Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489120 | XP_003598212.1 | 97.680 | 388 | 9 | 0 | 1 | 388 | 1 | 388 | 0.0 | 782 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489120 | sp|Q9SUW0|TPPG_ARATH | 62.304 | 382 | 129 | 2 | 1 | 382 | 1 | 367 | 7.56e-166 | 472 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489120 | G7IYG6 | 97.680 | 388 | 9 | 0 | 1 | 388 | 1 | 388 | 0.0 | 782 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0393750 | Msa0489120 | 0.872663 | 2.676005e-67 | -8.615850e-47 |
| Msa0441600 | Msa0489120 | 0.962810 | 2.529174e-121 | -8.615850e-47 |
| Msa0249360 | Msa0489120 | 0.840966 | 6.325132e-58 | -8.615850e-47 |
| Msa0258040 | Msa0489120 | 0.804928 | 1.706580e-49 | -8.615850e-47 |
| Msa0266220 | Msa0489120 | 0.861233 | 1.184911e-63 | -8.615850e-47 |
| Msa0287680 | Msa0489120 | 0.853000 | 3.190707e-61 | -8.615850e-47 |
| Msa0287850 | Msa0489120 | 0.828313 | 9.638951e-55 | -8.615850e-47 |
| Msa0335360 | Msa0489120 | 0.807214 | 5.639721e-50 | -8.615850e-47 |
| Msa0351780 | Msa0489120 | 0.909759 | 3.990373e-82 | -8.615850e-47 |
| Msa0489120 | Msa0529670 | 0.811397 | 7.146021e-51 | -8.615850e-47 |
| Msa0489120 | Msa0544730 | 0.825925 | 3.593251e-54 | -8.615850e-47 |
| Msa0489120 | Msa0572750 | 0.817896 | 2.599941e-52 | -8.615850e-47 |
| Msa0489120 | Msa0585840 | 0.808085 | 3.682317e-50 | -8.615850e-47 |
| Msa0489120 | Msa0608270 | 0.839147 | 1.885195e-57 | -8.615850e-47 |
| Msa0489120 | Msa0614380 | 0.813329 | 2.705346e-51 | -8.615850e-47 |
| Msa0489120 | Msa0627770 | 0.800574 | 1.352420e-48 | -8.615850e-47 |
| Msa0489120 | Msa0648830 | 0.838845 | 2.257532e-57 | -8.615850e-47 |
| Msa0489120 | Msa0685060 | 0.810068 | 1.385112e-50 | -8.615850e-47 |
| Msa0489120 | Msa0697590 | 0.809516 | 1.820209e-50 | -8.615850e-47 |
| Msa0489120 | Msa0875340 | 0.838801 | 2.317635e-57 | -8.615850e-47 |
| Msa0489120 | Msa0907710 | 0.841736 | 3.965642e-58 | -8.615850e-47 |
| Msa0489120 | Msa0940560 | 0.851841 | 6.824239e-61 | -8.615850e-47 |
| Msa0489120 | Msa0977100 | 0.850641 | 1.489069e-60 | -8.615850e-47 |
| Msa0489120 | Msa1030030 | 0.816762 | 4.678449e-52 | -8.615850e-47 |
| Msa0489120 | Msa1078550 | 0.819221 | 1.301154e-52 | -8.615850e-47 |
| Msa0489120 | Msa1078560 | 0.808588 | 2.876766e-50 | -8.615850e-47 |
| Msa0489120 | Msa1078660 | 0.828337 | 9.509311e-55 | -8.615850e-47 |
| Msa0489120 | Msa1169380 | 0.825166 | 5.437259e-54 | -8.615850e-47 |
| Msa0489120 | Msa1169460 | 0.820896 | 5.383054e-53 | -8.615850e-47 |
| Msa0489120 | Msa1204350 | 0.811105 | 8.269143e-51 | -8.615850e-47 |
| Msa0489120 | Msa1207330 | 0.800233 | 1.586285e-48 | -8.615850e-47 |
| Msa0489120 | Msa1329900 | 0.804946 | 1.692526e-49 | -8.615850e-47 |
| Msa0489120 | Msa1337440 | 0.801254 | 9.817698e-49 | -8.615850e-47 |
| Msa0489120 | Msa1350700 | 0.862406 | 5.183013e-64 | -8.615850e-47 |
| Msa0489120 | Msa1360260 | 0.869864 | 2.248454e-66 | -8.615850e-47 |
| Msa0489120 | Msa1439410 | 0.855910 | 4.592457e-62 | -8.615850e-47 |
| Msa0489120 | Msa1453050 | 0.812356 | 4.418449e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489120 | MtrunA17_Chr3g0079281 | 97.680 | 388 | 9 | 0 | 1 | 388 | 1 | 388 | 0.0 | 782 |
| Msa0489120 | MtrunA17_Chr4g0018441 | 73.969 | 388 | 91 | 4 | 1 | 385 | 1 | 381 | 0.0 | 575 |
| Msa0489120 | MtrunA17_Chr4g0056481 | 61.140 | 386 | 142 | 5 | 1 | 383 | 1 | 381 | 6.03e-163 | 462 |
| Msa0489120 | MtrunA17_Chr8g0382441 | 53.039 | 362 | 151 | 4 | 25 | 386 | 17 | 359 | 6.52e-131 | 380 |
| Msa0489120 | MtrunA17_Chr3g0115661 | 55.422 | 332 | 126 | 4 | 58 | 388 | 53 | 363 | 8.47e-127 | 369 |
| Msa0489120 | MtrunA17_Chr5g0425711 | 53.846 | 325 | 130 | 3 | 62 | 386 | 69 | 373 | 7.48e-119 | 350 |
| Msa0489120 | MtrunA17_Chr3g0126491 | 54.452 | 292 | 126 | 4 | 95 | 382 | 64 | 352 | 3.17e-110 | 327 |
| Msa0489120 | MtrunA17_Chr8g0347141 | 51.361 | 294 | 142 | 1 | 95 | 387 | 20 | 313 | 1.37e-106 | 316 |
| Msa0489120 | MtrunA17_Chr4g0018781 | 60.000 | 105 | 40 | 2 | 70 | 173 | 1 | 104 | 2.62e-33 | 120 |
| Msa0489120 | MtrunA17_Chr4g0018791 | 68.852 | 61 | 18 | 1 | 268 | 327 | 3 | 63 | 2.48e-21 | 87.0 |
| Msa0489120 | MtrunA17_Chr4g0041381 | 28.169 | 284 | 159 | 12 | 114 | 379 | 588 | 844 | 5.72e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489120 | AT4G22590.1 | 62.304 | 382 | 129 | 2 | 1 | 382 | 1 | 367 | 7.69e-167 | 472 |
| Msa0489120 | AT5G51460.2 | 60.204 | 392 | 139 | 6 | 1 | 385 | 1 | 382 | 4.75e-166 | 470 |
| Msa0489120 | AT5G51460.4 | 60.204 | 392 | 139 | 6 | 1 | 385 | 1 | 382 | 4.75e-166 | 470 |
| Msa0489120 | AT5G51460.1 | 60.051 | 393 | 139 | 7 | 1 | 385 | 1 | 383 | 3.49e-164 | 465 |
| Msa0489120 | AT5G51460.5 | 60.051 | 393 | 139 | 7 | 1 | 385 | 1 | 383 | 3.49e-164 | 465 |
| Msa0489120 | AT5G51460.3 | 60.051 | 393 | 139 | 7 | 1 | 385 | 1 | 383 | 3.49e-164 | 465 |
| Msa0489120 | AT4G12430.1 | 62.304 | 382 | 120 | 4 | 1 | 382 | 1 | 358 | 1.63e-157 | 448 |
| Msa0489120 | AT1G35910.1 | 55.747 | 348 | 136 | 4 | 45 | 387 | 32 | 366 | 2.93e-130 | 379 |
| Msa0489120 | AT4G39770.1 | 57.632 | 321 | 115 | 2 | 64 | 384 | 45 | 344 | 3.62e-125 | 365 |
| Msa0489120 | AT5G10100.3 | 53.704 | 324 | 132 | 3 | 62 | 384 | 58 | 364 | 1.64e-121 | 356 |
| Msa0489120 | AT5G10100.1 | 53.704 | 324 | 132 | 3 | 62 | 384 | 69 | 375 | 1.98e-121 | 357 |
| Msa0489120 | AT1G78090.1 | 50.272 | 368 | 153 | 7 | 31 | 387 | 23 | 371 | 2.21e-120 | 353 |
| Msa0489120 | AT5G65140.1 | 53.870 | 323 | 132 | 2 | 62 | 384 | 62 | 367 | 4.76e-119 | 350 |
| Msa0489120 | AT4G39770.2 | 57.282 | 309 | 111 | 2 | 64 | 372 | 45 | 332 | 1.58e-118 | 347 |
| Msa0489120 | AT2G22190.1 | 55.000 | 320 | 120 | 2 | 66 | 385 | 55 | 350 | 8.07e-118 | 347 |
| Msa0489120 | AT1G22210.1 | 54.206 | 321 | 131 | 2 | 67 | 387 | 14 | 318 | 7.30e-117 | 343 |
| Msa0489120 | AT1G78090.2 | 50.425 | 353 | 145 | 7 | 31 | 372 | 23 | 356 | 2.40e-115 | 340 |
| Msa0489120 | AT5G10100.2 | 53.376 | 311 | 127 | 3 | 62 | 371 | 58 | 351 | 6.59e-115 | 339 |
| Msa0489120 | AT2G22190.2 | 54.545 | 308 | 116 | 2 | 66 | 373 | 55 | 338 | 3.70e-112 | 332 |
| Msa0489120 | AT5G10100.4 | 50.309 | 324 | 123 | 4 | 62 | 384 | 69 | 355 | 8.26e-107 | 318 |
| Msa0489120 | AT5G65140.3 | 53.571 | 280 | 113 | 2 | 62 | 341 | 62 | 324 | 4.46e-102 | 305 |
| Msa0489120 | AT5G65140.2 | 52.344 | 256 | 105 | 2 | 62 | 317 | 62 | 300 | 3.95e-89 | 272 |
| Msa0489120 | AT1G70290.2 | 27.143 | 280 | 157 | 13 | 119 | 379 | 545 | 796 | 8.10e-12 | 67.4 |
| Msa0489120 | AT1G70290.1 | 27.143 | 280 | 157 | 13 | 119 | 379 | 583 | 834 | 9.16e-12 | 67.4 |
Find 105 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTTCATTTATTGGTTTA+AGG | 0.080685 | 3_4:-9313372 | None:intergenic |
| TTAAAGATAGATTCTGATTT+TGG | 0.132673 | 3_4:+9313102 | Msa0489120:three_prime_UTR |
| CCATGAGTTAATCGTAAATT+TGG | 0.145955 | 3_4:-9312239 | None:intergenic |
| GAACAATTCCCTTCATTTAT+TGG | 0.150996 | 3_4:-9313379 | None:intergenic |
| TTTCTTCATCTTCTTATTCT+TGG | 0.164614 | 3_4:+9308801 | Msa0489120:five_prime_UTR |
| AATGAAGATGTGTATTTATA+AGG | 0.198078 | 3_4:-9308717 | None:intergenic |
| GACCGATGAAGATGCATTTA+AGG | 0.231051 | 3_4:+9312628 | Msa0489120:CDS |
| CTCGATGATGTTCGTTCTAA+TGG | 0.251756 | 3_4:+9310515 | Msa0489120:CDS |
| AGTGAGGTTAATAAAGGTTT+TGG | 0.252937 | 3_4:+9312757 | Msa0489120:CDS |
| CCCTTCATTTATTGGTTTAA+GGG | 0.314433 | 3_4:-9313371 | None:intergenic |
| TCGGTAGACCTAATGCAATT+AGG | 0.323769 | 3_4:-9311473 | None:intergenic |
| TACTCACAAGAAAATATCTA+TGG | 0.331294 | 3_4:+9310568 | Msa0489120:CDS |
| AGTCATGGAATGGACATAAT+TGG | 0.337966 | 3_4:+9311419 | Msa0489120:CDS |
| TAATCAAAATTATATAAAAT+AGG | 0.340161 | 3_4:-9313492 | None:intergenic |
| GAGGAGCATGATTTGTCTTC+AGG | 0.346590 | 3_4:-9310349 | None:intergenic |
| CTAGAGTTTCCCTCAGCAAC+TGG | 0.353880 | 3_4:+9310744 | Msa0489120:CDS |
| CAATAATAATAATGAGAGTT+AGG | 0.355918 | 3_4:-9308772 | None:intergenic |
| TAATGTACAGAGTTGGGATT+TGG | 0.368930 | 3_4:+9312181 | Msa0489120:intron |
| CGGTAGACCTAATGCAATTA+GGG | 0.375663 | 3_4:-9311472 | None:intergenic |
| CTGGAGTTAAAGCTTGTATT+AGG | 0.376719 | 3_4:+9309061 | Msa0489120:five_prime_UTR |
| TAAACCGCGTTGCTTTCTTT+AGG | 0.393472 | 3_4:-9312799 | None:intergenic |
| ATAATCACCCTAATTGCATT+AGG | 0.394713 | 3_4:+9311465 | Msa0489120:CDS |
| AAGAAAATATCTATGGATAT+TGG | 0.399008 | 3_4:+9310575 | Msa0489120:CDS |
| CGCTCAGGATTGTCGACAAT+TGG | 0.399987 | 3_4:-9310843 | None:intergenic |
| ACAATTCCACGGAAGAAGAT+AGG | 0.410826 | 3_4:+9310488 | Msa0489120:CDS |
| ACCAGTGATTGACTGGGATA+AGG | 0.413046 | 3_4:+9312425 | Msa0489120:CDS |
| CCAGTGATTGACTGGGATAA+GGG | 0.414884 | 3_4:+9312426 | Msa0489120:CDS |
| CTTCAGGTACATGAATTTGT+TGG | 0.418768 | 3_4:+9311371 | Msa0489120:intron |
| CCTTGATCTTGTCCTCGTTA+AGG | 0.420181 | 3_4:-9310390 | None:intergenic |
| TAAAACTGGTACCTTCTTAT+CGG | 0.421696 | 3_4:-9311492 | None:intergenic |
| AGGTTCGACCAGTGATTGAC+TGG | 0.424416 | 3_4:+9312418 | Msa0489120:CDS |
| ATGAAGATGTGTATTTATAA+GGG | 0.432922 | 3_4:-9308716 | None:intergenic |
| GTGTATTTATAAGGGCTGTT+TGG | 0.435403 | 3_4:-9308708 | None:intergenic |
| TGATTTGTCTTCAGGTCCAT+TGG | 0.443083 | 3_4:-9310341 | None:intergenic |
| TTGTGGAAGCTGTAAATTCA+TGG | 0.446797 | 3_4:+9313235 | Msa0489120:three_prime_UTR |
| TTCTCAAGTCACTTGTGGTA+TGG | 0.448368 | 3_4:+9313023 | Msa0489120:CDS |
| AGAAAAGTTGAAGTATTTGT+CGG | 0.453164 | 3_4:-9310449 | None:intergenic |
| GTTTCCATGTAATGCACGTT+AGG | 0.454235 | 3_4:+9308679 | Msa0489120:five_prime_UTR |
| TGCTGCTTATTTAACCTGGC+TGG | 0.454459 | 3_4:+9310625 | Msa0489120:CDS |
| CCCTTATCCCAGTCAATCAC+TGG | 0.457934 | 3_4:-9312426 | None:intergenic |
| ATGCATACCTCATCAATCAT+AGG | 0.460691 | 3_4:-9311642 | None:intergenic |
| TAAGCTCTGAAGAAGATCAT+AGG | 0.462078 | 3_4:+9313172 | Msa0489120:three_prime_UTR |
| CAGGATATTACATACGTTGT+CGG | 0.464014 | 3_4:-9310877 | None:intergenic |
| GCCCTTAAACCAATAAATGA+AGG | 0.465117 | 3_4:+9313370 | Msa0489120:three_prime_UTR |
| TTAACAGATCTTCATTATGC+TGG | 0.467705 | 3_4:+9311395 | Msa0489120:CDS |
| CAAATTACTAACCTTGCAAA+AGG | 0.474768 | 3_4:+9310777 | Msa0489120:CDS |
| CTGATGCTGCTTATTTAACC+TGG | 0.480480 | 3_4:+9310621 | Msa0489120:CDS |
| ATGATGTTCGTTCTAATGGT+TGG | 0.487662 | 3_4:+9310519 | Msa0489120:CDS |
| CATTGTTTCTTGATTACGAT+GGG | 0.487850 | 3_4:+9310811 | Msa0489120:CDS |
| GTCACCTAACGTGCATTACA+TGG | 0.490439 | 3_4:-9308683 | None:intergenic |
| CTTCATTATGCTGGTAGTCA+TGG | 0.492396 | 3_4:+9311404 | Msa0489120:CDS |
| TTCCGTGGAATTGTTAGCGA+TGG | 0.496157 | 3_4:-9310479 | None:intergenic |
| GGAGAGCATGACAGACTTGA+AGG | 0.505126 | 3_4:-9310428 | None:intergenic |
| ACAAGATCAAGGCTCGGTGC+AGG | 0.507337 | 3_4:+9310401 | Msa0489120:CDS |
| CAACATTACAACCGCGAAAG+AGG | 0.507585 | 3_4:+9308654 | Msa0489120:five_prime_UTR |
| ATCCTTAGATCTGGATCCAA+TGG | 0.507924 | 3_4:+9310325 | Msa0489120:intron |
| AAGGTTAGTAATTTGTTCAA+AGG | 0.511038 | 3_4:-9310769 | None:intergenic |
| CATGGAAACAACCTCTTTCG+CGG | 0.511089 | 3_4:-9308665 | None:intergenic |
| TTTCCGACTGCAATAATTAG+CGG | 0.519792 | 3_4:+9311030 | Msa0489120:CDS |
| CTCTGTAGTATAATGTATAG+AGG | 0.522728 | 3_4:+9313054 | Msa0489120:exon |
| CTCTCTTTGTGATCCTTCAG+AGG | 0.524465 | 3_4:+9312822 | Msa0489120:CDS |
| GAATTCTCCCTTAAATTGAA+AGG | 0.525250 | 3_4:-9313414 | None:intergenic |
| TCAGATATAGACTGTCTAAG+AGG | 0.526026 | 3_4:-9311443 | None:intergenic |
| TGTACAGAGTTGGGATTTGG+TGG | 0.528879 | 3_4:+9312184 | Msa0489120:intron |
| TAGCGGAAGAAGTCGTGAAA+AGG | 0.529643 | 3_4:+9311047 | Msa0489120:CDS |
| CATTAGGTCTACCGATAAGA+AGG | 0.533743 | 3_4:+9311481 | Msa0489120:CDS |
| AACCTTAAATGCATCTTCAT+CGG | 0.535866 | 3_4:-9312630 | None:intergenic |
| TTCAAAGGCCCCAGTTGCTG+AGG | 0.545026 | 3_4:-9310754 | None:intergenic |
| TCGGACATGAAAGCACGCTC+AGG | 0.550059 | 3_4:-9310858 | None:intergenic |
| TAGAGTTTCCCTCAGCAACT+GGG | 0.550994 | 3_4:+9310745 | Msa0489120:CDS |
| GATGTGCTAGCTATATATAT+TGG | 0.554483 | 3_4:+9312596 | Msa0489120:CDS |
| CTTCCGCTAATTATTGCAGT+CGG | 0.556782 | 3_4:-9311033 | None:intergenic |
| ACCATAAGAATTACCTCTGA+AGG | 0.557104 | 3_4:-9312835 | None:intergenic |
| TTATGCTGGTAGTCATGGAA+TGG | 0.563818 | 3_4:+9311409 | Msa0489120:CDS |
| GGAATTTCTCAAGTCACTTG+TGG | 0.574443 | 3_4:+9313018 | Msa0489120:CDS |
| CCTTAACGAGGACAAGATCA+AGG | 0.576103 | 3_4:+9310390 | Msa0489120:CDS |
| GCAGGAATTCAGCAGCAGGT+TGG | 0.579369 | 3_4:-9311620 | None:intergenic |
| CCAAATTTACGATTAACTCA+TGG | 0.579608 | 3_4:+9312239 | Msa0489120:CDS |
| ATACCTCATCAATCATAGGC+AGG | 0.580942 | 3_4:-9311638 | None:intergenic |
| ATATCTATGGATATTGGTCA+TGG | 0.583838 | 3_4:+9310581 | Msa0489120:CDS |
| ATAGGCAGGAATTCAGCAGC+AGG | 0.587802 | 3_4:-9311624 | None:intergenic |
| AAGATTATCAAAATCTACCA+AGG | 0.590336 | 3_4:+9313282 | Msa0489120:three_prime_UTR |
| CTATATATATTGGTGACGAT+CGG | 0.591664 | 3_4:+9312606 | Msa0489120:CDS |
| CCCTTAAACCAATAAATGAA+GGG | 0.593813 | 3_4:+9313371 | Msa0489120:three_prime_UTR |
| CGCGTTGCTTTCTTTAGGAG+CGG | 0.596598 | 3_4:-9312794 | None:intergenic |
| TCAAAGGCCCCAGTTGCTGA+GGG | 0.603038 | 3_4:-9310753 | None:intergenic |
| AGAATTCCTATCTTCTTCCG+TGG | 0.605970 | 3_4:-9310494 | None:intergenic |
| GCATTGTTTCTTGATTACGA+TGG | 0.607237 | 3_4:+9310810 | Msa0489120:CDS |
| GTCCATCGCTAACAATTCCA+CGG | 0.612604 | 3_4:+9310477 | Msa0489120:CDS |
| ACGATTAACTCATGGTCGGA+AGG | 0.614382 | 3_4:+9312247 | Msa0489120:CDS |
| GTATGTGTTTCATACCAGCC+AGG | 0.620718 | 3_4:-9310639 | None:intergenic |
| AGATTATCAAAATCTACCAA+GGG | 0.625044 | 3_4:+9313283 | Msa0489120:three_prime_UTR |
| ATTTACGATTAACTCATGGT+CGG | 0.632995 | 3_4:+9312243 | Msa0489120:CDS |
| AGAGTTTCCCTCAGCAACTG+GGG | 0.635565 | 3_4:+9310746 | Msa0489120:CDS |
| CTGATACTGCAACCTTAACG+AGG | 0.654522 | 3_4:+9310378 | Msa0489120:CDS |
| ATTCCTGCCTATGATTGATG+AGG | 0.658507 | 3_4:+9311635 | Msa0489120:CDS |
| ACGAGGACAAGATCAAGGCT+CGG | 0.658800 | 3_4:+9310395 | Msa0489120:CDS |
| GAGTGTACAAAAGACATCAA+AGG | 0.661986 | 3_4:+9311945 | Msa0489120:CDS |
| GATTATCAAAATCTACCAAG+GGG | 0.673290 | 3_4:+9313284 | Msa0489120:three_prime_UTR |
| GGTTCGACCAGTGATTGACT+GGG | 0.682318 | 3_4:+9312419 | Msa0489120:CDS |
| ACATTATCGTAATGTAGACG+AGG | 0.705017 | 3_4:+9312004 | Msa0489120:CDS |
| TTATCGTAATGTAGACGAGG+AGG | 0.716669 | 3_4:+9312007 | Msa0489120:CDS |
| CGCTCCTAAAGAAAGCAACG+CGG | 0.719562 | 3_4:+9312795 | Msa0489120:CDS |
| GTTGCAGTATCAGCAATGCG+AGG | 0.729280 | 3_4:-9310368 | None:intergenic |
| ATTATCAAAATCTACCAAGG+GGG | 0.730497 | 3_4:+9313285 | Msa0489120:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTATTATTTTTTTTGG+AGG | + | chr3_4:9309113-9309132 | Msa0489120:intron | 10.0% |
| !!! | TTTGTTTGTTATTATTTTAA+TGG | + | chr3_4:9309207-9309226 | Msa0489120:intron | 10.0% |
| !! | AAATAAGTTATCAAAAAAAA+AGG | - | chr3_4:9309417-9309436 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTTATATCATGA+TGG | + | chr3_4:9309987-9310006 | Msa0489120:intron | 10.0% |
| !!! | TTAATTTGTTGATTATATAA+TGG | + | chr3_4:9312486-9312505 | Msa0489120:intron | 10.0% |
| !! | TTTATATAACTGATATAAAA+TGG | + | chr3_4:9312718-9312737 | Msa0489120:intron | 10.0% |
| !!! | TAAATAATATTTCTTTTCTA+GGG | - | chr3_4:9313320-9313339 | None:intergenic | 10.0% |
| !!! | TTAAATAATATTTCTTTTCT+AGG | - | chr3_4:9313321-9313340 | None:intergenic | 10.0% |
| !!! | TTTTTGATAACTTATTTCAT+AGG | + | chr3_4:9309420-9309439 | Msa0489120:intron | 15.0% |
| !!! | TTTTGATAACTTATTTCATA+GGG | + | chr3_4:9309421-9309440 | Msa0489120:intron | 15.0% |
| !!! | TTATATTACTTTAGTTTTCA+GGG | - | chr3_4:9309522-9309541 | None:intergenic | 15.0% |
| !!! | ATTATATTACTTTAGTTTTC+AGG | - | chr3_4:9309523-9309542 | None:intergenic | 15.0% |
| !!! | TTATTTTACTTGTTATTGAA+CGG | - | chr3_4:9309826-9309845 | None:intergenic | 15.0% |
| !!! | TTTTGTTTTGTTAAAAGTTT+TGG | + | chr3_4:9310227-9310246 | Msa0489120:intron | 15.0% |
| !! | TATTATTAAATAAAGTGACA+CGG | - | chr3_4:9311270-9311289 | None:intergenic | 15.0% |
| !! | GAAGATTATAAATCAATATA+GGG | - | chr3_4:9311569-9311588 | None:intergenic | 15.0% |
| !! | AGAAGATTATAAATCAATAT+AGG | - | chr3_4:9311570-9311589 | None:intergenic | 15.0% |
| !!! | TTATAATCTTCTAAAATTAC+AGG | + | chr3_4:9311578-9311597 | Msa0489120:intron | 15.0% |
| !!! | TATAATCTTCTAAAATTACA+GGG | + | chr3_4:9311579-9311598 | Msa0489120:intron | 15.0% |
| !!! | AATCTAGAATAAAAATTGAT+AGG | - | chr3_4:9311701-9311720 | None:intergenic | 15.0% |
| !!! | TTTTATTCTAGATTGAAATA+CGG | + | chr3_4:9311707-9311726 | Msa0489120:intron | 15.0% |
| !!! | TCATTTTCTCAAATTATTAT+TGG | + | chr3_4:9311818-9311837 | Msa0489120:intron | 15.0% |
| !!! | AACAAAATTTTTATACAAGA+GGG | - | chr3_4:9312069-9312088 | None:intergenic | 15.0% |
| !!! | AAACAAAATTTTTATACAAG+AGG | - | chr3_4:9312070-9312089 | None:intergenic | 15.0% |
| !! | TATATCAGTTATATAAAGTA+AGG | - | chr3_4:9312715-9312734 | None:intergenic | 15.0% |
| !! | GAATAATGTTTGTATAATTA+GGG | + | chr3_4:9312940-9312959 | Msa0489120:intron | 15.0% |
| !!! | TTATTTTCTTTCTGAATTAT+TGG | + | chr3_4:9313342-9313361 | Msa0489120:three_prime_UTR | 15.0% |
| !! | AATTGAAAGGAAAAAAATAA+AGG | - | chr3_4:9313404-9313423 | None:intergenic | 15.0% |
| !!! | ATTTTTTTCCTTTCAATTTA+AGG | + | chr3_4:9313406-9313425 | Msa0489120:three_prime_UTR | 15.0% |
| !!! | TTTTTTTCCTTTCAATTTAA+GGG | + | chr3_4:9313407-9313426 | Msa0489120:three_prime_UTR | 15.0% |
| !!! | TTCATTTTTTACATGTAATT+TGG | + | chr3_4:9313444-9313463 | Msa0489120:three_prime_UTR | 15.0% |
| !! | ATGAAGATGTGTATTTATAA+GGG | - | chr3_4:9308719-9308738 | None:intergenic | 20.0% |
| !! | AATGAAGATGTGTATTTATA+AGG | - | chr3_4:9308720-9308739 | None:intergenic | 20.0% |
| !! | CAATAATAATAATGAGAGTT+AGG | - | chr3_4:9308775-9308794 | None:intergenic | 20.0% |
| !! | GTTAATATTAGAAACATGTT+TGG | - | chr3_4:9308944-9308963 | None:intergenic | 20.0% |
| !! | TTAACTCTTTCTTACATATT+TGG | + | chr3_4:9308959-9308978 | Msa0489120:intron | 20.0% |
| !! | GAATAATAACCATTAGTAAA+AGG | - | chr3_4:9309297-9309316 | None:intergenic | 20.0% |
| !!! | TAATATAATTTGCCAACATT+TGG | + | chr3_4:9309534-9309553 | Msa0489120:intron | 20.0% |
| !!! | TTCTTTTTATAACCAAATGT+TGG | - | chr3_4:9309549-9309568 | None:intergenic | 20.0% |
| !!! | AACTTTTTCAAAGTTTTGTT+TGG | - | chr3_4:9309961-9309980 | None:intergenic | 20.0% |
| !! | AATTTAATAGGTAGAAGAAT+TGG | - | chr3_4:9310034-9310053 | None:intergenic | 20.0% |
| !! | TTGCATATGCATAATTTAAT+AGG | - | chr3_4:9310046-9310065 | None:intergenic | 20.0% |
| !!! | TTGGTTTTAAAGTAGAAATT+TGG | + | chr3_4:9310246-9310265 | Msa0489120:intron | 20.0% |
| !!! | ATCAATTTTGTTCCAATTTA+AGG | + | chr3_4:9310274-9310293 | Msa0489120:intron | 20.0% |
| !! | AAGAAAATATCTATGGATAT+TGG | + | chr3_4:9310575-9310594 | Msa0489120:CDS | 20.0% |
| !!! | TTTTTACAAGAAAAATGTTG+CGG | - | chr3_4:9311304-9311323 | None:intergenic | 20.0% |
| !!! | TTCTAAAAGTATCTTTTGAA+AGG | + | chr3_4:9311541-9311560 | Msa0489120:intron | 20.0% |
| !!! | TCTAAAAGTATCTTTTGAAA+GGG | + | chr3_4:9311542-9311561 | Msa0489120:intron | 20.0% |
| !! | TGAAAATGAAACTAAATAAG+AGG | - | chr3_4:9312159-9312178 | None:intergenic | 20.0% |
| !! | TAAAATGAGTAGAAAAGTTT+AGG | - | chr3_4:9312291-9312310 | None:intergenic | 20.0% |
| !! | GGAATAATGTTTGTATAATT+AGG | + | chr3_4:9312939-9312958 | Msa0489120:intron | 20.0% |
| !!! | TTAAAGATAGATTCTGATTT+TGG | + | chr3_4:9313102-9313121 | Msa0489120:three_prime_UTR | 20.0% |
| !!! | TGAGAAAATTTCAATTTTCA+AGG | + | chr3_4:9313132-9313151 | Msa0489120:three_prime_UTR | 20.0% |
| !!! | GAGAAAATTTCAATTTTCAA+GGG | + | chr3_4:9313133-9313152 | Msa0489120:three_prime_UTR | 20.0% |
| ! | TTTCTTCATCTTCTTATTCT+TGG | + | chr3_4:9308801-9308820 | Msa0489120:five_prime_UTR | 25.0% |
| !! | TCTTTCACTTTCTTTTCTTA+GGG | + | chr3_4:9308847-9308866 | Msa0489120:intron | 25.0% |
| !!! | TTTTTAAGATTCTTGAACCT+TGG | + | chr3_4:9309162-9309181 | Msa0489120:intron | 25.0% |
| !!! | TTGTTGACTTTCTATTGTTT+TGG | + | chr3_4:9309243-9309262 | Msa0489120:intron | 25.0% |
| !!! | TTGTGTACTTTCTTTTGATT+TGG | + | chr3_4:9309344-9309363 | Msa0489120:intron | 25.0% |
| !! | TTTGAAATCACTCATGTTAT+AGG | + | chr3_4:9309697-9309716 | Msa0489120:intron | 25.0% |
| ! | TGGGAATAAAAAAACTGAAT+AGG | - | chr3_4:9309748-9309767 | None:intergenic | 25.0% |
| ! | AGCAATTATACAAAGAACAT+GGG | - | chr3_4:9309767-9309786 | None:intergenic | 25.0% |
| ! | AAGCAATTATACAAAGAACA+TGG | - | chr3_4:9309768-9309787 | None:intergenic | 25.0% |
| ! | CAAAGTCAATATCAATTACT+AGG | + | chr3_4:9310063-9310082 | Msa0489120:intron | 25.0% |
| ! | AACAATGTAAGACCTTAAAT+TGG | - | chr3_4:9310289-9310308 | None:intergenic | 25.0% |
| ! | TGTAAAATTATCCTTAGATC+TGG | + | chr3_4:9310316-9310335 | Msa0489120:intron | 25.0% |
| !! | AGAAAAGTTGAAGTATTTGT+CGG | - | chr3_4:9310452-9310471 | None:intergenic | 25.0% |
| !! | ATAGATATTTTCTTGTGAGT+AGG | - | chr3_4:9310569-9310588 | None:intergenic | 25.0% |
| ! | TACTCACAAGAAAATATCTA+TGG | + | chr3_4:9310568-9310587 | Msa0489120:CDS | 25.0% |
| ! | TACAAAAAAGGAAACGAATA+AGG | - | chr3_4:9310714-9310733 | None:intergenic | 25.0% |
| ! | AGCTGCAAAAATTACAAAAA+AGG | - | chr3_4:9310726-9310745 | None:intergenic | 25.0% |
| !!! | AAGGTTAGTAATTTGTTCAA+AGG | - | chr3_4:9310772-9310791 | None:intergenic | 25.0% |
| ! | ACAAGAGAAGAAAAATAATC+AGG | - | chr3_4:9310940-9310959 | None:intergenic | 25.0% |
| ! | ATTTACAATTCTCTATATGC+AGG | - | chr3_4:9311145-9311164 | None:intergenic | 25.0% |
| ! | GTAAAAAAAATGTTCGTGTT+AGG | + | chr3_4:9311317-9311336 | Msa0489120:intron | 25.0% |
| ! | TTGAATGTAAATACATCTGT+CGG | - | chr3_4:9311793-9311812 | None:intergenic | 25.0% |
| ! | TGATGAAATATGTGATAAGT+TGG | - | chr3_4:9312119-9312138 | None:intergenic | 25.0% |
| ! | ACTTATCACATATTTCATCA+TGG | + | chr3_4:9312119-9312138 | Msa0489120:intron | 25.0% |
| ! | TTTCATATAATGTACAGAGT+TGG | + | chr3_4:9312174-9312193 | Msa0489120:intron | 25.0% |
| ! | TTCATATAATGTACAGAGTT+GGG | + | chr3_4:9312175-9312194 | Msa0489120:intron | 25.0% |
| !!! | AACTTGTTACAAAACTTTAG+TGG | + | chr3_4:9312321-9312340 | Msa0489120:intron | 25.0% |
| ! | ATAACAGATGTCTCTTAAAA+AGG | - | chr3_4:9312355-9312374 | None:intergenic | 25.0% |
| !! | TATGTTTACTGATAATGTTC+AGG | + | chr3_4:9312389-9312408 | Msa0489120:intron | 25.0% |
| !! | ATTTAAGGTTAATATGTTGC+TGG | + | chr3_4:9312643-9312662 | Msa0489120:intron | 25.0% |
| !!! | CATTTTGTTTTCTAGTACAT+TGG | + | chr3_4:9312918-9312937 | Msa0489120:intron | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+AGG | - | chr3_4:9312966-9312985 | None:intergenic | 25.0% |
| !! | CTTATTTAAAGTCAAACTTG+TGG | + | chr3_4:9312981-9313000 | Msa0489120:intron | 25.0% |
| !! | ATAGATTCTGATTTTGGATT+TGG | + | chr3_4:9313108-9313127 | Msa0489120:three_prime_UTR | 25.0% |
| ! | AAGATTATCAAAATCTACCA+AGG | + | chr3_4:9313282-9313301 | Msa0489120:three_prime_UTR | 25.0% |
| ! | AGATTATCAAAATCTACCAA+GGG | + | chr3_4:9313283-9313302 | Msa0489120:three_prime_UTR | 25.0% |
| ! | CTCTTTCACTTTCTTTTCTT+AGG | + | chr3_4:9308846-9308865 | Msa0489120:intron | 30.0% |
| GTGAGATAATAAAGGAAAGA+CGG | - | chr3_4:9308922-9308941 | None:intergenic | 30.0% | |
| ! | CATGTTTGGTGAGATAATAA+AGG | - | chr3_4:9308930-9308949 | None:intergenic | 30.0% |
| !!! | GCTAAATATTTTGAAGTAGC+TGG | + | chr3_4:9309042-9309061 | Msa0489120:five_prime_UTR | 30.0% |
| ! | TTTCCTTTGCCTTTTACTAA+TGG | + | chr3_4:9309285-9309304 | Msa0489120:intron | 30.0% |
| TAACCATTAGTAAAAGGCAA+AGG | - | chr3_4:9309291-9309310 | None:intergenic | 30.0% | |
| TTTCATAGGGTAAAGTGATT+AGG | + | chr3_4:9309434-9309453 | Msa0489120:intron | 30.0% | |
| GTAAAGTGATTAGGTAGTTA+TGG | + | chr3_4:9309443-9309462 | Msa0489120:intron | 30.0% | |
| ! | CCTCTGATTTAAAACTTCTT+CGG | - | chr3_4:9309486-9309505 | None:intergenic | 30.0% |
| ACAAATCTTCCTTGCATTAA+TGG | + | chr3_4:9309722-9309741 | Msa0489120:intron | 30.0% | |
| AAGTTGACATCATTCTTCAT+TGG | + | chr3_4:9309892-9309911 | Msa0489120:intron | 30.0% | |
| TAGAAGTCTGCTAGAATTTA+TGG | + | chr3_4:9309918-9309937 | Msa0489120:intron | 30.0% | |
| ! | AATACTTCAACTTTTCTGCA+TGG | + | chr3_4:9310455-9310474 | Msa0489120:CDS | 30.0% |
| ATATCTATGGATATTGGTCA+TGG | + | chr3_4:9310581-9310600 | Msa0489120:CDS | 30.0% | |
| !! | TACCTCTATGTAATTTGTTG+CGG | + | chr3_4:9310668-9310687 | Msa0489120:intron | 30.0% |
| CAAATTACTAACCTTGCAAA+AGG | + | chr3_4:9310777-9310796 | Msa0489120:CDS | 30.0% | |
| ! | CATTGTTTCTTGATTACGAT+GGG | + | chr3_4:9310811-9310830 | Msa0489120:CDS | 30.0% |
| ATTAAATAAAGTGACACGGA+TGG | - | chr3_4:9311266-9311285 | None:intergenic | 30.0% | |
| TTCATGTACCTGAAGAAATA+AGG | - | chr3_4:9311366-9311385 | None:intergenic | 30.0% | |
| TTAACAGATCTTCATTATGC+TGG | + | chr3_4:9311395-9311414 | Msa0489120:CDS | 30.0% | |
| ATAATCACCCTAATTGCATT+AGG | + | chr3_4:9311465-9311484 | Msa0489120:CDS | 30.0% | |
| TAAAACTGGTACCTTCTTAT+CGG | - | chr3_4:9311495-9311514 | None:intergenic | 30.0% | |
| ! | AGTGAAGTAAGATCTAAAAC+TGG | - | chr3_4:9311509-9311528 | None:intergenic | 30.0% |
| !! | TCTTCTAAAATTACAGGGTA+AGG | + | chr3_4:9311584-9311603 | Msa0489120:intron | 30.0% |
| AAGCCTTTGATATGAAGTTT+CGG | - | chr3_4:9311755-9311774 | None:intergenic | 30.0% | |
| ! | TTTGATGTCTTTTGTACACT+CGG | - | chr3_4:9311946-9311965 | None:intergenic | 30.0% |
| ! | ACGCGTTTTTGATATTATGA+AGG | + | chr3_4:9312211-9312230 | Msa0489120:CDS | 30.0% |
| CCATGAGTTAATCGTAAATT+TGG | - | chr3_4:9312242-9312261 | None:intergenic | 30.0% | |
| CCAAATTTACGATTAACTCA+TGG | + | chr3_4:9312239-9312258 | Msa0489120:CDS | 30.0% | |
| ATTTACGATTAACTCATGGT+CGG | + | chr3_4:9312243-9312262 | Msa0489120:CDS | 30.0% | |
| !! | TGATAATGTTCAGGTTTTAG+AGG | + | chr3_4:9312398-9312417 | Msa0489120:intron | 30.0% |
| ! | ACATTTTTGCTTGAATCACT+TGG | + | chr3_4:9312459-9312478 | Msa0489120:CDS | 30.0% |
| GATGTGCTAGCTATATATAT+TGG | + | chr3_4:9312596-9312615 | Msa0489120:CDS | 30.0% | |
| !! | CTATATATATTGGTGACGAT+CGG | + | chr3_4:9312606-9312625 | Msa0489120:CDS | 30.0% |
| AACCTTAAATGCATCTTCAT+CGG | - | chr3_4:9312633-9312652 | None:intergenic | 30.0% | |
| !! | GTTTTGAGTGAGGTTAATAA+AGG | + | chr3_4:9312751-9312770 | Msa0489120:CDS | 30.0% |
| ! | AGTGAGGTTAATAAAGGTTT+TGG | + | chr3_4:9312757-9312776 | Msa0489120:CDS | 30.0% |
| ! | GCAATTTTGTACATTTGCTT+TGG | + | chr3_4:9312888-9312907 | Msa0489120:intron | 30.0% |
| CTCTGTAGTATAATGTATAG+AGG | + | chr3_4:9313054-9313073 | Msa0489120:exon | 30.0% | |
| !! | TTCAATTTTCAAGGGTTTCT+TGG | + | chr3_4:9313141-9313160 | Msa0489120:three_prime_UTR | 30.0% |
| !!! | TTTTTTGTTCAAAGCTCTTG+TGG | + | chr3_4:9313218-9313237 | Msa0489120:three_prime_UTR | 30.0% |
| GATTATCAAAATCTACCAAG+GGG | + | chr3_4:9313284-9313303 | Msa0489120:three_prime_UTR | 30.0% | |
| ATTATCAAAATCTACCAAGG+GGG | + | chr3_4:9313285-9313304 | Msa0489120:three_prime_UTR | 30.0% | |
| !! | CCCTTCATTTATTGGTTTAA+GGG | - | chr3_4:9313374-9313393 | None:intergenic | 30.0% |
| CCCTTAAACCAATAAATGAA+GGG | + | chr3_4:9313371-9313390 | Msa0489120:three_prime_UTR | 30.0% | |
| !! | TCCCTTCATTTATTGGTTTA+AGG | - | chr3_4:9313375-9313394 | None:intergenic | 30.0% |
| GAACAATTCCCTTCATTTAT+TGG | - | chr3_4:9313382-9313401 | None:intergenic | 30.0% | |
| GAATTCTCCCTTAAATTGAA+AGG | - | chr3_4:9313417-9313436 | None:intergenic | 30.0% | |
| GTGTATTTATAAGGGCTGTT+TGG | - | chr3_4:9308711-9308730 | None:intergenic | 35.0% | |
| CTGGAGTTAAAGCTTGTATT+AGG | + | chr3_4:9309061-9309080 | Msa0489120:five_prime_UTR | 35.0% | |
| AAGTGATTAGGTAGTTATGG+TGG | + | chr3_4:9309446-9309465 | Msa0489120:intron | 35.0% | |
| !!! | CCGAAGAAGTTTTAAATCAG+AGG | + | chr3_4:9309483-9309502 | Msa0489120:intron | 35.0% |
| ATCATGATGGCTATTTGAGA+TGG | + | chr3_4:9310000-9310019 | Msa0489120:intron | 35.0% | |
| ATGATGTTCGTTCTAATGGT+TGG | + | chr3_4:9310519-9310538 | Msa0489120:CDS | 35.0% | |
| TTCCGCAACAAATTACATAG+AGG | - | chr3_4:9310673-9310692 | None:intergenic | 35.0% | |
| !! | TGTAATTTGTTGCGGAAGTT+CGG | + | chr3_4:9310676-9310695 | Msa0489120:intron | 35.0% |
| ! | CTATTTTCTTGCCTTTTGCA+AGG | - | chr3_4:9310791-9310810 | None:intergenic | 35.0% |
| ! | GCATTGTTTCTTGATTACGA+TGG | + | chr3_4:9310810-9310829 | Msa0489120:CDS | 35.0% |
| CAGGATATTACATACGTTGT+CGG | - | chr3_4:9310880-9310899 | None:intergenic | 35.0% | |
| ACGTATGTAATATCCTGCAA+AGG | + | chr3_4:9310883-9310902 | Msa0489120:intron | 35.0% | |
| TTTCCGACTGCAATAATTAG+CGG | + | chr3_4:9311030-9311049 | Msa0489120:CDS | 35.0% | |
| AAGAAAAATGTTGCGGAAGA+GGG | - | chr3_4:9311297-9311316 | None:intergenic | 35.0% | |
| CTTCAGGTACATGAATTTGT+TGG | + | chr3_4:9311371-9311390 | Msa0489120:intron | 35.0% | |
| AGTCATGGAATGGACATAAT+TGG | + | chr3_4:9311419-9311438 | Msa0489120:CDS | 35.0% | |
| TCAGATATAGACTGTCTAAG+AGG | - | chr3_4:9311446-9311465 | None:intergenic | 35.0% | |
| ATGCATACCTCATCAATCAT+AGG | - | chr3_4:9311645-9311664 | None:intergenic | 35.0% | |
| GAGTGTACAAAAGACATCAA+AGG | + | chr3_4:9311945-9311964 | Msa0489120:CDS | 35.0% | |
| ACATTATCGTAATGTAGACG+AGG | + | chr3_4:9312004-9312023 | Msa0489120:CDS | 35.0% | |
| GACAACCAAAAAGGAAAGAA+GGG | - | chr3_4:9312047-9312066 | None:intergenic | 35.0% | |
| TAATGTACAGAGTTGGGATT+TGG | + | chr3_4:9312181-9312200 | Msa0489120:intron | 35.0% | |
| ! | CACGTGACATGTTTTCATTT+AGG | + | chr3_4:9312557-9312576 | Msa0489120:intron | 35.0% |
| GATATAAAATGGACCGTAAC+AGG | + | chr3_4:9312729-9312748 | Msa0489120:intron | 35.0% | |
| TCCTTCAGAGGTAATTCTTA+TGG | + | chr3_4:9312834-9312853 | Msa0489120:intron | 35.0% | |
| ACCATAAGAATTACCTCTGA+AGG | - | chr3_4:9312838-9312857 | None:intergenic | 35.0% | |
| !! | TGTATAATTAGGGCCTTGTT+TGG | + | chr3_4:9312950-9312969 | Msa0489120:intron | 35.0% |
| !! | TAAGCTCTGAAGAAGATCAT+AGG | + | chr3_4:9313172-9313191 | Msa0489120:three_prime_UTR | 35.0% |
| TTGTGGAAGCTGTAAATTCA+TGG | + | chr3_4:9313235-9313254 | Msa0489120:three_prime_UTR | 35.0% | |
| GCCCTTAAACCAATAAATGA+AGG | + | chr3_4:9313370-9313389 | Msa0489120:three_prime_UTR | 35.0% | |
| GTTTCCATGTAATGCACGTT+AGG | + | chr3_4:9308679-9308698 | Msa0489120:five_prime_UTR | 40.0% | |
| TTGCACATTGCAAGAAACCA+AGG | - | chr3_4:9309182-9309201 | None:intergenic | 40.0% | |
| CTGAATAGGCCATTAATGCA+AGG | - | chr3_4:9309734-9309753 | None:intergenic | 40.0% | |
| ATCCTTAGATCTGGATCCAA+TGG | + | chr3_4:9310325-9310344 | Msa0489120:intron | 40.0% | |
| ! | TGATTTGTCTTCAGGTCCAT+TGG | - | chr3_4:9310344-9310363 | None:intergenic | 40.0% |
| ACAATTCCACGGAAGAAGAT+AGG | + | chr3_4:9310488-9310507 | Msa0489120:CDS | 40.0% | |
| AGAATTCCTATCTTCTTCCG+TGG | - | chr3_4:9310497-9310516 | None:intergenic | 40.0% | |
| CTCGATGATGTTCGTTCTAA+TGG | + | chr3_4:9310515-9310534 | Msa0489120:CDS | 40.0% | |
| ! | CTGATGCTGCTTATTTAACC+TGG | + | chr3_4:9310621-9310640 | Msa0489120:CDS | 40.0% |
| ! | CTCTGCTACACTTTTAACAG+CGG | - | chr3_4:9311007-9311026 | None:intergenic | 40.0% |
| CTTCCGCTAATTATTGCAGT+CGG | - | chr3_4:9311036-9311055 | None:intergenic | 40.0% | |
| TCATGTTTGTACTAGCTCAG+TGG | + | chr3_4:9311174-9311193 | Msa0489120:intron | 40.0% | |
| !! | ATTTTTCAACTGTACCCGAG+GGG | - | chr3_4:9311241-9311260 | None:intergenic | 40.0% |
| !! | CATTTTTCAACTGTACCCGA+GGG | - | chr3_4:9311242-9311261 | None:intergenic | 40.0% |
| !! | TCATTTTTCAACTGTACCCG+AGG | - | chr3_4:9311243-9311262 | None:intergenic | 40.0% |
| CAAGAAAAATGTTGCGGAAG+AGG | - | chr3_4:9311298-9311317 | None:intergenic | 40.0% | |
| AAATAAGGCGCAACAATGGT+TGG | - | chr3_4:9311351-9311370 | None:intergenic | 40.0% | |
| GAAGAAATAAGGCGCAACAA+TGG | - | chr3_4:9311355-9311374 | None:intergenic | 40.0% | |
| !! | TTGTTGCGCCTTATTTCTTC+AGG | + | chr3_4:9311355-9311374 | Msa0489120:intron | 40.0% |
| CTTCATTATGCTGGTAGTCA+TGG | + | chr3_4:9311404-9311423 | Msa0489120:CDS | 40.0% | |
| TTATGCTGGTAGTCATGGAA+TGG | + | chr3_4:9311409-9311428 | Msa0489120:CDS | 40.0% | |
| CGGTAGACCTAATGCAATTA+GGG | - | chr3_4:9311475-9311494 | None:intergenic | 40.0% | |
| TCGGTAGACCTAATGCAATT+AGG | - | chr3_4:9311476-9311495 | None:intergenic | 40.0% | |
| CATTAGGTCTACCGATAAGA+AGG | + | chr3_4:9311481-9311500 | Msa0489120:CDS | 40.0% | |
| ATTCCTGCCTATGATTGATG+AGG | + | chr3_4:9311635-9311654 | Msa0489120:CDS | 40.0% | |
| ATACCTCATCAATCATAGGC+AGG | - | chr3_4:9311641-9311660 | None:intergenic | 40.0% | |
| GCACCGAAACTTCATATCAA+AGG | + | chr3_4:9311749-9311768 | Msa0489120:intron | 40.0% | |
| CTTCATATCAAAGGCTTGTC+TGG | + | chr3_4:9311758-9311777 | Msa0489120:intron | 40.0% | |
| GTAAATACATCTGTCGGTGT+TGG | - | chr3_4:9311787-9311806 | None:intergenic | 40.0% | |
| ! | TGAAGCACTAACATAGACAC+CGG | - | chr3_4:9311878-9311897 | None:intergenic | 40.0% |
| AGTGCTTCATAGATCATGAC+TGG | + | chr3_4:9311889-9311908 | Msa0489120:intron | 40.0% | |
| GTGCTTCATAGATCATGACT+GGG | + | chr3_4:9311890-9311909 | Msa0489120:intron | 40.0% | |
| TTATCGTAATGTAGACGAGG+AGG | + | chr3_4:9312007-9312026 | Msa0489120:CDS | 40.0% | |
| GGACAACCAAAAAGGAAAGA+AGG | - | chr3_4:9312048-9312067 | None:intergenic | 40.0% | |
| TACAAGAGGGACAACCAAAA+AGG | - | chr3_4:9312056-9312075 | None:intergenic | 40.0% | |
| GGCTATTATGCGTGTATTCA+AGG | + | chr3_4:9312507-9312526 | Msa0489120:intron | 40.0% | |
| GACCGATGAAGATGCATTTA+AGG | + | chr3_4:9312628-9312647 | Msa0489120:CDS | 40.0% | |
| ACCTCACTCAAAACCTGTTA+CGG | - | chr3_4:9312745-9312764 | None:intergenic | 40.0% | |
| ! | TAAACCGCGTTGCTTTCTTT+AGG | - | chr3_4:9312802-9312821 | None:intergenic | 40.0% |
| GTCAAACTTGTGGTATATGC+AGG | + | chr3_4:9312991-9313010 | Msa0489120:intron | 40.0% | |
| GGAATTTCTCAAGTCACTTG+TGG | + | chr3_4:9313018-9313037 | Msa0489120:CDS | 40.0% | |
| TTCTCAAGTCACTTGTGGTA+TGG | + | chr3_4:9313023-9313042 | Msa0489120:CDS | 40.0% | |
| CAACATTACAACCGCGAAAG+AGG | + | chr3_4:9308654-9308673 | Msa0489120:five_prime_UTR | 45.0% | |
| CATGGAAACAACCTCTTTCG+CGG | - | chr3_4:9308668-9308687 | None:intergenic | 45.0% | |
| GTCACCTAACGTGCATTACA+TGG | - | chr3_4:9308686-9308705 | None:intergenic | 45.0% | |
| GTCCATTGGATCCAGATCTA+AGG | - | chr3_4:9310330-9310349 | None:intergenic | 45.0% | |
| ! | GAGGAGCATGATTTGTCTTC+AGG | - | chr3_4:9310352-9310371 | None:intergenic | 45.0% |
| CTGATACTGCAACCTTAACG+AGG | + | chr3_4:9310378-9310397 | Msa0489120:CDS | 45.0% | |
| CCTTGATCTTGTCCTCGTTA+AGG | - | chr3_4:9310393-9310412 | None:intergenic | 45.0% | |
| CCTTAACGAGGACAAGATCA+AGG | + | chr3_4:9310390-9310409 | Msa0489120:CDS | 45.0% | |
| GTCCATCGCTAACAATTCCA+CGG | + | chr3_4:9310477-9310496 | Msa0489120:CDS | 45.0% | |
| TTCCGTGGAATTGTTAGCGA+TGG | - | chr3_4:9310482-9310501 | None:intergenic | 45.0% | |
| ! | TGCTGCTTATTTAACCTGGC+TGG | + | chr3_4:9310625-9310644 | Msa0489120:CDS | 45.0% |
| GTATGTGTTTCATACCAGCC+AGG | - | chr3_4:9310642-9310661 | None:intergenic | 45.0% | |
| TAGAGTTTCCCTCAGCAACT+GGG | + | chr3_4:9310745-9310764 | Msa0489120:CDS | 45.0% | |
| TAGCGGAAGAAGTCGTGAAA+AGG | + | chr3_4:9311047-9311066 | Msa0489120:CDS | 45.0% | |
| !! | CAGCATGTCCGTTTTAGTGT+TGG | + | chr3_4:9311844-9311863 | Msa0489120:intron | 45.0% |
| ! | GAAGCACTAACATAGACACC+GGG | - | chr3_4:9311877-9311896 | None:intergenic | 45.0% |
| TGACTGGGTCATGTTTATGC+AGG | + | chr3_4:9311905-9311924 | Msa0489120:intron | 45.0% | |
| CCAAAAAGGAAAGAAGGGAG+TGG | - | chr3_4:9312042-9312061 | None:intergenic | 45.0% | |
| ! | CCACTCCCTTCTTTCCTTTT+TGG | + | chr3_4:9312039-9312058 | Msa0489120:intron | 45.0% |
| TGTACAGAGTTGGGATTTGG+TGG | + | chr3_4:9312184-9312203 | Msa0489120:intron | 45.0% | |
| ACGATTAACTCATGGTCGGA+AGG | + | chr3_4:9312247-9312266 | Msa0489120:CDS | 45.0% | |
| ACCAGTGATTGACTGGGATA+AGG | + | chr3_4:9312425-9312444 | Msa0489120:CDS | 45.0% | |
| CCAGTGATTGACTGGGATAA+GGG | + | chr3_4:9312426-9312445 | Msa0489120:CDS | 45.0% | |
| !!! | ACCGTAACAGGTTTTGAGTG+AGG | + | chr3_4:9312741-9312760 | Msa0489120:intron | 45.0% |
| CTCTCTTTGTGATCCTTCAG+AGG | + | chr3_4:9312822-9312841 | Msa0489120:CDS | 45.0% | |
| CTTGTGGTATATGCAGGTCA+TGG | + | chr3_4:9312997-9313016 | Msa0489120:intron | 45.0% | |
| TAGGGACATAATAACCCCCT+TGG | - | chr3_4:9313302-9313321 | None:intergenic | 45.0% | |
| !!! | TTCTTTATTATTATTTTTTT+TGG | + | chr3_4:9309110-9309129 | Msa0489120:intron | 5.0% |
| !! | CAAATAAATAAATAAATAAT+TGG | - | chr3_4:9309382-9309401 | None:intergenic | 5.0% |
| !! | CAATTATTTATTTATTTATT+TGG | + | chr3_4:9309380-9309399 | Msa0489120:intron | 5.0% |
| !! | TAATCAAAATTATATAAAAT+AGG | - | chr3_4:9313495-9313514 | None:intergenic | 5.0% |
| GTTGCAGTATCAGCAATGCG+AGG | - | chr3_4:9310371-9310390 | None:intergenic | 50.0% | |
| ACGAGGACAAGATCAAGGCT+CGG | + | chr3_4:9310395-9310414 | Msa0489120:CDS | 50.0% | |
| ! | GGAGAGCATGACAGACTTGA+AGG | - | chr3_4:9310431-9310450 | None:intergenic | 50.0% |
| CTAGAGTTTCCCTCAGCAAC+TGG | + | chr3_4:9310744-9310763 | Msa0489120:CDS | 50.0% | |
| AGAGTTTCCCTCAGCAACTG+GGG | + | chr3_4:9310746-9310765 | Msa0489120:CDS | 50.0% | |
| CGCTCAGGATTGTCGACAAT+TGG | - | chr3_4:9310846-9310865 | None:intergenic | 50.0% | |
| ! | ACAGTGCTATTCGCCTTTGC+AGG | - | chr3_4:9310899-9310918 | None:intergenic | 50.0% |
| AGCTCGACCTTGTAACCTCA+AGG | + | chr3_4:9311201-9311220 | Msa0489120:intron | 50.0% | |
| GCTCGACCTTGTAACCTCAA+GGG | + | chr3_4:9311202-9311221 | Msa0489120:intron | 50.0% | |
| CTCTGTCCCTTGAGGTTACA+AGG | - | chr3_4:9311211-9311230 | None:intergenic | 50.0% | |
| GAGTTGAACTCTGTCCCTTG+AGG | - | chr3_4:9311219-9311238 | None:intergenic | 50.0% | |
| ATAGGCAGGAATTCAGCAGC+AGG | - | chr3_4:9311627-9311646 | None:intergenic | 50.0% | |
| !! | TACGGTGTTATCCTAGCCTG+TGG | + | chr3_4:9311725-9311744 | Msa0489120:intron | 50.0% |
| !! | ATGAAGTTTCGGTGCTCCAC+AGG | - | chr3_4:9311744-9311763 | None:intergenic | 50.0% |
| GCACGGCACCAACACTAAAA+CGG | - | chr3_4:9311855-9311874 | None:intergenic | 50.0% | |
| ACTAACATAGACACCGGGCA+CGG | - | chr3_4:9311872-9311891 | None:intergenic | 50.0% | |
| AGGTTCGACCAGTGATTGAC+TGG | + | chr3_4:9312418-9312437 | Msa0489120:CDS | 50.0% | |
| GGTTCGACCAGTGATTGACT+GGG | + | chr3_4:9312419-9312438 | Msa0489120:CDS | 50.0% | |
| CCCTTATCCCAGTCAATCAC+TGG | - | chr3_4:9312429-9312448 | None:intergenic | 50.0% | |
| ! | CGCGTTGCTTTCTTTAGGAG+CGG | - | chr3_4:9312797-9312816 | None:intergenic | 50.0% |
| CGCTCCTAAAGAAAGCAACG+CGG | + | chr3_4:9312795-9312814 | Msa0489120:CDS | 50.0% | |
| !! | ACAAGATCAAGGCTCGGTGC+AGG | + | chr3_4:9310401-9310420 | Msa0489120:CDS | 55.0% |
| TCAAAGGCCCCAGTTGCTGA+GGG | - | chr3_4:9310756-9310775 | None:intergenic | 55.0% | |
| TTCAAAGGCCCCAGTTGCTG+AGG | - | chr3_4:9310757-9310776 | None:intergenic | 55.0% | |
| ! | TCGGACATGAAAGCACGCTC+AGG | - | chr3_4:9310861-9310880 | None:intergenic | 55.0% |
| GGACAGAGTTCAACTCCCCT+CGG | + | chr3_4:9311223-9311242 | Msa0489120:intron | 55.0% | |
| GACAGAGTTCAACTCCCCTC+GGG | + | chr3_4:9311224-9311243 | Msa0489120:intron | 55.0% | |
| GCAGGAATTCAGCAGCAGGT+TGG | - | chr3_4:9311623-9311642 | None:intergenic | 55.0% | |
| !! | TTTAGTGTTGGTGCCGTGCC+CGG | + | chr3_4:9311856-9311875 | Msa0489120:intron | 55.0% |
| !! | GTTTCGGTGCTCCACAGGCT+AGG | - | chr3_4:9311739-9311758 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 9308644 | 9313528 | 9308644 | ID=Msa0489120;Name=Msa0489120 |
| chr3_4 | mRNA | 9308644 | 9313528 | 9308644 | ID=Msa0489120-mRNA-1;Parent=Msa0489120;Name=Msa0489120-mRNA-1;_AED=0.15;_eAED=0.15;_QI=262|1|1|1|0.83|0.76|13|462|388 |
| chr3_4 | exon | 9308644 | 9308822 | 9308644 | ID=Msa0489120-mRNA-1:exon:3079;Parent=Msa0489120-mRNA-1 |
| chr3_4 | exon | 9309011 | 9309082 | 9309011 | ID=Msa0489120-mRNA-1:exon:3080;Parent=Msa0489120-mRNA-1 |
| chr3_4 | exon | 9310333 | 9310646 | 9310333 | ID=Msa0489120-mRNA-1:exon:3081;Parent=Msa0489120-mRNA-1 |
| chr3_4 | exon | 9310744 | 9310884 | 9310744 | ID=Msa0489120-mRNA-1:exon:3082;Parent=Msa0489120-mRNA-1 |
| chr3_4 | exon | 9310997 | 9311068 | 9310997 | ID=Msa0489120-mRNA-1:exon:3083;Parent=Msa0489120-mRNA-1 |
| chr3_4 | exon | 9311377 | 9311502 | 9311377 | ID=Msa0489120-mRNA-1:exon:3084;Parent=Msa0489120-mRNA-1 |
| chr3_4 | exon | 9311600 | 9311656 | 9311600 | ID=Msa0489120-mRNA-1:exon:3085;Parent=Msa0489120-mRNA-1 |
| chr3_4 | exon | 9311927 | 9312028 | 9311927 | ID=Msa0489120-mRNA-1:exon:3086;Parent=Msa0489120-mRNA-1 |
| chr3_4 | exon | 9312191 | 9312268 | 9312191 | ID=Msa0489120-mRNA-1:exon:3087;Parent=Msa0489120-mRNA-1 |
| chr3_4 | exon | 9312411 | 9312480 | 9312411 | ID=Msa0489120-mRNA-1:exon:3088;Parent=Msa0489120-mRNA-1 |
| chr3_4 | exon | 9312579 | 9312649 | 9312579 | ID=Msa0489120-mRNA-1:exon:3089;Parent=Msa0489120-mRNA-1 |
| chr3_4 | exon | 9312751 | 9312843 | 9312751 | ID=Msa0489120-mRNA-1:exon:3090;Parent=Msa0489120-mRNA-1 |
| chr3_4 | exon | 9313013 | 9313528 | 9313013 | ID=Msa0489120-mRNA-1:exon:3091;Parent=Msa0489120-mRNA-1 |
| chr3_4 | five_prime_UTR | 9308644 | 9308822 | 9308644 | ID=Msa0489120-mRNA-1:five_prime_utr;Parent=Msa0489120-mRNA-1 |
| chr3_4 | five_prime_UTR | 9309011 | 9309082 | 9309011 | ID=Msa0489120-mRNA-1:five_prime_utr;Parent=Msa0489120-mRNA-1 |
| chr3_4 | five_prime_UTR | 9310333 | 9310343 | 9310333 | ID=Msa0489120-mRNA-1:five_prime_utr;Parent=Msa0489120-mRNA-1 |
| chr3_4 | CDS | 9310344 | 9310646 | 9310344 | ID=Msa0489120-mRNA-1:cds;Parent=Msa0489120-mRNA-1 |
| chr3_4 | CDS | 9310744 | 9310884 | 9310744 | ID=Msa0489120-mRNA-1:cds;Parent=Msa0489120-mRNA-1 |
| chr3_4 | CDS | 9310997 | 9311068 | 9310997 | ID=Msa0489120-mRNA-1:cds;Parent=Msa0489120-mRNA-1 |
| chr3_4 | CDS | 9311377 | 9311502 | 9311377 | ID=Msa0489120-mRNA-1:cds;Parent=Msa0489120-mRNA-1 |
| chr3_4 | CDS | 9311600 | 9311656 | 9311600 | ID=Msa0489120-mRNA-1:cds;Parent=Msa0489120-mRNA-1 |
| chr3_4 | CDS | 9311927 | 9312028 | 9311927 | ID=Msa0489120-mRNA-1:cds;Parent=Msa0489120-mRNA-1 |
| chr3_4 | CDS | 9312191 | 9312268 | 9312191 | ID=Msa0489120-mRNA-1:cds;Parent=Msa0489120-mRNA-1 |
| chr3_4 | CDS | 9312411 | 9312480 | 9312411 | ID=Msa0489120-mRNA-1:cds;Parent=Msa0489120-mRNA-1 |
| chr3_4 | CDS | 9312579 | 9312649 | 9312579 | ID=Msa0489120-mRNA-1:cds;Parent=Msa0489120-mRNA-1 |
| chr3_4 | CDS | 9312751 | 9312843 | 9312751 | ID=Msa0489120-mRNA-1:cds;Parent=Msa0489120-mRNA-1 |
| chr3_4 | CDS | 9313013 | 9313066 | 9313013 | ID=Msa0489120-mRNA-1:cds;Parent=Msa0489120-mRNA-1 |
| chr3_4 | three_prime_UTR | 9313067 | 9313528 | 9313067 | ID=Msa0489120-mRNA-1:three_prime_utr;Parent=Msa0489120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
