Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333090 | XP_003609844.1 | 97.393 | 652 | 16 | 1 | 1 | 652 | 1 | 651 | 0.0 | 1310 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333090 | sp|Q9LJE5|ECT2_ARATH | 58.996 | 239 | 82 | 3 | 281 | 507 | 378 | 612 | 6.79e-89 | 293 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333090 | G7JQ12 | 97.393 | 652 | 16 | 1 | 1 | 652 | 1 | 651 | 0.0 | 1310 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0650080 | Msa1333090 | 0.806861 | 6.696771e-50 | -8.615850e-47 |
| Msa0754560 | Msa1333090 | 0.800437 | 1.442202e-48 | -8.615850e-47 |
| Msa0817710 | Msa1333090 | 0.800230 | 1.588832e-48 | -8.615850e-47 |
| Msa1258070 | Msa1333090 | 0.812929 | 3.310249e-51 | -8.615850e-47 |
| Msa1268230 | Msa1333090 | 0.829297 | 5.569888e-55 | -8.615850e-47 |
| Msa1328240 | Msa1333090 | 0.863077 | 3.220029e-64 | -8.615850e-47 |
| Msa0379870 | Msa1333090 | 0.832268 | 1.041483e-55 | -8.615850e-47 |
| Msa0429190 | Msa1333090 | 0.827128 | 1.856023e-54 | -8.615850e-47 |
| Msa0471930 | Msa1333090 | 0.804845 | 1.776763e-49 | -8.615850e-47 |
| Msa0999240 | Msa1333090 | 0.805468 | 1.315648e-49 | -8.615850e-47 |
| Msa1149470 | Msa1333090 | 0.809822 | 1.564767e-50 | -8.615850e-47 |
| Msa1204350 | Msa1333090 | 0.956065 | 7.077649e-114 | -8.615850e-47 |
| Msa0866040 | Msa1333090 | 0.834172 | 3.494323e-56 | -8.615850e-47 |
| Msa0866130 | Msa1333090 | 0.831088 | 2.035126e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333090 | MtrunA17_Chr4g0069011 | 97.393 | 652 | 16 | 1 | 1 | 652 | 1 | 651 | 0.0 | 1310 |
| Msa1333090 | MtrunA17_Chr2g0293641 | 66.263 | 661 | 207 | 12 | 1 | 652 | 37 | 690 | 0.0 | 846 |
| Msa1333090 | MtrunA17_Chr4g0000071 | 41.996 | 531 | 247 | 19 | 11 | 503 | 54 | 561 | 1.75e-100 | 320 |
| Msa1333090 | MtrunA17_Chr2g0309651 | 42.268 | 485 | 235 | 13 | 35 | 506 | 95 | 547 | 7.53e-99 | 314 |
| Msa1333090 | MtrunA17_Chr7g0253191 | 48.505 | 301 | 118 | 7 | 224 | 503 | 309 | 593 | 3.22e-80 | 267 |
| Msa1333090 | MtrunA17_Chr2g0277111 | 62.434 | 189 | 71 | 0 | 315 | 503 | 264 | 452 | 7.70e-79 | 259 |
| Msa1333090 | MtrunA17_Chr6g0461531 | 54.167 | 240 | 84 | 3 | 281 | 503 | 351 | 581 | 2.67e-77 | 259 |
| Msa1333090 | MtrunA17_Chr8g0380431 | 58.763 | 194 | 65 | 4 | 281 | 463 | 358 | 547 | 9.29e-67 | 228 |
| Msa1333090 | MtrunA17_Chr2g0292081 | 27.000 | 200 | 121 | 6 | 309 | 503 | 240 | 419 | 2.50e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333090 | AT1G48110.2 | 49.112 | 676 | 265 | 18 | 4 | 642 | 5 | 638 | 0.0 | 566 |
| Msa1333090 | AT1G48110.1 | 49.112 | 676 | 265 | 18 | 4 | 642 | 5 | 638 | 0.0 | 566 |
| Msa1333090 | AT3G17330.1 | 44.344 | 663 | 262 | 17 | 1 | 636 | 1 | 583 | 2.47e-163 | 481 |
| Msa1333090 | AT3G17330.3 | 44.344 | 663 | 262 | 17 | 1 | 636 | 1 | 583 | 2.47e-163 | 481 |
| Msa1333090 | AT3G17330.2 | 42.644 | 537 | 223 | 14 | 126 | 636 | 4 | 481 | 3.50e-116 | 357 |
| Msa1333090 | AT3G13460.2 | 58.996 | 239 | 82 | 3 | 281 | 507 | 375 | 609 | 5.98e-90 | 293 |
| Msa1333090 | AT3G13460.4 | 58.996 | 239 | 82 | 3 | 281 | 507 | 377 | 611 | 6.74e-90 | 293 |
| Msa1333090 | AT3G13460.1 | 58.996 | 239 | 82 | 3 | 281 | 507 | 378 | 612 | 6.90e-90 | 293 |
| Msa1333090 | AT1G79270.2 | 68.367 | 196 | 62 | 0 | 309 | 504 | 282 | 477 | 3.58e-89 | 287 |
| Msa1333090 | AT1G79270.4 | 68.367 | 196 | 62 | 0 | 309 | 504 | 282 | 477 | 3.58e-89 | 287 |
| Msa1333090 | AT1G79270.3 | 68.367 | 196 | 62 | 0 | 309 | 504 | 282 | 477 | 3.58e-89 | 287 |
| Msa1333090 | AT3G13060.2 | 60.714 | 224 | 84 | 1 | 280 | 503 | 345 | 564 | 5.89e-89 | 290 |
| Msa1333090 | AT3G13060.4 | 60.714 | 224 | 84 | 1 | 280 | 503 | 335 | 554 | 6.89e-89 | 290 |
| Msa1333090 | AT3G13060.3 | 60.714 | 224 | 84 | 1 | 280 | 503 | 323 | 542 | 6.89e-89 | 289 |
| Msa1333090 | AT3G13060.6 | 60.714 | 224 | 84 | 1 | 280 | 503 | 323 | 542 | 6.89e-89 | 289 |
| Msa1333090 | AT1G79270.1 | 68.367 | 196 | 62 | 0 | 309 | 504 | 297 | 492 | 7.00e-89 | 287 |
| Msa1333090 | AT5G61020.2 | 55.365 | 233 | 92 | 3 | 281 | 505 | 199 | 427 | 9.44e-83 | 270 |
| Msa1333090 | AT5G61020.1 | 55.365 | 233 | 92 | 3 | 281 | 505 | 201 | 429 | 9.96e-83 | 270 |
| Msa1333090 | AT5G58190.2 | 56.054 | 223 | 90 | 3 | 285 | 503 | 275 | 493 | 1.63e-77 | 257 |
| Msa1333090 | AT5G58190.1 | 56.054 | 223 | 90 | 3 | 285 | 503 | 274 | 492 | 1.84e-77 | 256 |
| Msa1333090 | AT3G03950.3 | 56.250 | 224 | 90 | 3 | 281 | 503 | 195 | 411 | 5.72e-76 | 249 |
| Msa1333090 | AT3G03950.2 | 56.250 | 224 | 90 | 3 | 281 | 503 | 191 | 407 | 5.75e-76 | 249 |
| Msa1333090 | AT3G03950.1 | 56.250 | 224 | 90 | 3 | 281 | 503 | 192 | 408 | 7.53e-76 | 249 |
| Msa1333090 | AT1G27960.3 | 53.744 | 227 | 82 | 3 | 280 | 503 | 216 | 422 | 1.91e-75 | 249 |
| Msa1333090 | AT1G27960.1 | 53.744 | 227 | 82 | 3 | 280 | 503 | 290 | 496 | 7.65e-75 | 250 |
| Msa1333090 | AT1G09810.2 | 61.979 | 192 | 73 | 0 | 310 | 501 | 166 | 357 | 2.31e-74 | 245 |
| Msa1333090 | AT1G09810.1 | 62.567 | 187 | 70 | 0 | 315 | 501 | 213 | 399 | 2.53e-74 | 246 |
| Msa1333090 | AT1G09810.3 | 61.979 | 192 | 73 | 0 | 310 | 501 | 189 | 380 | 3.28e-74 | 246 |
| Msa1333090 | AT3G13060.1 | 59.184 | 196 | 76 | 1 | 280 | 475 | 345 | 536 | 2.14e-70 | 238 |
| Msa1333090 | AT3G13460.3 | 55.285 | 123 | 39 | 3 | 281 | 391 | 378 | 496 | 1.52e-30 | 126 |
| Msa1333090 | AT3G13060.5 | 49.107 | 112 | 53 | 1 | 280 | 391 | 345 | 452 | 1.20e-24 | 108 |
| Msa1333090 | AT1G27960.2 | 45.690 | 116 | 40 | 3 | 280 | 392 | 290 | 385 | 1.36e-19 | 92.4 |
| Msa1333090 | AT4G11970.5 | 29.282 | 181 | 100 | 4 | 322 | 485 | 49 | 218 | 2.21e-15 | 79.0 |
| Msa1333090 | AT4G11970.2 | 29.282 | 181 | 100 | 4 | 322 | 485 | 49 | 218 | 2.61e-15 | 78.6 |
| Msa1333090 | AT4G11970.3 | 29.747 | 158 | 95 | 3 | 333 | 485 | 72 | 218 | 3.55e-15 | 78.2 |
| Msa1333090 | AT4G11970.1 | 29.747 | 158 | 95 | 3 | 333 | 485 | 72 | 218 | 1.70e-14 | 76.6 |
| Msa1333090 | AT4G11970.4 | 29.747 | 158 | 95 | 3 | 333 | 485 | 72 | 218 | 1.70e-14 | 76.6 |
Find 185 sgRNAs with CRISPR-Local
Find 359 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATATTTCTAAAATAATTAT+TGG | 0.167608 | 8_4:+53138490 | Msa1333090:three_prime_UTR |
| GTGTCTCGGCTGTTAGTTAC+AGG | 0.207434 | 8_4:-53136940 | None:intergenic |
| TTTATCATGTGCCACTTTAC+AGG | 0.241019 | 8_4:-53136862 | None:intergenic |
| TAGAAGCGGTGATGTATTAT+TGG | 0.272352 | 8_4:+53136301 | Msa1333090:CDS |
| ACCTCATCCTTAAGTCTTGC+TGG | 0.272803 | 8_4:+53137981 | Msa1333090:exon |
| GACTATGGATCTAATGCTAA+TGG | 0.294071 | 8_4:+53136221 | Msa1333090:CDS |
| ATCATAGCACCTGGAATATA+AGG | 0.296402 | 8_4:-53135215 | None:intergenic |
| TTGATAGGCAGATGATGTTT+TGG | 0.299423 | 8_4:-53136356 | None:intergenic |
| TACCCTGCTCCCACCAATTA+CGG | 0.302628 | 8_4:+53134815 | Msa1333090:CDS |
| TGTACAATAAAACCCGTAAT+TGG | 0.304533 | 8_4:-53134828 | None:intergenic |
| TCAATTGGTTCTGTATTAGA+TGG | 0.309724 | 8_4:-53137823 | None:intergenic |
| TTGCCTGCCTGTAGAGATCT+TGG | 0.313418 | 8_4:-53137934 | None:intergenic |
| TTAGCAATTTCATTGTCAAT+AGG | 0.315116 | 8_4:-53136458 | None:intergenic |
| AGAAAAGCTACTGGAAAATC+TGG | 0.315736 | 8_4:+53136599 | Msa1333090:CDS |
| GTATATTACACACCTAACTA+TGG | 0.315879 | 8_4:+53135161 | Msa1333090:CDS |
| ATTGAGATTAGAGGGAGTTC+TGG | 0.326900 | 8_4:-53133900 | None:intergenic |
| AAATGAAGAAATGTAATAAC+TGG | 0.334090 | 8_4:+53138379 | Msa1333090:three_prime_UTR |
| ATCTCCTGACTTTGCTGTAT+AGG | 0.335846 | 8_4:-53136381 | None:intergenic |
| GTTTCGTCTCTACCTGTCTT+GGG | 0.344280 | 8_4:-53137801 | None:intergenic |
| TTTATACTGATCAATATAAC+AGG | 0.344509 | 8_4:+53136426 | Msa1333090:CDS |
| ATTTCTTCTGTTCTGAAGAT+TGG | 0.346895 | 8_4:+53137763 | Msa1333090:CDS |
| GAGCTGCCCCGTTGAGTAAT+GGG | 0.349853 | 8_4:+53136192 | Msa1333090:CDS |
| ACTTCTGGCAGCAAGATAAA+TGG | 0.351298 | 8_4:+53136827 | Msa1333090:CDS |
| CTCTACCTGTCTTGGGGTAA+TGG | 0.360665 | 8_4:-53137794 | None:intergenic |
| TGTTGACTTCAATATGGATA+TGG | 0.361621 | 8_4:+53136804 | Msa1333090:CDS |
| TTATGGTAGTGAATCTTTCT+TGG | 0.362141 | 8_4:+53138423 | Msa1333090:three_prime_UTR |
| TAGCAATTTCATTGTCAATA+GGG | 0.363005 | 8_4:-53136457 | None:intergenic |
| AAGTCTCTTATTGAGATTAG+AGG | 0.363663 | 8_4:-53133909 | None:intergenic |
| GCTTCTGTCAATAGACTTGA+TGG | 0.366272 | 8_4:+53135383 | Msa1333090:CDS |
| TGCATCACAATTGGGAAGTT+GGG | 0.369850 | 8_4:+53138060 | Msa1333090:three_prime_UTR |
| TATTATTGGGTGAACAAAAT+CGG | 0.371689 | 8_4:+53136315 | Msa1333090:CDS |
| TCAATGCAAGTCAGAGTTAA+TGG | 0.373259 | 8_4:+53137862 | Msa1333090:CDS |
| TATATTCCAGGTGCTATGAT+TGG | 0.373959 | 8_4:+53135218 | Msa1333090:CDS |
| TTCACTGACTTTCAGATTGA+AGG | 0.374170 | 8_4:+53134686 | Msa1333090:intron |
| TCAATATGGATATGGACTTC+TGG | 0.377834 | 8_4:+53136812 | Msa1333090:CDS |
| AATATAAGTTGGCGAAGAAA+TGG | 0.379570 | 8_4:-53135300 | None:intergenic |
| TGGTCCTGTTGACTTCAATA+TGG | 0.379915 | 8_4:+53136798 | Msa1333090:CDS |
| CCATACAATCCTTATATTCC+AGG | 0.381940 | 8_4:+53135206 | Msa1333090:CDS |
| ACCCTGCTCCCACCAATTAC+GGG | 0.382161 | 8_4:+53134816 | Msa1333090:CDS |
| TGAATTATTTACCTTTGAAA+AGG | 0.384929 | 8_4:-53133964 | None:intergenic |
| CTCACCGTGTACTGAATATC+AGG | 0.385752 | 8_4:-53135029 | None:intergenic |
| ATTGGAGTTGATGGTTCATT+TGG | 0.388143 | 8_4:+53135236 | Msa1333090:CDS |
| CTCCTTTGAATTGATTATGA+TGG | 0.392180 | 8_4:-53136172 | None:intergenic |
| GCAAAGAAAGATTCGACAAA+TGG | 0.395866 | 8_4:+53135530 | Msa1333090:CDS |
| ATATAAGTTGGCGAAGAAAT+GGG | 0.400966 | 8_4:-53135299 | None:intergenic |
| AAGTTTCTAATGAAGGGTTT+TGG | 0.402265 | 8_4:+53137529 | Msa1333090:CDS |
| GAAAACTAAGTTTCTAATGA+AGG | 0.407105 | 8_4:+53137522 | Msa1333090:CDS |
| CAGAAAACCCATTACTCAAC+GGG | 0.408797 | 8_4:-53136199 | None:intergenic |
| ATGGTTAAAATTCAAAATGT+AGG | 0.410974 | 8_4:-53134736 | None:intergenic |
| TATGGTAGTGAATCTTTCTT+GGG | 0.412358 | 8_4:+53138424 | Msa1333090:three_prime_UTR |
| TTGCATCACAATTGGGAAGT+TGG | 0.413687 | 8_4:+53138059 | Msa1333090:three_prime_UTR |
| GGTTTCGTCTCTACCTGTCT+TGG | 0.414202 | 8_4:-53137802 | None:intergenic |
| ATGCCCGATTGCATCACAAT+TGG | 0.415768 | 8_4:+53138051 | Msa1333090:three_prime_UTR |
| TAAGGATTGTATGGATTGTA+TGG | 0.416713 | 8_4:-53135197 | None:intergenic |
| TGCTTCATCACCTTCCCATC+AGG | 0.416964 | 8_4:+53135583 | Msa1333090:CDS |
| TCGTTAAACATGTCTTTGAA+TGG | 0.418670 | 8_4:-53134755 | None:intergenic |
| AACCCGTAATTGGTGGGAGC+AGG | 0.422335 | 8_4:-53134818 | None:intergenic |
| TCCTTTGAATTGATTATGAT+GGG | 0.425302 | 8_4:-53136171 | None:intergenic |
| CACTACATCTGTGGATGAAA+AGG | 0.427457 | 8_4:+53137711 | Msa1333090:CDS |
| ATCAGACAAGTTCCTTCCTC+AGG | 0.430873 | 8_4:+53135477 | Msa1333090:CDS |
| CCTGGAATATAAGGATTGTA+TGG | 0.432058 | 8_4:-53135206 | None:intergenic |
| CCTCATCCTTAAGTCTTGCT+GGG | 0.432969 | 8_4:+53137982 | Msa1333090:three_prime_UTR |
| TTTGCCAAAGCATTAGCTCT+TGG | 0.434436 | 8_4:-53135512 | None:intergenic |
| GGTGCTATGATTGGAGTTGA+TGG | 0.439110 | 8_4:+53135227 | Msa1333090:CDS |
| ATTATTGGGTGAACAAAATC+GGG | 0.439439 | 8_4:+53136316 | Msa1333090:CDS |
| CTTCCCAATTGTGATGCAAT+CGG | 0.440941 | 8_4:-53138055 | None:intergenic |
| CTGGGAGCAACATGAACCTT+TGG | 0.447906 | 8_4:-53136269 | None:intergenic |
| GACATCCCCAGCAAGACTTA+AGG | 0.448843 | 8_4:-53137988 | None:intergenic |
| CAGCCCTACTTGTCGTGAAT+AGG | 0.450550 | 8_4:-53138523 | None:intergenic |
| GATAATGTATAGAAAGGGTC+TGG | 0.450752 | 8_4:+53137405 | Msa1333090:intron |
| ATGTGCCTAAAATTTCCATT+TGG | 0.458334 | 8_4:-53136892 | None:intergenic |
| GGAGTTGATGGTTCATTTGG+AGG | 0.459454 | 8_4:+53135239 | Msa1333090:CDS |
| AGCATTAGCTCTTGGCCCCT+CGG | 0.460855 | 8_4:-53135504 | None:intergenic |
| GAATTATTTACCTTTGAAAA+GGG | 0.461283 | 8_4:-53133963 | None:intergenic |
| AAGTCTTGCTGGGGATGTCT+AGG | 0.461760 | 8_4:+53137992 | Msa1333090:three_prime_UTR |
| CCGACTGTGACAACATCAAT+TGG | 0.462977 | 8_4:-53137838 | None:intergenic |
| ACCGCTTCTACTTACATCAC+TGG | 0.463464 | 8_4:-53136288 | None:intergenic |
| ATGATAAAAGATGTGCCAAA+TGG | 0.472322 | 8_4:+53136877 | Msa1333090:CDS |
| AAATTAAGAAAACCACTGTT+AGG | 0.473007 | 8_4:-53135560 | None:intergenic |
| ATATCCATATTGAAGTCAAC+AGG | 0.473316 | 8_4:-53136802 | None:intergenic |
| AGAAGCGGTGATGTATTATT+GGG | 0.474099 | 8_4:+53136302 | Msa1333090:CDS |
| GATTTGAATCACCTGGTGAA+TGG | 0.474628 | 8_4:+53134973 | Msa1333090:CDS |
| GACTGTGCAAATCCATAGTT+AGG | 0.475651 | 8_4:-53135173 | None:intergenic |
| ACTATGGATCTAATGCTAAT+GGG | 0.477126 | 8_4:+53136222 | Msa1333090:CDS |
| AAAACATTATTCAGCTTTCG+AGG | 0.481363 | 8_4:-53137574 | None:intergenic |
| TGCCCGATTGCATCACAATT+GGG | 0.483398 | 8_4:+53138052 | Msa1333090:three_prime_UTR |
| CCTCCTGCATGACCTTCTGT+CGG | 0.484140 | 8_4:-53137498 | None:intergenic |
| ATGGGGCAAAACATTTCCAT+TGG | 0.484243 | 8_4:-53136153 | None:intergenic |
| TTAGGTGTGTAATATACATA+AGG | 0.485977 | 8_4:-53135155 | None:intergenic |
| ACCGAAAAGAAAAGAAAGAT+AGG | 0.487885 | 8_4:-53136629 | None:intergenic |
| TGTGCAGATAATGTATAGAA+AGG | 0.489425 | 8_4:+53137399 | Msa1333090:intron |
| ATTTGAATCACCTGGTGAAT+GGG | 0.489938 | 8_4:+53134974 | Msa1333090:CDS |
| TTCCCAATTGTGATGCAATC+GGG | 0.490315 | 8_4:-53138054 | None:intergenic |
| CCCCATCATAATCAATTCAA+AGG | 0.497677 | 8_4:+53136170 | Msa1333090:CDS |
| TTACAGTATTGATCGAAAGA+TGG | 0.498342 | 8_4:+53138020 | Msa1333090:three_prime_UTR |
| AAAACTAAGTTTCTAATGAA+GGG | 0.499233 | 8_4:+53137523 | Msa1333090:CDS |
| TTCATCCACAGATGTAGTGC+TGG | 0.503907 | 8_4:-53137707 | None:intergenic |
| GCTTTCACTTGATTGATACA+AGG | 0.508064 | 8_4:+53138106 | Msa1333090:three_prime_UTR |
| AGAAAGAAATACACAACAAA+GGG | 0.508554 | 8_4:-53138281 | None:intergenic |
| GAACTTGTCTGATTTGATGA+TGG | 0.508845 | 8_4:-53135467 | None:intergenic |
| AAAACCTATACAGCAAAGTC+AGG | 0.510427 | 8_4:+53136377 | Msa1333090:CDS |
| GAACTATGATGAAAATTGTC+TGG | 0.512526 | 8_4:-53135335 | None:intergenic |
| TGTATACCTCTTGTGTGTCT+CGG | 0.513829 | 8_4:-53136954 | None:intergenic |
| GATGCTAGGAGAAAAGCTAC+TGG | 0.514734 | 8_4:+53136590 | Msa1333090:CDS |
| GGGGCCAAGAGCTAATGCTT+TGG | 0.515241 | 8_4:+53135508 | Msa1333090:CDS |
| ACTTGATCCAAGATCTCTAC+AGG | 0.515937 | 8_4:+53137927 | Msa1333090:CDS |
| TTGATACAAGGCTAAACCGT+TGG | 0.517407 | 8_4:+53138118 | Msa1333090:three_prime_UTR |
| GCATTAGCTCTTGGCCCCTC+GGG | 0.520251 | 8_4:-53135503 | None:intergenic |
| TGAACAAGAGGAATATAAGT+TGG | 0.522275 | 8_4:-53135311 | None:intergenic |
| GGAGCTGCCCCGTTGAGTAA+TGG | 0.524236 | 8_4:+53136191 | Msa1333090:CDS |
| GTCAATAGACTTGATGGAAG+AGG | 0.526422 | 8_4:+53135389 | Msa1333090:CDS |
| AGTCTCTTATTGAGATTAGA+GGG | 0.529830 | 8_4:-53133908 | None:intergenic |
| TTTCGAGGTGGCGCCAACAC+TGG | 0.533894 | 8_4:-53137559 | None:intergenic |
| TCCTTCCTCAGGGTACCCGA+GGG | 0.534598 | 8_4:+53135488 | Msa1333090:CDS |
| TTATCATGTGCCACTTTACA+GGG | 0.536336 | 8_4:-53136861 | None:intergenic |
| TTCCTTCCTCAGGGTACCCG+AGG | 0.539305 | 8_4:+53135487 | Msa1333090:CDS |
| ATTGCCTATTCACGACAAGT+AGG | 0.540727 | 8_4:+53138519 | Msa1333090:three_prime_UTR |
| TGGTGGTCCTCCCATTCACC+AGG | 0.542526 | 8_4:-53134984 | None:intergenic |
| GTGCAGATAATGTATAGAAA+GGG | 0.542850 | 8_4:+53137400 | Msa1333090:intron |
| ACCCGTAATTGGTGGGAGCA+GGG | 0.547180 | 8_4:-53134817 | None:intergenic |
| CTCTGATCAACAACAAACTC+AGG | 0.549896 | 8_4:-53134785 | None:intergenic |
| TGTGGAGTTGCTGAGATGGT+TGG | 0.557085 | 8_4:+53136778 | Msa1333090:CDS |
| GGGTAAGCTTATTACCTGAT+GGG | 0.560408 | 8_4:-53135597 | None:intergenic |
| CCCAGTGATGTAAGTAGAAG+CGG | 0.560429 | 8_4:+53136287 | Msa1333090:CDS |
| ACAATAAAACCCGTAATTGG+TGG | 0.560985 | 8_4:-53134825 | None:intergenic |
| TTGCCTATTCACGACAAGTA+GGG | 0.561157 | 8_4:+53138520 | Msa1333090:three_prime_UTR |
| TGTAGAGATCTTGGATCAAG+TGG | 0.562297 | 8_4:-53137925 | None:intergenic |
| TGCAGTTTCTTGTTTCCATG+AGG | 0.563498 | 8_4:-53136554 | None:intergenic |
| AATTTAAAGACAGATGAACT+TGG | 0.563613 | 8_4:+53137625 | Msa1333090:CDS |
| TGGCTAGGATTTGAATCACC+TGG | 0.564541 | 8_4:+53134966 | Msa1333090:intron |
| AAATTGTCTGGTTGAACAAG+AGG | 0.565932 | 8_4:-53135323 | None:intergenic |
| TATAAGTTGGCGAAGAAATG+GGG | 0.569498 | 8_4:-53135298 | None:intergenic |
| GTGTGGTCATCAACACCTCA+TGG | 0.572729 | 8_4:+53136539 | Msa1333090:CDS |
| ATCGGGGCCCTAGAATTAGT+AGG | 0.574334 | 8_4:+53136333 | Msa1333090:CDS |
| GAGACTTCTCTTCACAACAC+TGG | 0.577777 | 8_4:+53133925 | Msa1333090:five_prime_UTR |
| CCGCTTCTACTTACATCACT+GGG | 0.578603 | 8_4:-53136287 | None:intergenic |
| GGAGTTCTGGAACATTCTGA+TGG | 0.578670 | 8_4:-53133887 | None:intergenic |
| CCAATTGATGTTGTCACAGT+CGG | 0.582496 | 8_4:+53137838 | Msa1333090:CDS |
| GTGGGAGCTTCCCTGTAAAG+TGG | 0.586968 | 8_4:+53136851 | Msa1333090:CDS |
| AACTCCACAAAATTGACCGC+TGG | 0.588632 | 8_4:-53136764 | None:intergenic |
| CAACCTCGCGAATTGTTCGC+TGG | 0.589088 | 8_4:-53138208 | None:intergenic |
| AAGCTTATTACCTGATGGGA+AGG | 0.591653 | 8_4:-53135593 | None:intergenic |
| CAATAAAACCCGTAATTGGT+GGG | 0.592162 | 8_4:-53134824 | None:intergenic |
| TACAAGGCTAAACCGTTGGA+TGG | 0.593011 | 8_4:+53138122 | Msa1333090:three_prime_UTR |
| AGTCACCATTACCCCAAGAC+AGG | 0.594914 | 8_4:+53137789 | Msa1333090:CDS |
| GATCCAAGATCTCTACAGGC+AGG | 0.595943 | 8_4:+53137931 | Msa1333090:CDS |
| CCCAGCAAGACTTAAGGATG+AGG | 0.597908 | 8_4:-53137982 | None:intergenic |
| AAACCGACAGAAGGTCATGC+AGG | 0.599786 | 8_4:+53137495 | Msa1333090:CDS |
| AATTGCTAAACTTCGACCAA+AGG | 0.600391 | 8_4:+53136253 | Msa1333090:CDS |
| ACATACTTCAATTTCAAATG+CGG | 0.601687 | 8_4:+53137657 | Msa1333090:CDS |
| CGCTAGAAAGATCCATCCAA+CGG | 0.602011 | 8_4:-53138134 | None:intergenic |
| CAGAAAGAAATACACAACAA+AGG | 0.604969 | 8_4:-53138282 | None:intergenic |
| AGATCTCTACAGGCAGGCAA+AGG | 0.607123 | 8_4:+53137937 | Msa1333090:CDS |
| CTCATCCTTAAGTCTTGCTG+GGG | 0.607421 | 8_4:+53137983 | Msa1333090:three_prime_UTR |
| TAGAAATATTGGAAGTTGCG+AGG | 0.608788 | 8_4:-53138477 | None:intergenic |
| TTTCGTCTCTACCTGTCTTG+GGG | 0.609585 | 8_4:-53137800 | None:intergenic |
| TCAACTCCAATCATAGCACC+TGG | 0.611265 | 8_4:-53135224 | None:intergenic |
| GGCAGCAAGATAAATGGAGT+GGG | 0.612024 | 8_4:+53136833 | Msa1333090:CDS |
| AGAGTGCTTATGAAGATGCT+AGG | 0.613434 | 8_4:+53136576 | Msa1333090:CDS |
| TGAATCACCTGGTGAATGGG+AGG | 0.616103 | 8_4:+53134977 | Msa1333090:CDS |
| TTCAAAGACATGTTTAACGA+AGG | 0.618250 | 8_4:+53134758 | Msa1333090:exon |
| TTACTATGAAAACCGACAGA+AGG | 0.618618 | 8_4:+53137486 | Msa1333090:CDS |
| CCTTTGAATTGATTATGATG+GGG | 0.619417 | 8_4:-53136170 | None:intergenic |
| TGTCACCAGCACTACATCTG+TGG | 0.635296 | 8_4:+53137702 | Msa1333090:CDS |
| TGGCAGCAAGATAAATGGAG+TGG | 0.635971 | 8_4:+53136832 | Msa1333090:CDS |
| TCAGACAAGTTCCTTCCTCA+GGG | 0.638045 | 8_4:+53135478 | Msa1333090:CDS |
| TCAGAAAACCCATTACTCAA+CGG | 0.638768 | 8_4:-53136200 | None:intergenic |
| AATGGAAGTGTTCCTAACAG+TGG | 0.638957 | 8_4:+53135548 | Msa1333090:CDS |
| TCAATGTAGGTTAATGCCAG+CGG | 0.649389 | 8_4:+53136748 | Msa1333090:intron |
| ACATTATTCAGCTTTCGAGG+TGG | 0.659451 | 8_4:-53137571 | None:intergenic |
| AAAGCTACTGGAAAATCTGG+AGG | 0.667052 | 8_4:+53136602 | Msa1333090:CDS |
| TGTTATAAAATCATACAGTG+AGG | 0.670580 | 8_4:+53136487 | Msa1333090:CDS |
| GTAGAGATCTTGGATCAAGT+GGG | 0.673059 | 8_4:-53137924 | None:intergenic |
| TGGTCCTGATATTCAGTACA+CGG | 0.673378 | 8_4:+53135025 | Msa1333090:CDS |
| AAAGCATTAAATATAACGTG+TGG | 0.673580 | 8_4:+53136522 | Msa1333090:CDS |
| TAACAGCCGAGACACACAAG+AGG | 0.680258 | 8_4:+53136948 | Msa1333090:CDS |
| CTGCCAGCGAACAATTCGCG+AGG | 0.682834 | 8_4:+53138205 | Msa1333090:three_prime_UTR |
| CCTTCCTCAGGGTACCCGAG+GGG | 0.684367 | 8_4:+53135489 | Msa1333090:CDS |
| CCGACAGAAGGTCATGCAGG+AGG | 0.689597 | 8_4:+53137498 | Msa1333090:CDS |
| TTATTGGGTGAACAAAATCG+GGG | 0.719539 | 8_4:+53136317 | Msa1333090:CDS |
| TTATACTGATCAATATAACA+GGG | 0.725652 | 8_4:+53136427 | Msa1333090:CDS |
| TACTGATCAATATAACAGGG+AGG | 0.738774 | 8_4:+53136430 | Msa1333090:CDS |
| TCGCTGGCAGACATAATATG+CGG | 0.740365 | 8_4:-53138192 | None:intergenic |
| TGAAAAGGTTGAGAATGATG+CGG | 0.755410 | 8_4:+53137726 | Msa1333090:CDS |
| AGAAAACCCATTACTCAACG+GGG | 0.769685 | 8_4:-53136198 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAACAACAAATAAAATA+GGG | - | chr8_4:53134319-53134338 | None:intergenic | 15.0% |
| !! | AAAACAACAACAAATAAAAT+AGG | - | chr8_4:53134320-53134339 | None:intergenic | 15.0% |
| !!! | GTTGTTGTTTTTTAATTTTT+TGG | + | chr8_4:53134329-53134348 | Msa1333090:intron | 15.0% |
| !!! | TCATTTTATATACCTTTTAA+AGG | + | chr8_4:53137264-53137283 | Msa1333090:intron | 15.0% |
| !! | GAAAATGAAAAATTGAATCT+AGG | - | chr8_4:53133763-53133782 | None:intergenic | 20.0% |
| !!! | CTTTTTCAAAGGTTATAATA+GGG | + | chr8_4:53133819-53133838 | Msa1333090:intron | 20.0% |
| !!! | TTCTCTTGTTTTGATTTTTT+AGG | + | chr8_4:53133850-53133869 | Msa1333090:five_prime_UTR | 20.0% |
| !!! | TCTCTTGTTTTGATTTTTTA+GGG | + | chr8_4:53133851-53133870 | Msa1333090:five_prime_UTR | 20.0% |
| !!! | GAATTATTTACCTTTGAAAA+GGG | - | chr8_4:53133966-53133985 | None:intergenic | 20.0% |
| !!! | TGAATTATTTACCTTTGAAA+AGG | - | chr8_4:53133967-53133986 | None:intergenic | 20.0% |
| !! | AAACAAAAAAAATCTAAGAG+AGG | - | chr8_4:53133992-53134011 | None:intergenic | 20.0% |
| !!! | TATGGATAATATTGTTTTCT+AGG | + | chr8_4:53134064-53134083 | Msa1333090:intron | 20.0% |
| !!! | ATGGATAATATTGTTTTCTA+GGG | + | chr8_4:53134065-53134084 | Msa1333090:intron | 20.0% |
| !! | ATAAGTTGTGTAAAAAAAGT+AGG | - | chr8_4:53134191-53134210 | None:intergenic | 20.0% |
| !! | ACTTATCAATACTATTTAAG+TGG | + | chr8_4:53134205-53134224 | Msa1333090:intron | 20.0% |
| !! | CTTATCAATACTATTTAAGT+GGG | + | chr8_4:53134206-53134225 | Msa1333090:intron | 20.0% |
| !!! | AGGTTTAATTTTTGTTTTCT+TGG | + | chr8_4:53134282-53134301 | Msa1333090:intron | 20.0% |
| !! | AACAACAACAAATAAAATAG+GGG | - | chr8_4:53134318-53134337 | None:intergenic | 20.0% |
| !! | AGATTTAGAGATTAATTAGT+TGG | + | chr8_4:53134542-53134561 | Msa1333090:intron | 20.0% |
| !! | TAATTAGTTGGATAGAAATA+TGG | + | chr8_4:53134554-53134573 | Msa1333090:intron | 20.0% |
| !! | ATGGTTAAAATTCAAAATGT+AGG | - | chr8_4:53134739-53134758 | None:intergenic | 20.0% |
| !!! | TTTTCATAAAAAAAGTACCA+TGG | - | chr8_4:53135897-53135916 | None:intergenic | 20.0% |
| !!! | ATGGTACTTTTTTTATGAAA+AGG | + | chr8_4:53135896-53135915 | Msa1333090:intron | 20.0% |
| !! | TTTATACTGATCAATATAAC+AGG | + | chr8_4:53136426-53136445 | Msa1333090:CDS | 20.0% |
| !! | TTATACTGATCAATATAACA+GGG | + | chr8_4:53136427-53136446 | Msa1333090:CDS | 20.0% |
| !! | AAAACTAAGTTTCTAATGAA+GGG | + | chr8_4:53137523-53137542 | Msa1333090:CDS | 20.0% |
| !! | AAATGAAGAAATGTAATAAC+TGG | + | chr8_4:53138379-53138398 | Msa1333090:three_prime_UTR | 20.0% |
| !! | ATTATAACCTTTGAAAAAGG+CGG | - | chr8_4:53133818-53133837 | None:intergenic | 25.0% |
| !! | CCTATTATAACCTTTGAAAA+AGG | - | chr8_4:53133821-53133840 | None:intergenic | 25.0% |
| !!! | CCTTTTTCAAAGGTTATAAT+AGG | + | chr8_4:53133818-53133837 | Msa1333090:intron | 25.0% |
| !!! | TTTTTTCTTTCCCTTTTCAA+AGG | + | chr8_4:53133953-53133972 | Msa1333090:five_prime_UTR | 25.0% |
| !!! | TCGTTATTTGATTTTGAGAT+TGG | + | chr8_4:53134040-53134059 | Msa1333090:intron | 25.0% |
| !!! | CGTTATTTGATTTTGAGATT+GGG | + | chr8_4:53134041-53134060 | Msa1333090:intron | 25.0% |
| !!! | TAATATTGTTTTCTAGGGTA+AGG | + | chr8_4:53134070-53134089 | Msa1333090:intron | 25.0% |
| ! | AAAAGTAGGAAATTTCAACA+CGG | - | chr8_4:53134177-53134196 | None:intergenic | 25.0% |
| !!! | TTTGGAATTTTCTATTGAGA+TGG | + | chr8_4:53134347-53134366 | Msa1333090:intron | 25.0% |
| ! | TTAGGTGTGTAATATACATA+AGG | - | chr8_4:53135158-53135177 | None:intergenic | 25.0% |
| ! | AAATTAAGAAAACCACTGTT+AGG | - | chr8_4:53135563-53135582 | None:intergenic | 25.0% |
| ! | AATTCCAATATAGCTCAAAA+GGG | - | chr8_4:53135620-53135639 | None:intergenic | 25.0% |
| ! | AAATTCCAATATAGCTCAAA+AGG | - | chr8_4:53135621-53135640 | None:intergenic | 25.0% |
| ! | TAGCAAGTTACTACTATTAT+AGG | + | chr8_4:53135862-53135881 | Msa1333090:intron | 25.0% |
| !!! | TAAAAAAAGTACCATGGAAA+AGG | - | chr8_4:53135891-53135910 | None:intergenic | 25.0% |
| !!! | TTATTAGTTTGTGAACTTTG+TGG | + | chr8_4:53135946-53135965 | Msa1333090:intron | 25.0% |
| ! | TCCTTTGAATTGATTATGAT+GGG | - | chr8_4:53136174-53136193 | None:intergenic | 25.0% |
| ! | TATTATTGGGTGAACAAAAT+CGG | + | chr8_4:53136315-53136334 | Msa1333090:CDS | 25.0% |
| ! | TAGCAATTTCATTGTCAATA+GGG | - | chr8_4:53136460-53136479 | None:intergenic | 25.0% |
| ! | TTAGCAATTTCATTGTCAAT+AGG | - | chr8_4:53136461-53136480 | None:intergenic | 25.0% |
| ! | TGTTATAAAATCATACAGTG+AGG | + | chr8_4:53136487-53136506 | Msa1333090:CDS | 25.0% |
| !! | AAAGCATTAAATATAACGTG+TGG | + | chr8_4:53136522-53136541 | Msa1333090:CDS | 25.0% |
| !! | TCCTATCTTTCTTTTCTTTT+CGG | + | chr8_4:53136628-53136647 | Msa1333090:CDS | 25.0% |
| !!! | TACATAAGTTTTAGAAGTAC+AGG | - | chr8_4:53136680-53136699 | None:intergenic | 25.0% |
| ! | AACCTACATTGAAAAAGAAA+GGG | - | chr8_4:53136740-53136759 | None:intergenic | 25.0% |
| ! | TAACCTACATTGAAAAAGAA+AGG | - | chr8_4:53136741-53136760 | None:intergenic | 25.0% |
| ! | TTAAAATTGATAAGTGTTCC+TGG | + | chr8_4:53137007-53137026 | Msa1333090:intron | 25.0% |
| ! | TAAAATTGATAAGTGTTCCT+GGG | + | chr8_4:53137008-53137027 | Msa1333090:intron | 25.0% |
| ! | ATTGTTCGAATTTGTGAATA+TGG | + | chr8_4:53137097-53137116 | Msa1333090:intron | 25.0% |
| ! | GTCAAAATTATATTAACAGC+AGG | - | chr8_4:53137359-53137378 | None:intergenic | 25.0% |
| ! | GAAAACTAAGTTTCTAATGA+AGG | + | chr8_4:53137522-53137541 | Msa1333090:CDS | 25.0% |
| ! | AATTTAAAGACAGATGAACT+TGG | + | chr8_4:53137625-53137644 | Msa1333090:CDS | 25.0% |
| ! | ACATACTTCAATTTCAAATG+CGG | + | chr8_4:53137657-53137676 | Msa1333090:CDS | 25.0% |
| ! | AGAAAGAAATACACAACAAA+GGG | - | chr8_4:53138284-53138303 | None:intergenic | 25.0% |
| !!! | ATGAATGCGTTTTAAGATTA+TGG | + | chr8_4:53138406-53138425 | Msa1333090:three_prime_UTR | 25.0% |
| AGTCTCTTATTGAGATTAGA+GGG | - | chr8_4:53133911-53133930 | None:intergenic | 30.0% | |
| AAGTCTCTTATTGAGATTAG+AGG | - | chr8_4:53133912-53133931 | None:intergenic | 30.0% | |
| !! | GCTTAGTTATTTTCTCTCTT+AGG | + | chr8_4:53134012-53134031 | Msa1333090:intron | 30.0% |
| !!! | TTTGATTTTGAGATTGGGTA+TGG | + | chr8_4:53134046-53134065 | Msa1333090:intron | 30.0% |
| ATCTTCTCTACTGGAAAAAA+TGG | - | chr8_4:53134418-53134437 | None:intergenic | 30.0% | |
| !!! | ATTTTTTCCAGTAGAGAAGA+TGG | + | chr8_4:53134417-53134436 | Msa1333090:intron | 30.0% |
| TAGAGAAGATGGTAAAAACT+AGG | + | chr8_4:53134428-53134447 | Msa1333090:intron | 30.0% | |
| GCAAATTCTATAGTAAGTAG+AGG | + | chr8_4:53134484-53134503 | Msa1333090:intron | 30.0% | |
| !!! | AGCTTCTCTTACAGTTTTTT+AGG | - | chr8_4:53134514-53134533 | None:intergenic | 30.0% |
| TCGTTAAACATGTCTTTGAA+TGG | - | chr8_4:53134758-53134777 | None:intergenic | 30.0% | |
| TTCAAAGACATGTTTAACGA+AGG | + | chr8_4:53134758-53134777 | Msa1333090:exon | 30.0% | |
| TGTACAATAAAACCCGTAAT+TGG | - | chr8_4:53134831-53134850 | None:intergenic | 30.0% | |
| !!! | AATTACGGGTTTTATTGTAC+AGG | + | chr8_4:53134830-53134849 | Msa1333090:CDS | 30.0% |
| !! | AAAGGTACGGTGATTATTTT+TGG | - | chr8_4:53134861-53134880 | None:intergenic | 30.0% |
| AAAAATAATCACCGTACCTT+TGG | + | chr8_4:53134860-53134879 | Msa1333090:intron | 30.0% | |
| CATCTACACCAAAAATTCTA+TGG | - | chr8_4:53135007-53135026 | None:intergenic | 30.0% | |
| !!! | CATAGAATTTTTGGTGTAGA+TGG | + | chr8_4:53135005-53135024 | Msa1333090:CDS | 30.0% |
| ! | TAAATGCTTCTTTCTTTTCC+AGG | + | chr8_4:53135112-53135131 | Msa1333090:intron | 30.0% |
| ! | AAATGCTTCTTTCTTTTCCA+GGG | + | chr8_4:53135113-53135132 | Msa1333090:intron | 30.0% |
| GTATATTACACACCTAACTA+TGG | + | chr8_4:53135161-53135180 | Msa1333090:CDS | 30.0% | |
| ! | TAAGGATTGTATGGATTGTA+TGG | - | chr8_4:53135200-53135219 | None:intergenic | 30.0% |
| !! | AAATGGGGTTTTGATAATTG+GGG | - | chr8_4:53135286-53135305 | None:intergenic | 30.0% |
| !! | GAAATGGGGTTTTGATAATT+GGG | - | chr8_4:53135287-53135306 | None:intergenic | 30.0% |
| !! | AGAAATGGGGTTTTGATAAT+TGG | - | chr8_4:53135288-53135307 | None:intergenic | 30.0% |
| ! | ATATAAGTTGGCGAAGAAAT+GGG | - | chr8_4:53135302-53135321 | None:intergenic | 30.0% |
| ! | AATATAAGTTGGCGAAGAAA+TGG | - | chr8_4:53135303-53135322 | None:intergenic | 30.0% |
| TGAACAAGAGGAATATAAGT+TGG | - | chr8_4:53135314-53135333 | None:intergenic | 30.0% | |
| GAACTATGATGAAAATTGTC+TGG | - | chr8_4:53135338-53135357 | None:intergenic | 30.0% | |
| GAATAGTGTGTTTATATGGA+AGG | + | chr8_4:53135748-53135767 | Msa1333090:intron | 30.0% | |
| ! | GTGTTTATATGGAAGGATTT+TGG | + | chr8_4:53135755-53135774 | Msa1333090:intron | 30.0% |
| AACATGTCAAAAGCAAAAGT+GGG | - | chr8_4:53135811-53135830 | None:intergenic | 30.0% | |
| AAACATGTCAAAAGCAAAAG+TGG | - | chr8_4:53135812-53135831 | None:intergenic | 30.0% | |
| !! | CTTTTGCTTTTGACATGTTT+AGG | + | chr8_4:53135812-53135831 | Msa1333090:intron | 30.0% |
| ! | TTTTATGAAAAGGACATGCT+TGG | + | chr8_4:53135906-53135925 | Msa1333090:intron | 30.0% |
| ! | AATTGTGTTGTTGTATTTGC+TGG | + | chr8_4:53135999-53136018 | Msa1333090:intron | 30.0% |
| !! | TTTGCTGGCTTGTTTATATA+TGG | + | chr8_4:53136014-53136033 | Msa1333090:intron | 30.0% |
| ! | ATAGCTATATTTTCCTTCTG+TGG | + | chr8_4:53136079-53136098 | Msa1333090:intron | 30.0% |
| !!! | TCTGTAGATACTTTTTCCAA+TGG | + | chr8_4:53136137-53136156 | Msa1333090:CDS | 30.0% |
| CCTTTGAATTGATTATGATG+GGG | - | chr8_4:53136173-53136192 | None:intergenic | 30.0% | |
| CTCCTTTGAATTGATTATGA+TGG | - | chr8_4:53136175-53136194 | None:intergenic | 30.0% | |
| ACTATGGATCTAATGCTAAT+GGG | + | chr8_4:53136222-53136241 | Msa1333090:CDS | 30.0% | |
| ATTATTGGGTGAACAAAATC+GGG | + | chr8_4:53136316-53136335 | Msa1333090:CDS | 30.0% | |
| !! | TTTGCTGTATAGGTTTTGAT+AGG | - | chr8_4:53136374-53136393 | None:intergenic | 30.0% |
| ACCGAAAAGAAAAGAAAGAT+AGG | - | chr8_4:53136632-53136651 | None:intergenic | 30.0% | |
| ATATCCATATTGAAGTCAAC+AGG | - | chr8_4:53136805-53136824 | None:intergenic | 30.0% | |
| !! | TGTTGACTTCAATATGGATA+TGG | + | chr8_4:53136804-53136823 | Msa1333090:CDS | 30.0% |
| ATGATAAAAGATGTGCCAAA+TGG | + | chr8_4:53136877-53136896 | Msa1333090:CDS | 30.0% | |
| ! | ATGTGCCAAATGGAAATTTT+AGG | + | chr8_4:53136887-53136906 | Msa1333090:CDS | 30.0% |
| ATGTGCCTAAAATTTCCATT+TGG | - | chr8_4:53136895-53136914 | None:intergenic | 30.0% | |
| TCAACTAAAAACTTGCATGT+CGG | - | chr8_4:53137045-53137064 | None:intergenic | 30.0% | |
| TACTCAATTGTTTCCTAACA+AGG | - | chr8_4:53137128-53137147 | None:intergenic | 30.0% | |
| TTGTTAGGAAACAATTGAGT+AGG | + | chr8_4:53137127-53137146 | Msa1333090:intron | 30.0% | |
| TTACATCATTGAGACAATCA+AGG | - | chr8_4:53137226-53137245 | None:intergenic | 30.0% | |
| TGTCTCAATGATGTAAATGT+TGG | + | chr8_4:53137230-53137249 | Msa1333090:intron | 30.0% | |
| CATAAGCTGGTAAAAAATGT+GGG | + | chr8_4:53137287-53137306 | Msa1333090:intron | 30.0% | |
| TGTGCAGATAATGTATAGAA+AGG | + | chr8_4:53137399-53137418 | Msa1333090:intron | 30.0% | |
| GTGCAGATAATGTATAGAAA+GGG | + | chr8_4:53137400-53137419 | Msa1333090:intron | 30.0% | |
| ! | AAGTTTCTAATGAAGGGTTT+TGG | + | chr8_4:53137529-53137548 | Msa1333090:CDS | 30.0% |
| AAAACATTATTCAGCTTTCG+AGG | - | chr8_4:53137577-53137596 | None:intergenic | 30.0% | |
| ! | AAATTTTTCTCATCACTTGC+AGG | - | chr8_4:53137610-53137629 | None:intergenic | 30.0% |
| !! | ATTTCTTCTGTTCTGAAGAT+TGG | + | chr8_4:53137763-53137782 | Msa1333090:CDS | 30.0% |
| !! | TCAATTGGTTCTGTATTAGA+TGG | - | chr8_4:53137826-53137845 | None:intergenic | 30.0% |
| !! | TTACAGTATTGATCGAAAGA+TGG | + | chr8_4:53138020-53138039 | Msa1333090:three_prime_UTR | 30.0% |
| CAGAAAGAAATACACAACAA+AGG | - | chr8_4:53138285-53138304 | None:intergenic | 30.0% | |
| ! | TTATGGTAGTGAATCTTTCT+TGG | + | chr8_4:53138423-53138442 | Msa1333090:three_prime_UTR | 30.0% |
| ! | TATGGTAGTGAATCTTTCTT+GGG | + | chr8_4:53138424-53138443 | Msa1333090:three_prime_UTR | 30.0% |
| !!! | TGTTTTCTAGGGTAAGGAAA+AGG | + | chr8_4:53134076-53134095 | Msa1333090:intron | 35.0% |
| !!! | GTTTTCTAGGGTAAGGAAAA+GGG | + | chr8_4:53134077-53134096 | Msa1333090:intron | 35.0% |
| !!! | TTTTCTAGGGTAAGGAAAAG+GGG | + | chr8_4:53134078-53134097 | Msa1333090:intron | 35.0% |
| !! | AAAGGGGGATTTTGTTTATG+CGG | + | chr8_4:53134094-53134113 | Msa1333090:intron | 35.0% |
| !! | CACGGTTTGACTTTGAAATA+GGG | - | chr8_4:53134159-53134178 | None:intergenic | 35.0% |
| !! | ACACGGTTTGACTTTGAAAT+AGG | - | chr8_4:53134160-53134179 | None:intergenic | 35.0% |
| TATGCTTCACAGTATCTATC+TGG | - | chr8_4:53134252-53134271 | None:intergenic | 35.0% | |
| ! | GTTTTTACCATCTTCTCTAC+TGG | - | chr8_4:53134427-53134446 | None:intergenic | 35.0% |
| AAAACTAGGTTTGCGTGATT+TGG | + | chr8_4:53134442-53134461 | Msa1333090:intron | 35.0% | |
| AAACTAGGTTTGCGTGATTT+GGG | + | chr8_4:53134443-53134462 | Msa1333090:intron | 35.0% | |
| !! | TTCACTGACTTTCAGATTGA+AGG | + | chr8_4:53134686-53134705 | Msa1333090:intron | 35.0% |
| CAATAAAACCCGTAATTGGT+GGG | - | chr8_4:53134827-53134846 | None:intergenic | 35.0% | |
| ACAATAAAACCCGTAATTGG+TGG | - | chr8_4:53134828-53134847 | None:intergenic | 35.0% | |
| GTACACGATATATGATCAAC+CGG | - | chr8_4:53134900-53134919 | None:intergenic | 35.0% | |
| !!! | TGACCACTTGGTATTTTTTG+TGG | + | chr8_4:53134946-53134965 | Msa1333090:intron | 35.0% |
| TAGCCACAAAAAATACCAAG+TGG | - | chr8_4:53134952-53134971 | None:intergenic | 35.0% | |
| !!! | ACTTGGTATTTTTTGTGGCT+AGG | + | chr8_4:53134951-53134970 | Msa1333090:intron | 35.0% |
| ATTTGAATCACCTGGTGAAT+GGG | + | chr8_4:53134974-53134993 | Msa1333090:CDS | 35.0% | |
| CTACACCAAAAATTCTATGG+TGG | - | chr8_4:53135004-53135023 | None:intergenic | 35.0% | |
| TATGACACACAAGACACATA+CGG | - | chr8_4:53135072-53135091 | None:intergenic | 35.0% | |
| TGTCTTGTGTGTCATATGTT+GGG | + | chr8_4:53135076-53135095 | Msa1333090:intron | 35.0% | |
| ! | GAAGCATTTAAATCAGCTGT+CGG | - | chr8_4:53135102-53135121 | None:intergenic | 35.0% |
| CCTGGAATATAAGGATTGTA+TGG | - | chr8_4:53135209-53135228 | None:intergenic | 35.0% | |
| CCATACAATCCTTATATTCC+AGG | + | chr8_4:53135206-53135225 | Msa1333090:CDS | 35.0% | |
| ATCATAGCACCTGGAATATA+AGG | - | chr8_4:53135218-53135237 | None:intergenic | 35.0% | |
| ! | TATATTCCAGGTGCTATGAT+TGG | + | chr8_4:53135218-53135237 | Msa1333090:CDS | 35.0% |
| !! | ATTGGAGTTGATGGTTCATT+TGG | + | chr8_4:53135236-53135255 | Msa1333090:CDS | 35.0% |
| ! | TATAAGTTGGCGAAGAAATG+GGG | - | chr8_4:53135301-53135320 | None:intergenic | 35.0% |
| AAATTGTCTGGTTGAACAAG+AGG | - | chr8_4:53135326-53135345 | None:intergenic | 35.0% | |
| ! | GAACTTGTCTGATTTGATGA+TGG | - | chr8_4:53135470-53135489 | None:intergenic | 35.0% |
| GCAAAGAAAGATTCGACAAA+TGG | + | chr8_4:53135530-53135549 | Msa1333090:CDS | 35.0% | |
| ! | CTTACCCTTTTGAGCTATAT+TGG | + | chr8_4:53135613-53135632 | Msa1333090:intron | 35.0% |
| GCTGGAATAGTGTGTTTATA+TGG | + | chr8_4:53135744-53135763 | Msa1333090:intron | 35.0% | |
| ! | AAAGTGTTATCAATGGCAGA+AGG | - | chr8_4:53135781-53135800 | None:intergenic | 35.0% |
| ! | GCTTGACAAAGTGTTATCAA+TGG | - | chr8_4:53135788-53135807 | None:intergenic | 35.0% |
| ACATGTCAAAAGCAAAAGTG+GGG | - | chr8_4:53135810-53135829 | None:intergenic | 35.0% | |
| ! | ATTATAGGTCACCTTTTCCA+TGG | + | chr8_4:53135877-53135896 | Msa1333090:intron | 35.0% |
| ! | TTTTCCTTCTGTGGTATTGT+AGG | + | chr8_4:53136088-53136107 | Msa1333090:intron | 35.0% |
| !! | TGGAAAAAGTATCTACAGAC+TGG | - | chr8_4:53136136-53136155 | None:intergenic | 35.0% |
| CCCCATCATAATCAATTCAA+AGG | + | chr8_4:53136170-53136189 | Msa1333090:CDS | 35.0% | |
| TCAGAAAACCCATTACTCAA+CGG | - | chr8_4:53136203-53136222 | None:intergenic | 35.0% | |
| !!! | AGTAATGGGTTTTCTGACTA+TGG | + | chr8_4:53136206-53136225 | Msa1333090:CDS | 35.0% |
| GACTATGGATCTAATGCTAA+TGG | + | chr8_4:53136221-53136240 | Msa1333090:CDS | 35.0% | |
| AATTGCTAAACTTCGACCAA+AGG | + | chr8_4:53136253-53136272 | Msa1333090:CDS | 35.0% | |
| TAGAAGCGGTGATGTATTAT+TGG | + | chr8_4:53136301-53136320 | Msa1333090:CDS | 35.0% | |
| AGAAGCGGTGATGTATTATT+GGG | + | chr8_4:53136302-53136321 | Msa1333090:CDS | 35.0% | |
| TTATTGGGTGAACAAAATCG+GGG | + | chr8_4:53136317-53136336 | Msa1333090:CDS | 35.0% | |
| !! | GTTTTGGCCTACTAATTCTA+GGG | - | chr8_4:53136343-53136362 | None:intergenic | 35.0% |
| !!! | TGTTTTGGCCTACTAATTCT+AGG | - | chr8_4:53136344-53136363 | None:intergenic | 35.0% |
| ! | TTGATAGGCAGATGATGTTT+TGG | - | chr8_4:53136359-53136378 | None:intergenic | 35.0% |
| AAAACCTATACAGCAAAGTC+AGG | + | chr8_4:53136377-53136396 | Msa1333090:CDS | 35.0% | |
| TACTGATCAATATAACAGGG+AGG | + | chr8_4:53136430-53136449 | Msa1333090:CDS | 35.0% | |
| AGAAAAGCTACTGGAAAATC+TGG | + | chr8_4:53136599-53136618 | Msa1333090:CDS | 35.0% | |
| !!! | GACCCTTTCTTTTTCAATGT+AGG | + | chr8_4:53136735-53136754 | Msa1333090:intron | 35.0% |
| TCAATATGGATATGGACTTC+TGG | + | chr8_4:53136812-53136831 | Msa1333090:CDS | 35.0% | |
| !! | TTATCATGTGCCACTTTACA+GGG | - | chr8_4:53136864-53136883 | None:intergenic | 35.0% |
| !! | TTTATCATGTGCCACTTTAC+AGG | - | chr8_4:53136865-53136884 | None:intergenic | 35.0% |
| AATTATGTGTGCATGCGATT+AGG | - | chr8_4:53137167-53137186 | None:intergenic | 35.0% | |
| !! | TACCTTTTAAAGGCATAAGC+TGG | + | chr8_4:53137274-53137293 | Msa1333090:intron | 35.0% |
| TACCAGCTTATGCCTTTAAA+AGG | - | chr8_4:53137279-53137298 | None:intergenic | 35.0% | |
| GCATAAGCTGGTAAAAAATG+TGG | + | chr8_4:53137286-53137305 | Msa1333090:intron | 35.0% | |
| ATTATCTGCACATGAGGAAT+GGG | - | chr8_4:53137391-53137410 | None:intergenic | 35.0% | |
| CTATACATTATCTGCACATG+AGG | - | chr8_4:53137397-53137416 | None:intergenic | 35.0% | |
| GATAATGTATAGAAAGGGTC+TGG | + | chr8_4:53137405-53137424 | Msa1333090:intron | 35.0% | |
| TTACTATGAAAACCGACAGA+AGG | + | chr8_4:53137486-53137505 | Msa1333090:CDS | 35.0% | |
| !! | TTTTGGAAGTATACCAGTGT+TGG | + | chr8_4:53137546-53137565 | Msa1333090:CDS | 35.0% |
| TGAAAAGGTTGAGAATGATG+CGG | + | chr8_4:53137726-53137745 | Msa1333090:CDS | 35.0% | |
| TCAATGCAAGTCAGAGTTAA+TGG | + | chr8_4:53137862-53137881 | Msa1333090:CDS | 35.0% | |
| !! | AATGGATTTTCTGAGTCTTC+TGG | + | chr8_4:53137880-53137899 | Msa1333090:CDS | 35.0% |
| !! | TGAGTCTTCTGGTGTTTTAA+AGG | + | chr8_4:53137891-53137910 | Msa1333090:CDS | 35.0% |
| !!! | TCTTCTGGTGTTTTAAAGGT+TGG | + | chr8_4:53137895-53137914 | Msa1333090:CDS | 35.0% |
| !!! | CTTCTGGTGTTTTAAAGGTT+GGG | + | chr8_4:53137896-53137915 | Msa1333090:CDS | 35.0% |
| !! | AGGTCAAGTTTTGATGTAAG+TGG | - | chr8_4:53137965-53137984 | None:intergenic | 35.0% |
| GCTTTCACTTGATTGATACA+AGG | + | chr8_4:53138106-53138125 | Msa1333090:three_prime_UTR | 35.0% | |
| TAGAAATATTGGAAGTTGCG+AGG | - | chr8_4:53138480-53138499 | None:intergenic | 35.0% | |
| ! | ACCTTTGAAAAAGGCGGTTT+CGG | - | chr8_4:53133812-53133831 | None:intergenic | 40.0% |
| ATTGAGATTAGAGGGAGTTC+TGG | - | chr8_4:53133903-53133922 | None:intergenic | 40.0% | |
| !! | TTTCTAGGGTAAGGAAAAGG+GGG | + | chr8_4:53134079-53134098 | Msa1333090:intron | 40.0% |
| CTACTGGAAAAAATGGCGTT+AGG | - | chr8_4:53134411-53134430 | None:intergenic | 40.0% | |
| AGATGACATGAAAGTGACCT+AGG | - | chr8_4:53134632-53134651 | None:intergenic | 40.0% | |
| CTCTGATCAACAACAAACTC+AGG | - | chr8_4:53134788-53134807 | None:intergenic | 40.0% | |
| ! | TATGCACTGTATTGACCACT+TGG | + | chr8_4:53134934-53134953 | Msa1333090:intron | 40.0% |
| GATTTGAATCACCTGGTGAA+TGG | + | chr8_4:53134973-53134992 | Msa1333090:CDS | 40.0% | |
| ! | GAGGACCACCATAGAATTTT+TGG | + | chr8_4:53134996-53135015 | Msa1333090:CDS | 40.0% |
| TGGTCCTGATATTCAGTACA+CGG | + | chr8_4:53135025-53135044 | Msa1333090:CDS | 40.0% | |
| ATGACACACAAGACACATAC+GGG | - | chr8_4:53135071-53135090 | None:intergenic | 40.0% | |
| GTGTCTTGTGTGTCATATGT+TGG | + | chr8_4:53135075-53135094 | Msa1333090:intron | 40.0% | |
| GACTGTGCAAATCCATAGTT+AGG | - | chr8_4:53135176-53135195 | None:intergenic | 40.0% | |
| GCTTCTGTCAATAGACTTGA+TGG | + | chr8_4:53135383-53135402 | Msa1333090:CDS | 40.0% | |
| GTCAATAGACTTGATGGAAG+AGG | + | chr8_4:53135389-53135408 | Msa1333090:CDS | 40.0% | |
| ! | TTTGCCAAAGCATTAGCTCT+TGG | - | chr8_4:53135515-53135534 | None:intergenic | 40.0% |
| !! | AATGGAAGTGTTCCTAACAG+TGG | + | chr8_4:53135548-53135567 | Msa1333090:CDS | 40.0% |
| AAGCTTATTACCTGATGGGA+AGG | - | chr8_4:53135596-53135615 | None:intergenic | 40.0% | |
| GGGTAAGCTTATTACCTGAT+GGG | - | chr8_4:53135600-53135619 | None:intergenic | 40.0% | |
| AGGGTAAGCTTATTACCTGA+TGG | - | chr8_4:53135601-53135620 | None:intergenic | 40.0% | |
| ! | CTCTTTTGACAAACTGCGTT+TGG | - | chr8_4:53135696-53135715 | None:intergenic | 40.0% |
| CAAACGCAGTTTGTCAAAAG+AGG | + | chr8_4:53135694-53135713 | Msa1333090:intron | 40.0% | |
| AAACACACTATTCCAGCCTA+TGG | - | chr8_4:53135741-53135760 | None:intergenic | 40.0% | |
| TATGAAAAGGACATGCTTGG+AGG | + | chr8_4:53135909-53135928 | Msa1333090:intron | 40.0% | |
| ATGAAAAGGACATGCTTGGA+GGG | + | chr8_4:53135910-53135929 | Msa1333090:intron | 40.0% | |
| ATGGGGCAAAACATTTCCAT+TGG | - | chr8_4:53136156-53136175 | None:intergenic | 40.0% | |
| AGAAAACCCATTACTCAACG+GGG | - | chr8_4:53136201-53136220 | None:intergenic | 40.0% | |
| CAGAAAACCCATTACTCAAC+GGG | - | chr8_4:53136202-53136221 | None:intergenic | 40.0% | |
| ! | ATCTCCTGACTTTGCTGTAT+AGG | - | chr8_4:53136384-53136403 | None:intergenic | 40.0% |
| ! | TGCAGTTTCTTGTTTCCATG+AGG | - | chr8_4:53136557-53136576 | None:intergenic | 40.0% |
| ! | AGAGTGCTTATGAAGATGCT+AGG | + | chr8_4:53136576-53136595 | Msa1333090:CDS | 40.0% |
| AAAGCTACTGGAAAATCTGG+AGG | + | chr8_4:53136602-53136621 | Msa1333090:CDS | 40.0% | |
| CAGTATGACTAATCGAAGGA+AGG | - | chr8_4:53136716-53136735 | None:intergenic | 40.0% | |
| TCAATGTAGGTTAATGCCAG+CGG | + | chr8_4:53136748-53136767 | Msa1333090:intron | 40.0% | |
| ! | ATTTTGTGGAGTTGCTGAGA+TGG | + | chr8_4:53136774-53136793 | Msa1333090:CDS | 40.0% |
| !! | TGGTCCTGTTGACTTCAATA+TGG | + | chr8_4:53136798-53136817 | Msa1333090:CDS | 40.0% |
| ACTTCTGGCAGCAAGATAAA+TGG | + | chr8_4:53136827-53136846 | Msa1333090:CDS | 40.0% | |
| TGTATACCTCTTGTGTGTCT+CGG | - | chr8_4:53136957-53136976 | None:intergenic | 40.0% | |
| !! | GAATATGGTGTTGCCTTGTT+AGG | + | chr8_4:53137112-53137131 | Msa1333090:intron | 40.0% |
| !! | AATGTGGGTTCATCGACTTT+AGG | + | chr8_4:53137302-53137321 | Msa1333090:intron | 40.0% |
| CATGAGGAATGGGTATTTGA+TGG | - | chr8_4:53137381-53137400 | None:intergenic | 40.0% | |
| CATTATCTGCACATGAGGAA+TGG | - | chr8_4:53137392-53137411 | None:intergenic | 40.0% | |
| ACATTATTCAGCTTTCGAGG+TGG | - | chr8_4:53137574-53137593 | None:intergenic | 40.0% | |
| CACTACATCTGTGGATGAAA+AGG | + | chr8_4:53137711-53137730 | Msa1333090:CDS | 40.0% | |
| CCAATTGATGTTGTCACAGT+CGG | + | chr8_4:53137838-53137857 | Msa1333090:CDS | 40.0% | |
| GTAGAGATCTTGGATCAAGT+GGG | - | chr8_4:53137927-53137946 | None:intergenic | 40.0% | |
| TGTAGAGATCTTGGATCAAG+TGG | - | chr8_4:53137928-53137947 | None:intergenic | 40.0% | |
| ACTTGATCCAAGATCTCTAC+AGG | + | chr8_4:53137927-53137946 | Msa1333090:CDS | 40.0% | |
| TTCCCAATTGTGATGCAATC+GGG | - | chr8_4:53138057-53138076 | None:intergenic | 40.0% | |
| CTTCCCAATTGTGATGCAAT+CGG | - | chr8_4:53138058-53138077 | None:intergenic | 40.0% | |
| TTGCATCACAATTGGGAAGT+TGG | + | chr8_4:53138059-53138078 | Msa1333090:three_prime_UTR | 40.0% | |
| TGCATCACAATTGGGAAGTT+GGG | + | chr8_4:53138060-53138079 | Msa1333090:three_prime_UTR | 40.0% | |
| TTGATACAAGGCTAAACCGT+TGG | + | chr8_4:53138118-53138137 | Msa1333090:three_prime_UTR | 40.0% | |
| !!! | ACCGAAACCGCCTTTTTCAA+AGG | + | chr8_4:53133808-53133827 | Msa1333090:intron | 45.0% |
| !! | GGAGTTCTGGAACATTCTGA+TGG | - | chr8_4:53133890-53133909 | None:intergenic | 45.0% |
| GAGACTTCTCTTCACAACAC+TGG | + | chr8_4:53133925-53133944 | Msa1333090:five_prime_UTR | 45.0% | |
| ATGGCGTTAGGTGGAAATGA+TGG | - | chr8_4:53134399-53134418 | None:intergenic | 45.0% | |
| CTGGAAAAAATGGCGTTAGG+TGG | - | chr8_4:53134408-53134427 | None:intergenic | 45.0% | |
| GATTTGGGCTTGTAGAGAGA+AGG | + | chr8_4:53134458-53134477 | Msa1333090:intron | 45.0% | |
| AATCACCGTACCTTTGGCAT+TGG | + | chr8_4:53134866-53134885 | Msa1333090:intron | 45.0% | |
| ATCACCGTACCTTTGGCATT+GGG | + | chr8_4:53134867-53134886 | Msa1333090:intron | 45.0% | |
| ! | TTTGGCATTGGGGTTGAATC+CGG | + | chr8_4:53134878-53134897 | Msa1333090:intron | 45.0% |
| TGGCTAGGATTTGAATCACC+TGG | + | chr8_4:53134966-53134985 | Msa1333090:intron | 45.0% | |
| CTCACCGTGTACTGAATATC+AGG | - | chr8_4:53135032-53135051 | None:intergenic | 45.0% | |
| AACTTTCATCTTGTGCACCC+TGG | - | chr8_4:53135133-53135152 | None:intergenic | 45.0% | |
| TCAACTCCAATCATAGCACC+TGG | - | chr8_4:53135227-53135246 | None:intergenic | 45.0% | |
| ! | GGTGCTATGATTGGAGTTGA+TGG | + | chr8_4:53135227-53135246 | Msa1333090:CDS | 45.0% |
| !! | GGAGTTGATGGTTCATTTGG+AGG | + | chr8_4:53135239-53135258 | Msa1333090:CDS | 45.0% |
| !! | GGGGTTTTGATAATTGGGGA+GGG | - | chr8_4:53135282-53135301 | None:intergenic | 45.0% |
| !! | TGGGGTTTTGATAATTGGGG+AGG | - | chr8_4:53135283-53135302 | None:intergenic | 45.0% |
| !!! | CAGCTTCTGCTGCTTTTACT+AGG | + | chr8_4:53135432-53135451 | Msa1333090:CDS | 45.0% |
| ATCAGACAAGTTCCTTCCTC+AGG | + | chr8_4:53135477-53135496 | Msa1333090:CDS | 45.0% | |
| TCAGACAAGTTCCTTCCTCA+GGG | + | chr8_4:53135478-53135497 | Msa1333090:CDS | 45.0% | |
| ACTATTCCAGCCTATGGCTA+TGG | - | chr8_4:53135735-53135754 | None:intergenic | 45.0% | |
| CTAGCCTACAATACCACAGA+AGG | - | chr8_4:53136095-53136114 | None:intergenic | 45.0% | |
| CCGCTTCTACTTACATCACT+GGG | - | chr8_4:53136290-53136309 | None:intergenic | 45.0% | |
| CCCAGTGATGTAAGTAGAAG+CGG | + | chr8_4:53136287-53136306 | Msa1333090:CDS | 45.0% | |
| ACCGCTTCTACTTACATCAC+TGG | - | chr8_4:53136291-53136310 | None:intergenic | 45.0% | |
| GATGCTAGGAGAAAAGCTAC+TGG | + | chr8_4:53136590-53136609 | Msa1333090:CDS | 45.0% | |
| GGGTCAGTATGACTAATCGA+AGG | - | chr8_4:53136720-53136739 | None:intergenic | 45.0% | |
| ! | AATGCCAGCGGTCAATTTTG+TGG | + | chr8_4:53136760-53136779 | Msa1333090:CDS | 45.0% |
| AACTCCACAAAATTGACCGC+TGG | - | chr8_4:53136767-53136786 | None:intergenic | 45.0% | |
| TGGCAGCAAGATAAATGGAG+TGG | + | chr8_4:53136832-53136851 | Msa1333090:CDS | 45.0% | |
| GGCAGCAAGATAAATGGAGT+GGG | + | chr8_4:53136833-53136852 | Msa1333090:CDS | 45.0% | |
| ! | TGTCGGTTATAAATGCTCCC+AGG | - | chr8_4:53137028-53137047 | None:intergenic | 45.0% |
| !! | TGGGTTCATCGACTTTAGGA+GGG | + | chr8_4:53137306-53137325 | Msa1333090:intron | 45.0% |
| TTCATCCACAGATGTAGTGC+TGG | - | chr8_4:53137710-53137729 | None:intergenic | 45.0% | |
| TTTCGTCTCTACCTGTCTTG+GGG | - | chr8_4:53137803-53137822 | None:intergenic | 45.0% | |
| GTTTCGTCTCTACCTGTCTT+GGG | - | chr8_4:53137804-53137823 | None:intergenic | 45.0% | |
| CCGACTGTGACAACATCAAT+TGG | - | chr8_4:53137841-53137860 | None:intergenic | 45.0% | |
| ACCTCATCCTTAAGTCTTGC+TGG | + | chr8_4:53137981-53138000 | Msa1333090:exon | 45.0% | |
| CCTCATCCTTAAGTCTTGCT+GGG | + | chr8_4:53137982-53138001 | Msa1333090:three_prime_UTR | 45.0% | |
| CTCATCCTTAAGTCTTGCTG+GGG | + | chr8_4:53137983-53138002 | Msa1333090:three_prime_UTR | 45.0% | |
| ATGCCCGATTGCATCACAAT+TGG | + | chr8_4:53138051-53138070 | Msa1333090:three_prime_UTR | 45.0% | |
| TGCCCGATTGCATCACAATT+GGG | + | chr8_4:53138052-53138071 | Msa1333090:three_prime_UTR | 45.0% | |
| TACAAGGCTAAACCGTTGGA+TGG | + | chr8_4:53138122-53138141 | Msa1333090:three_prime_UTR | 45.0% | |
| CGCTAGAAAGATCCATCCAA+CGG | - | chr8_4:53138137-53138156 | None:intergenic | 45.0% | |
| TCGCTGGCAGACATAATATG+CGG | - | chr8_4:53138195-53138214 | None:intergenic | 45.0% | |
| !!! | AATAATTATTTTAGAAATAT+TGG | - | chr8_4:53138491-53138510 | None:intergenic | 5.0% |
| !!! | AATATTTCTAAAATAATTAT+TGG | + | chr8_4:53138490-53138509 | Msa1333090:three_prime_UTR | 5.0% |
| !! | GGGGGATTTTGTTTATGCGG+TGG | + | chr8_4:53134097-53134116 | Msa1333090:intron | 50.0% |
| GTGAAGCATAGCGTGTGCAT+AGG | + | chr8_4:53134262-53134281 | Msa1333090:intron | 50.0% | |
| GATTGTCTGCAGTGTAGCCT+AGG | + | chr8_4:53134612-53134631 | Msa1333090:intron | 50.0% | |
| TACCCTGCTCCCACCAATTA+CGG | + | chr8_4:53134815-53134834 | Msa1333090:CDS | 50.0% | |
| TCACCGTACCTTTGGCATTG+GGG | + | chr8_4:53134868-53134887 | Msa1333090:intron | 50.0% | |
| CAACCCCAATGCCAAAGGTA+CGG | - | chr8_4:53134874-53134893 | None:intergenic | 50.0% | |
| GGATTCAACCCCAATGCCAA+AGG | - | chr8_4:53134879-53134898 | None:intergenic | 50.0% | |
| TGAATCACCTGGTGAATGGG+AGG | + | chr8_4:53134977-53134996 | Msa1333090:CDS | 50.0% | |
| TGCTTCATCACCTTCCCATC+AGG | + | chr8_4:53135583-53135602 | Msa1333090:CDS | 50.0% | |
| TGAGCATGTCAAGTCAGTGC+TGG | + | chr8_4:53135646-53135665 | Msa1333090:intron | 50.0% | |
| GACAAACTGCGTTTGGCAGA+TGG | - | chr8_4:53135689-53135708 | None:intergenic | 50.0% | |
| TTGTCAAAAGAGGCCTGTCG+TGG | + | chr8_4:53135704-53135723 | Msa1333090:intron | 50.0% | |
| CTGGGAGCAACATGAACCTT+TGG | - | chr8_4:53136272-53136291 | None:intergenic | 50.0% | |
| ATCGGGGCCCTAGAATTAGT+AGG | + | chr8_4:53136333-53136352 | Msa1333090:CDS | 50.0% | |
| GTGTGGTCATCAACACCTCA+TGG | + | chr8_4:53136539-53136558 | Msa1333090:CDS | 50.0% | |
| TGTGGAGTTGCTGAGATGGT+TGG | + | chr8_4:53136778-53136797 | Msa1333090:CDS | 50.0% | |
| GTGTCTCGGCTGTTAGTTAC+AGG | - | chr8_4:53136943-53136962 | None:intergenic | 50.0% | |
| TAACAGCCGAGACACACAAG+AGG | + | chr8_4:53136948-53136967 | Msa1333090:CDS | 50.0% | |
| !! | GTGGGTTCATCGACTTTAGG+AGG | + | chr8_4:53137305-53137324 | Msa1333090:intron | 50.0% |
| ! | CTTTAGGAGGGTCTTCAGCT+TGG | + | chr8_4:53137318-53137337 | Msa1333090:intron | 50.0% |
| AAACCGACAGAAGGTCATGC+AGG | + | chr8_4:53137495-53137514 | Msa1333090:CDS | 50.0% | |
| TGTCACCAGCACTACATCTG+TGG | + | chr8_4:53137702-53137721 | Msa1333090:CDS | 50.0% | |
| AGTCACCATTACCCCAAGAC+AGG | + | chr8_4:53137789-53137808 | Msa1333090:CDS | 50.0% | |
| CTCTACCTGTCTTGGGGTAA+TGG | - | chr8_4:53137797-53137816 | None:intergenic | 50.0% | |
| GGTTTCGTCTCTACCTGTCT+TGG | - | chr8_4:53137805-53137824 | None:intergenic | 50.0% | |
| GATCCAAGATCTCTACAGGC+AGG | + | chr8_4:53137931-53137950 | Msa1333090:CDS | 50.0% | |
| TTGCCTGCCTGTAGAGATCT+TGG | - | chr8_4:53137937-53137956 | None:intergenic | 50.0% | |
| AGATCTCTACAGGCAGGCAA+AGG | + | chr8_4:53137937-53137956 | Msa1333090:CDS | 50.0% | |
| CCCAGCAAGACTTAAGGATG+AGG | - | chr8_4:53137985-53138004 | None:intergenic | 50.0% | |
| GACATCCCCAGCAAGACTTA+AGG | - | chr8_4:53137991-53138010 | None:intergenic | 50.0% | |
| AAGTCTTGCTGGGGATGTCT+AGG | + | chr8_4:53137992-53138011 | Msa1333090:three_prime_UTR | 50.0% | |
| ACCCTGCTCCCACCAATTAC+GGG | + | chr8_4:53134816-53134835 | Msa1333090:CDS | 55.0% | |
| ACCCGTAATTGGTGGGAGCA+GGG | - | chr8_4:53134820-53134839 | None:intergenic | 55.0% | |
| AACCCGTAATTGGTGGGAGC+AGG | - | chr8_4:53134821-53134840 | None:intergenic | 55.0% | |
| CAAGACACATACGGGCAGAG+AGG | - | chr8_4:53135063-53135082 | None:intergenic | 55.0% | |
| ! | AGCATTAGCTCTTGGCCCCT+CGG | - | chr8_4:53135507-53135526 | None:intergenic | 55.0% |
| GGGGCCAAGAGCTAATGCTT+TGG | + | chr8_4:53135508-53135527 | Msa1333090:CDS | 55.0% | |
| !! | ATGTCAAGTCAGTGCTGGCG+TGG | + | chr8_4:53135651-53135670 | Msa1333090:intron | 55.0% |
| GAGCTGCCCCGTTGAGTAAT+GGG | + | chr8_4:53136192-53136211 | Msa1333090:CDS | 55.0% | |
| GTGGGAGCTTCCCTGTAAAG+TGG | + | chr8_4:53136851-53136870 | Msa1333090:CDS | 55.0% | |
| CCTCCTGCATGACCTTCTGT+CGG | - | chr8_4:53137501-53137520 | None:intergenic | 55.0% | |
| CAACCTCGCGAATTGTTCGC+TGG | - | chr8_4:53138211-53138230 | None:intergenic | 55.0% | |
| TGGTGGTCCTCCCATTCACC+AGG | - | chr8_4:53134987-53135006 | None:intergenic | 60.0% | |
| ! | TTCCTTCCTCAGGGTACCCG+AGG | + | chr8_4:53135487-53135506 | Msa1333090:CDS | 60.0% |
| ! | TCCTTCCTCAGGGTACCCGA+GGG | + | chr8_4:53135488-53135507 | Msa1333090:CDS | 60.0% |
| ! | GCATTAGCTCTTGGCCCCTC+GGG | - | chr8_4:53135506-53135525 | None:intergenic | 60.0% |
| CGTGGCAGTGCCATAGCCAT+AGG | + | chr8_4:53135722-53135741 | Msa1333090:intron | 60.0% | |
| GCAGTGCCATAGCCATAGGC+TGG | + | chr8_4:53135726-53135745 | Msa1333090:intron | 60.0% | |
| GGAGCTGCCCCGTTGAGTAA+TGG | + | chr8_4:53136191-53136210 | Msa1333090:CDS | 60.0% | |
| CCGACAGAAGGTCATGCAGG+AGG | + | chr8_4:53137498-53137517 | Msa1333090:CDS | 60.0% | |
| TTTCGAGGTGGCGCCAACAC+TGG | - | chr8_4:53137562-53137581 | None:intergenic | 60.0% | |
| CTGCCAGCGAACAATTCGCG+AGG | + | chr8_4:53138205-53138224 | Msa1333090:three_prime_UTR | 60.0% | |
| ! | CCTTCCTCAGGGTACCCGAG+GGG | + | chr8_4:53135489-53135508 | Msa1333090:CDS | 65.0% |
| GGCTATGGCACTGCCACGAC+AGG | - | chr8_4:53135720-53135739 | None:intergenic | 65.0% | |
| CCCCTCGGGTACCCTGAGGA+AGG | - | chr8_4:53135492-53135511 | None:intergenic | 70.0% | |
| TTGGCCCCTCGGGTACCCTG+AGG | - | chr8_4:53135496-53135515 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 53133741 | 53138541 | 53133741 | ID=Msa1333090;Name=Msa1333090 |
| chr8_4 | mRNA | 53133741 | 53138541 | 53133741 | ID=Msa1333090-mRNA-1;Parent=Msa1333090;Name=Msa1333090-mRNA-1;_AED=0.04;_eAED=0.04;_QI=257|1|1|1|0.71|0.62|8|560|652 |
| chr8_4 | exon | 53133741 | 53133784 | 53133741 | ID=Msa1333090-mRNA-1:exon:16186;Parent=Msa1333090-mRNA-1 |
| chr8_4 | exon | 53133828 | 53133974 | 53133828 | ID=Msa1333090-mRNA-1:exon:16187;Parent=Msa1333090-mRNA-1 |
| chr8_4 | exon | 53134701 | 53134851 | 53134701 | ID=Msa1333090-mRNA-1:exon:16188;Parent=Msa1333090-mRNA-1 |
| chr8_4 | exon | 53134973 | 53135046 | 53134973 | ID=Msa1333090-mRNA-1:exon:16189;Parent=Msa1333090-mRNA-1 |
| chr8_4 | exon | 53135134 | 53135604 | 53135134 | ID=Msa1333090-mRNA-1:exon:16190;Parent=Msa1333090-mRNA-1 |
| chr8_4 | exon | 53136110 | 53136649 | 53136110 | ID=Msa1333090-mRNA-1:exon:16191;Parent=Msa1333090-mRNA-1 |
| chr8_4 | exon | 53136757 | 53136969 | 53136757 | ID=Msa1333090-mRNA-1:exon:16192;Parent=Msa1333090-mRNA-1 |
| chr8_4 | exon | 53137406 | 53138541 | 53137406 | ID=Msa1333090-mRNA-1:exon:16193;Parent=Msa1333090-mRNA-1 |
| chr8_4 | five_prime_UTR | 53133741 | 53133784 | 53133741 | ID=Msa1333090-mRNA-1:five_prime_utr;Parent=Msa1333090-mRNA-1 |
| chr8_4 | five_prime_UTR | 53133828 | 53133974 | 53133828 | ID=Msa1333090-mRNA-1:five_prime_utr;Parent=Msa1333090-mRNA-1 |
| chr8_4 | five_prime_UTR | 53134701 | 53134766 | 53134701 | ID=Msa1333090-mRNA-1:five_prime_utr;Parent=Msa1333090-mRNA-1 |
| chr8_4 | CDS | 53134767 | 53134851 | 53134767 | ID=Msa1333090-mRNA-1:cds;Parent=Msa1333090-mRNA-1 |
| chr8_4 | CDS | 53134973 | 53135046 | 53134973 | ID=Msa1333090-mRNA-1:cds;Parent=Msa1333090-mRNA-1 |
| chr8_4 | CDS | 53135134 | 53135604 | 53135134 | ID=Msa1333090-mRNA-1:cds;Parent=Msa1333090-mRNA-1 |
| chr8_4 | CDS | 53136110 | 53136649 | 53136110 | ID=Msa1333090-mRNA-1:cds;Parent=Msa1333090-mRNA-1 |
| chr8_4 | CDS | 53136757 | 53136969 | 53136757 | ID=Msa1333090-mRNA-1:cds;Parent=Msa1333090-mRNA-1 |
| chr8_4 | CDS | 53137406 | 53137981 | 53137406 | ID=Msa1333090-mRNA-1:cds;Parent=Msa1333090-mRNA-1 |
| chr8_4 | three_prime_UTR | 53137982 | 53138541 | 53137982 | ID=Msa1333090-mRNA-1:three_prime_utr;Parent=Msa1333090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
