Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817710 | XP_003616589.2 | 98.795 | 332 | 4 | 0 | 1 | 332 | 1 | 332 | 0.0 | 680 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817710 | sp|Q9LY62|GMT1_ARATH | 67.372 | 331 | 100 | 4 | 3 | 332 | 11 | 334 | 2.10e-165 | 467 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817710 | G7KGW5 | 98.795 | 332 | 4 | 0 | 1 | 332 | 1 | 332 | 0.0 | 680 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001550 | Msa0817710 | -0.818597 | 1.804350e-52 | -8.615850e-47 |
| Msa0004480 | Msa0817710 | 0.813391 | 2.621525e-51 | -8.615850e-47 |
| Msa0005910 | Msa0817710 | 0.805489 | 1.302639e-49 | -8.615850e-47 |
| Msa0011050 | Msa0817710 | 0.806205 | 9.210102e-50 | -8.615850e-47 |
| Msa0027020 | Msa0817710 | -0.814579 | 1.433865e-51 | -8.615850e-47 |
| Msa0043850 | Msa0817710 | 0.805474 | 1.311654e-49 | -8.615850e-47 |
| Msa0058760 | Msa0817710 | 0.803309 | 3.707490e-49 | -8.615850e-47 |
| Msa0060710 | Msa0817710 | -0.842320 | 2.779323e-58 | -8.615850e-47 |
| Msa0069150 | Msa0817710 | -0.805937 | 1.048971e-49 | -8.615850e-47 |
| Msa0074860 | Msa0817710 | -0.801846 | 7.426339e-49 | -8.615850e-47 |
| Msa0082230 | Msa0817710 | 0.811226 | 7.782261e-51 | -8.615850e-47 |
| Msa0087550 | Msa0817710 | 0.825496 | 4.541387e-54 | -8.615850e-47 |
| Msa0094710 | Msa0817710 | 0.848271 | 6.818077e-60 | -8.615850e-47 |
| Msa0667670 | Msa0817710 | -0.813501 | 2.479387e-51 | -8.615850e-47 |
| Msa0686670 | Msa0817710 | 0.805721 | 1.164174e-49 | -8.615850e-47 |
| Msa0743510 | Msa0817710 | 0.821626 | 3.652907e-53 | -8.615850e-47 |
| Msa0753400 | Msa0817710 | 0.817147 | 3.834202e-52 | -8.615850e-47 |
| Msa0772280 | Msa0817710 | 0.800768 | 1.234258e-48 | -8.615850e-47 |
| Msa0784850 | Msa0817710 | 0.923938 | 1.371565e-89 | -8.615850e-47 |
| Msa0788450 | Msa0817710 | -0.808054 | 3.739800e-50 | -8.615850e-47 |
| Msa0810440 | Msa0817710 | 0.869972 | 2.073327e-66 | -8.615850e-47 |
| Msa0816630 | Msa0817710 | 0.811115 | 8.226036e-51 | -8.615850e-47 |
| Msa0817710 | Msa0825570 | -0.807725 | 4.392972e-50 | -8.615850e-47 |
| Msa0817710 | Msa0826540 | -0.807185 | 5.719730e-50 | -8.615850e-47 |
| Msa0817710 | Msa0829210 | -0.807741 | 4.359780e-50 | -8.615850e-47 |
| Msa0817710 | Msa0835050 | -0.800842 | 1.192112e-48 | -8.615850e-47 |
| Msa0817710 | Msa0858170 | 0.831393 | 1.712641e-55 | -8.615850e-47 |
| Msa0817710 | Msa0862620 | 0.802663 | 5.041081e-49 | -8.615850e-47 |
| Msa0817710 | Msa0864820 | -0.822564 | 2.214431e-53 | -8.615850e-47 |
| Msa0817710 | Msa0968470 | -0.843533 | 1.321966e-58 | -8.615850e-47 |
| Msa0817710 | Msa0984290 | 0.840266 | 9.641574e-58 | -8.615850e-47 |
| Msa0817710 | Msa1011250 | 0.847259 | 1.294662e-59 | -8.615850e-47 |
| Msa0817710 | Msa1016960 | 0.819918 | 9.024312e-53 | -8.615850e-47 |
| Msa0817710 | Msa1031460 | 0.851039 | 1.150647e-60 | -8.615850e-47 |
| Msa0817710 | Msa1041720 | 0.800879 | 1.171814e-48 | -8.615850e-47 |
| Msa0817710 | Msa1058200 | 0.803719 | 3.048156e-49 | -8.615850e-47 |
| Msa0817710 | Msa1062080 | 0.806412 | 8.329625e-50 | -8.615850e-47 |
| Msa0817710 | Msa1068380 | 0.851474 | 8.669442e-61 | -8.615850e-47 |
| Msa0817710 | Msa1070540 | 0.851762 | 7.186458e-61 | -8.615850e-47 |
| Msa0817710 | Msa1074210 | 0.800076 | 1.707373e-48 | -8.615850e-47 |
| Msa0817710 | Msa1101240 | 0.853833 | 1.839772e-61 | -8.615850e-47 |
| Msa0817710 | Msa1114680 | 0.828272 | 9.859641e-55 | -8.615850e-47 |
| Msa0817710 | Msa1121300 | 0.848288 | 6.744541e-60 | -8.615850e-47 |
| Msa0817710 | Msa1131090 | 0.821338 | 4.256835e-53 | -8.615850e-47 |
| Msa0817710 | Msa1156490 | 0.832335 | 1.002232e-55 | -8.615850e-47 |
| Msa0817710 | Msa1168050 | -0.814343 | 1.616582e-51 | -8.615850e-47 |
| Msa0817710 | Msa1180930 | 0.819556 | 1.091324e-52 | -8.615850e-47 |
| Msa0817710 | Msa1183140 | 0.802435 | 5.617856e-49 | -8.615850e-47 |
| Msa0817710 | Msa1184100 | -0.802605 | 5.181771e-49 | -8.615850e-47 |
| Msa0817710 | Msa1204350 | 0.822861 | 1.888388e-53 | -8.615850e-47 |
| Msa0817710 | Msa1208450 | -0.864383 | 1.265056e-64 | -8.615850e-47 |
| Msa0817710 | Msa1208990 | 0.843053 | 1.775120e-58 | -8.615850e-47 |
| Msa0817710 | Msa1217260 | 0.832294 | 1.026091e-55 | -8.615850e-47 |
| Msa0817710 | Msa1228260 | -0.818973 | 1.481848e-52 | -8.615850e-47 |
| Msa0817710 | Msa1237890 | 0.807036 | 6.149118e-50 | -8.615850e-47 |
| Msa0817710 | Msa1268230 | 0.825250 | 5.192100e-54 | -8.615850e-47 |
| Msa0817710 | Msa1271220 | -0.821192 | 4.600225e-53 | -8.615850e-47 |
| Msa0817710 | Msa1298390 | -0.844181 | 8.861455e-59 | -8.615850e-47 |
| Msa0817710 | Msa1308430 | -0.814766 | 1.303685e-51 | -8.615850e-47 |
| Msa0817710 | Msa1309760 | 0.812401 | 4.318988e-51 | -8.615850e-47 |
| Msa0817710 | Msa1315880 | -0.803017 | 4.260251e-49 | -8.615850e-47 |
| Msa0817710 | Msa1318550 | 0.802742 | 4.855394e-49 | -8.615850e-47 |
| Msa0817710 | Msa1328240 | 0.828764 | 7.497811e-55 | -8.615850e-47 |
| Msa0817710 | Msa1329900 | 0.813080 | 3.067527e-51 | -8.615850e-47 |
| Msa0817710 | Msa1333090 | 0.800230 | 1.588832e-48 | -8.615850e-47 |
| Msa0817710 | Msa1341850 | -0.830117 | 3.518481e-55 | -8.615850e-47 |
| Msa0817710 | Msa1350590 | -0.815621 | 8.418814e-52 | -8.615850e-47 |
| Msa0817710 | Msa1350700 | 0.820721 | 5.905246e-53 | -8.615850e-47 |
| Msa0817710 | Msa1360260 | 0.816451 | 5.493283e-52 | -8.615850e-47 |
| Msa0817710 | Msa1372460 | -0.800489 | 1.406853e-48 | -8.615850e-47 |
| Msa0817710 | Msa1376550 | -0.817117 | 3.894663e-52 | -8.615850e-47 |
| Msa0817710 | Msa1379020 | 0.878231 | 3.319626e-69 | -8.615850e-47 |
| Msa0817710 | Msa1388690 | 0.800179 | 1.627002e-48 | -8.615850e-47 |
| Msa0817710 | Msa1407880 | 0.865360 | 6.249625e-65 | -8.615850e-47 |
| Msa0817710 | Msa1434860 | -0.800166 | 1.637363e-48 | -8.615850e-47 |
| Msa0817710 | Msa1465860 | 0.814273 | 1.675628e-51 | -8.615850e-47 |
| Msa0134270 | Msa0817710 | 0.808491 | 3.017417e-50 | -8.615850e-47 |
| Msa0137980 | Msa0817710 | 0.807457 | 5.008545e-50 | -8.615850e-47 |
| Msa0147790 | Msa0817710 | 0.822481 | 2.315470e-53 | -8.615850e-47 |
| Msa0151220 | Msa0817710 | 0.805856 | 1.090671e-49 | -8.615850e-47 |
| Msa0167160 | Msa0817710 | -0.812714 | 3.689987e-51 | -8.615850e-47 |
| Msa0174100 | Msa0817710 | 0.803167 | 3.966290e-49 | -8.615850e-47 |
| Msa0174820 | Msa0817710 | 0.821328 | 4.279682e-53 | -8.615850e-47 |
| Msa0372570 | Msa0817710 | -0.812501 | 4.107500e-51 | -8.615850e-47 |
| Msa0380400 | Msa0817710 | -0.822786 | 1.966479e-53 | -8.615850e-47 |
| Msa0403470 | Msa0817710 | -0.842729 | 2.164370e-58 | -8.615850e-47 |
| Msa0427310 | Msa0817710 | 0.839538 | 1.492393e-57 | -8.615850e-47 |
| Msa0428200 | Msa0817710 | 0.824606 | 7.367447e-54 | -8.615850e-47 |
| Msa0462450 | Msa0817710 | 0.857432 | 1.638906e-62 | -8.615850e-47 |
| Msa0473810 | Msa0817710 | 0.840117 | 1.054860e-57 | -8.615850e-47 |
| Msa0474560 | Msa0817710 | 0.852573 | 4.224846e-61 | -8.615850e-47 |
| Msa0476170 | Msa0817710 | -0.811903 | 5.547582e-51 | -8.615850e-47 |
| Msa0476890 | Msa0817710 | -0.809585 | 1.759240e-50 | -8.615850e-47 |
| Msa0266220 | Msa0817710 | 0.819543 | 1.099229e-52 | -8.615850e-47 |
| Msa0287680 | Msa0817710 | 0.802629 | 5.124960e-49 | -8.615850e-47 |
| Msa0310270 | Msa0817710 | -0.804801 | 1.814839e-49 | -8.615850e-47 |
| Msa0512950 | Msa0817710 | -0.835194 | 1.934093e-56 | -8.615850e-47 |
| Msa0517990 | Msa0817710 | 0.842152 | 3.078055e-58 | -8.615850e-47 |
| Msa0584600 | Msa0817710 | 0.805383 | 1.370948e-49 | -8.615850e-47 |
| Msa0588590 | Msa0817710 | 0.823243 | 1.538484e-53 | -8.615850e-47 |
| Msa0588620 | Msa0817710 | 0.802487 | 5.481351e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817710 | MtrunA17_Chr5g0436731 | 98.795 | 332 | 4 | 0 | 1 | 332 | 1 | 332 | 0.0 | 680 |
| Msa0817710 | MtrunA17_Chr1g0197731 | 33.193 | 238 | 131 | 6 | 85 | 314 | 538 | 755 | 1.13e-28 | 116 |
| Msa0817710 | MtrunA17_Chr1g0147601 | 30.556 | 288 | 165 | 10 | 56 | 326 | 62 | 331 | 6.09e-28 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817710 | AT3G55830.1 | 67.372 | 331 | 100 | 4 | 3 | 332 | 11 | 334 | 2.14e-166 | 467 |
| Msa0817710 | AT5G04500.1 | 30.000 | 240 | 136 | 6 | 85 | 314 | 532 | 749 | 9.78e-29 | 117 |
| Msa0817710 | AT1G80290.1 | 31.022 | 274 | 157 | 9 | 73 | 326 | 49 | 310 | 1.14e-21 | 94.4 |
| Msa0817710 | AT1G80290.2 | 31.022 | 274 | 157 | 9 | 73 | 326 | 57 | 318 | 1.38e-21 | 94.0 |
Find 106 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCGGAGTTGAGAGATTT+TGG | 0.210920 | 5_3:-53104565 | None:intergenic |
| TAATAGATTTAAAGAAATTA+AGG | 0.224224 | 5_3:+53106680 | Msa0817710:CDS |
| ATTTAAAGAAATTAAGGATT+TGG | 0.259132 | 5_3:+53106686 | Msa0817710:CDS |
| CTGGTTCAAGTTTCTTATTA+TGG | 0.259686 | 5_3:+53105017 | Msa0817710:CDS |
| TTTATTGCCGTTTGATTGAT+TGG | 0.294893 | 5_3:-53104645 | None:intergenic |
| CCTAAGGAATTTGCTAAATC+AGG | 0.302144 | 5_3:-53109145 | None:intergenic |
| GAACCTTGAATCAGTGAAAC+TGG | 0.317353 | 5_3:-53105068 | None:intergenic |
| ATCAACTGGAATTAGTAGTT+TGG | 0.324045 | 5_3:+53108825 | Msa0817710:CDS |
| CTTGATCTTGGCTGATTTAA+CGG | 0.328719 | 5_3:-53104945 | None:intergenic |
| TAATATTGAATTGTAATCTA+AGG | 0.330191 | 5_3:+53109179 | Msa0817710:three_prime_UTR |
| TGGAATTCGCATTTGATGTT+TGG | 0.335175 | 5_3:+53106763 | Msa0817710:CDS |
| ATATCGTCCGTCTCTAGATT+TGG | 0.345844 | 5_3:-53106616 | None:intergenic |
| CGTGTCTTGGATCATGAAAA+TGG | 0.357281 | 5_3:-53104738 | None:intergenic |
| AACCTATTTACTTCTGTGTA+TGG | 0.359210 | 5_3:+53108880 | Msa0817710:CDS |
| ATATATGAGATTGGATCAAC+TGG | 0.362340 | 5_3:+53108811 | Msa0817710:CDS |
| AATTACCTTTAACCCATAAC+GGG | 0.378032 | 5_3:-53107831 | None:intergenic |
| TAGTTATGTGTTTGGAATGA+AGG | 0.379858 | 5_3:-53104493 | None:intergenic |
| TCAACTGGAATTAGTAGTTT+GGG | 0.396190 | 5_3:+53108826 | Msa0817710:CDS |
| CTAAGGCAGCATCCTCTGTT+AGG | 0.396730 | 5_3:+53109196 | Msa0817710:three_prime_UTR |
| GAGAATTTGTAACTAAGAAC+AGG | 0.400975 | 5_3:+53107637 | Msa0817710:CDS |
| GCCCATACACAGAAGTAAAT+AGG | 0.401306 | 5_3:-53108882 | None:intergenic |
| AGACTTTCTGATGGAGGATT+GGG | 0.401771 | 5_3:-53106564 | None:intergenic |
| TTTCTTGTCGCAAATGCAAC+TGG | 0.403236 | 5_3:+53107802 | Msa0817710:CDS |
| TGGTGGTCTGTGTGGTGGAC+GGG | 0.410126 | 5_3:+53107528 | Msa0817710:CDS |
| AAGACTTTCTGATGGAGGAT+TGG | 0.418259 | 5_3:-53106565 | None:intergenic |
| ATTTGATTGTAGAATATTGA+AGG | 0.420517 | 5_3:+53109244 | Msa0817710:three_prime_UTR |
| GTCGGATTGAACAGAGGTTT+CGG | 0.421732 | 5_3:+53104906 | Msa0817710:CDS |
| CCTGATTTAGCAAATTCCTT+AGG | 0.422121 | 5_3:+53109145 | Msa0817710:three_prime_UTR |
| AAATTACCTTTAACCCATAA+CGG | 0.425637 | 5_3:-53107832 | None:intergenic |
| TGCGAATTCCACCGAAGAGC+AGG | 0.435917 | 5_3:-53106751 | None:intergenic |
| TTCTGATCCAATCAATCAAA+CGG | 0.436471 | 5_3:+53104638 | Msa0817710:five_prime_UTR |
| GAAGCTCCGGTTCGAAATGA+AGG | 0.448999 | 5_3:+53104782 | Msa0817710:five_prime_UTR |
| AAATAACAGAAGCTTGATCT+TGG | 0.452251 | 5_3:-53104957 | None:intergenic |
| ATAGTCGCAATGTCTGGTTT+TGG | 0.454922 | 5_3:+53108941 | Msa0817710:CDS |
| TGTCCATTGGTTAGATTCGT+TGG | 0.458659 | 5_3:+53106824 | Msa0817710:CDS |
| ACAGGTAAAATATATGAGAT+TGG | 0.461138 | 5_3:+53108802 | Msa0817710:intron |
| GACAACAACAAATTTAGATA+TGG | 0.462661 | 5_3:+53107501 | Msa0817710:CDS |
| ATGGTGGTCTGTGTGGTGGA+CGG | 0.464395 | 5_3:+53107527 | Msa0817710:CDS |
| TGTCATATTTCCCTGCTCTT+CGG | 0.466320 | 5_3:+53106740 | Msa0817710:CDS |
| TTTCACTGACGTATATACTA+AGG | 0.468030 | 5_3:-53108911 | None:intergenic |
| CCGTTGATAGTCGCAATGTC+TGG | 0.468930 | 5_3:+53108935 | Msa0817710:CDS |
| TTCCCAGTTTCACTGATTCA+AGG | 0.472796 | 5_3:+53105065 | Msa0817710:CDS |
| ACAAATTCTCTAATTGATGA+TGG | 0.477812 | 5_3:-53107624 | None:intergenic |
| GTTGATGCACGCAATATGAA+TGG | 0.489426 | 5_3:-53104543 | None:intergenic |
| TTTGTGAAAGAATGCTGCCT+TGG | 0.491658 | 5_3:-53107571 | None:intergenic |
| AGAAAACCTTCATTTCGAAC+CGG | 0.493120 | 5_3:-53104788 | None:intergenic |
| ACCTATTTACTTCTGTGTAT+GGG | 0.504941 | 5_3:+53108881 | Msa0817710:CDS |
| ACAAATCCCACCATTGCATC+CGG | 0.508793 | 5_3:-53106795 | None:intergenic |
| TCAGTGAAACTGGGAATTTG+AGG | 0.510055 | 5_3:-53105058 | None:intergenic |
| GGTTCGTTACTGAACCGAAC+CGG | 0.512638 | 5_3:+53104812 | Msa0817710:five_prime_UTR |
| CTTAAACTAATCAGAAGCTC+CGG | 0.521536 | 5_3:+53104769 | Msa0817710:five_prime_UTR |
| CATATTTCCCTGCTCTTCGG+TGG | 0.522551 | 5_3:+53106743 | Msa0817710:CDS |
| AATGAAGAAACAGAGGAAGA+TGG | 0.522661 | 5_3:-53104615 | None:intergenic |
| GATTTGTACCTCGTGTCCAT+TGG | 0.522707 | 5_3:+53106811 | Msa0817710:CDS |
| TGATGTTTGGCAAAGTGCAC+CGG | 0.530100 | 5_3:+53106776 | Msa0817710:CDS |
| GGAGCTGTTGGTTGAACCGT+CGG | 0.530590 | 5_3:+53104888 | Msa0817710:CDS |
| TGGTTAAGGAGACATGAATC+AGG | 0.532444 | 5_3:-53104690 | None:intergenic |
| CAGTGAAACTGGGAATTTGA+GGG | 0.535082 | 5_3:-53105057 | None:intergenic |
| TTGGATCATGAAAATGGAAG+AGG | 0.538581 | 5_3:-53104732 | None:intergenic |
| AACAACAAATTTAGATATGG+TGG | 0.541211 | 5_3:+53107504 | Msa0817710:CDS |
| AAGTGCACCGGATGCAATGG+TGG | 0.544682 | 5_3:+53106788 | Msa0817710:CDS |
| TGTGTTTGGAATGAAGGAGA+GGG | 0.545745 | 5_3:-53104487 | None:intergenic |
| CTAAGGAATTTGCTAAATCA+GGG | 0.554337 | 5_3:-53109144 | None:intergenic |
| TTTAGAAGACTTTCTGATGG+AGG | 0.564085 | 5_3:-53106570 | None:intergenic |
| CCAGACATTGCGACTATCAA+CGG | 0.564873 | 5_3:-53108935 | None:intergenic |
| ATGGTGGATGGTGGTCTGTG+TGG | 0.564923 | 5_3:+53107520 | Msa0817710:CDS |
| GTGGATGGTGGTCTGTGTGG+TGG | 0.565684 | 5_3:+53107523 | Msa0817710:CDS |
| ATGTGTTTGGAATGAAGGAG+AGG | 0.584204 | 5_3:-53104488 | None:intergenic |
| TATTAGCGGCGGTGATGAGA+GGG | 0.584371 | 5_3:+53104867 | Msa0817710:exon |
| ACGGACGATATGTGAAGTTG+AGG | 0.586320 | 5_3:+53106628 | Msa0817710:CDS |
| CGGTGATGAGAGGGAGCTGT+TGG | 0.589133 | 5_3:+53104876 | Msa0817710:exon |
| TTATTAGCGGCGGTGATGAG+AGG | 0.597155 | 5_3:+53104866 | Msa0817710:exon |
| TTCACTGACGTATATACTAA+GGG | 0.597837 | 5_3:-53108910 | None:intergenic |
| AGGAGACATGAATCAGGTGA+TGG | 0.598172 | 5_3:-53104684 | None:intergenic |
| ACAAATTTAGATATGGTGGA+TGG | 0.602492 | 5_3:+53107508 | Msa0817710:CDS |
| TATTACAAGAAATCAACCTA+AGG | 0.609014 | 5_3:-53109161 | None:intergenic |
| ATACCAACGAATCTAACCAA+TGG | 0.611009 | 5_3:-53106827 | None:intergenic |
| ATATAGCATGGTGCTCTCCA+AGG | 0.616926 | 5_3:+53107554 | Msa0817710:CDS |
| GCGAATTCCACCGAAGAGCA+GGG | 0.618715 | 5_3:-53106750 | None:intergenic |
| ATCAGAAAATGAAGAAACAG+AGG | 0.621868 | 5_3:-53104622 | None:intergenic |
| GTTTGGGAGGTCATAGTGAA+CGG | 0.624381 | 5_3:+53108842 | Msa0817710:CDS |
| TTTGGAATGAAGGAGAGGGA+AGG | 0.626473 | 5_3:-53104483 | None:intergenic |
| TATTTACTTCTGTGTATGGG+CGG | 0.627886 | 5_3:+53108884 | Msa0817710:CDS |
| TTGAGTCAGTACATATTGTG+TGG | 0.629828 | 5_3:+53106535 | Msa0817710:CDS |
| AACCTTGAATCAGTGAAACT+GGG | 0.631242 | 5_3:-53105067 | None:intergenic |
| ACTGGAATTAGTAGTTTGGG+AGG | 0.632754 | 5_3:+53108829 | Msa0817710:CDS |
| GCAAAGTGCACCGGATGCAA+TGG | 0.638093 | 5_3:+53106785 | Msa0817710:CDS |
| ATTACCTTTAACCCATAACG+GGG | 0.639745 | 5_3:-53107830 | None:intergenic |
| AGTGCACCGGATGCAATGGT+GGG | 0.640002 | 5_3:+53106789 | Msa0817710:CDS |
| TAAACAATAATTGACAACAG+TGG | 0.650312 | 5_3:-53109004 | None:intergenic |
| AATTTAGATATGGTGGATGG+TGG | 0.653603 | 5_3:+53107511 | Msa0817710:CDS |
| ATAAATGACTAACGTGAACG+TGG | 0.664051 | 5_3:-53109078 | None:intergenic |
| GATCTTGGCTGATTTAACGG+TGG | 0.667058 | 5_3:-53104942 | None:intergenic |
| GGTGATGGATGACACGTGGA+TGG | 0.668912 | 5_3:-53104669 | None:intergenic |
| TGAACCGTCGGATTGAACAG+AGG | 0.670462 | 5_3:+53104900 | Msa0817710:CDS |
| ATATGTACTGACTCAAGTCG+AGG | 0.675049 | 5_3:-53106528 | None:intergenic |
| AGTGAAACTGGGAATTTGAG+GGG | 0.676257 | 5_3:-53105056 | None:intergenic |
| GTAAAGTCCAAATCTAGAGA+CGG | 0.683801 | 5_3:+53106609 | Msa0817710:CDS |
| GAAACCTCTGTTCAATCCGA+CGG | 0.684402 | 5_3:-53104904 | None:intergenic |
| ATCAGGTGATGGATGACACG+TGG | 0.707701 | 5_3:-53104673 | None:intergenic |
| GAATCTAACCAATGGACACG+AGG | 0.709906 | 5_3:-53106819 | None:intergenic |
| ATTCTATTGTAATGAACACG+TGG | 0.719028 | 5_3:+53106457 | Msa0817710:CDS |
| GTTGAGGTTTGATATCAACA+CGG | 0.722201 | 5_3:+53106644 | Msa0817710:CDS |
| TTACCTTTAACCCATAACGG+GGG | 0.745725 | 5_3:-53107829 | None:intergenic |
| GTGGACGGGTACATATAGCA+TGG | 0.778264 | 5_3:+53107542 | Msa0817710:CDS |
| TAGATTTGGACTTTACAACG+TGG | 0.788272 | 5_3:-53106602 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAAAAAACAAAAC+CGG | - | chr5_3:53104834-53104853 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTAGATTTTGT+TGG | + | chr5_3:53104842-53104861 | Msa0817710:five_prime_UTR | 10.0% |
| !!! | GAAAATACAAAATTTATTTT+TGG | + | chr5_3:53105236-53105255 | Msa0817710:intron | 10.0% |
| !! | TTATGTTTAGTATTTAAATT+TGG | + | chr5_3:53105509-53105528 | Msa0817710:intron | 10.0% |
| !! | TAATAGATTTAAAGAAATTA+AGG | + | chr5_3:53106680-53106699 | Msa0817710:CDS | 10.0% |
| !! | AAAAAAAAAAAAAACTTGTA+AGG | + | chr5_3:53107440-53107459 | Msa0817710:intron | 10.0% |
| !! | AAATAAATAAAAAATTAGCA+GGG | - | chr5_3:53107685-53107704 | None:intergenic | 10.0% |
| !! | TAAATAAATAAAAAATTAGC+AGG | - | chr5_3:53107686-53107705 | None:intergenic | 10.0% |
| !! | ATATGTTTATCTTATAATTA+AGG | + | chr5_3:53108355-53108374 | Msa0817710:intron | 10.0% |
| !!! | AATTTTTATAGTTATGTGTT+TGG | - | chr5_3:53104504-53104523 | None:intergenic | 15.0% |
| !!! | TCATTAACTTTTTTTTGAAT+CGG | - | chr5_3:53105162-53105181 | None:intergenic | 15.0% |
| !!! | AATACAAAATTTATTTTTGG+TGG | + | chr5_3:53105239-53105258 | Msa0817710:intron | 15.0% |
| !!! | ATACAAAATTTATTTTTGGT+GGG | + | chr5_3:53105240-53105259 | Msa0817710:intron | 15.0% |
| !! | ATAGGAAATATAAATAGAAA+GGG | + | chr5_3:53105401-53105420 | Msa0817710:intron | 15.0% |
| !!! | TTTAATTTGAAGAGTAAAAT+AGG | + | chr5_3:53105476-53105495 | Msa0817710:intron | 15.0% |
| !!! | TTAATTTGAAGAGTAAAATA+GGG | + | chr5_3:53105477-53105496 | Msa0817710:intron | 15.0% |
| !! | GAAGTGAATTTATATATATT+TGG | + | chr5_3:53106026-53106045 | Msa0817710:intron | 15.0% |
| !! | AAAAAAATTTACATTGAACT+TGG | - | chr5_3:53106069-53106088 | None:intergenic | 15.0% |
| !! | GTAAAAAAAAATTAGATGTT+TGG | - | chr5_3:53106178-53106197 | None:intergenic | 15.0% |
| !! | ATTTAAAGAAATTAAGGATT+TGG | + | chr5_3:53106686-53106705 | Msa0817710:CDS | 15.0% |
| !! | AATAAATAAAAAATTAGCAG+GGG | - | chr5_3:53107684-53107703 | None:intergenic | 15.0% |
| !! | TTATTGATCAAATAACAAAA+TGG | - | chr5_3:53107740-53107759 | None:intergenic | 15.0% |
| !!! | TGTATCTTTTAATTATTGAA+CGG | + | chr5_3:53107863-53107882 | Msa0817710:intron | 15.0% |
| !! | TAATATTGAATTGTAATCTA+AGG | + | chr5_3:53109179-53109198 | Msa0817710:three_prime_UTR | 15.0% |
| !!! | AGTTTTGTAGTTTCTATTTT+AGG | + | chr5_3:53105194-53105213 | Msa0817710:intron | 20.0% |
| !!! | GTTTTGTAGTTTCTATTTTA+GGG | + | chr5_3:53105195-53105214 | Msa0817710:intron | 20.0% |
| !!! | CAAAGTTTTGGTTTTTTTTA+TGG | + | chr5_3:53105304-53105323 | Msa0817710:intron | 20.0% |
| !! | GAATTTCTATATATGTGTTT+GGG | + | chr5_3:53105326-53105345 | Msa0817710:intron | 20.0% |
| !!! | TTTTTTTGTTTGTTTTGCAT+AGG | + | chr5_3:53105383-53105402 | Msa0817710:intron | 20.0% |
| !! | CATAGGAAATATAAATAGAA+AGG | + | chr5_3:53105400-53105419 | Msa0817710:intron | 20.0% |
| !!! | AAGGGATTTTGTATATAATA+AGG | + | chr5_3:53105419-53105438 | Msa0817710:intron | 20.0% |
| !!! | TTTGGAATGAATATATAACA+AGG | + | chr5_3:53105527-53105546 | Msa0817710:intron | 20.0% |
| !!! | GTCATTTTCTCAAATATTAT+TGG | + | chr5_3:53105707-53105726 | Msa0817710:intron | 20.0% |
| !!! | TTTTGTTCAAATTTGTATAC+TGG | + | chr5_3:53105813-53105832 | Msa0817710:intron | 20.0% |
| !! | TGATTATGTATGATTTGATT+TGG | + | chr5_3:53105989-53106008 | Msa0817710:intron | 20.0% |
| !! | TAACAATAAGAGATAAAAAG+TGG | - | chr5_3:53106114-53106133 | None:intergenic | 20.0% |
| !! | TTAAAAGGTAAATACTATTG+GGG | - | chr5_3:53107081-53107100 | None:intergenic | 20.0% |
| !! | CTTAAAAGGTAAATACTATT+GGG | - | chr5_3:53107082-53107101 | None:intergenic | 20.0% |
| !! | TCTTAAAAGGTAAATACTAT+TGG | - | chr5_3:53107083-53107102 | None:intergenic | 20.0% |
| !!! | TTTCATGCTTAATTTTGAAA+TGG | - | chr5_3:53107161-53107180 | None:intergenic | 20.0% |
| !!! | AAAATAGCACATTTTGTATA+TGG | + | chr5_3:53107202-53107221 | Msa0817710:intron | 20.0% |
| !! | ATAAATAAAAAATTAGCAGG+GGG | - | chr5_3:53107683-53107702 | None:intergenic | 20.0% |
| !! | AATAATTCAAATGATTTACC+AGG | + | chr5_3:53107755-53107774 | Msa0817710:intron | 20.0% |
| !!! | GTATCTTTTAATTATTGAAC+GGG | + | chr5_3:53107864-53107883 | Msa0817710:intron | 20.0% |
| !!! | ACATTTGTAAGATTGATTTA+TGG | + | chr5_3:53107994-53108013 | Msa0817710:intron | 20.0% |
| !! | TAATTAAGGAAGTTAAAGTA+TGG | + | chr5_3:53108369-53108388 | Msa0817710:intron | 20.0% |
| !! | GGTTTCAAAAATAAATTTCA+TGG | - | chr5_3:53108501-53108520 | None:intergenic | 20.0% |
| !! | TATATATGATGTTTACATTG+TGG | + | chr5_3:53108765-53108784 | Msa0817710:intron | 20.0% |
| !!! | ATATATTTTACCTGTAACAA+AGG | - | chr5_3:53108797-53108816 | None:intergenic | 20.0% |
| !! | ATTTGATTGTAGAATATTGA+AGG | + | chr5_3:53109244-53109263 | Msa0817710:three_prime_UTR | 20.0% |
| !! | TTAAGATTTTAAACGTGTCT+TGG | - | chr5_3:53104754-53104773 | None:intergenic | 25.0% |
| ! | AAAAAAAAACAAAACCGGTT+CGG | - | chr5_3:53104829-53104848 | None:intergenic | 25.0% |
| !!! | AGATTTTGTTGGTTTATTAG+CGG | + | chr5_3:53104853-53104872 | Msa0817710:five_prime_UTR | 25.0% |
| !!! | TGGAAATGTTTTTTTGTTGT+TGG | + | chr5_3:53105274-53105293 | Msa0817710:intron | 25.0% |
| !! | GTTGGAAAAATACAAAGTTT+TGG | + | chr5_3:53105292-53105311 | Msa0817710:intron | 25.0% |
| ! | GGAATTTCTATATATGTGTT+TGG | + | chr5_3:53105325-53105344 | Msa0817710:intron | 25.0% |
| ! | TGTAATTATATGTGTCATGT+TGG | - | chr5_3:53105678-53105697 | None:intergenic | 25.0% |
| ! | ATATCTATGAAGCATAGATA+CGG | - | chr5_3:53105762-53105781 | None:intergenic | 25.0% |
| ! | CCAAAAAAAATTAAAAGTCC+AGG | - | chr5_3:53105854-53105873 | None:intergenic | 25.0% |
| !!! | CCTGGACTTTTAATTTTTTT+TGG | + | chr5_3:53105851-53105870 | Msa0817710:intron | 25.0% |
| !! | TGGATAATTTAGTGTGTTTT+TGG | + | chr5_3:53105934-53105953 | Msa0817710:intron | 25.0% |
| ! | GTTTAAATTCATGATTGAGA+GGG | - | chr5_3:53106236-53106255 | None:intergenic | 25.0% |
| ! | TGTTTAAATTCATGATTGAG+AGG | - | chr5_3:53106237-53106256 | None:intergenic | 25.0% |
| ! | TCTCAATCATGAATTTAAAC+AGG | + | chr5_3:53106236-53106255 | Msa0817710:intron | 25.0% |
| !! | ATAAACAACAATTAGTTCTC+TGG | - | chr5_3:53106416-53106435 | None:intergenic | 25.0% |
| !!! | TATTTTAGAAGACTTTCTGA+TGG | - | chr5_3:53106576-53106595 | None:intergenic | 25.0% |
| ! | TCAAGGATAATTGAAAATCA+TGG | - | chr5_3:53106882-53106901 | None:intergenic | 25.0% |
| ! | AATGTGTAGTCAAAATATCA+AGG | - | chr5_3:53106899-53106918 | None:intergenic | 25.0% |
| ! | TGTGAATAACTAATTAAGCT+TGG | + | chr5_3:53106964-53106983 | Msa0817710:intron | 25.0% |
| ! | TTGCAAAACTACATCTTAAA+AGG | - | chr5_3:53107096-53107115 | None:intergenic | 25.0% |
| !!! | TTTGTTGTTTTATGGCAATA+AGG | - | chr5_3:53107184-53107203 | None:intergenic | 25.0% |
| !!! | GTGCTATTTTTGTTGTTTTA+TGG | - | chr5_3:53107192-53107211 | None:intergenic | 25.0% |
| ! | GACAACAACAAATTTAGATA+TGG | + | chr5_3:53107501-53107520 | Msa0817710:CDS | 25.0% |
| ! | AACAACAAATTTAGATATGG+TGG | + | chr5_3:53107504-53107523 | Msa0817710:CDS | 25.0% |
| ! | ACAAATTCTCTAATTGATGA+TGG | - | chr5_3:53107627-53107646 | None:intergenic | 25.0% |
| ! | TGATCAAATAACAAAATGGT+TGG | - | chr5_3:53107736-53107755 | None:intergenic | 25.0% |
| ! | AAATTACCTTTAACCCATAA+CGG | - | chr5_3:53107835-53107854 | None:intergenic | 25.0% |
| ! | ACTAATCATGTATCATTCAT+TGG | - | chr5_3:53108027-53108046 | None:intergenic | 25.0% |
| ! | TGAATGATACATGATTAGTA+TGG | + | chr5_3:53108028-53108047 | Msa0817710:intron | 25.0% |
| ! | CAATGAAGAATATGAAAATG+TGG | - | chr5_3:53108076-53108095 | None:intergenic | 25.0% |
| !! | CACATTTTCATATTCTTCAT+TGG | + | chr5_3:53108074-53108093 | Msa0817710:intron | 25.0% |
| ! | AAAGTTATAGCAATAGCAAA+AGG | + | chr5_3:53108196-53108215 | Msa0817710:intron | 25.0% |
| !! | TATCGTGATTTCATTTGTTT+TGG | + | chr5_3:53108459-53108478 | Msa0817710:intron | 25.0% |
| !!! | TTGATTTGTATTACCATGAT+GGG | - | chr5_3:53108642-53108661 | None:intergenic | 25.0% |
| !!! | TTTGATTTGTATTACCATGA+TGG | - | chr5_3:53108643-53108662 | None:intergenic | 25.0% |
| ! | ACAGGTAAAATATATGAGAT+TGG | + | chr5_3:53108802-53108821 | Msa0817710:intron | 25.0% |
| ! | TGGAATATCTAAAAATGCAA+TGG | - | chr5_3:53108987-53109006 | None:intergenic | 25.0% |
| ! | TAAACAATAATTGACAACAG+TGG | - | chr5_3:53109007-53109026 | None:intergenic | 25.0% |
| !!! | TATACACAATTCTTGCTTTT+TGG | + | chr5_3:53109121-53109140 | Msa0817710:three_prime_UTR | 25.0% |
| ! | TATTACAAGAAATCAACCTA+AGG | - | chr5_3:53109164-53109183 | None:intergenic | 25.0% |
| ! | TAGTTATGTGTTTGGAATGA+AGG | - | chr5_3:53104496-53104515 | None:intergenic | 30.0% |
| ATCAGAAAATGAAGAAACAG+AGG | - | chr5_3:53104625-53104644 | None:intergenic | 30.0% | |
| TTCTGATCCAATCAATCAAA+CGG | + | chr5_3:53104638-53104657 | Msa0817710:five_prime_UTR | 30.0% | |
| ! | TTTATTGCCGTTTGATTGAT+TGG | - | chr5_3:53104648-53104667 | None:intergenic | 30.0% |
| !!! | TTTGTTTTCGTTGATGGTTA+AGG | - | chr5_3:53104707-53104726 | None:intergenic | 30.0% |
| AAATAACAGAAGCTTGATCT+TGG | - | chr5_3:53104960-53104979 | None:intergenic | 30.0% | |
| ! | CTGGTTCAAGTTTCTTATTA+TGG | + | chr5_3:53105017-53105036 | Msa0817710:CDS | 30.0% |
| ! | TTTGGTGGGAAATTCTTTTA+TGG | + | chr5_3:53105254-53105273 | Msa0817710:intron | 30.0% |
| !! | GTTTTATTGCCTTGATTTGA+AGG | + | chr5_3:53105441-53105460 | Msa0817710:intron | 30.0% |
| TGAAGAGTAAAATAGGGAAA+TGG | + | chr5_3:53105483-53105502 | Msa0817710:intron | 30.0% | |
| ! | TATAGATTGTAACGAGCTTT+TGG | + | chr5_3:53105564-53105583 | Msa0817710:intron | 30.0% |
| TATGAAGCATATATACTCCT+CGG | + | chr5_3:53105611-53105630 | Msa0817710:intron | 30.0% | |
| AGTGATCATTTGATCAACTA+CGG | + | chr5_3:53105885-53105904 | Msa0817710:intron | 30.0% | |
| TTACATTGAACTTGGTTTCA+GGG | - | chr5_3:53106061-53106080 | None:intergenic | 30.0% | |
| TTTACATTGAACTTGGTTTC+AGG | - | chr5_3:53106062-53106081 | None:intergenic | 30.0% | |
| AGAGATAAAAAGTGGATCTT+GGG | - | chr5_3:53106106-53106125 | None:intergenic | 30.0% | |
| AAGAGATAAAAAGTGGATCT+TGG | - | chr5_3:53106107-53106126 | None:intergenic | 30.0% | |
| !!! | TTTTATTTTCATGAGTGCTG+AGG | + | chr5_3:53106373-53106392 | Msa0817710:intron | 30.0% |
| GTTGTTTATTCTTTGTTCAC+AGG | + | chr5_3:53106427-53106446 | Msa0817710:intron | 30.0% | |
| TTATTCTTTGTTCACAGGAA+AGG | + | chr5_3:53106432-53106451 | Msa0817710:intron | 30.0% | |
| ATTCTATTGTAATGAACACG+TGG | + | chr5_3:53106457-53106476 | Msa0817710:CDS | 30.0% | |
| GTAAATACTATTGGGGATTA+TGG | - | chr5_3:53107074-53107093 | None:intergenic | 30.0% | |
| GCATACTATTGTGAAACATA+TGG | + | chr5_3:53107126-53107145 | Msa0817710:intron | 30.0% | |
| TGCAAGAACATTGAATAACT+TGG | - | chr5_3:53107474-53107493 | None:intergenic | 30.0% | |
| TATTCAATGTTCTTGCAGAA+TGG | + | chr5_3:53107477-53107496 | Msa0817710:intron | 30.0% | |
| ! | ACAAATTTAGATATGGTGGA+TGG | + | chr5_3:53107508-53107527 | Msa0817710:CDS | 30.0% |
| GAGAATTTGTAACTAAGAAC+AGG | + | chr5_3:53107637-53107656 | Msa0817710:CDS | 30.0% | |
| AATTACCTTTAACCCATAAC+GGG | - | chr5_3:53107834-53107853 | None:intergenic | 30.0% | |
| CAATCTTACAAATGTCAGAA+AGG | - | chr5_3:53107989-53108008 | None:intergenic | 30.0% | |
| AATAAAGGAACAAGAAGTCA+AGG | - | chr5_3:53108248-53108267 | None:intergenic | 30.0% | |
| ACTAATTGCTTCAATGTACA+GGG | - | chr5_3:53108274-53108293 | None:intergenic | 30.0% | |
| TACTAATTGCTTCAATGTAC+AGG | - | chr5_3:53108275-53108294 | None:intergenic | 30.0% | |
| AGATTATACAAAGCCTAACA+AGG | - | chr5_3:53108573-53108592 | None:intergenic | 30.0% | |
| CATAAAACCTAACATTAGCA+TGG | - | chr5_3:53108616-53108635 | None:intergenic | 30.0% | |
| ATATATGAGATTGGATCAAC+TGG | + | chr5_3:53108811-53108830 | Msa0817710:CDS | 30.0% | |
| ATCAACTGGAATTAGTAGTT+TGG | + | chr5_3:53108825-53108844 | Msa0817710:CDS | 30.0% | |
| TCAACTGGAATTAGTAGTTT+GGG | + | chr5_3:53108826-53108845 | Msa0817710:CDS | 30.0% | |
| AACCTATTTACTTCTGTGTA+TGG | + | chr5_3:53108880-53108899 | Msa0817710:CDS | 30.0% | |
| ACCTATTTACTTCTGTGTAT+GGG | + | chr5_3:53108881-53108900 | Msa0817710:CDS | 30.0% | |
| TTCACTGACGTATATACTAA+GGG | - | chr5_3:53108913-53108932 | None:intergenic | 30.0% | |
| TTTCACTGACGTATATACTA+AGG | - | chr5_3:53108914-53108933 | None:intergenic | 30.0% | |
| !! | CTAAGGAATTTGCTAAATCA+GGG | - | chr5_3:53109147-53109166 | None:intergenic | 30.0% |
| !! | AGATGGTGTTTTTCTGAGAA+CGG | - | chr5_3:53104601-53104620 | None:intergenic | 35.0% |
| AATGAAGAAACAGAGGAAGA+TGG | - | chr5_3:53104618-53104637 | None:intergenic | 35.0% | |
| !! | GATTCGTTTGTTTTCGTTGA+TGG | - | chr5_3:53104713-53104732 | None:intergenic | 35.0% |
| TTGGATCATGAAAATGGAAG+AGG | - | chr5_3:53104735-53104754 | None:intergenic | 35.0% | |
| CTTAAACTAATCAGAAGCTC+CGG | + | chr5_3:53104769-53104788 | Msa0817710:five_prime_UTR | 35.0% | |
| AGAAAACCTTCATTTCGAAC+CGG | - | chr5_3:53104791-53104810 | None:intergenic | 35.0% | |
| ! | GTTCGAAATGAAGGTTTTCT+TGG | + | chr5_3:53104791-53104810 | Msa0817710:five_prime_UTR | 35.0% |
| !!! | TTTTGTTGGTTTATTAGCGG+CGG | + | chr5_3:53104856-53104875 | Msa0817710:five_prime_UTR | 35.0% |
| ! | CTTGATCTTGGCTGATTTAA+CGG | - | chr5_3:53104948-53104967 | None:intergenic | 35.0% |
| AACCTTGAATCAGTGAAACT+GGG | - | chr5_3:53105070-53105089 | None:intergenic | 35.0% | |
| ! | TTTGGGACTAAGATTCTGTT+TGG | + | chr5_3:53105343-53105362 | Msa0817710:intron | 35.0% |
| TTGGGACTAAGATTCTGTTT+GGG | + | chr5_3:53105344-53105363 | Msa0817710:intron | 35.0% | |
| TAGCACTAACCTTCAAATCA+AGG | - | chr5_3:53105453-53105472 | None:intergenic | 35.0% | |
| GTAGTTGATCAAATGATCAC+TGG | - | chr5_3:53105886-53105905 | None:intergenic | 35.0% | |
| ATTTGATCAACTACGGAGTT+CGG | + | chr5_3:53105892-53105911 | Msa0817710:intron | 35.0% | |
| CTTTCAAAGTTAACTTACCC+TGG | + | chr5_3:53106295-53106314 | Msa0817710:intron | 35.0% | |
| TTGAGTCAGTACATATTGTG+TGG | + | chr5_3:53106535-53106554 | Msa0817710:CDS | 35.0% | |
| TTTAGAAGACTTTCTGATGG+AGG | - | chr5_3:53106573-53106592 | None:intergenic | 35.0% | |
| TAGATTTGGACTTTACAACG+TGG | - | chr5_3:53106605-53106624 | None:intergenic | 35.0% | |
| GTAAAGTCCAAATCTAGAGA+CGG | + | chr5_3:53106609-53106628 | Msa0817710:CDS | 35.0% | |
| GTTGAGGTTTGATATCAACA+CGG | + | chr5_3:53106644-53106663 | Msa0817710:CDS | 35.0% | |
| TGGAATTCGCATTTGATGTT+TGG | + | chr5_3:53106763-53106782 | Msa0817710:CDS | 35.0% | |
| ATACCAACGAATCTAACCAA+TGG | - | chr5_3:53106830-53106849 | None:intergenic | 35.0% | |
| GTTAGATTCGTTGGTATGTA+TGG | + | chr5_3:53106833-53106852 | Msa0817710:intron | 35.0% | |
| ! | TACTTTTATGCCTCTGCTTT+TGG | + | chr5_3:53106921-53106940 | Msa0817710:intron | 35.0% |
| !!! | TGTTTTAGTTCCAAAAGCAG+AGG | - | chr5_3:53106934-53106953 | None:intergenic | 35.0% |
| TAACTAATTAAGCTTGGAGC+AGG | + | chr5_3:53106970-53106989 | Msa0817710:intron | 35.0% | |
| AACTAATTAAGCTTGGAGCA+GGG | + | chr5_3:53106971-53106990 | Msa0817710:intron | 35.0% | |
| TAGCAGTTCAAACAAAGAAC+AGG | - | chr5_3:53107034-53107053 | None:intergenic | 35.0% | |
| TTCAGTTAGATCCACAATGA+GGG | - | chr5_3:53107255-53107274 | None:intergenic | 35.0% | |
| TTTCAGTTAGATCCACAATG+AGG | - | chr5_3:53107256-53107275 | None:intergenic | 35.0% | |
| TCATTGTGGATCTAACTGAA+AGG | + | chr5_3:53107255-53107274 | Msa0817710:intron | 35.0% | |
| TATCTCTCTGATCTGAACAT+GGG | - | chr5_3:53107410-53107429 | None:intergenic | 35.0% | |
| TTATCTCTCTGATCTGAACA+TGG | - | chr5_3:53107411-53107430 | None:intergenic | 35.0% | |
| !! | AATTTAGATATGGTGGATGG+TGG | + | chr5_3:53107511-53107530 | Msa0817710:CDS | 35.0% |
| TGCAATATCTTCACAATTCC+TGG | - | chr5_3:53107776-53107795 | None:intergenic | 35.0% | |
| ATTACCTTTAACCCATAACG+GGG | - | chr5_3:53107833-53107852 | None:intergenic | 35.0% | |
| AATGTCAGAAAGGAGAAAGA+CGG | - | chr5_3:53107979-53107998 | None:intergenic | 35.0% | |
| AACACCATCTAATCCAAAGA+AGG | - | chr5_3:53108154-53108173 | None:intergenic | 35.0% | |
| CAATGTACAGGGTGTAATAA+AGG | - | chr5_3:53108263-53108282 | None:intergenic | 35.0% | |
| GAAAACATGCTATGAAAGCT+AGG | - | chr5_3:53108436-53108455 | None:intergenic | 35.0% | |
| TGAAGTTCCATGCTAATGTT+AGG | + | chr5_3:53108606-53108625 | Msa0817710:intron | 35.0% | |
| AAATCAAACATTGCTCTCGT+TGG | + | chr5_3:53108655-53108674 | Msa0817710:intron | 35.0% | |
| CACATGCATCTTCTTTGTAT+GGG | - | chr5_3:53108706-53108725 | None:intergenic | 35.0% | |
| ACACATGCATCTTCTTTGTA+TGG | - | chr5_3:53108707-53108726 | None:intergenic | 35.0% | |
| TATTTACTTCTGTGTATGGG+CGG | + | chr5_3:53108884-53108903 | Msa0817710:CDS | 35.0% | |
| ATAAATGACTAACGTGAACG+TGG | - | chr5_3:53109081-53109100 | None:intergenic | 35.0% | |
| !! | CCTAAGGAATTTGCTAAATC+AGG | - | chr5_3:53109148-53109167 | None:intergenic | 35.0% |
| CCTGATTTAGCAAATTCCTT+AGG | + | chr5_3:53109145-53109164 | Msa0817710:three_prime_UTR | 35.0% | |
| ! | TGTGTTTGGAATGAAGGAGA+GGG | - | chr5_3:53104490-53104509 | None:intergenic | 40.0% |
| ! | ATGTGTTTGGAATGAAGGAG+AGG | - | chr5_3:53104491-53104510 | None:intergenic | 40.0% |
| GTTGATGCACGCAATATGAA+TGG | - | chr5_3:53104546-53104565 | None:intergenic | 40.0% | |
| ! | TGTTCGGAGTTGAGAGATTT+TGG | - | chr5_3:53104568-53104587 | None:intergenic | 40.0% |
| !!! | GAACGGTGGTGTTTTTTGTT+CGG | - | chr5_3:53104584-53104603 | None:intergenic | 40.0% |
| TGGTTAAGGAGACATGAATC+AGG | - | chr5_3:53104693-53104712 | None:intergenic | 40.0% | |
| CGTGTCTTGGATCATGAAAA+TGG | - | chr5_3:53104741-53104760 | None:intergenic | 40.0% | |
| AGTGAAACTGGGAATTTGAG+GGG | - | chr5_3:53105059-53105078 | None:intergenic | 40.0% | |
| CAGTGAAACTGGGAATTTGA+GGG | - | chr5_3:53105060-53105079 | None:intergenic | 40.0% | |
| TCAGTGAAACTGGGAATTTG+AGG | - | chr5_3:53105061-53105080 | None:intergenic | 40.0% | |
| !! | TTCCCAGTTTCACTGATTCA+AGG | + | chr5_3:53105065-53105084 | Msa0817710:CDS | 40.0% |
| GAACCTTGAATCAGTGAAAC+TGG | - | chr5_3:53105071-53105090 | None:intergenic | 40.0% | |
| !! | TTGTAACGAGCTTTTGGTGT+TGG | + | chr5_3:53105570-53105589 | Msa0817710:intron | 40.0% |
| !!! | TGTAACGAGCTTTTGGTGTT+GGG | + | chr5_3:53105571-53105590 | Msa0817710:intron | 40.0% |
| !!! | GCTTTTGGTGTTGGGAATTT+TGG | + | chr5_3:53105579-53105598 | Msa0817710:intron | 40.0% |
| GCATATATACTCCTCGGATT+AGG | + | chr5_3:53105617-53105636 | Msa0817710:intron | 40.0% | |
| ATACGATACATATCCGACAC+CGG | - | chr5_3:53105649-53105668 | None:intergenic | 40.0% | |
| TGGAAGTAGAAACGATTACC+TGG | + | chr5_3:53105833-53105852 | Msa0817710:intron | 40.0% | |
| GATCAGTAATTCGTAGCTGA+TGG | + | chr5_3:53105914-53105933 | Msa0817710:intron | 40.0% | |
| !!! | AGTGTGTTTTTGGTCAGTGT+TGG | + | chr5_3:53105944-53105963 | Msa0817710:intron | 40.0% |
| !!! | GTGTGTTTTTGGTCAGTGTT+GGG | + | chr5_3:53105945-53105964 | Msa0817710:intron | 40.0% |
| TTACCCTGGAATTAGAGAGA+GGG | + | chr5_3:53106309-53106328 | Msa0817710:intron | 40.0% | |
| !! | ATATGTACTGACTCAAGTCG+AGG | - | chr5_3:53106531-53106550 | None:intergenic | 40.0% |
| AGACTTTCTGATGGAGGATT+GGG | - | chr5_3:53106567-53106586 | None:intergenic | 40.0% | |
| AAGACTTTCTGATGGAGGAT+TGG | - | chr5_3:53106568-53106587 | None:intergenic | 40.0% | |
| ATATCGTCCGTCTCTAGATT+TGG | - | chr5_3:53106619-53106638 | None:intergenic | 40.0% | |
| TGTCATATTTCCCTGCTCTT+CGG | + | chr5_3:53106740-53106759 | Msa0817710:CDS | 40.0% | |
| ! | TGTCCATTGGTTAGATTCGT+TGG | + | chr5_3:53106824-53106843 | Msa0817710:CDS | 40.0% |
| ACTAGCAGCTACTTAAAGCA+TGG | - | chr5_3:53107316-53107335 | None:intergenic | 40.0% | |
| TTTGTGAAAGAATGCTGCCT+TGG | - | chr5_3:53107574-53107593 | None:intergenic | 40.0% | |
| TTTCTTGTCGCAAATGCAAC+TGG | + | chr5_3:53107802-53107821 | Msa0817710:CDS | 40.0% | |
| TTACCTTTAACCCATAACGG+GGG | - | chr5_3:53107832-53107851 | None:intergenic | 40.0% | |
| GAGGAACTTCTGAACTAAAC+AGG | - | chr5_3:53107919-53107938 | None:intergenic | 40.0% | |
| !! | GTTTTGAGCTAGTGAAGTTG+AGG | - | chr5_3:53107938-53107957 | None:intergenic | 40.0% |
| ATGTCAGAAAGGAGAAAGAC+GGG | - | chr5_3:53107978-53107997 | None:intergenic | 40.0% | |
| ATCTAATCCAAAGAAGGAGG+GGG | - | chr5_3:53108148-53108167 | None:intergenic | 40.0% | |
| CATCTAATCCAAAGAAGGAG+GGG | - | chr5_3:53108149-53108168 | None:intergenic | 40.0% | |
| CCATCTAATCCAAAGAAGGA+GGG | - | chr5_3:53108150-53108169 | None:intergenic | 40.0% | |
| ACCATCTAATCCAAAGAAGG+AGG | - | chr5_3:53108151-53108170 | None:intergenic | 40.0% | |
| ! | GACTCTTTTGTTCCTTTCTG+TGG | + | chr5_3:53108391-53108410 | Msa0817710:intron | 40.0% |
| CTAGGCATCATTGCACAATT+TGG | - | chr5_3:53108418-53108437 | None:intergenic | 40.0% | |
| ACAACTTGTCGCAAAACACT+GGG | - | chr5_3:53108537-53108556 | None:intergenic | 40.0% | |
| ATGGGCGACATGTATTAACA+TGG | - | chr5_3:53108688-53108707 | None:intergenic | 40.0% | |
| ! | GTGGATTTTGCCTTTGTTAC+AGG | + | chr5_3:53108784-53108803 | Msa0817710:intron | 40.0% |
| ACTGGAATTAGTAGTTTGGG+AGG | + | chr5_3:53108829-53108848 | Msa0817710:CDS | 40.0% | |
| GCCCATACACAGAAGTAAAT+AGG | - | chr5_3:53108885-53108904 | None:intergenic | 40.0% | |
| !! | ATAGTCGCAATGTCTGGTTT+TGG | + | chr5_3:53108941-53108960 | Msa0817710:CDS | 40.0% |
| !!! | CAATGTCTGGTTTTGGTGAT+TGG | + | chr5_3:53108948-53108967 | Msa0817710:exon | 40.0% |
| !! | GACAAAAAGCATCCTAACAG+AGG | - | chr5_3:53109211-53109230 | None:intergenic | 40.0% |
| ! | TTTGGAATGAAGGAGAGGGA+AGG | - | chr5_3:53104486-53104505 | None:intergenic | 45.0% |
| !! | TGGTGTTTTTCTGAGAACGG+TGG | - | chr5_3:53104598-53104617 | None:intergenic | 45.0% |
| AGGAGACATGAATCAGGTGA+TGG | - | chr5_3:53104687-53104706 | None:intergenic | 45.0% | |
| GAAACCTCTGTTCAATCCGA+CGG | - | chr5_3:53104907-53104926 | None:intergenic | 45.0% | |
| GTCGGATTGAACAGAGGTTT+CGG | + | chr5_3:53104906-53104925 | Msa0817710:CDS | 45.0% | |
| ! | GATCTTGGCTGATTTAACGG+TGG | - | chr5_3:53104945-53104964 | None:intergenic | 45.0% |
| ! | CTTCTCGCGTTTTCTTCTAC+TGG | + | chr5_3:53104998-53105017 | Msa0817710:CDS | 45.0% |
| TACGATACATATCCGACACC+GGG | - | chr5_3:53105648-53105667 | None:intergenic | 45.0% | |
| CTGAAGTCATGCTTGAGAGA+AGG | + | chr5_3:53106197-53106216 | Msa0817710:intron | 45.0% | |
| CTTACCCTGGAATTAGAGAG+AGG | + | chr5_3:53106308-53106327 | Msa0817710:intron | 45.0% | |
| TACCCTGGAATTAGAGAGAG+GGG | + | chr5_3:53106310-53106329 | Msa0817710:intron | 45.0% | |
| GGGGGAAACAAAACAGAATC+TGG | + | chr5_3:53106329-53106348 | Msa0817710:intron | 45.0% | |
| ACGGACGATATGTGAAGTTG+AGG | + | chr5_3:53106628-53106647 | Msa0817710:CDS | 45.0% | |
| TGATGTTTGGCAAAGTGCAC+CGG | + | chr5_3:53106776-53106795 | Msa0817710:CDS | 45.0% | |
| ACAAATCCCACCATTGCATC+CGG | - | chr5_3:53106798-53106817 | None:intergenic | 45.0% | |
| GATTTGTACCTCGTGTCCAT+TGG | + | chr5_3:53106811-53106830 | Msa0817710:CDS | 45.0% | |
| GAATCTAACCAATGGACACG+AGG | - | chr5_3:53106822-53106841 | None:intergenic | 45.0% | |
| TGGGGATTATGGCTGTTAGA+GGG | - | chr5_3:53107063-53107082 | None:intergenic | 45.0% | |
| TTGGGGATTATGGCTGTTAG+AGG | - | chr5_3:53107064-53107083 | None:intergenic | 45.0% | |
| GTTAGATCCACAATGAGGGT+CGG | - | chr5_3:53107251-53107270 | None:intergenic | 45.0% | |
| ATATAGCATGGTGCTCTCCA+AGG | + | chr5_3:53107554-53107573 | Msa0817710:CDS | 45.0% | |
| AATTCTTCCCCCTCCTTCTT+TGG | + | chr5_3:53108138-53108157 | Msa0817710:intron | 45.0% | |
| ! | CCCTCCTTCTTTGGATTAGA+TGG | + | chr5_3:53108147-53108166 | Msa0817710:intron | 45.0% |
| AGGAACAAGAAGTCAAGGAC+TGG | - | chr5_3:53108243-53108262 | None:intergenic | 45.0% | |
| GCACAATTTGGTCCACAGAA+AGG | - | chr5_3:53108406-53108425 | None:intergenic | 45.0% | |
| CACAACTTGTCGCAAAACAC+TGG | - | chr5_3:53108538-53108557 | None:intergenic | 45.0% | |
| GTACACTGTCTCACCTTGTT+AGG | + | chr5_3:53108557-53108576 | Msa0817710:intron | 45.0% | |
| !! | AGGTTTTATGCTGCCCATCA+TGG | + | chr5_3:53108626-53108645 | Msa0817710:intron | 45.0% |
| GTTTGGGAGGTCATAGTGAA+CGG | + | chr5_3:53108842-53108861 | Msa0817710:CDS | 45.0% | |
| CCAGACATTGCGACTATCAA+CGG | - | chr5_3:53108938-53108957 | None:intergenic | 45.0% | |
| !! | ATCAGGTGATGGATGACACG+TGG | - | chr5_3:53104676-53104695 | None:intergenic | 50.0% |
| ! | GAAGCTCCGGTTCGAAATGA+AGG | + | chr5_3:53104782-53104801 | Msa0817710:five_prime_UTR | 50.0% |
| GGTTCGTTACTGAACCGAAC+CGG | + | chr5_3:53104812-53104831 | Msa0817710:five_prime_UTR | 50.0% | |
| TTATTAGCGGCGGTGATGAG+AGG | + | chr5_3:53104866-53104885 | Msa0817710:exon | 50.0% | |
| TATTAGCGGCGGTGATGAGA+GGG | + | chr5_3:53104867-53104886 | Msa0817710:exon | 50.0% | |
| TGAACCGTCGGATTGAACAG+AGG | + | chr5_3:53104900-53104919 | Msa0817710:CDS | 50.0% | |
| ACCCTGGAATTAGAGAGAGG+GGG | + | chr5_3:53106311-53106330 | Msa0817710:intron | 50.0% | |
| TCCCCCTCTCTCTAATTCCA+GGG | - | chr5_3:53106315-53106334 | None:intergenic | 50.0% | |
| TTCCCCCTCTCTCTAATTCC+AGG | - | chr5_3:53106316-53106335 | None:intergenic | 50.0% | |
| CATATTTCCCTGCTCTTCGG+TGG | + | chr5_3:53106743-53106762 | Msa0817710:CDS | 50.0% | |
| GTGGACGGGTACATATAGCA+TGG | + | chr5_3:53107542-53107561 | Msa0817710:CDS | 50.0% | |
| ACACTGGGTAGCATGGTCAT+TGG | - | chr5_3:53108522-53108541 | None:intergenic | 50.0% | |
| TCGCAAAACACTGGGTAGCA+TGG | - | chr5_3:53108529-53108548 | None:intergenic | 50.0% | |
| !! | CCGTTGATAGTCGCAATGTC+TGG | + | chr5_3:53108935-53108954 | Msa0817710:CDS | 50.0% |
| CTAAGGCAGCATCCTCTGTT+AGG | + | chr5_3:53109196-53109215 | Msa0817710:three_prime_UTR | 50.0% | |
| !! | GGTGATGGATGACACGTGGA+TGG | - | chr5_3:53104672-53104691 | None:intergenic | 55.0% |
| ! | GGAGCTGTTGGTTGAACCGT+CGG | + | chr5_3:53104888-53104907 | Msa0817710:CDS | 55.0% |
| GCGAATTCCACCGAAGAGCA+GGG | - | chr5_3:53106753-53106772 | None:intergenic | 55.0% | |
| TGCGAATTCCACCGAAGAGC+AGG | - | chr5_3:53106754-53106773 | None:intergenic | 55.0% | |
| GCAAAGTGCACCGGATGCAA+TGG | + | chr5_3:53106785-53106804 | Msa0817710:CDS | 55.0% | |
| AAGTGCACCGGATGCAATGG+TGG | + | chr5_3:53106788-53106807 | Msa0817710:CDS | 55.0% | |
| AGTGCACCGGATGCAATGGT+GGG | + | chr5_3:53106789-53106808 | Msa0817710:CDS | 55.0% | |
| ! | TCTGAAGCCGACCCTCATTG+TGG | + | chr5_3:53107241-53107260 | Msa0817710:intron | 55.0% |
| !! | ATGGTGGATGGTGGTCTGTG+TGG | + | chr5_3:53107520-53107539 | Msa0817710:CDS | 55.0% |
| ! | ATGGTGGTCTGTGTGGTGGA+CGG | + | chr5_3:53107527-53107546 | Msa0817710:CDS | 55.0% |
| AACTGGTGCACCCCCGTTAT+GGG | + | chr5_3:53107819-53107838 | Msa0817710:CDS | 55.0% | |
| ! | GCACCCCCGTTATGGGTTAA+AGG | + | chr5_3:53107826-53107845 | Msa0817710:CDS | 55.0% |
| CGGTGATGAGAGGGAGCTGT+TGG | + | chr5_3:53104876-53104895 | Msa0817710:exon | 60.0% | |
| ! | TCCTCGGATTAGGCGTGTCC+CGG | + | chr5_3:53105627-53105646 | Msa0817710:intron | 60.0% |
| GATTAGGCGTGTCCCGGTGT+CGG | + | chr5_3:53105633-53105652 | Msa0817710:intron | 60.0% | |
| ! | GTGGATGGTGGTCTGTGTGG+TGG | + | chr5_3:53107523-53107542 | Msa0817710:CDS | 60.0% |
| !! | TGGTGGTCTGTGTGGTGGAC+GGG | + | chr5_3:53107528-53107547 | Msa0817710:CDS | 60.0% |
| CAACTGGTGCACCCCCGTTA+TGG | + | chr5_3:53107818-53107837 | Msa0817710:CDS | 60.0% | |
| ACCGGGACACGCCTAATCCG+AGG | - | chr5_3:53105631-53105650 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 53104478 | 53109281 | 53104478 | ID=Msa0817710;Name=Msa0817710 |
| chr5_3 | mRNA | 53104478 | 53109281 | 53104478 | ID=Msa0817710-mRNA-1;Parent=Msa0817710;Name=Msa0817710-mRNA-1;_AED=0.06;_eAED=0.06;_QI=403|1|1|1|1|1|5|315|332 |
| chr5_3 | exon | 53104478 | 53105086 | 53104478 | ID=Msa0817710-mRNA-1:exon:15998;Parent=Msa0817710-mRNA-1 |
| chr5_3 | exon | 53106449 | 53106845 | 53106449 | ID=Msa0817710-mRNA-1:exon:15999;Parent=Msa0817710-mRNA-1 |
| chr5_3 | exon | 53107495 | 53107658 | 53107495 | ID=Msa0817710-mRNA-1:exon:16000;Parent=Msa0817710-mRNA-1 |
| chr5_3 | exon | 53107777 | 53107847 | 53107777 | ID=Msa0817710-mRNA-1:exon:16001;Parent=Msa0817710-mRNA-1 |
| chr5_3 | exon | 53108806 | 53109281 | 53108806 | ID=Msa0817710-mRNA-1:exon:16002;Parent=Msa0817710-mRNA-1 |
| chr5_3 | five_prime_UTR | 53104478 | 53104880 | 53104478 | ID=Msa0817710-mRNA-1:five_prime_utr;Parent=Msa0817710-mRNA-1 |
| chr5_3 | CDS | 53104881 | 53105086 | 53104881 | ID=Msa0817710-mRNA-1:cds;Parent=Msa0817710-mRNA-1 |
| chr5_3 | CDS | 53106449 | 53106845 | 53106449 | ID=Msa0817710-mRNA-1:cds;Parent=Msa0817710-mRNA-1 |
| chr5_3 | CDS | 53107495 | 53107658 | 53107495 | ID=Msa0817710-mRNA-1:cds;Parent=Msa0817710-mRNA-1 |
| chr5_3 | CDS | 53107777 | 53107847 | 53107777 | ID=Msa0817710-mRNA-1:cds;Parent=Msa0817710-mRNA-1 |
| chr5_3 | CDS | 53108806 | 53108966 | 53108806 | ID=Msa0817710-mRNA-1:cds;Parent=Msa0817710-mRNA-1 |
| chr5_3 | three_prime_UTR | 53108967 | 53109281 | 53108967 | ID=Msa0817710-mRNA-1:three_prime_utr;Parent=Msa0817710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
