AlfalfaGEDB | Msa1204350

M. sativa cultivar zhongmu-4 / Msa1204350

KEGG: K20102
GO: -
PFAM: PF04146.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1204350	XP_003609844.1	97.393	652	16	1	1	652	1	651	0.0	1310

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1204350	sp\|Q9LJE5\|ECT2_ARATH	58.996	239	82	3	281	507	378	612	6.79e-89	293

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0094710	Msa1204350	0.822516	2.271893e-53	-8.615850e-47
Msa0140880	Msa1204350	0.815396	9.443854e-52	-8.615850e-47
Msa0333610	Msa1204350	0.808544	2.940370e-50	-8.615850e-47
Msa0366130	Msa1204350	0.810309	1.228712e-50	-8.615850e-47
Msa0369420	Msa1204350	0.816585	5.125553e-52	-8.615850e-47
Msa0463530	Msa1204350	0.800618	1.324530e-48	-8.615850e-47
Msa0489120	Msa1204350	0.811105	8.269143e-51	-8.615850e-47
Msa0817710	Msa1204350	0.822861	1.888388e-53	-8.615850e-47
Msa0866040	Msa1204350	0.800860	1.182270e-48	-8.615850e-47
Msa0866130	Msa1204350	0.830184	3.388524e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1204350	MtrunA17_Chr4g0069011	97.393	652	16	1	1	652	1	651	0.0	1310
Msa1204350	MtrunA17_Chr2g0293641	66.263	661	207	12	1	652	37	690	0.0	846
Msa1204350	MtrunA17_Chr4g0000071	41.996	531	247	19	11	503	54	561	1.75e-100	320
Msa1204350	MtrunA17_Chr2g0309651	42.268	485	235	13	35	506	95	547	7.53e-99	314
Msa1204350	MtrunA17_Chr7g0253191	48.505	301	118	7	224	503	309	593	3.22e-80	267
Msa1204350	MtrunA17_Chr2g0277111	62.434	189	71	0	315	503	264	452	7.70e-79	259
Msa1204350	MtrunA17_Chr6g0461531	54.167	240	84	3	281	503	351	581	2.67e-77	259
Msa1204350	MtrunA17_Chr8g0380431	58.763	194	65	4	281	463	358	547	9.29e-67	228
Msa1204350	MtrunA17_Chr2g0292081	27.000	200	121	6	309	503	240	419	2.50e-11	67.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1204350	AT1G48110.2	49.112	676	265	18	4	642	5	638	0.0	566
Msa1204350	AT1G48110.1	49.112	676	265	18	4	642	5	638	0.0	566
Msa1204350	AT3G17330.1	44.344	663	262	17	1	636	1	583	2.47e-163	481
Msa1204350	AT3G17330.3	44.344	663	262	17	1	636	1	583	2.47e-163	481
Msa1204350	AT3G17330.2	42.644	537	223	14	126	636	4	481	3.50e-116	357
Msa1204350	AT3G13460.2	58.996	239	82	3	281	507	375	609	5.98e-90	293
Msa1204350	AT3G13460.4	58.996	239	82	3	281	507	377	611	6.74e-90	293
Msa1204350	AT3G13460.1	58.996	239	82	3	281	507	378	612	6.90e-90	293
Msa1204350	AT1G79270.2	68.367	196	62	0	309	504	282	477	3.58e-89	287
Msa1204350	AT1G79270.4	68.367	196	62	0	309	504	282	477	3.58e-89	287

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Find 185 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATTATTCAGCTTTCG+AGG	0.481363	8_1:+60064976	None:intergenic
AAAACCTATACAGCAAAGTC+AGG	0.510427	8_1:-60066173	Msa1204350:CDS
AAAACTAAGTTTCTAATGAA+GGG	0.499233	8_1:-60065027	Msa1204350:CDS
AAACCGACAGAAGGTCATGC+AGG	0.599786	8_1:-60065055	Msa1204350:CDS
AAAGCATTAAATATAACGTG+TGG	0.673580	8_1:-60066028	Msa1204350:CDS
AAAGCTACTGGAAAATCTGG+AGG	0.667052	8_1:-60065948	Msa1204350:CDS
AAATGAAGAAATGTAATAAC+TGG	0.334090	8_1:-60064171	Msa1204350:three_prime_UTR
AAATTAAGAAAACCACTGTT+AGG	0.473007	8_1:+60066990	None:intergenic
AAATTGTCTGGTTGAACAAG+AGG	0.565932	8_1:+60067227	None:intergenic
AACCCGTAATTGGTGGGAGC+AGG	0.422335	8_1:+60067732	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTCTCATATTGAGATTAGA+GGG	+	chr8_1:60064169-60064188	None:intergenic	30.0%
AAGTCTCATATTGAGATTAG+AGG	+	chr8_1:60064170-60064189	None:intergenic	30.0%
ATCTTCTCTACTGGAAAAAA+TGG	+	chr8_1:60064676-60064695	None:intergenic	30.0%
TAGAGAAGATGGTAAAAACT+AGG	-	chr8_1:60064686-60064705	Msa1204350:CDS	30.0%
GCAAATTCTATAGTAAGTAG+AGG	-	chr8_1:60064742-60064761	Msa1204350:CDS	30.0%
TCGTTAAACATGTCTTTGAA+TGG	+	chr8_1:60065016-60065035	None:intergenic	30.0%
TTCAAAGACATGTTTAACGA+AGG	-	chr8_1:60065016-60065035	Msa1204350:CDS	30.0%
TGTACAATAAAACCCGTAAT+TGG	+	chr8_1:60065089-60065108	None:intergenic	30.0%
AAAAATAATCACCGTACCTT+TGG	-	chr8_1:60065118-60065137	Msa1204350:CDS	30.0%
CATCTACACCAAAAATTCTA+TGG	+	chr8_1:60065265-60065284	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	60064031	60068799	60064031	ID=Msa1204350;Name=Msa1204350
chr8_1	mRNA	60064031	60068799	60064031	ID=Msa1204350-mRNA-1;Parent=Msa1204350;Name=Msa1204350-mRNA-1;_AED=0.03;_eAED=0.03;_QI=268\|1\|1\|1\|0.83\|0.71\|7\|560\|652
chr8_1	exon	60064031	60065166	60064031	ID=Msa1204350-mRNA-1:exon:19461;Parent=Msa1204350-mRNA-1
chr8_1	exon	60065603	60065815	60065603	ID=Msa1204350-mRNA-1:exon:19460;Parent=Msa1204350-mRNA-1
chr8_1	exon	60065923	60066462	60065923	ID=Msa1204350-mRNA-1:exon:19459;Parent=Msa1204350-mRNA-1
chr8_1	exon	60066968	60067438	60066968	ID=Msa1204350-mRNA-1:exon:19458;Parent=Msa1204350-mRNA-1
chr8_1	exon	60067526	60067599	60067526	ID=Msa1204350-mRNA-1:exon:19457;Parent=Msa1204350-mRNA-1
chr8_1	exon	60067721	60067871	60067721	ID=Msa1204350-mRNA-1:exon:19456;Parent=Msa1204350-mRNA-1
chr8_1	exon	60068598	60068799	60068598	ID=Msa1204350-mRNA-1:exon:19455;Parent=Msa1204350-mRNA-1
chr8_1	five_prime_UTR	60068598	60068799	60068598	ID=Msa1204350-mRNA-1:five_prime_utr;Parent=Msa1204350-mRNA-1
chr8_1	five_prime_UTR	60067806	60067871	60067806	ID=Msa1204350-mRNA-1:five_prime_utr;Parent=Msa1204350-mRNA-1
chr8_1	CDS	60067721	60067805	60067721	ID=Msa1204350-mRNA-1:cds;Parent=Msa1204350-mRNA-1
chr8_1	CDS	60067526	60067599	60067526	ID=Msa1204350-mRNA-1:cds;Parent=Msa1204350-mRNA-1
chr8_1	CDS	60066968	60067438	60066968	ID=Msa1204350-mRNA-1:cds;Parent=Msa1204350-mRNA-1
chr8_1	CDS	60065923	60066462	60065923	ID=Msa1204350-mRNA-1:cds;Parent=Msa1204350-mRNA-1
chr8_1	CDS	60065603	60065815	60065603	ID=Msa1204350-mRNA-1:cds;Parent=Msa1204350-mRNA-1
chr8_1	CDS	60064591	60065166	60064591	ID=Msa1204350-mRNA-1:cds;Parent=Msa1204350-mRNA-1
chr8_1	three_prime_UTR	60064031	60064590	60064031	ID=Msa1204350-mRNA-1:three_prime_utr;Parent=Msa1204350-mRNA-1

Gene Sequence

>Msa1204350

ATGTTTAACGAAGGAGCTCCTGAGTTTGTTGTTGATCAGAGCATGTATTACCCTGCTCCCACCAATTACGGGTTTTATTGTACAGGATTTGAATCACCTGGTGAATGGGAGGACCACCATAGAATTTTTGGTGTAGATGGTCCTGATATTCAGTACACGGGTGCACAAGATGAAAGTTTTCCTTATGTATATTACACACCTAACTATGGATTTGCACAGTCTCCATACAATCCATACAATCCTTATATTCCAGGTGCTATGATTGGAGTTGATGGTTCATTTGGAGGAGAACAGCAGTATTACTCCCTCCCCAATTATCAAAACCCCATTTCTTCGCCAACTTATATTCCTCTTGTTCAACCAGACAATTTTCATCATAGTTCTGTTGACTCATTATATGATAACAGTGCTTCTGTCAATAGACTTGATGGAAGAGGTTCGAAGCATAAGTTCAATTCAGCTTCTGCTGCTTTTACTAGGAACTCTTCAAAACCATCATCAAATCAGACAAGTTCCTTCCTCAGGGTACCCGAGGGGCCAAGAGCTAATGCTTTGGCAAAGAAAGATTCGACAAATGGAAGTGTTCCTAACAGTGGTTTTCTTAATTTTGCTTCATCACCTTCCCATCAGGCTAGAAGTGCTGATGTCTCATTCCAGTCTGTAGATACTTTTTCCAATGGAAATGTTTTGCCCCATCATAATCAATTCAAAGGAGCTGCCCCGTTGAGTAATGGGTTTTCTGACTATGGATCTAATGCTAATGGGCAGTCTGCAATTGCTAAACTTCGACCAAAGGTTCATGTTGCTCCCAGTGATGTAAGTAGAAGCGGTGATGTATTATTGGGTGAACAAAATCGGGGCCCTAGAATTAGTAGGCCAAAACATCATCTGCCTATCAAAACCTATACAGCAAAGTCAGGAGATGCTAACTCACAAGAGAACGTCATTTATACTGATCAATATAACAGGGAGGACTTCCCTATTGACAATGAAATTGCTAAGTTTTTTGTTATAAAATCATACAGTGAGGATGACGTTCACAAAAGCATTAAATATAACGTGTGGTCATCAACACCTCATGGAAACAAGAAACTGCAGAGTGCTTATGAAGATGCTAGGAGAAAAGCTACTGGAAAATCTGGAGGCTGTCCTATCTTTCTTTTCTTTTCGGTTAATGCCAGCGGTCAATTTTGTGGAGTTGCTGAGATGGTTGGTCCTGTTGACTTCAATATGGATATGGACTTCTGGCAGCAAGATAAATGGAGTGGGAGCTTCCCTGTAAAGTGGCACATGATAAAAGATGTGCCAAATGGAAATTTTAGGCACATAATACTAGAGAACAATGAGTTCAAGCCTGTAACTAACAGCCGAGACACACAAGAGATAATGTATAGAAAGGGTCTGGAAATGCTGAAGATATTCAAAAATTATACTTTGAAGACATCTTTGCTTGATGACTTTATTTACTATGAAAACCGACAGAAGGTCATGCAGGAGGAGAAAACTAAGTTTCTAATGAAGGGTTTTGGAAGTATACCAGTGTTGGCGCCACCTCGAAAGCTGAATAATGTTTTTGAAATTCATCCTGCAAGTGATGAGAAAAATTTAAAGACAGATGAACTTGGTAGCGTAAAACATACTTCAATTTCAAATGCGGCACATACTGTTAATAGTTCTGATGTCACCAGCACTACATCTGTGGATGAAAAGGTTGAGAATGATGCGGTTGACAAGCAAGATATTTCTTCTGTTCTGAAGATTGGTTCAGTCACCATTACCCCAAGACAGGTAGAGACGAAACCATCTAATACAGAACCAATTGATGTTGTCACAGTCGGCTCAATGCAAGTCAGAGTTAATGGATTTTCTGAGTCTTCTGGTGTTTTAAAGGTTGGGAGTATCCCACTTGATCCAAGATCTCTACAGGCAGGCAAAGGAACCACTTACATCAAAACTTGA

Protein sequence

>Msa1204350

MFNEGAPEFVVDQSMYYPAPTNYGFYCTGFESPGEWEDHHRIFGVDGPDIQYTGAQDESFPYVYYTPNYGFAQSPYNPYNPYIPGAMIGVDGSFGGEQQYYSLPNYQNPISSPTYIPLVQPDNFHHSSVDSLYDNSASVNRLDGRGSKHKFNSASAAFTRNSSKPSSNQTSSFLRVPEGPRANALAKKDSTNGSVPNSGFLNFASSPSHQARSADVSFQSVDTFSNGNVLPHHNQFKGAAPLSNGFSDYGSNANGQSAIAKLRPKVHVAPSDVSRSGDVLLGEQNRGPRISRPKHHLPIKTYTAKSGDANSQENVIYTDQYNREDFPIDNEIAKFFVIKSYSEDDVHKSIKYNVWSSTPHGNKKLQSAYEDARRKATGKSGGCPIFLFFSVNASGQFCGVAEMVGPVDFNMDMDFWQQDKWSGSFPVKWHMIKDVPNGNFRHIILENNEFKPVTNSRDTQEIMYRKGLEMLKIFKNYTLKTSLLDDFIYYENRQKVMQEEKTKFLMKGFGSIPVLAPPRKLNNVFEIHPASDEKNLKTDELGSVKHTSISNAAHTVNSSDVTSTTSVDEKVENDAVDKQDISSVLKIGSVTITPRQVETKPSNTEPIDVVTVGSMQVRVNGFSESSGVLKVGSIPLDPRSLQAGKGTTYIKT*