa0093440 AT3G55740.2 24.289 387 243 9 76 422 1 377 2.98e-21 95.1
Msa0093440 AT3G55740.3 24.289 387 243 9 76 422 1 377 2.98e-21 95.1
Msa0093440 AT5G23810.2 25.767 326 170 9 47 311 24 338 5.13e-20 91.3
Msa0093440 AT5G15240.1 25.000 392 241 13 25 380 9 383 4.66e-18 86.3
Msa0093440 AT2G39130.2 24.017 458 285 17 6 416 104 545 3.67e-15 77.8
Msa0093440 AT2G39130.1 24.017 458 285 17 6 416 104 545 3.67e-15 77.8

Find 136 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTCCCTGTTGCTCTTAT+TGG 0.168322 1_2:+76177349 Msa0093440:CDS
AATGCTTTGGTTGGAATAAA+TGG 0.172145 1_2:+76178488 Msa0093440:three_prime_UTR
TTCAATTTCTTCAGTGCTTT+AGG 0.228996 1_2:+76177190 Msa0093440:intron
GGAATAACCTTCCCATTCTT+TGG 0.269371 1_2:+76177953 Msa0093440:CDS
ATTTCCCTGTTGCTCTTATT+GGG 0.271137 1_2:+76177350 Msa0093440:CDS
GCTTGTCTTGGTTCACCAAC+TGG 0.284054 1_2:+76178174 Msa0093440:CDS
CCATTCTTTGGTGCTCTCCT+TGG 0.284353 1_2:+76177965 Msa0093440:CDS
TTTGTTGTCATTCATGTTAT+AGG 0.284943 1_2:+76177457 Msa0093440:CDS
TTTCTATACTTGACGATTCA+TGG 0.294299 1_2:+76178385 Msa0093440:exon
CTGTTGCTCTTATTGGGTAT+TGG 0.300006 1_2:+76177356 Msa0093440:CDS
TGTTGATAAATGATTTGATA+TGG 0.305178 1_2:-76173737 None:intergenic
ACTGCAGAAAATTCATGATT+TGG 0.311368 1_2:+76175900 Msa0093440:CDS
CCCAACTTCAACTCCATTGC+TGG 0.312413 1_2:+76176006 Msa0093440:CDS
CTTATTGGGTATTGGATGTT+TGG 0.317962 1_2:+76177364 Msa0093440:CDS
AAGAATAAATGGAGTGATAT+AGG 0.323743 1_2:+76178602 Msa0093440:three_prime_UTR
TGCATTCCTTGAAGAAGTTA+TGG 0.330789 1_2:-76174111 None:intergenic
CTTCTTCAAGGAATGCAAAA+TGG 0.331015 1_2:+76174117 Msa0093440:CDS
TAATCACCCTCTACACTCTA+TGG 0.375402 1_2:+76175710 Msa0093440:CDS
TATATTCAAATTGTTTGTAA+TGG 0.380887 1_2:+76178525 Msa0093440:three_prime_UTR
CATTGCGAACAACAAATCTT+AGG 0.383519 1_2:-76177667 None:intergenic
AACAAAAGAAAATTGATGAT+TGG 0.385860 1_2:+76174084 Msa0093440:CDS
CAATACCCAATAAGAGCAAC+AGG 0.389191 1_2:-76177355 None:intergenic
TTCAAATTGTTTGTAATGGA+GGG 0.402381 1_2:+76178529 Msa0093440:three_prime_UTR
GAGATGCATGAAATGGTTCC+AGG 0.408422 1_2:+76175742 Msa0093440:CDS
TTGGAGAAAAGCTTGGACTC+TGG 0.412306 1_2:+76175806 Msa0093440:CDS
ATGGAGTTAGATAAGGAGAA+AGG 0.413935 1_2:-76178716 None:intergenic
GGCTTCCCATAACTTCTTCA+AGG 0.414953 1_2:+76174105 Msa0093440:CDS
TCATGTTATAGGAAGCTATC+AGG 0.416323 1_2:+76177468 Msa0093440:CDS
TCCTCTCCACATTGGACCCT+TGG 0.420922 1_2:-76177293 None:intergenic
ATTAGCCTCAATCCACCTAT+TGG 0.422145 1_2:-76178338 None:intergenic
CTCCACATTGGACCCTTGGA+TGG 0.422755 1_2:-76177289 None:intergenic
GCATTCCTTGAAGAAGTTAT+GGG 0.423856 1_2:-76174110 None:intergenic
TCGGCCTCTGAAGAAGCAAC+TGG 0.424134 1_2:-76173862 None:intergenic
TCATGGATGCATGTGTATAA+TGG 0.429106 1_2:+76178402 Msa0093440:three_prime_UTR
CCATCTGCCATGGCAAGTCT+TGG 0.434758 1_2:+76174197 Msa0093440:CDS
GGACCCTTGGATGGTTTCTC+CGG 0.438031 1_2:-76177280 None:intergenic
CTTATGATTCTGTCACCAAT+AGG 0.442214 1_2:+76178323 Msa0093440:CDS
CTTCTCTTAATAAACCTACT+TGG 0.442717 1_2:+76177413 Msa0093440:CDS
GACATTGTTTACATGGTCAC+CGG 0.442865 1_2:+76175868 Msa0093440:CDS
CTCCATTGCTGGTATCTCCT+TGG 0.443891 1_2:+76176017 Msa0093440:CDS
TGTAGCTTCCTTGCGTTATG+TGG 0.449438 1_2:+76178123 Msa0093440:intron
GATGGTTTCTCCGGTGTGGA+CGG 0.451778 1_2:-76177271 None:intergenic
ATTCAAATTGTTTGTAATGG+AGG 0.454329 1_2:+76178528 Msa0093440:three_prime_UTR
TTCAGCATTCACAATGTTTG+TGG 0.454604 1_2:+76177931 Msa0093440:intron
ATGGTTTCTCCGGTGTGGAC+GGG 0.455777 1_2:-76177270 None:intergenic
CCAAGACAAGCTAAACCTCT+TGG 0.459332 1_2:-76178162 None:intergenic
CCAAGAGGTTTAGCTTGTCT+TGG 0.460362 1_2:+76178162 Msa0093440:CDS
ACCAGCAATGGAGTTGAAGT+TGG 0.460631 1_2:-76176007 None:intergenic
CTCCAACACCACATTGTGTC+CGG 0.463600 1_2:-76177233 None:intergenic
CCAAGGAGAGCACCAAAGAA+TGG 0.465096 1_2:-76177965 None:intergenic
TGCTTCTTCAGAGGCCGAAA+AGG 0.465946 1_2:+76173867 Msa0093440:CDS
CTGCAGCAATCATGTCTTTG+AGG 0.471568 1_2:+76176040 Msa0093440:CDS
TTTCAGATATGCATTATACT+TGG 0.474234 1_2:+76178293 Msa0093440:intron
ATGAAATGGTTCCAGGAAAA+CGG 0.476078 1_2:+76175749 Msa0093440:CDS
TGGAGTTGAAGTTGGGAAGA+TGG 0.477812 1_2:-76175999 None:intergenic
ATGTCGAATTGCAGGGGTCC+TGG 0.479412 1_2:+76175661 Msa0093440:intron
CTTGTCTTGGTTCACCAACT+GGG 0.479607 1_2:+76178175 Msa0093440:CDS
CAAGACAAGCTAAACCTCTT+GGG 0.483234 1_2:-76178161 None:intergenic
AGTATAGAAACCGTAGGACT+TGG 0.487333 1_2:-76178372 None:intergenic
GGAGTTGAAGTTGGGAAGAT+GGG 0.488377 1_2:-76175998 None:intergenic
TCAGCATTCACAATGTTTGT+GGG 0.488938 1_2:+76177932 Msa0093440:intron
TTATGGACTTACAAAATATG+TGG 0.492596 1_2:-76178017 None:intergenic
CCAAGACTTGCCATGGCAGA+TGG 0.495959 1_2:-76174197 None:intergenic
CAAGGAGAGCACCAAAGAAT+GGG 0.496713 1_2:-76177964 None:intergenic
CCTCTACACTCTATGGCAAA+TGG 0.497407 1_2:+76175717 Msa0093440:CDS
TTTGACAGATACCATGAGTT+GGG 0.500029 1_2:+76175772 Msa0093440:CDS
TGGAGTTAGATAAGGAGAAA+GGG 0.503087 1_2:-76178715 None:intergenic
TGACATGATTGAGACCGTAA+TGG 0.504825 1_2:+76177613 Msa0093440:CDS
GAGTTGGGACAAGAAGCATT+TGG 0.508176 1_2:+76175787 Msa0093440:CDS
GAAGCATTTGGAGAAAAGCT+TGG 0.510904 1_2:+76175799 Msa0093440:CDS
TGTTGGAGACTCAGTTCCCA+TGG 0.511962 1_2:-76173830 None:intergenic
CACAACGTTACTGCCATGGT+TGG 0.517108 1_2:+76174155 Msa0093440:CDS
CCAGCAATGGAGTTGAAGTT+GGG 0.520549 1_2:-76176006 None:intergenic
TTTCGTAAGAATGCTTTGGT+TGG 0.527747 1_2:+76178479 Msa0093440:three_prime_UTR
GTTGTTCGCAATGTTTATGT+TGG 0.530022 1_2:+76177677 Msa0093440:CDS
TCAAATTGTTTGTAATGGAG+GGG 0.530337 1_2:+76178530 Msa0093440:three_prime_UTR
GCTGCAACTATAAGCCAAGT+AGG 0.535757 1_2:-76177427 None:intergenic
CTTGAGTCTTCCATCTGCCA+TGG 0.541643 1_2:+76174187 Msa0093440:CDS
ATGCTTCTTGTCCCAACTCA+TGG 0.547647 1_2:-76175783 None:intergenic
ATTGTTTGTAATGGAGGGGA+GGG 0.550730 1_2:+76178534 Msa0093440:three_prime_UTR
TGGTGTGGACATTGTTTACA+TGG 0.554021 1_2:+76175861 Msa0093440:CDS
AATGGTTGAGATGCATGAAA+TGG 0.555074 1_2:+76175735 Msa0093440:CDS
AGACATGATTGCTGCAGCCA+AGG 0.555144 1_2:-76176034 None:intergenic
ATGCAAGATATGACAAAGGT+AGG 0.555244 1_2:-76178439 None:intergenic
CTGCCATGGCAAGTCTTGGA+TGG 0.557557 1_2:+76174201 Msa0093440:CDS
ACATTGTTTACATGGTCACC+GGG 0.558322 1_2:+76175869 Msa0093440:CDS
ACAAATCTTAGGAGTCGAGT+TGG 0.570308 1_2:-76177656 None:intergenic
GTTTGACAGATACCATGAGT+TGG 0.571800 1_2:+76175771 Msa0093440:CDS
AATAAAACTCCTCTCCACAT+TGG 0.575187 1_2:-76177301 None:intergenic
TGGACTTACAAAATATGTGG+TGG 0.575327 1_2:-76178014 None:intergenic
CAACAGTTGATATGTGAAGT+TGG 0.577281 1_2:+76175841 Msa0093440:CDS
ATACTCAATGCCAAGTCCTA+CGG 0.577308 1_2:+76178362 Msa0093440:CDS
AATTGTTTGTAATGGAGGGG+AGG 0.588248 1_2:+76178533 Msa0093440:three_prime_UTR
GTTACTGCCATGGTTGGAGC+TGG 0.590710 1_2:+76174161 Msa0093440:CDS
CTTGGATGGTTTCTCCGGTG+TGG 0.592081 1_2:-76177275 None:intergenic
CATTTGCCATAGAGTGTAGA+GGG 0.594361 1_2:-76175716 None:intergenic
CTTGACTTAATAACCACCAT+GGG 0.594664 1_2:+76173814 Msa0093440:exon
CAAGACACCAGCTCCAACCA+TGG 0.596093 1_2:-76174168 None:intergenic
TGCCGGACACAATGTGGTGT+TGG 0.600214 1_2:+76177231 Msa0093440:CDS
ATGATTCTGTCACCAATAGG+TGG 0.600362 1_2:+76178326 Msa0093440:CDS
TGTCACCAATAGGTGGATTG+AGG 0.602435 1_2:+76178333 Msa0093440:CDS
GATGTTGCATTTGCCTATGC+CGG 0.602926 1_2:+76177214 Msa0093440:CDS
AAAACCAGTTGCTTCTTCAG+AGG 0.604395 1_2:+76173858 Msa0093440:CDS
GTGACAGAATCATAAGGAGG+AGG 0.610650 1_2:-76178316 None:intergenic
GGACTTACAAAATATGTGGT+GGG 0.615054 1_2:-76178013 None:intergenic
CCATTTGCCATAGAGTGTAG+AGG 0.615329 1_2:-76175717 None:intergenic
AAAATTAGAATCACCACACC+AGG 0.621042 1_2:-76175679 None:intergenic
ACTTGACTTAATAACCACCA+TGG 0.625403 1_2:+76173813 Msa0093440:exon
ACTTCACATATCAACTGTTG+TGG 0.626823 1_2:-76175838 None:intergenic
TGGAGACTCAGTTCCCATGG+TGG 0.630497 1_2:-76173827 None:intergenic
ATACCATCCAAGACTTGCCA+TGG 0.631568 1_2:-76174204 None:intergenic
GAATTGCAGGGGTCCTGGTG+TGG 0.635436 1_2:+76175666 Msa0093440:intron
ATTGTTTACATGGTCACCGG+GGG 0.638235 1_2:+76175871 Msa0093440:CDS
CTATTGGTGACAGAATCATA+AGG 0.645120 1_2:-76178322 None:intergenic
TGTTTGTGTCAACACTAGGA+CGG 0.646719 1_2:+76173674 None:intergenic
TCCAAGGGTCCAATGTGGAG+AGG 0.647648 1_2:+76177292 Msa0093440:CDS
CACCACATTGTGTCCGGCAT+AGG 0.647925 1_2:-76177227 None:intergenic
ATAGCAAGCCACATAACGCA+AGG 0.649319 1_2:-76178131 None:intergenic
GGCAAGAATAAAATGAACAG+AGG 0.650976 1_2:-76175977 None:intergenic
AGCAACAATCCCGTCCACAC+CGG 0.654369 1_2:+76177261 Msa0093440:CDS
CTTCAAGGAATGCAAAATGG+TGG 0.654515 1_2:+76174120 Msa0093440:CDS
GAGAGCACCAAAGAATGGGA+AGG 0.656834 1_2:-76177960 None:intergenic
GTTGATATGTGAAGTTGGTG+TGG 0.658649 1_2:+76175846 Msa0093440:CDS
CACACCGGAGAAACCATCCA+AGG 0.663681 1_2:+76177276 Msa0093440:CDS
AGCCAAGGAGATACCAGCAA+TGG 0.663690 1_2:-76176019 None:intergenic
TAAAATGCAAGATATGACAA+AGG 0.668139 1_2:-76178443 None:intergenic
TTGCTATTTACAAACCCAAG+AGG 0.674356 1_2:+76178147 Msa0093440:CDS
CATTGTTTACATGGTCACCG+GGG 0.675950 1_2:+76175870 Msa0093440:CDS
TCGTCAAGTATAGAAACCGT+AGG 0.681478 1_2:-76178378 None:intergenic
AACCATCCAAGGGTCCAATG+TGG 0.683222 1_2:+76177287 Msa0093440:CDS
TTTCTCAGCACAAGAACCAG+AGG 0.688314 1_2:+76173894 Msa0093440:CDS
ACACCGGAGAAACCATCCAA+GGG 0.697058 1_2:+76177277 Msa0093440:CDS
TTGGTGACAGAATCATAAGG+AGG 0.701093 1_2:-76178319 None:intergenic
TGCAATTGAACATACCCAGT+TGG 0.717088 1_2:-76178189 None:intergenic
TGCCTATGCCGGACACAATG+TGG 0.720388 1_2:+76177225 Msa0093440:CDS
AATACCCAATAAGAGCAACA+GGG 0.735246 1_2:-76177354 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTATATTTTTTAAA+TGG - chr1_2:76174707-76174726 None:intergenic 0.0%
!! TCAAAAAAAAAAAAAAACAA+GGG - chr1_2:76174460-76174479 None:intergenic 10.0%
!!! AATTTAACTTCTAAAAAAAA+AGG + chr1_2:76174546-76174565 Msa0093440:intron 10.0%
!!! ATTTATATTTTTTAAATGGT+TGG - chr1_2:76174703-76174722 None:intergenic 10.0%
!! ATTTGAATATTAATGAAATA+TGG - chr1_2:76176685-76176704 None:intergenic 10.0%
!!! TATATAAAATAAAAGTACAA+CGG + chr1_2:76176891-76176910 Msa0093440:intron 10.0%
!!! ATTTTGTTTTTAAGAATAAA+TGG + chr1_2:76178591-76178610 Msa0093440:three_prime_UTR 10.0%
!!! ATATGTGTAGTTTAAATTTT+TGG - chr1_2:76173793-76173812 None:intergenic 15.0%
!! GTCAAAAAAAAAAAAAAACA+AGG - chr1_2:76174461-76174480 None:intergenic 15.0%
!! AGAAAATATTTAAGAAAAGA+AGG - chr1_2:76176108-76176127 None:intergenic 15.0%
!! ATAATATTATGTTATACCAT+TGG - chr1_2:76176369-76176388 None:intergenic 15.0%
!!! GAAAATAGATTATTTTTTTG+TGG - chr1_2:76177015-76177034 None:intergenic 15.0%
!!! TATTTTTTAACTAAACTTGA+TGG + chr1_2:76177043-76177062 Msa0093440:intron 15.0%
!!! TAAAATATCCAATTTTAGAA+AGG - chr1_2:76177709-76177728 None:intergenic 15.0%
!!! TTTTATTTTGATATCTTTAG+AGG + chr1_2:76178229-76178248 Msa0093440:intron 15.0%
!! TATATTCAAATTGTTTGTAA+TGG + chr1_2:76178525-76178544 Msa0093440:three_prime_UTR 15.0%
!!! TGTTGATAAATGATTTGATA+TGG - chr1_2:76173740-76173759 None:intergenic 20.0%
!!! TTTAAATTTTTGGAACAAAG+AGG - chr1_2:76173783-76173802 None:intergenic 20.0%
!! AATAAATTGTGAATAAATGC+AGG - chr1_2:76173960-76173979 None:intergenic 20.0%
!!! AACAAAAGAAAATTGATGAT+TGG + chr1_2:76174084-76174103 Msa0093440:CDS 20.0%
!!! AACTAGAATTTTTCAAACAA+GGG - chr1_2:76174352-76174371 None:intergenic 20.0%
!!! AAACTAGAATTTTTCAAACA+AGG - chr1_2:76174353-76174372 None:intergenic 20.0%
!! AGTTTAAACAATAACCTAAA+CGG - chr1_2:76174493-76174512 None:intergenic 20.0%
!! ACTATTCACTTATTAGAAAA+TGG + chr1_2:76174510-76174529 Msa0093440:intron 20.0%
!! AATAATAATAATACACCCTT+TGG - chr1_2:76174737-76174756 None:intergenic 20.0%
!!! AGTTTTGAAATTTGAGAATT+GGG - chr1_2:76174817-76174836 None:intergenic 20.0%
!!! TAGTTTTGAAATTTGAGAAT+TGG - chr1_2:76174818-76174837 None:intergenic 20.0%
!! TTCTCAAATTTCAAAACTAT+TGG + chr1_2:76174819-76174838 Msa0093440:intron 20.0%
!! CAATAAACACTTACTTAATT+AGG - chr1_2:76174882-76174901 None:intergenic 20.0%
!! CTAATTAAGTAAGTGTTTAT+TGG + chr1_2:76174880-76174899 Msa0093440:intron 20.0%
!! GTTCATTATGCATTATTTAT+AGG + chr1_2:76174917-76174936 Msa0093440:intron 20.0%
!!! ATCAAGTTTGATTTTAATCA+TGG - chr1_2:76174950-76174969 None:intergenic 20.0%
!!! ATTTCTAGATGAACATTTTT+TGG + chr1_2:76175477-76175496 Msa0093440:intron 20.0%
!!! ATTTTTTTGCATTAACACTT+CGG - chr1_2:76175563-76175582 None:intergenic 20.0%
!! TTTAGTAGTATTTATCAACA+TGG - chr1_2:76176172-76176191 None:intergenic 20.0%
!!! TGTTGATAAATACTACTAAA+AGG + chr1_2:76176172-76176191 Msa0093440:intron 20.0%
!! TATTCAACTTTATTGAGAAT+GGG - chr1_2:76176601-76176620 None:intergenic 20.0%
!! ATATTCAACTTTATTGAGAA+TGG - chr1_2:76176602-76176621 None:intergenic 20.0%
!! TACATAATATATGTAAGATC+AGG + chr1_2:76176973-76176992 Msa0093440:intron 20.0%
!! ACATAATATATGTAAGATCA+GGG + chr1_2:76176974-76176993 Msa0093440:intron 20.0%
!! TAAAACATAGCTTATCTTAT+TGG + chr1_2:76178260-76178279 Msa0093440:intron 20.0%
!! AAAACATAGCTTATCTTATT+GGG + chr1_2:76178261-76178280 Msa0093440:intron 20.0%
! TATTAGAAAATGGATGTTCA+TGG + chr1_2:76174520-76174539 Msa0093440:intron 25.0%
! ATTAGAAAATGGATGTTCAT+GGG + chr1_2:76174521-76174540 Msa0093440:intron 25.0%
!!! TTTTAAATGGTTGGTATAGA+AGG - chr1_2:76174694-76174713 None:intergenic 25.0%
! TAAATAAAAAAAGTGGCCAA+AGG + chr1_2:76174718-76174737 Msa0093440:intron 25.0%
! AAATAAAAAAAGTGGCCAAA+GGG + chr1_2:76174719-76174738 Msa0093440:intron 25.0%
! TAAAGAAGAATAGAAACTTG+CGG - chr1_2:76174770-76174789 None:intergenic 25.0%
!! ATCAAACCATTTTCATAAGT+TGG + chr1_2:76174968-76174987 Msa0093440:intron 25.0%
!!! TATCGCGATACAATTTTTTT+AGG + chr1_2:76175100-76175119 Msa0093440:intron 25.0%
!! TGGTGATTCTAATTTTATCA+TGG + chr1_2:76175686-76175705 Msa0093440:CDS 25.0%
! ACTAAAAGGTAAATAGAGAT+TGG + chr1_2:76176186-76176205 Msa0093440:intron 25.0%
! TTATATAAGCTCATCAATAG+AGG + chr1_2:76176526-76176545 Msa0093440:intron 25.0%
! TTTAGGTGTCTAAATTGATT+CGG + chr1_2:76176774-76176793 Msa0093440:intron 25.0%
!!! CAATCATATTTTAGCTAAGT+TGG + chr1_2:76176941-76176960 Msa0093440:intron 25.0%
!!! ATATTTTAGCTAAGTTGGTA+GGG + chr1_2:76176946-76176965 Msa0093440:intron 25.0%
!! TTTGTTGTCATTCATGTTAT+AGG + chr1_2:76177457-76177476 Msa0093440:CDS 25.0%
!! AGCTAAACAAATAGCAATTT+TGG - chr1_2:76177888-76177907 None:intergenic 25.0%
! TTATGGACTTACAAAATATG+TGG - chr1_2:76178020-76178039 None:intergenic 25.0%
! TTTCAGATATGCATTATACT+TGG + chr1_2:76178293-76178312 Msa0093440:intron 25.0%
! TAAAATGCAAGATATGACAA+AGG - chr1_2:76178446-76178465 None:intergenic 25.0%
! ATTCAAATTGTTTGTAATGG+AGG + chr1_2:76178528-76178547 Msa0093440:three_prime_UTR 25.0%
!! TTCAAATTGTTTGTAATGGA+GGG + chr1_2:76178529-76178548 Msa0093440:three_prime_UTR 25.0%
! AAGAATAAATGGAGTGATAT+AGG + chr1_2:76178602-76178621 Msa0093440:three_prime_UTR 25.0%
TATGTTGTTAAGTTTACCTC+TGG - chr1_2:76173913-76173932 None:intergenic 30.0%
!! GAACTTCTAGTTCTAGAATA+CGG - chr1_2:76174270-76174289 None:intergenic 30.0%
!! ATTCTAGAACTAGAAGTTCA+TGG + chr1_2:76174271-76174290 Msa0093440:intron 30.0%
CTCATATTCTCATACTTGAT+AGG - chr1_2:76174307-76174326 None:intergenic 30.0%
!! ATTTTTCAAACAAGGGTTGA+CGG - chr1_2:76174345-76174364 None:intergenic 30.0%
AATATGAGTGACCATATGAT+TGG + chr1_2:76174374-76174393 Msa0093440:intron 30.0%
TCAAACTTGTACCAATCATA+TGG - chr1_2:76174388-76174407 None:intergenic 30.0%
GGGATTTGACATGTAATTTA+CGG - chr1_2:76174797-76174816 None:intergenic 30.0%
TAGCTACCAACTTATGAAAA+TGG - chr1_2:76174977-76174996 None:intergenic 30.0%
TATTACCTCTCGAACAAATT+GGG + chr1_2:76175398-76175417 Msa0093440:intron 30.0%
! ATTAACACTTCGGTTCTAAT+GGG - chr1_2:76175553-76175572 None:intergenic 30.0%
! TTTTACAATGTCGAATTGCA+GGG + chr1_2:76175654-76175673 Msa0093440:intron 30.0%
ACTGCAGAAAATTCATGATT+TGG + chr1_2:76175900-76175919 Msa0093440:CDS 30.0%
AAACGACCAAATTGAAGAAT+TGG - chr1_2:76176232-76176251 None:intergenic 30.0%
TCTTCAATTTGGTCGTTTAA+TGG + chr1_2:76176234-76176253 Msa0093440:intron 30.0%
CATCATCTTCAAAATTGTTC+AGG - chr1_2:76176311-76176330 None:intergenic 30.0%
!! CAATTTTGAAGATGATGTGT+TGG + chr1_2:76176314-76176333 Msa0093440:intron 30.0%
!! AAGTCTTTCTAAAGTCTCTA+TGG - chr1_2:76176445-76176464 None:intergenic 30.0%
! ATAGAGACTTTAGAAAGACT+TGG + chr1_2:76176444-76176463 Msa0093440:intron 30.0%
! GATTGGATTGTTCTTTTAGT+CGG - chr1_2:76176570-76176589 None:intergenic 30.0%
TCAAATTGGTCACAATATGT+GGG - chr1_2:76176751-76176770 None:intergenic 30.0%
! ATTTCTGGACTAAAGTCAAA+TGG - chr1_2:76176868-76176887 None:intergenic 30.0%
!!! CATATTTTAGCTAAGTTGGT+AGG + chr1_2:76176945-76176964 Msa0093440:intron 30.0%
TAGTTACTCAACAATTGCAT+GGG + chr1_2:76177093-76177112 Msa0093440:intron 30.0%
AAGAAATTGAAAACAGTTCC+TGG - chr1_2:76177181-76177200 None:intergenic 30.0%
TTCAATTTCTTCAGTGCTTT+AGG + chr1_2:76177190-76177209 Msa0093440:intron 30.0%
CTTCTCTTAATAAACCTACT+TGG + chr1_2:76177413-76177432 Msa0093440:CDS 30.0%
TGTGAAGAATCATATGCAAA+TGG - chr1_2:76177517-76177536 None:intergenic 30.0%
!!! ACGCAATTTTTTGACCATTA+CGG - chr1_2:76177630-76177649 None:intergenic 30.0%
! ATTTTATCGTTATCCGATGA+TGG + chr1_2:76177817-76177836 Msa0093440:intron 30.0%
TTTCTATACTTGACGATTCA+TGG + chr1_2:76178385-76178404 Msa0093440:exon 30.0%
!!! CTTTTTTCGTAAGAATGCTT+TGG + chr1_2:76178475-76178494 Msa0093440:three_prime_UTR 30.0%
AATGCTTTGGTTGGAATAAA+TGG + chr1_2:76178488-76178507 Msa0093440:three_prime_UTR 30.0%
! TCAAATTGTTTGTAATGGAG+GGG + chr1_2:76178530-76178549 Msa0093440:three_prime_UTR 30.0%
!!! TTTTAGCTCTCTCAGAAAAT+GGG + chr1_2:76178565-76178584 Msa0093440:three_prime_UTR 30.0%
ACTTGACTTAATAACCACCA+TGG + chr1_2:76173813-76173832 Msa0093440:exon 35.0%
CTTGACTTAATAACCACCAT+GGG + chr1_2:76173814-76173833 Msa0093440:exon 35.0%
!!! GCAACTGGTTTTTCATTTGT+TGG - chr1_2:76173850-76173869 None:intergenic 35.0%
GCATTCCTTGAAGAAGTTAT+GGG - chr1_2:76174113-76174132 None:intergenic 35.0%
TGCATTCCTTGAAGAAGTTA+TGG - chr1_2:76174114-76174133 None:intergenic 35.0%
CTTCTTCAAGGAATGCAAAA+TGG + chr1_2:76174117-76174136 Msa0093440:CDS 35.0%
TCATACTTGATAGGACGAAA+AGG - chr1_2:76174298-76174317 None:intergenic 35.0%
AACAATAACCTAAACGGTGT+TGG - chr1_2:76174487-76174506 None:intergenic 35.0%
TGAAAATCATATAACCTCCC+CGG + chr1_2:76175336-76175355 Msa0093440:intron 35.0%
CTATTACCTCTCGAACAAAT+TGG + chr1_2:76175397-76175416 Msa0093440:intron 35.0%
TCATCAATGACGAATTGTTC+AGG + chr1_2:76175440-76175459 Msa0093440:intron 35.0%
! CATTAACACTTCGGTTCTAA+TGG - chr1_2:76175554-76175573 None:intergenic 35.0%
ACCACTAATTTGACATCTGA+AGG + chr1_2:76175595-76175614 Msa0093440:intron 35.0%
TCCTTCAGATGTCAAATTAG+TGG - chr1_2:76175599-76175618 None:intergenic 35.0%
! GTTTTACAATGTCGAATTGC+AGG + chr1_2:76175653-76175672 Msa0093440:intron 35.0%
TTTACAATGTCGAATTGCAG+GGG + chr1_2:76175655-76175674 Msa0093440:intron 35.0%
AAAATTAGAATCACCACACC+AGG - chr1_2:76175682-76175701 None:intergenic 35.0%
AATGGTTGAGATGCATGAAA+TGG + chr1_2:76175735-76175754 Msa0093440:CDS 35.0%
ATGAAATGGTTCCAGGAAAA+CGG + chr1_2:76175749-76175768 Msa0093440:CDS 35.0%
TTTGACAGATACCATGAGTT+GGG + chr1_2:76175772-76175791 Msa0093440:CDS 35.0%
ACTTCACATATCAACTGTTG+TGG - chr1_2:76175841-76175860 None:intergenic 35.0%
! CAACAGTTGATATGTGAAGT+TGG + chr1_2:76175841-76175860 Msa0093440:CDS 35.0%
GGCAAGAATAAAATGAACAG+AGG - chr1_2:76175980-76175999 None:intergenic 35.0%
!! GGTTGATGATTGATACTGAA+TGG - chr1_2:76176087-76176106 None:intergenic 35.0%
TAGCGACCAATTCTTCAATT+TGG + chr1_2:76176223-76176242 Msa0093440:intron 35.0%
AGTTATCAAGTACCTTACCT+TGG + chr1_2:76176406-76176425 Msa0093440:intron 35.0%
GTCAAATTGGTCACAATATG+TGG - chr1_2:76176752-76176771 None:intergenic 35.0%
! TGTGACCAATTTGACGTTTT+AGG + chr1_2:76176757-76176776 Msa0093440:intron 35.0%
AGACACCTAAAACGTCAAAT+TGG - chr1_2:76176765-76176784 None:intergenic 35.0%
TAAGATCAGGGTTCAAACAT+CGG + chr1_2:76176986-76177005 Msa0093440:intron 35.0%
GTAGTTACTCAACAATTGCA+TGG + chr1_2:76177092-76177111 Msa0093440:intron 35.0%
ATGGGTGGCTTCATTAAAAA+AGG + chr1_2:76177111-76177130 Msa0093440:intron 35.0%
TGGGTGGCTTCATTAAAAAA+GGG + chr1_2:76177112-76177131 Msa0093440:intron 35.0%
AATAAAACTCCTCTCCACAT+TGG - chr1_2:76177304-76177323 None:intergenic 35.0%
TATTTCCCTGTTGCTCTTAT+TGG + chr1_2:76177349-76177368 Msa0093440:CDS 35.0%
ATTTCCCTGTTGCTCTTATT+GGG + chr1_2:76177350-76177369 Msa0093440:CDS 35.0%
AATACCCAATAAGAGCAACA+GGG - chr1_2:76177357-76177376 None:intergenic 35.0%
!! CTTATTGGGTATTGGATGTT+TGG + chr1_2:76177364-76177383 Msa0093440:CDS 35.0%
TCATGTTATAGGAAGCTATC+AGG + chr1_2:76177468-76177487 Msa0093440:CDS 35.0%
AAGCTATCAGGTATGTATGA+TGG + chr1_2:76177480-76177499 Msa0093440:intron 35.0%
GTCTCAATCATGTCAAAAAC+AGG - chr1_2:76177608-76177627 None:intergenic 35.0%
CATTGCGAACAACAAATCTT+AGG - chr1_2:76177670-76177689 None:intergenic 35.0%
GTTGTTCGCAATGTTTATGT+TGG + chr1_2:76177677-76177696 Msa0093440:CDS 35.0%
TTCAGCATTCACAATGTTTG+TGG + chr1_2:76177931-76177950 Msa0093440:intron 35.0%
TCAGCATTCACAATGTTTGT+GGG + chr1_2:76177932-76177951 Msa0093440:intron 35.0%
GGACTTACAAAATATGTGGT+GGG - chr1_2:76178016-76178035 None:intergenic 35.0%
TGGACTTACAAAATATGTGG+TGG - chr1_2:76178017-76178036 None:intergenic 35.0%
!! TTGCTATTTACAAACCCAAG+AGG + chr1_2:76178147-76178166 Msa0093440:CDS 35.0%
! CTATTGGTGACAGAATCATA+AGG - chr1_2:76178325-76178344 None:intergenic 35.0%
CTTATGATTCTGTCACCAAT+AGG + chr1_2:76178323-76178342 Msa0093440:CDS 35.0%
TCATGGATGCATGTGTATAA+TGG + chr1_2:76178402-76178421 Msa0093440:three_prime_UTR 35.0%
ATGCAAGATATGACAAAGGT+AGG - chr1_2:76178442-76178461 None:intergenic 35.0%
TTTCGTAAGAATGCTTTGGT+TGG + chr1_2:76178479-76178498 Msa0093440:three_prime_UTR 35.0%
!!! GTTTTAGCTCTCTCAGAAAA+TGG + chr1_2:76178564-76178583 Msa0093440:three_prime_UTR 35.0%
TGGAGTTAGATAAGGAGAAA+GGG - chr1_2:76178718-76178737 None:intergenic 35.0%
ATGGAGTTAGATAAGGAGAA+AGG - chr1_2:76178719-76178738 None:intergenic 35.0%
AAAACCAGTTGCTTCTTCAG+AGG + chr1_2:76173858-76173877 Msa0093440:CDS 40.0%
! TGCTGAGAAAGACACCTTTT+CGG - chr1_2:76173884-76173903 None:intergenic 40.0%
CTTCAAGGAATGCAAAATGG+TGG + chr1_2:76174120-76174139 Msa0093440:CDS 40.0%
! TTTTCACAACGTTACTGCCA+TGG + chr1_2:76174151-76174170 Msa0093440:CDS 40.0%
TTGACAAACCAACACCGTTT+AGG + chr1_2:76174476-76174495 Msa0093440:intron 40.0%
AAGAAGACAACGATCTTCGT+TGG + chr1_2:76174591-76174610 Msa0093440:intron 40.0%
GAAAATCATATAACCTCCCC+GGG + chr1_2:76175337-76175356 Msa0093440:intron 40.0%
AAAATCATATAACCTCCCCG+GGG + chr1_2:76175338-76175357 Msa0093440:intron 40.0%
AGACGAAATTTAAATCCCCC+GGG - chr1_2:76175357-76175376 None:intergenic 40.0%
GAGACGAAATTTAAATCCCC+CGG - chr1_2:76175358-76175377 None:intergenic 40.0%
GTTTGGTCATAAGGGAAGTA+AGG - chr1_2:76175508-76175527 None:intergenic 40.0%
AATCCGGAGTTTGGTCATAA+GGG - chr1_2:76175516-76175535 None:intergenic 40.0%
TAATCCGGAGTTTGGTCATA+AGG - chr1_2:76175517-76175536 None:intergenic 40.0%
TAATCACCCTCTACACTCTA+TGG + chr1_2:76175710-76175729 Msa0093440:CDS 40.0%
CATTTGCCATAGAGTGTAGA+GGG - chr1_2:76175719-76175738 None:intergenic 40.0%
! TATCTGTCAAACCGTTTTCC+TGG - chr1_2:76175763-76175782 None:intergenic 40.0%
GTTTGACAGATACCATGAGT+TGG + chr1_2:76175771-76175790 Msa0093440:CDS 40.0%
! GAAGCATTTGGAGAAAAGCT+TGG + chr1_2:76175799-76175818 Msa0093440:CDS 40.0%
!! GTTGATATGTGAAGTTGGTG+TGG + chr1_2:76175846-76175865 Msa0093440:CDS 40.0%
TGGTGTGGACATTGTTTACA+TGG + chr1_2:76175861-76175880 Msa0093440:CDS 40.0%
GACATTGTTTACATGGTCAC+CGG + chr1_2:76175868-76175887 Msa0093440:CDS 40.0%
ACATTGTTTACATGGTCACC+GGG + chr1_2:76175869-76175888 Msa0093440:CDS 40.0%
TTATGAGAGAGCCAAACTCA+TGG + chr1_2:76176340-76176359 Msa0093440:intron 40.0%
ACCATTGGTATCCATGAGTT+TGG - chr1_2:76176354-76176373 None:intergenic 40.0%
TTATTGAGAATGGGTCGTGA+TGG - chr1_2:76176592-76176611 None:intergenic 40.0%
TTACTCAACAATTGCATGGG+TGG + chr1_2:76177096-76177115 Msa0093440:intron 40.0%
CAATACCCAATAAGAGCAAC+AGG - chr1_2:76177358-76177377 None:intergenic 40.0%
CTGTTGCTCTTATTGGGTAT+TGG + chr1_2:76177356-76177375 Msa0093440:CDS 40.0%
TGACATGATTGAGACCGTAA+TGG + chr1_2:76177613-76177632 Msa0093440:CDS 40.0%
ACAAATCTTAGGAGTCGAGT+TGG - chr1_2:76177659-76177678 None:intergenic 40.0%
!! GGTGAGCACCTTTCTAAAAT+TGG + chr1_2:76177698-76177717 Msa0093440:intron 40.0%
!! ATCCGATGATGGAGATTTCA+TGG + chr1_2:76177828-76177847 Msa0093440:intron 40.0%
!! TCCGATGATGGAGATTTCAT+GGG + chr1_2:76177829-76177848 Msa0093440:intron 40.0%
ACCCATGAAATCTCCATCAT+CGG - chr1_2:76177833-76177852 None:intergenic 40.0%
GGAATAACCTTCCCATTCTT+TGG + chr1_2:76177953-76177972 Msa0093440:CDS 40.0%
CCAATCCTCCAAAAAATCCA+AGG - chr1_2:76177985-76178004 None:intergenic 40.0%
!!! CCTTGGATTTTTTGGAGGAT+TGG + chr1_2:76177982-76178001 Msa0093440:CDS 40.0%
CAAGACAAGCTAAACCTCTT+GGG - chr1_2:76178164-76178183 None:intergenic 40.0%
TGCAATTGAACATACCCAGT+TGG - chr1_2:76178192-76178211 None:intergenic 40.0%
! TTGGTGACAGAATCATAAGG+AGG - chr1_2:76178322-76178341 None:intergenic 40.0%
ATGATTCTGTCACCAATAGG+TGG + chr1_2:76178326-76178345 Msa0093440:CDS 40.0%
! ATTAGCCTCAATCCACCTAT+TGG - chr1_2:76178341-76178360 None:intergenic 40.0%
ATACTCAATGCCAAGTCCTA+CGG + chr1_2:76178362-76178381 Msa0093440:CDS 40.0%
AGTATAGAAACCGTAGGACT+TGG - chr1_2:76178375-76178394 None:intergenic 40.0%
TCGTCAAGTATAGAAACCGT+AGG - chr1_2:76178381-76178400 None:intergenic 40.0%
! AATTGTTTGTAATGGAGGGG+AGG + chr1_2:76178533-76178552 Msa0093440:three_prime_UTR 40.0%
! ATTGTTTGTAATGGAGGGGA+GGG + chr1_2:76178534-76178553 Msa0093440:three_prime_UTR 40.0%
TTTCTCAGCACAAGAACCAG+AGG + chr1_2:76173894-76173913 Msa0093440:CDS 45.0%
GGCTTCCCATAACTTCTTCA+AGG + chr1_2:76174105-76174124 Msa0093440:CDS 45.0%
ATACCATCCAAGACTTGCCA+TGG - chr1_2:76174207-76174226 None:intergenic 45.0%
AAATCATATAACCTCCCCGG+GGG + chr1_2:76175339-76175358 Msa0093440:intron 45.0%
GACGAAATTTAAATCCCCCG+GGG - chr1_2:76175356-76175375 None:intergenic 45.0%
CTTCCCTTATGACCAAACTC+CGG + chr1_2:76175510-76175529 Msa0093440:intron 45.0%
TGACCAAACTCCGGATTATC+AGG + chr1_2:76175519-76175538 Msa0093440:intron 45.0%
GGAAAGAGGTCCTGATAATC+CGG - chr1_2:76175532-76175551 None:intergenic 45.0%
! CTTCGGTTCTAATGGGAAAG+AGG - chr1_2:76175546-76175565 None:intergenic 45.0%
CCATTTGCCATAGAGTGTAG+AGG - chr1_2:76175720-76175739 None:intergenic 45.0%
CCTCTACACTCTATGGCAAA+TGG + chr1_2:76175717-76175736 Msa0093440:CDS 45.0%
GAGATGCATGAAATGGTTCC+AGG + chr1_2:76175742-76175761 Msa0093440:CDS 45.0%
ATGCTTCTTGTCCCAACTCA+TGG - chr1_2:76175786-76175805 None:intergenic 45.0%
!! GAGTTGGGACAAGAAGCATT+TGG + chr1_2:76175787-76175806 Msa0093440:CDS 45.0%
TTGGAGAAAAGCTTGGACTC+TGG + chr1_2:76175806-76175825 Msa0093440:CDS 45.0%
CATTGTTTACATGGTCACCG+GGG + chr1_2:76175870-76175889 Msa0093440:CDS 45.0%
ATTGTTTACATGGTCACCGG+GGG + chr1_2:76175871-76175890 Msa0093440:CDS 45.0%
! TTTCTGCAGTGATTTTCCCC+CGG - chr1_2:76175890-76175909 None:intergenic 45.0%
GGAGTTGAAGTTGGGAAGAT+GGG - chr1_2:76176001-76176020 None:intergenic 45.0%
TGGAGTTGAAGTTGGGAAGA+TGG - chr1_2:76176002-76176021 None:intergenic 45.0%
CCAGCAATGGAGTTGAAGTT+GGG - chr1_2:76176009-76176028 None:intergenic 45.0%
ACCAGCAATGGAGTTGAAGT+TGG - chr1_2:76176010-76176029 None:intergenic 45.0%
CTGCAGCAATCATGTCTTTG+AGG + chr1_2:76176040-76176059 Msa0093440:CDS 45.0%
GCCAAACTCATGGATACCAA+TGG + chr1_2:76176350-76176369 Msa0093440:intron 45.0%
ACCTTACCTTGGATGATCGA+AGG + chr1_2:76176417-76176436 Msa0093440:intron 45.0%
TCCTTCGATCATCCAAGGTA+AGG - chr1_2:76176421-76176440 None:intergenic 45.0%
ATGGATCCTTCGATCATCCA+AGG - chr1_2:76176426-76176445 None:intergenic 45.0%
ACACGTTGCTCATCAGTAAG+AGG - chr1_2:76176489-76176508 None:intergenic 45.0%
AAAGGGAGTTCAACCAGATG+TGG + chr1_2:76177129-76177148 Msa0093440:intron 45.0%
!! AGTTGTGGCTTTGTAGCCAT+AGG - chr1_2:76177155-76177174 None:intergenic 45.0%
TACAAAGCCACAACTACACC+AGG + chr1_2:76177160-76177179 Msa0093440:intron 45.0%
AACAGTTCCTGGTGTAGTTG+TGG - chr1_2:76177170-76177189 None:intergenic 45.0%
GATGTTGCATTTGCCTATGC+CGG + chr1_2:76177214-76177233 Msa0093440:CDS 45.0%
GCTGCAACTATAAGCCAAGT+AGG - chr1_2:76177430-76177449 None:intergenic 45.0%
!! CAAGGAGAGCACCAAAGAAT+GGG - chr1_2:76177967-76177986 None:intergenic 45.0%
!!! GGTGCTCTCCTTGGATTTTT+TGG + chr1_2:76177974-76177993 Msa0093440:CDS 45.0%
!!! GCTCTCCTTGGATTTTTTGG+AGG + chr1_2:76177977-76177996 Msa0093440:CDS 45.0%
TGTAGCTTCCTTGCGTTATG+TGG + chr1_2:76178123-76178142 Msa0093440:intron 45.0%
ATAGCAAGCCACATAACGCA+AGG - chr1_2:76178134-76178153 None:intergenic 45.0%
CCAAGACAAGCTAAACCTCT+TGG - chr1_2:76178165-76178184 None:intergenic 45.0%
!! CCAAGAGGTTTAGCTTGTCT+TGG + chr1_2:76178162-76178181 Msa0093440:CDS 45.0%
GTGACAGAATCATAAGGAGG+AGG - chr1_2:76178319-76178338 None:intergenic 45.0%
!! TGTCACCAATAGGTGGATTG+AGG + chr1_2:76178333-76178352 Msa0093440:CDS 45.0%
!! AAAAATATAAATAAAAAAAG+TGG + chr1_2:76174711-76174730 Msa0093440:intron 5.0%
!!! ATTTTTTAAAAAAAAAACTA+AGG + chr1_2:76175274-76175293 Msa0093440:intron 5.0%
!!! TTATTTTATATATTAATTTC+TGG - chr1_2:76176883-76176902 None:intergenic 5.0%
!!! TTAAAGAAAAATAAATTTTA+TGG - chr1_2:76178037-76178056 None:intergenic 5.0%
!!! TATTTTTCTTTAAATATATT+TGG + chr1_2:76178044-76178063 Msa0093440:intron 5.0%
TGTTGGAGACTCAGTTCCCA+TGG - chr1_2:76173833-76173852 None:intergenic 50.0%
TGCTTCTTCAGAGGCCGAAA+AGG + chr1_2:76173867-76173886 Msa0093440:CDS 50.0%
CACAACGTTACTGCCATGGT+TGG + chr1_2:76174155-76174174 Msa0093440:CDS 50.0%
CTTGAGTCTTCCATCTGCCA+TGG + chr1_2:76174187-76174206 Msa0093440:CDS 50.0%
GAAATTTAAATCCCCCGGGG+AGG - chr1_2:76175353-76175372 None:intergenic 50.0%
! CTGAGCCCAATTTGTTCGAG+AGG - chr1_2:76175406-76175425 None:intergenic 50.0%
CTCTCGAACAAATTGGGCTC+AGG + chr1_2:76175404-76175423 Msa0093440:intron 50.0%
TCGAACAAATTGGGCTCAGG+TGG + chr1_2:76175407-76175426 Msa0093440:intron 50.0%
GGTCCTGATAATCCGGAGTT+TGG - chr1_2:76175525-76175544 None:intergenic 50.0%
CCCAACTTCAACTCCATTGC+TGG + chr1_2:76176006-76176025 Msa0093440:CDS 50.0%
CTCCATTGCTGGTATCTCCT+TGG + chr1_2:76176017-76176036 Msa0093440:CDS 50.0%
AGCCAAGGAGATACCAGCAA+TGG - chr1_2:76176022-76176041 None:intergenic 50.0%
AGACATGATTGCTGCAGCCA+AGG - chr1_2:76176037-76176056 None:intergenic 50.0%
!! GAGAATGGGTCGTGATGGAT+TGG - chr1_2:76176587-76176606 None:intergenic 50.0%
GTTCAACCAGATGTGGCCTA+TGG + chr1_2:76177136-76177155 Msa0093440:intron 50.0%
TTGTAGCCATAGGCCACATC+TGG - chr1_2:76177145-76177164 None:intergenic 50.0%
CTCCAACACCACATTGTGTC+CGG - chr1_2:76177236-76177255 None:intergenic 50.0%
ACACCGGAGAAACCATCCAA+GGG + chr1_2:76177277-76177296 Msa0093440:CDS 50.0%
AACCATCCAAGGGTCCAATG+TGG + chr1_2:76177287-76177306 Msa0093440:CDS 50.0%
!! GAGAGCACCAAAGAATGGGA+AGG - chr1_2:76177963-76177982 None:intergenic 50.0%
!! CCAAGGAGAGCACCAAAGAA+TGG - chr1_2:76177968-76177987 None:intergenic 50.0%
!! CCATTCTTTGGTGCTCTCCT+TGG + chr1_2:76177965-76177984 Msa0093440:CDS 50.0%
TGGAGACTCAGTTCCCATGG+TGG - chr1_2:76173830-76173849 None:intergenic 55.0%
! TCGGCCTCTGAAGAAGCAAC+TGG - chr1_2:76173865-76173884 None:intergenic 55.0%
GTTACTGCCATGGTTGGAGC+TGG + chr1_2:76174161-76174180 Msa0093440:CDS 55.0%
CAAGACACCAGCTCCAACCA+TGG - chr1_2:76174171-76174190 None:intergenic 55.0%
CCAAGACTTGCCATGGCAGA+TGG - chr1_2:76174200-76174219 None:intergenic 55.0%
CCATCTGCCATGGCAAGTCT+TGG + chr1_2:76174197-76174216 Msa0093440:CDS 55.0%
CTGCCATGGCAAGTCTTGGA+TGG + chr1_2:76174201-76174220 Msa0093440:CDS 55.0%
ATGTCGAATTGCAGGGGTCC+TGG + chr1_2:76175661-76175680 Msa0093440:intron 55.0%
TGCCTATGCCGGACACAATG+TGG + chr1_2:76177225-76177244 Msa0093440:CDS 55.0%
CACCACATTGTGTCCGGCAT+AGG - chr1_2:76177230-76177249 None:intergenic 55.0%
TGCCGGACACAATGTGGTGT+TGG + chr1_2:76177231-76177250 Msa0093440:CDS 55.0%
AGCAACAATCCCGTCCACAC+CGG + chr1_2:76177261-76177280 Msa0093440:CDS 55.0%
ATGGTTTCTCCGGTGTGGAC+GGG - chr1_2:76177273-76177292 None:intergenic 55.0%
GATGGTTTCTCCGGTGTGGA+CGG - chr1_2:76177274-76177293 None:intergenic 55.0%
CTTGGATGGTTTCTCCGGTG+TGG - chr1_2:76177278-76177297 None:intergenic 55.0%
CACACCGGAGAAACCATCCA+AGG + chr1_2:76177276-76177295 Msa0093440:CDS 55.0%
GGACCCTTGGATGGTTTCTC+CGG - chr1_2:76177283-76177302 None:intergenic 55.0%
CTCCACATTGGACCCTTGGA+TGG - chr1_2:76177292-76177311 None:intergenic 55.0%
TCCAAGGGTCCAATGTGGAG+AGG + chr1_2:76177292-76177311 Msa0093440:CDS 55.0%
TCCTCTCCACATTGGACCCT+TGG - chr1_2:76177296-76177315 None:intergenic 55.0%
GAATTGCAGGGGTCCTGGTG+TGG + chr1_2:76175666-76175685 Msa0093440:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 76173688 76178739 76173688 ID=Msa0093440;Name=Msa0093440
chr1_2 mRNA 76173688 76178739 76173688 ID=Msa0093440-mRNA-1;Parent=Msa0093440;Name=Msa0093440-mRNA-1;_AED=0.12;_eAED=0.12;_QI=144|0.85|0.87|1|1|1|8|342|426
chr1_2 exon 76173688 76173915 76173688 ID=Msa0093440-mRNA-1:exon:26809;Parent=Msa0093440-mRNA-1
chr1_2 exon 76174065 76174222 76174065 ID=Msa0093440-mRNA-1:exon:26810;Parent=Msa0093440-mRNA-1
chr1_2 exon 76175675 76176061 76175675 ID=Msa0093440-mRNA-1:exon:26811;Parent=Msa0093440-mRNA-1
chr1_2 exon 76177204 76177489 76177204 ID=Msa0093440-mRNA-1:exon:26812;Parent=Msa0093440-mRNA-1
chr1_2 exon 76177593 76177698 76177593 ID=Msa0093440-mRNA-1:exon:26813;Parent=Msa0093440-mRNA-1
chr1_2 exon 76177936 76178027 76177936 ID=Msa0093440-mRNA-1:exon:26814;Parent=Msa0093440-mRNA-1
chr1_2 exon 76178128 76178196 76178128 ID=Msa0093440-mRNA-1:exon:26815;Parent=Msa0093440-mRNA-1
chr1_2 exon 76178299 76178739 76178299 ID=Msa0093440-mRNA-1:exon:26816;Parent=Msa0093440-mRNA-1
chr1_2 five_prime_UTR 76173688 76173831 76173688 ID=Msa0093440-mRNA-1:five_prime_utr;Parent=Msa0093440-mRNA-1
chr1_2 CDS 76173832 76173915 76173832 ID=Msa0093440-mRNA-1:cds;Parent=Msa0093440-mRNA-1
chr1_2 CDS 76174065 76174222 76174065 ID=Msa0093440-mRNA-1:cds;Parent=Msa0093440-mRNA-1
chr1_2 CDS 76175675 76176061 76175675 ID=Msa0093440-mRNA-1:cds;Parent=Msa0093440-mRNA-1
chr1_2 CDS 76177204 76177489 76177204 ID=Msa0093440-mRNA-1:cds;Parent=Msa0093440-mRNA-1
chr1_2 CDS 76177593 76177698 76177593 ID=Msa0093440-mRNA-1:cds;Parent=Msa0093440-mRNA-1
chr1_2 CDS 76177936 76178027 76177936 ID=Msa0093440-mRNA-1:cds;Parent=Msa0093440-mRNA-1
chr1_2 CDS 76178128 76178196 76178128 ID=Msa0093440-mRNA-1:cds;Parent=Msa0093440-mRNA-1
chr1_2 CDS 76178299 76178397 76178299 ID=Msa0093440-mRNA-1:cds;Parent=Msa0093440-mRNA-1
chr1_2 three_prime_UTR 76178398 76178739 76178398 ID=Msa0093440-mRNA-1:three_prime_utr;Parent=Msa0093440-mRNA-1
Gene Sequence

>Msa0093440

ATGGGAACTGAGTCTCCAACAAATGAAAAACCAGTTGCTTCTTCAGAGGCCGAAAAGGTGTCTTTCTCAGCACAAGAACCAGAGATAGATAAAAGAACAGCTGAACAAAAGAAAATTGATGATTGGCTTCCCATAACTTCTTCAAGGAATGCAAAATGGTGGTACGCAGCTTTTCACAACGTTACTGCCATGGTTGGAGCTGGTGTCTTGAGTCTTCCATCTGCCATGGCAAGTCTTGGATGGGGTCCTGGTGTGGTGATTCTAATTTTATCATGGATAATCACCCTCTACACTCTATGGCAAATGGTTGAGATGCATGAAATGGTTCCAGGAAAACGGTTTGACAGATACCATGAGTTGGGACAAGAAGCATTTGGAGAAAAGCTTGGACTCTGGATTGTCGTGCCACAACAGTTGATATGTGAAGTTGGTGTGGACATTGTTTACATGGTCACCGGGGGAAAATCACTGCAGAAAATTCATGATTTGGTGTGTAAAAAAAATTGCAAATCAATGAAAACTACTTATTTCATCATGATATTTGCCTCTGTTCATTTTATTCTTGCCCATCTTCCCAACTTCAACTCCATTGCTGGTATCTCCTTGGCTGCAGCAATCATGTCTTTGAGTGCTTTAGGTGATGTTGCATTTGCCTATGCCGGACACAATGTGGTGTTGGAGATTCAAGCAACAATCCCGTCCACACCGGAGAAACCATCCAAGGGTCCAATGTGGAGAGGAGTTTTATTAGCATATATTGTTGTAGCTTTGTGTTATTTCCCTGTTGCTCTTATTGGGTATTGGATGTTTGGCAATTCAGTTGCTGATAATATTCTTACTTCTCTTAATAAACCTACTTGGCTTATAGTTGCAGCTAACATGTTTGTTGTCATTCATGTTATAGGAAGCTATCAGTTGTATGCAATGCCTGTTTTTGACATGATTGAGACCGTAATGGTCAAAAAATTGCGTTTCAAGCCAACTCGACTCCTAAGATTTGTTGTTCGCAATGTTTATGTTGCATTCACAATGTTTGTGGGAATAACCTTCCCATTCTTTGGTGCTCTCCTTGGATTTTTTGGAGGATTGGCATTTGCTCCCACCACATATTTTCTTCCTTGCGTTATGTGGCTTGCTATTTACAAACCCAAGAGGTTTAGCTTGTCTTGGTTCACCAACTGGATATGCATTATACTTGGCCTCCTCCTTATGATTCTGTCACCAATAGGTGGATTGAGGCTAATCATACTCAATGCCAAGTCCTACGGTTTCTATACTTGA
Protein sequence

>Msa0093440

MGTESPTNEKPVASSEAEKVSFSAQEPEIDKRTAEQKKIDDWLPITSSRNAKWWYAAFHNVTAMVGAGVLSLPSAMASLGWGPGVVILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQEAFGEKLGLWIVVPQQLICEVGVDIVYMVTGGKSLQKIHDLVCKKNCKSMKTTYFIMIFASVHFILAHLPNFNSIAGISLAAAIMSLSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVLLAYIVVALCYFPVALIGYWMFGNSVADNILTSLNKPTWLIVAANMFVVIHVIGSYQLYAMPVFDMIETVMVKKLRFKPTRLLRFVVRNVYVAFTMFVGITFPFFGALLGFFGGLAFAPTTYFLPCVMWLAIYKPKRFSLSWFTNWICIILGLLLMILSPIGGLRLIILNAKSYGFYT*