AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1205540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1205540 MtrunA17_Chr4g0054801 98.198 222 3 1 1 222 1 221 6.33e-157 433
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1205540 AT2G35360.1 65.438 217 75 0 5 221 8 224 1.12e-95 279
Msa1205540 AT2G35360.3 59.880 167 67 0 5 171 8 174 1.39e-62 193
Msa1205540 AT2G35360.2 59.880 167 67 0 5 171 8 174 1.39e-62 193

Find 89 sgRNAs with CRISPR-Local

Find 411 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGTCACTTCATTGATTTC+TGG 0.144798 8_1:+61883156 None:intergenic
CCATCCTTCACTGGTGGCTT+TGG 0.245979 8_1:+61887978 None:intergenic
CATAATCATGTGGTTTATCT+TGG 0.301698 8_1:-61887428 Msa1205540:CDS
CACTTCATTGATTTCTGGGC+TGG 0.307390 8_1:+61883161 None:intergenic
TGTGGTGCAGTGGGATGCTT+TGG 0.308222 8_1:-61882965 Msa1205540:three_prime_UTR
CATGATAAGTTGAAGCTTCC+AGG 0.319689 8_1:-61887788 Msa1205540:intron
TGGCCCCTGTTGCTCATAGA+TGG 0.329380 8_1:-61887408 Msa1205540:CDS
TGTCTCATTCTCTTCAATCT+TGG 0.331568 8_1:-61886847 Msa1205540:CDS
TTAAATTCCACTCTTAGCTT+TGG 0.350462 8_1:+61882916 None:intergenic
CGATGATGACGATGAAGATT+TGG 0.351720 8_1:-61887946 Msa1205540:intron
TAGTCACTTCATTGATTTCT+GGG 0.353244 8_1:+61883157 None:intergenic
AGTCAATAGCTCTGAGTGAT+TGG 0.378290 8_1:+61883239 None:intergenic
TGCGAGAAGACATCAATGTT+TGG 0.389300 8_1:+61883276 None:intergenic
ACCAATGTAATGATATGTTT+TGG 0.390561 8_1:-61883066 Msa1205540:three_prime_UTR
AGATCCCATCTATGAGCAAC+AGG 0.393475 8_1:+61887403 None:intergenic
GAAGACTTCAGAGAGCTTCC+AGG 0.397687 8_1:-61883370 Msa1205540:CDS
CACTCTGAGTCTGAAGGCAT+GGG 0.403616 8_1:-61887455 Msa1205540:CDS
ATTAGACTCAAGTTGTCAAT+AGG 0.409279 8_1:+61888283 None:intergenic
AGCTTGGTTGTGTTGACATT+GGG 0.418062 8_1:-61888693 Msa1205540:five_prime_UTR
TTTCCACCGACTTGATGATT+GGG 0.422279 8_1:+61887832 None:intergenic
CTCAGGCGAGAGGGTGGAGC+TGG 0.425020 8_1:+61888589 None:intergenic
CGATCTGCATTTAGCGTCCC+TGG 0.435977 8_1:+61883352 None:intergenic
GACATATACAGAGGCTTGTC+GGG 0.438610 8_1:-61882942 Msa1205540:three_prime_UTR
TAACTCCGTTTCTTGTCCCT+TGG 0.445387 8_1:-61883022 Msa1205540:three_prime_UTR
TTTATGTAGATACTTGCAAC+TGG 0.456378 8_1:-61886874 Msa1205540:intron
GTGTTGTATGTAAATTATAC+TGG 0.458724 8_1:-61883090 Msa1205540:three_prime_UTR
AGAAGATTAATTGCAAGTAA+TGG 0.461313 8_1:-61888313 Msa1205540:CDS
AACTTATTGCAGTTGTAGCT+TGG 0.469241 8_1:-61888709 Msa1205540:five_prime_UTR
ACATGCATATGTTTAGTTGA+AGG 0.469494 8_1:+61883111 None:intergenic
TAGCTTGGTTGTGTTGACAT+TGG 0.472078 8_1:-61888694 Msa1205540:five_prime_UTR
GAAATTGAAGGAAACCTTGA+TGG 0.473298 8_1:+61888555 None:intergenic
TCACTCTGAGTCTGAAGGCA+TGG 0.473349 8_1:-61887456 Msa1205540:CDS
AATCTTGGAAAGCGCAAAGC+TGG 0.474146 8_1:-61886832 Msa1205540:CDS
GAGAGTTCCCTCTTCCATCA+AGG 0.478194 8_1:-61888569 Msa1205540:intron
GTGGTGCAGTGGGATGCTTT+GGG 0.480933 8_1:-61882964 Msa1205540:three_prime_UTR
AGAAACCAAGGGACAAGAAA+CGG 0.483120 8_1:+61883017 None:intergenic
GTCAATAGCTCTGAGTGATT+GGG 0.485781 8_1:+61883240 None:intergenic
GGACATATACAGAGGCTTGT+CGG 0.485944 8_1:-61882943 Msa1205540:three_prime_UTR
ACTTCATTGATTTCTGGGCT+GGG 0.486491 8_1:+61883162 None:intergenic
GGCCCCTGTTGCTCATAGAT+GGG 0.491016 8_1:-61887407 Msa1205540:CDS
AACTTGAGTCTAATTCTTCG+CGG 0.506662 8_1:-61888274 Msa1205540:CDS
TTGTCATGCCCATCCTTCAC+TGG 0.507443 8_1:+61887969 None:intergenic
GGTTGTGTTGACATTGGGCG+GGG 0.511117 8_1:-61888688 Msa1205540:five_prime_UTR
TGGTTGTGTTGACATTGGGC+GGG 0.518983 8_1:-61888689 Msa1205540:five_prime_UTR
AGCGCAAAGCTGGTGACTCC+AGG 0.523488 8_1:-61886822 Msa1205540:intron
TGATGGAAGAGGGAACTCTC+AGG 0.527983 8_1:+61888572 None:intergenic
CAAAGCCACCAGTGAAGGAT+GGG 0.529413 8_1:-61887977 Msa1205540:CDS
CCAAAGCCACCAGTGAAGGA+TGG 0.531977 8_1:-61887978 Msa1205540:CDS
GAAGGAAACCTTGATGGAAG+AGG 0.533628 8_1:+61888561 None:intergenic
TTGGTTGTGTTGACATTGGG+CGG 0.542016 8_1:-61888690 Msa1205540:five_prime_UTR
TTGAACTCTTGTGGTGCAGT+GGG 0.542944 8_1:-61882974 Msa1205540:three_prime_UTR
GGAACTCTCAGGCGAGAGGG+TGG 0.545819 8_1:+61888583 None:intergenic
GTGCGCATGCAACTCAATGA+TGG 0.547699 8_1:-61888217 Msa1205540:CDS
TCATGCCCATCCTTCACTGG+TGG 0.553264 8_1:+61887972 None:intergenic
TTTGAACTCTTGTGGTGCAG+TGG 0.554434 8_1:-61882975 Msa1205540:three_prime_UTR
CAAACCAAAGCCACCAGTGA+AGG 0.560036 8_1:-61887982 Msa1205540:CDS
CTAAGAGTGGAATTTAAACA+TGG 0.563641 8_1:-61882910 Msa1205540:three_prime_UTR
TCCAAAACATATCATTACAT+TGG 0.568221 8_1:+61883065 None:intergenic
TGTTTCTGAAGATGAATCAT+CGG 0.570298 8_1:-61888647 Msa1205540:CDS
GAGGGAACTCTCAGGCGAGA+GGG 0.575209 8_1:+61888580 None:intergenic
TTCCACCGACTTGATGATTG+GGG 0.580105 8_1:+61887833 None:intergenic
AAGGAAACCTTGATGGAAGA+GGG 0.581849 8_1:+61888562 None:intergenic
GTTGCTCATAGATGGGATCT+CGG 0.582805 8_1:-61887400 Msa1205540:CDS
GCATATGTTTAGTTGAAGGA+AGG 0.588067 8_1:+61883115 None:intergenic
AGAGGGTGGAGCTGGACCGA+TGG 0.589785 8_1:+61888597 None:intergenic
AGATGAATCATCGGAGAACA+AGG 0.590614 8_1:-61888638 Msa1205540:CDS
TCAAACTCAAACAGAAACCA+AGG 0.590840 8_1:+61883005 None:intergenic
TTTGATAGAGATATAAGAGC+GGG 0.591509 8_1:-61883328 Msa1205540:CDS
AAGACTTCAGAGAGCTTCCA+GGG 0.592767 8_1:-61883369 Msa1205540:CDS
CATTGGGCGGGGATCAGCAA+TGG 0.596032 8_1:-61888677 Msa1205540:exon
CAGGGACGCTAAATGCAGAT+CGG 0.603722 8_1:-61883351 Msa1205540:CDS
AGCTTCCCCAATCATCAAGT+CGG 0.604617 8_1:-61887838 Msa1205540:CDS
TTTGGATTATGACGAGGACA+AGG 0.605375 8_1:+61883294 None:intergenic
CGGGATTCCAAAGCTAAGAG+TGG 0.610819 8_1:-61882923 Msa1205540:three_prime_UTR
GAAAGGTGACATACATACAA+AGG 0.611316 8_1:+61887376 None:intergenic
GAAATCGTCCTCAAAACCAT+CGG 0.617468 8_1:-61888613 Msa1205540:CDS
AGAGGGAACTCTCAGGCGAG+AGG 0.624004 8_1:+61888579 None:intergenic
TAAGAGTGGAATTTAAACAT+GGG 0.636024 8_1:-61882909 Msa1205540:three_prime_UTR
TTCCCCAATCATCAAGTCGG+TGG 0.644706 8_1:-61887835 Msa1205540:CDS
CATGGGTTCTCATAATCATG+TGG 0.646192 8_1:-61887438 Msa1205540:CDS
CAAACTCAAACAGAAACCAA+GGG 0.652135 8_1:+61883006 None:intergenic
ATCCCATCTATGAGCAACAG+GGG 0.661056 8_1:+61887405 None:intergenic
GATCCCATCTATGAGCAACA+GGG 0.674770 8_1:+61887404 None:intergenic
ATGCTTTGGGACATATACAG+AGG 0.683865 8_1:-61882951 Msa1205540:three_prime_UTR
CGCATGCAACTCAATGATGG+AGG 0.687734 8_1:-61888214 Msa1205540:intron
TCAATGTTTGGATTATGACG+AGG 0.690756 8_1:+61883288 None:intergenic
AAGAAACGGAGTTATTCACA+AGG 0.721888 8_1:+61883031 None:intergenic
GTTTGATAGAGATATAAGAG+CGG 0.736905 8_1:-61883329 Msa1205540:CDS
AGAAACGGAGTTATTCACAA+GGG 0.753221 8_1:+61883032 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATAAAATTGTTTCAAA+TGG + chr8_1:61882982-61883001 None:intergenic 10.0%
!!! TTTTTAATTTTTTTTTGTTG+GGG - chr8_1:61884121-61884140 Msa1205540:intron 10.0%
!! AAATCCTATATTTAAAAAAT+TGG - chr8_1:61884810-61884829 Msa1205540:intron 10.0%
!!! TTTAATATTATTTTAACATG+AGG - chr8_1:61885469-61885488 Msa1205540:intron 10.0%
!! TTTATTCTGTATTTATTAAT+TGG + chr8_1:61886861-61886880 None:intergenic 10.0%
!! TAAAACCCTAAAATAAAATT+GGG + chr8_1:61882904-61882923 None:intergenic 15.0%
!! ATAAAACCCTAAAATAAAAT+TGG + chr8_1:61882905-61882924 None:intergenic 15.0%
!!! TTTTCTTAAATCAATTTCAA+TGG - chr8_1:61883021-61883040 Msa1205540:three_prime_UTR 15.0%
!! TTTCTTAAATCAATTTCAAT+GGG - chr8_1:61883022-61883041 Msa1205540:three_prime_UTR 15.0%
!! AATTTGGTTAAATTACATAT+AGG - chr8_1:61883086-61883105 Msa1205540:three_prime_UTR 15.0%
!!! TTTTAATTTTTTTTTGTTGG+GGG - chr8_1:61884122-61884141 Msa1205540:intron 15.0%
!!! ATGTCCAATTTTTTAAATAT+AGG + chr8_1:61884817-61884836 None:intergenic 15.0%
!!! ATTTTTTTTCTGTTAAGTTT+TGG + chr8_1:61885918-61885937 None:intergenic 15.0%
!! ACTAAAATCATAAGATTATA+TGG + chr8_1:61886003-61886022 None:intergenic 15.0%
!!! TACTTTTTGGTTTAATAAAT+GGG + chr8_1:61886040-61886059 None:intergenic 15.0%
!!! TTACTTTTTGGTTTAATAAA+TGG + chr8_1:61886041-61886060 None:intergenic 15.0%
!!! GTTTTTTTTTTTTAGGTTTA+TGG + chr8_1:61886253-61886272 None:intergenic 15.0%
!!! AATTTCCCCAATTTTATTTT+AGG - chr8_1:61882895-61882914 Msa1205540:three_prime_UTR 20.0%
!!! ATTTCCCCAATTTTATTTTA+GGG - chr8_1:61882896-61882915 Msa1205540:three_prime_UTR 20.0%
!! AAAACCCTAAAATAAAATTG+GGG + chr8_1:61882903-61882922 None:intergenic 20.0%
!! AGTTAGTTAGTTAGTTAATT+TGG - chr8_1:61883070-61883089 Msa1205540:three_prime_UTR 20.0%
!! ATATAAAATGAAATACTTGG+TGG - chr8_1:61883296-61883315 Msa1205540:three_prime_UTR 20.0%
!! TGTCACATCATAATTAATTA+AGG + chr8_1:61883370-61883389 None:intergenic 20.0%
!!! TTTAGTTTTTCTTACAAATG+TGG - chr8_1:61883390-61883409 Msa1205540:CDS 20.0%
!!! AATCAAGCTATCTAAAATAA+AGG + chr8_1:61883423-61883442 None:intergenic 20.0%
!!! TTGCATTCTATTTTATTGTT+TGG - chr8_1:61883674-61883693 Msa1205540:intron 20.0%
!! ATGAGATATAATTCTTTGAA+AGG - chr8_1:61883748-61883767 Msa1205540:intron 20.0%
!! AAGAAATCATTATATATGTG+TGG - chr8_1:61883853-61883872 Msa1205540:intron 20.0%
!! ATATTACACAAACAAAAGAA+AGG + chr8_1:61884090-61884109 None:intergenic 20.0%
!!! TTTAATTTTTTTTTGTTGGG+GGG - chr8_1:61884123-61884142 Msa1205540:intron 20.0%
!!! TTTATTGATTTTAAGGAATC+AGG + chr8_1:61884340-61884359 None:intergenic 20.0%
!!! ACACTCATTTATTGATTTTA+AGG + chr8_1:61884347-61884366 None:intergenic 20.0%
!! ACGATATTAAGAAAATTGTT+AGG - chr8_1:61884768-61884787 Msa1205540:intron 20.0%
!! ATATTAAGAAAATTGTTAGG+AGG - chr8_1:61884771-61884790 Msa1205540:intron 20.0%
!! TATTAAGAAAATTGTTAGGA+GGG - chr8_1:61884772-61884791 Msa1205540:intron 20.0%
!! TAATTGGTTAACCTATATAA+AGG + chr8_1:61885336-61885355 None:intergenic 20.0%
!! AGATATAGGAATTATAGATT+AGG + chr8_1:61885370-61885389 None:intergenic 20.0%
!! AAATCATAACAAACTAGAAA+GGG - chr8_1:61887160-61887179 Msa1205540:intron 20.0%
!!! TATTTGATTAGCCTATATAA+AGG + chr8_1:61887209-61887228 None:intergenic 20.0%
!! TACATATGTCTGTTATAAAA+AGG + chr8_1:61887243-61887262 None:intergenic 20.0%
!! TGTCTATTGTATAAAAAAAC+CGG - chr8_1:61887268-61887287 Msa1205540:intron 20.0%
!!! AAATGTTAGTTGCAATTTTA+AGG - chr8_1:61887662-61887681 Msa1205540:intron 20.0%
!! ATTTAATCAAACTCTAGATT+GGG + chr8_1:61887779-61887798 None:intergenic 20.0%
!!! AAATGTTAGTTGCAATTTTA+AGG - chr8_1:61887662-61887681 Msa1205540:intron 20.0%
!! CATATGTAAAATACATGTAT+GGG + chr8_1:61887944-61887963 None:intergenic 20.0%
!! TCATATGTAAAATACATGTA+TGG + chr8_1:61887945-61887964 None:intergenic 20.0%
!! CATGAATTAGAAAAAATTTC+AGG + chr8_1:61888705-61888724 None:intergenic 20.0%
! AATAAAATTGGGGAAATTGA+AGG + chr8_1:61882893-61882912 None:intergenic 25.0%
! AGAAGATTAATTGCAAGTAA+TGG - chr8_1:61883120-61883139 Msa1205540:three_prime_UTR 25.0%
! CGCATATAAAATGAAATACT+TGG - chr8_1:61883293-61883312 Msa1205540:three_prime_UTR 25.0%
!!! ATTTTAGAACTAGAGTTATG+TGG - chr8_1:61883812-61883831 Msa1205540:intron 25.0%
! TCATTATATATGTGTGGAAA+TGG - chr8_1:61883859-61883878 Msa1205540:intron 25.0%
! AGAAGATTGTTCGTTAAAAA+GGG + chr8_1:61883911-61883930 None:intergenic 25.0%
! TAGAAGATTGTTCGTTAAAA+AGG + chr8_1:61883912-61883931 None:intergenic 25.0%
! ATCAAAATGATATCTGTCAA+TGG + chr8_1:61883949-61883968 None:intergenic 25.0%
!! ATTGACAGATATCATTTTGA+TGG - chr8_1:61883948-61883967 Msa1205540:intron 25.0%
!!! TTAATTTTTTTTTGTTGGGG+GGG - chr8_1:61884124-61884143 Msa1205540:intron 25.0%
! TTTAATATGTCTTCCAAAAG+GGG + chr8_1:61884308-61884327 None:intergenic 25.0%
! CTTTAATATGTCTTCCAAAA+GGG + chr8_1:61884309-61884328 None:intergenic 25.0%
! TCTTTAATATGTCTTCCAAA+AGG + chr8_1:61884310-61884329 None:intergenic 25.0%
! GTATATTGTGTGAAAATTGT+TGG - chr8_1:61884365-61884384 Msa1205540:intron 25.0%
! AAGTCATATTGTAAAATAGC+TGG - chr8_1:61884841-61884860 Msa1205540:intron 25.0%
!! ATCATGCTGAATTGTATTTT+TGG + chr8_1:61885029-61885048 None:intergenic 25.0%
!!! TGGGTTTATTTTTCAGAAAT+GGG + chr8_1:61885128-61885147 None:intergenic 25.0%
!!! TTGGGTTTATTTTTCAGAAA+TGG + chr8_1:61885129-61885148 None:intergenic 25.0%
! ACAATATAACCAAAGTTTGT+AGG + chr8_1:61885180-61885199 None:intergenic 25.0%
! TAAACATCCATCCTTTATAT+AGG - chr8_1:61885322-61885341 Msa1205540:intron 25.0%
!! TTAGGAGTTAGTTTACTAAT+TGG + chr8_1:61885352-61885371 None:intergenic 25.0%
!!! TAACTCAAATTTTAACCACT+TGG - chr8_1:61885643-61885662 Msa1205540:intron 25.0%
!!! GATACTAACTGATTACTTTT+TGG + chr8_1:61886053-61886072 None:intergenic 25.0%
! AACACAATTTGATTGATCAT+TGG - chr8_1:61886074-61886093 Msa1205540:intron 25.0%
!!! TGGCACAGTTTTTTTTTTTT+AGG + chr8_1:61886260-61886279 None:intergenic 25.0%
!! CTTTAGCTCAATATTTGATT+TGG + chr8_1:61886313-61886332 None:intergenic 25.0%
! AATCAAATATTGAGCTAAAG+AGG - chr8_1:61886313-61886332 Msa1205540:intron 25.0%
!! ATGATGTGTCATTATTAGAT+TGG + chr8_1:61886382-61886401 None:intergenic 25.0%
! TATGAATCGTAACTGTTTAT+TGG - chr8_1:61886600-61886619 Msa1205540:intron 25.0%
!!! AAACTTCCAATTTATTTTCC+TGG - chr8_1:61886718-61886737 Msa1205540:intron 25.0%
!! TTTTTGCCAGGAAAATAAAT+TGG + chr8_1:61886727-61886746 None:intergenic 25.0%
! AAAAAATAGATGTTTGACAG+TGG - chr8_1:61886743-61886762 Msa1205540:intron 25.0%
! AAAAATAGATGTTTGACAGT+GGG - chr8_1:61886744-61886763 Msa1205540:intron 25.0%
!! AATTGGATTGAGCTTTTTAT+CGG + chr8_1:61886844-61886863 None:intergenic 25.0%
! CAAATCATAACAAACTAGAA+AGG - chr8_1:61887159-61887178 Msa1205540:intron 25.0%
! ATTAGATCAAGCCTTTATAT+AGG - chr8_1:61887195-61887214 Msa1205540:intron 25.0%
! GATATAGGAAGTTATAGATT+AGG + chr8_1:61887316-61887335 None:intergenic 25.0%
!! TCAAGCGTTTTCATTTATTT+CGG - chr8_1:61887546-61887565 Msa1205540:intron 25.0%
! CATTTAATCAAACTCTAGAT+TGG + chr8_1:61887780-61887799 None:intergenic 25.0%
!! TTACATATGATTGATAGTAG+TGG - chr8_1:61887955-61887974 Msa1205540:CDS 25.0%
! TGGATAGCAAATTTACTAAA+TGG - chr8_1:61887975-61887994 Msa1205540:CDS 25.0%
! ATTTACTAAATGGACAATGT+TGG - chr8_1:61887985-61888004 Msa1205540:CDS 25.0%
! GTGTTGTATGTAAATTATAC+TGG - chr8_1:61888343-61888362 Msa1205540:intron 25.0%
!! ACCAATGTAATGATATGTTT+TGG - chr8_1:61888367-61888386 Msa1205540:intron 25.0%
! TCCAAAACATATCATTACAT+TGG + chr8_1:61888371-61888390 None:intergenic 25.0%
! TAAGAGTGGAATTTAAACAT+GGG - chr8_1:61888524-61888543 Msa1205540:intron 25.0%
!!! TTTTTTCTAATTCATGTGCA+CGG - chr8_1:61888709-61888728 Msa1205540:five_prime_UTR 25.0%
! TGTTTCTGAAGATGAATCAT+CGG - chr8_1:61882786-61882805 Msa1205540:three_prime_UTR 30.0%
! TGTATTGGTCATCTATGATA+GGG + chr8_1:61882952-61882971 None:intergenic 30.0%
TCAAATGGAACTAACTGTAT+TGG + chr8_1:61882967-61882986 None:intergenic 30.0%
! ATTAGACTCAAGTTGTCAAT+AGG + chr8_1:61883153-61883172 None:intergenic 30.0%
!!! TCCATTTTTCAAGTCACATA+AGG + chr8_1:61883190-61883209 None:intergenic 30.0%
TATCGATCTATTCTCTGTTT+CGG - chr8_1:61883330-61883349 Msa1205540:CDS 30.0%
AAGTGATCAAAATGTCAATC+TGG - chr8_1:61883536-61883555 Msa1205540:intron 30.0%
AATAGAATGCAACTTATACC+TGG + chr8_1:61883666-61883685 None:intergenic 30.0%
CGAGACAAATTGAAATAACT+CGG + chr8_1:61883724-61883743 None:intergenic 30.0%
! CGAGTTATTTCAATTTGTCT+CGG - chr8_1:61883722-61883741 Msa1205540:intron 30.0%
AAAATGATATCTGTCAATGG+AGG + chr8_1:61883946-61883965 None:intergenic 30.0%
CATAATCATGTGGTTTATCT+TGG - chr8_1:61884005-61884024 Msa1205540:intron 30.0%
AAAAGAAAGGATGAAAGGAA+AGG + chr8_1:61884077-61884096 None:intergenic 30.0%
CAAACAAAAGAAAGGATGAA+AGG + chr8_1:61884082-61884101 None:intergenic 30.0%
!!! TAATTTTTTTTTGTTGGGGG+GGG - chr8_1:61884125-61884144 Msa1205540:intron 30.0%
AGAATCTAGACAAGTTCAAA+AGG + chr8_1:61884276-61884295 None:intergenic 30.0%
TTAATATGTCTTCCAAAAGG+GGG + chr8_1:61884307-61884326 None:intergenic 30.0%
AAGAATAGTTATATGCACCA+TGG - chr8_1:61884418-61884437 Msa1205540:intron 30.0%
TCAAATTGTGATTGAGTTTG+CGG + chr8_1:61884448-61884467 None:intergenic 30.0%
TTTATGTAGATACTTGCAAC+TGG - chr8_1:61884559-61884578 Msa1205540:intron 30.0%
TAGTACACAGCAATTAATCT+CGG + chr8_1:61884643-61884662 None:intergenic 30.0%
AGAGTTAAGATTGTTGCATT+AGG - chr8_1:61884716-61884735 Msa1205540:intron 30.0%
GAGTTAAGATTGTTGCATTA+GGG - chr8_1:61884717-61884736 Msa1205540:intron 30.0%
TAAGAATAGAAATCTCAGCT+GGG + chr8_1:61884897-61884916 None:intergenic 30.0%
ATAAGAATAGAAATCTCAGC+TGG + chr8_1:61884898-61884917 None:intergenic 30.0%
! ACAATTCAGCATGATTTTCT+AGG - chr8_1:61885034-61885053 Msa1205540:intron 30.0%
!!! GTTTTGATTGTGGGATTATT+GGG - chr8_1:61885064-61885083 Msa1205540:intron 30.0%
TAATGATTTCGGAAGAGTTT+GGG + chr8_1:61885147-61885166 None:intergenic 30.0%
AAAGACTACAAACATGCAAT+GGG + chr8_1:61885225-61885244 None:intergenic 30.0%
! TATTTTTCTCTTCTCTTCCA+TGG + chr8_1:61885286-61885305 None:intergenic 30.0%
TGGTTAACCTATATAAAGGA+TGG + chr8_1:61885332-61885351 None:intergenic 30.0%
TGTTAATAACACTTTCAGCT+TGG - chr8_1:61885411-61885430 Msa1205540:intron 30.0%
GTTAATAACACTTTCAGCTT+GGG - chr8_1:61885412-61885431 Msa1205540:intron 30.0%
! ACTCATAAACTCGAGTTTTT+AGG + chr8_1:61885508-61885527 None:intergenic 30.0%
! TGGTTAAGTCTTTTGTCTTA+TGG + chr8_1:61885609-61885628 None:intergenic 30.0%
! TTTGAGTTATAGTTTCTGCT+TGG + chr8_1:61885632-61885651 None:intergenic 30.0%
TTGTTGATGTTCTTCCTTAT+TGG + chr8_1:61885754-61885773 None:intergenic 30.0%
AGATTGGAAACTTATCGTAA+TGG - chr8_1:61886156-61886175 Msa1205540:intron 30.0%
!! GCTCAATATTTGATTTGGTT+TGG + chr8_1:61886308-61886327 None:intergenic 30.0%
! CATTCATTTTACCTGTATAC+CGG - chr8_1:61886399-61886418 Msa1205540:intron 30.0%
ACCAGAACATATAATTAGTG+AGG - chr8_1:61886550-61886569 Msa1205540:intron 30.0%
ACCTCACTAATTATATGTTC+TGG + chr8_1:61886554-61886573 None:intergenic 30.0%
GAACATATAATTAGTGAGGT+TGG - chr8_1:61886554-61886573 Msa1205540:intron 30.0%
!!! CAAACATCTATTTTTTTGCC+AGG + chr8_1:61886739-61886758 None:intergenic 30.0%
! TTCTATGTAACTTGCATATC+CGG - chr8_1:61886902-61886921 Msa1205540:intron 30.0%
! GTGATGTGTCATTATTTGAT+TGG - chr8_1:61886941-61886960 Msa1205540:intron 30.0%
! AATAGAAGTGCAGATTATTC+TGG + chr8_1:61887025-61887044 None:intergenic 30.0%
CTATTGTATAAAAAAACCGG+AGG - chr8_1:61887271-61887290 Msa1205540:intron 30.0%
!!! TAGTTTTTTACTACTACCTC+CGG + chr8_1:61887290-61887309 None:intergenic 30.0%
ACTCTAATTACAACTGCATA+AGG + chr8_1:61887636-61887655 None:intergenic 30.0%
!! TGTTAGTTGCAATTTTAAGG+TGG - chr8_1:61887665-61887684 Msa1205540:intron 30.0%
!! TGTTAGTTGCAATTTTAAGG+TGG - chr8_1:61887665-61887684 Msa1205540:intron 30.0%
ATGGGTAGAATAAAAATGCA+AGG + chr8_1:61887926-61887945 None:intergenic 30.0%
GTTTGATAGAGATATAAGAG+CGG - chr8_1:61888104-61888123 Msa1205540:intron 30.0%
TTTGATAGAGATATAAGAGC+GGG - chr8_1:61888105-61888124 Msa1205540:intron 30.0%
! GTACTTTTGAACTCTTTCTT+TGG + chr8_1:61888222-61888241 None:intergenic 30.0%
!! TAGTCACTTCATTGATTTCT+GGG + chr8_1:61888279-61888298 None:intergenic 30.0%
ACATGCATATGTTTAGTTGA+AGG + chr8_1:61888325-61888344 None:intergenic 30.0%
!!! AGAGTTATTTTGAACTCTTG+TGG - chr8_1:61888450-61888469 Msa1205540:intron 30.0%
TTAAATTCCACTCTTAGCTT+TGG + chr8_1:61888520-61888539 None:intergenic 30.0%
CTAAGAGTGGAATTTAAACA+TGG - chr8_1:61888523-61888542 Msa1205540:intron 30.0%
AACTTATTGCAGTTGTAGCT+TGG - chr8_1:61882724-61882743 Msa1205540:three_prime_UTR 35.0%
GAAATTGAAGGAAACCTTGA+TGG + chr8_1:61882881-61882900 None:intergenic 35.0%
! CTGTATTGGTCATCTATGAT+AGG + chr8_1:61882953-61882972 None:intergenic 35.0%
AACTTGAGTCTAATTCTTCG+CGG - chr8_1:61883159-61883178 Msa1205540:three_prime_UTR 35.0%
GCCTTATGTGACTTGAAAAA+TGG - chr8_1:61883186-61883205 Msa1205540:three_prime_UTR 35.0%
TTTATATGCGTATGAGCACA+TGG + chr8_1:61883283-61883302 None:intergenic 35.0%
! AATTTTCACTCTGAGTCTGA+AGG - chr8_1:61883972-61883991 Msa1205540:intron 35.0%
GAAAGGTGACATACATACAA+AGG + chr8_1:61884060-61884079 None:intergenic 35.0%
!!! AATTTTTTTTTGTTGGGGGG+GGG - chr8_1:61884126-61884145 Msa1205540:intron 35.0%
! TTCTGATATTTTCCCCCTTT+TGG - chr8_1:61884292-61884311 Msa1205540:intron 35.0%
AATAGTTATATGCACCATGG+TGG - chr8_1:61884421-61884440 Msa1205540:intron 35.0%
CAAATTGTGATTGAGTTTGC+GGG + chr8_1:61884447-61884466 None:intergenic 35.0%
GCAAACTCAATCACAATTTG+AGG - chr8_1:61884447-61884466 Msa1205540:intron 35.0%
TGTCTCATTCTCTTCAATCT+TGG - chr8_1:61884586-61884605 Msa1205540:intron 35.0%
AATTAATCTCGGGTTATACC+TGG + chr8_1:61884632-61884651 None:intergenic 35.0%
AGTACACAGCAATTAATCTC+GGG + chr8_1:61884642-61884661 None:intergenic 35.0%
! ACTATTTTGTCCTGAAGTGT+TGG - chr8_1:61884659-61884678 Msa1205540:intron 35.0%
AAGAATAGAAATCTCAGCTG+GGG + chr8_1:61884896-61884915 None:intergenic 35.0%
AAAACATACGAGATGAAAGC+TGG + chr8_1:61884935-61884954 None:intergenic 35.0%
! TTTGAGTTTGCAAACAACAC+AGG + chr8_1:61884995-61885014 None:intergenic 35.0%
! GCATGATTTTCTAGGTTCAT+TGG - chr8_1:61885042-61885061 Msa1205540:intron 35.0%
!!! AGGTTCATTGGTTTTGATTG+TGG - chr8_1:61885054-61885073 Msa1205540:intron 35.0%
!!! GGTTCATTGGTTTTGATTGT+GGG - chr8_1:61885055-61885074 Msa1205540:intron 35.0%
!!! GGTTTTGATTGTGGGATTAT+TGG - chr8_1:61885063-61885082 Msa1205540:intron 35.0%
CTAATGATTTCGGAAGAGTT+TGG + chr8_1:61885148-61885167 None:intergenic 35.0%
AACCAAAGTTTGTAGGACTT+GGG + chr8_1:61885173-61885192 None:intergenic 35.0%
TAACCAAAGTTTGTAGGACT+TGG + chr8_1:61885174-61885193 None:intergenic 35.0%
TGGTTATATTGTTCCTCCTA+TGG - chr8_1:61885188-61885207 Msa1205540:intron 35.0%
AAGACTACAAACATGCAATG+GGG + chr8_1:61885224-61885243 None:intergenic 35.0%
CAAAGACTACAAACATGCAA+TGG + chr8_1:61885226-61885245 None:intergenic 35.0%
ACGTGTTGTGTTAGTAAACA+TGG - chr8_1:61885257-61885276 Msa1205540:intron 35.0%
GTTAGTAAACATGGTATCCA+TGG - chr8_1:61885266-61885285 Msa1205540:intron 35.0%
TCTTGTGGGATTAGAGATAT+AGG + chr8_1:61885384-61885403 None:intergenic 35.0%
ATATCTCTAATCCCACAAGA+TGG - chr8_1:61885384-61885403 Msa1205540:intron 35.0%
ATTAACACCTTCCATCTTGT+GGG + chr8_1:61885398-61885417 None:intergenic 35.0%
TATTAACACCTTCCATCTTG+TGG + chr8_1:61885399-61885418 None:intergenic 35.0%
GTTTGACAATCTTGACCATA+TGG - chr8_1:61885568-61885587 Msa1205540:intron 35.0%
! TTTTGTTGATGTCAGCCATA+TGG + chr8_1:61885586-61885605 None:intergenic 35.0%
!! TAGTTTGCTTCTATCTTGAG+TGG + chr8_1:61885727-61885746 None:intergenic 35.0%
AAGCAAACTACAAGCCAATA+AGG - chr8_1:61885737-61885756 Msa1205540:intron 35.0%
GAAGCACATCATTGAACATT+TGG - chr8_1:61885782-61885801 Msa1205540:intron 35.0%
! GTTTTTGTCATGCTTTGTGA+AGG + chr8_1:61885892-61885911 None:intergenic 35.0%
!! ATTGTGTGTTGTTTGATCTC+AGG + chr8_1:61886120-61886139 None:intergenic 35.0%
TTGGAAACTTATCGTAATGG+AGG - chr8_1:61886159-61886178 Msa1205540:intron 35.0%
! TGGAAACTTATCGTAATGGA+GGG - chr8_1:61886160-61886179 Msa1205540:intron 35.0%
TTCTAACATGGATGGAACTA+TGG + chr8_1:61886211-61886230 None:intergenic 35.0%
! ATTAGTGTAACTTGCACAAC+CGG + chr8_1:61886421-61886440 None:intergenic 35.0%
TCTGGTGAAAATTTGATGAG+AGG + chr8_1:61886536-61886555 None:intergenic 35.0%
! TAGTGCTAATTTTCTCACCA+AGG - chr8_1:61886637-61886656 Msa1205540:intron 35.0%
GTCTTCAAATTGATCATCCT+TGG + chr8_1:61886657-61886676 None:intergenic 35.0%
AGGATGATCAATTTGAAGAC+AGG - chr8_1:61886657-61886676 Msa1205540:intron 35.0%
GAAAACATAGACATTGATGC+AGG - chr8_1:61886793-61886812 Msa1205540:intron 35.0%
! ATTGATGCAGGTTGGATAAT+TGG - chr8_1:61886805-61886824 Msa1205540:intron 35.0%
! ATCCGGTTTGCAAGTAAAAT+AGG - chr8_1:61886919-61886938 Msa1205540:intron 35.0%
! CACCTATTTTACTTGCAAAC+CGG + chr8_1:61886924-61886943 None:intergenic 35.0%
TTTGATTGGAGTGTGTTCAA+AGG - chr8_1:61886955-61886974 Msa1205540:intron 35.0%
TTAGCTCAAGAGAAATGCTA+GGG + chr8_1:61887000-61887019 None:intergenic 35.0%
! TTTAGCTCAAGAGAAATGCT+AGG + chr8_1:61887001-61887020 None:intergenic 35.0%
! ACTTTTTGTCCACTTGATTG+TGG + chr8_1:61887089-61887108 None:intergenic 35.0%
GGTCAACATCTTAGAGATAT+AGG + chr8_1:61887331-61887350 None:intergenic 35.0%
!! TATCTCTAAGATGTTGACCT+TGG - chr8_1:61887332-61887351 Msa1205540:intron 35.0%
TAAGATGTTGACCTTGGTTA+TGG - chr8_1:61887338-61887357 Msa1205540:intron 35.0%
AAGCACATCACAGAAGAAAT+AGG + chr8_1:61887384-61887403 None:intergenic 35.0%
! TGTTCTGTTTTCCTATCCAA+TGG - chr8_1:61887453-61887472 Msa1205540:CDS 35.0%
! TTTCCTATCCAATGGTTTTC+AGG - chr8_1:61887461-61887480 Msa1205540:CDS 35.0%
! TGAAAACGCTTGAAGTATCT+GGG + chr8_1:61887539-61887558 None:intergenic 35.0%
! ATGAAAACGCTTGAAGTATC+TGG + chr8_1:61887540-61887559 None:intergenic 35.0%
TAATTACAACTGCATAAGGC+AGG + chr8_1:61887632-61887651 None:intergenic 35.0%
!!! TAGTTGCAATTTTAAGGTGG+TGG - chr8_1:61887668-61887687 Msa1205540:intron 35.0%
!!! TAGTTGCAATTTTAAGGTGG+TGG - chr8_1:61887668-61887687 Msa1205540:intron 35.0%
AATGCAAGGTAGTCAAGATT+GGG + chr8_1:61887912-61887931 None:intergenic 35.0%
AAATGCAAGGTAGTCAAGAT+TGG + chr8_1:61887913-61887932 None:intergenic 35.0%
TCAATGTTTGGATTATGACG+AGG + chr8_1:61888148-61888167 None:intergenic 35.0%
!! CTAGTCACTTCATTGATTTC+TGG + chr8_1:61888280-61888299 None:intergenic 35.0%
GCATATGTTTAGTTGAAGGA+AGG + chr8_1:61888321-61888340 None:intergenic 35.0%
AGAAACGGAGTTATTCACAA+GGG + chr8_1:61888404-61888423 None:intergenic 35.0%
AAGAAACGGAGTTATTCACA+AGG + chr8_1:61888405-61888424 None:intergenic 35.0%
CAAACTCAAACAGAAACCAA+GGG + chr8_1:61888430-61888449 None:intergenic 35.0%
TCAAACTCAAACAGAAACCA+AGG + chr8_1:61888431-61888450 None:intergenic 35.0%
! TAGCTTGGTTGTGTTGACAT+TGG - chr8_1:61882739-61882758 Msa1205540:three_prime_UTR 40.0%
! AGCTTGGTTGTGTTGACATT+GGG - chr8_1:61882740-61882759 Msa1205540:three_prime_UTR 40.0%
AGATGAATCATCGGAGAACA+AGG - chr8_1:61882795-61882814 Msa1205540:three_prime_UTR 40.0%
GAAATCGTCCTCAAAACCAT+CGG - chr8_1:61882820-61882839 Msa1205540:three_prime_UTR 40.0%
AAGGAAACCTTGATGGAAGA+GGG + chr8_1:61882874-61882893 None:intergenic 40.0%
! CGATGATGACGATGAAGATT+TGG - chr8_1:61883487-61883506 Msa1205540:intron 40.0%
!! TTTCCACCGACTTGATGATT+GGG + chr8_1:61883604-61883623 None:intergenic 40.0%
!!! TTTTCCACCGACTTGATGAT+TGG + chr8_1:61883605-61883624 None:intergenic 40.0%
! CATGATAAGTTGAAGCTTCC+AGG - chr8_1:61883645-61883664 Msa1205540:intron 40.0%
CATGGGTTCTCATAATCATG+TGG - chr8_1:61883995-61884014 Msa1205540:intron 40.0%
!!! ATTTTTTTTTGTTGGGGGGG+GGG - chr8_1:61884127-61884146 Msa1205540:intron 40.0%
TTCACCTTGTCGAATGATTC+AGG - chr8_1:61884175-61884194 Msa1205540:intron 40.0%
TCACCTTGTCGAATGATTCA+GGG - chr8_1:61884176-61884195 Msa1205540:intron 40.0%
CTAGACAAGTTCAAAAGGCT+TGG + chr8_1:61884271-61884290 None:intergenic 40.0%
GATTGTGGGATTATTGGGAA+TGG - chr8_1:61885069-61885088 Msa1205540:intron 40.0%
GACTTGGGGTCTAATGATTT+CGG + chr8_1:61885158-61885177 None:intergenic 40.0%
ACCAAAGTTTGTAGGACTTG+GGG + chr8_1:61885172-61885191 None:intergenic 40.0%
! TTTATGAGTCGATTCCACCT+AGG - chr8_1:61885519-61885538 Msa1205540:intron 40.0%
! TACGTCAACATGTTTTGCCT+AGG + chr8_1:61885539-61885558 None:intergenic 40.0%
GAGTTATAGTTTCTGCTTGG+TGG + chr8_1:61885629-61885648 None:intergenic 40.0%
CGCATCAGTAGAACCAATTA+AGG - chr8_1:61885672-61885691 Msa1205540:intron 40.0%
TTTACAGGGCATGTAGGAAT+TGG + chr8_1:61885834-61885853 None:intergenic 40.0%
! TTTGGAGCCTATGGTTTACA+GGG + chr8_1:61885848-61885867 None:intergenic 40.0%
AACTTGGTTGTTGTCCTGTT+TGG + chr8_1:61885866-61885885 None:intergenic 40.0%
TGCTTTGTGAAGGTTGAACT+TGG + chr8_1:61885882-61885901 None:intergenic 40.0%
!! GCAACTAGTTCTAACATGGA+TGG + chr8_1:61886219-61886238 None:intergenic 40.0%
!! CACTGCAACTAGTTCTAACA+TGG + chr8_1:61886223-61886242 None:intergenic 40.0%
TGTTAGAACTAGTTGCAGTG+CGG - chr8_1:61886223-61886242 Msa1205540:intron 40.0%
TCTAAGTGGAAACAGCATCT+TGG + chr8_1:61886280-61886299 None:intergenic 40.0%
TTGAGCTAAAGAGGAATGCT+AGG - chr8_1:61886322-61886341 Msa1205540:intron 40.0%
TGAGCTAAAGAGGAATGCTA+GGG - chr8_1:61886323-61886342 Msa1205540:intron 40.0%
!! AGGTTGTGATTGAGTTGAGA+CGG + chr8_1:61886516-61886535 None:intergenic 40.0%
GTTGTTCCCATGACAGATTT+GGG - chr8_1:61886679-61886698 Msa1205540:intron 40.0%
TTGTTCCCATGACAGATTTG+GGG - chr8_1:61886680-61886699 Msa1205540:intron 40.0%
ACATAGACATTGATGCAGGT+TGG - chr8_1:61886797-61886816 Msa1205540:intron 40.0%
! TGTTCAAAGGAGTGTGTTAG+AGG - chr8_1:61886968-61886987 Msa1205540:intron 40.0%
! GTTCAAAGGAGTGTGTTAGA+GGG - chr8_1:61886969-61886988 Msa1205540:intron 40.0%
GATTTCGAGCAAGTTACTCA+AGG + chr8_1:61887051-61887070 None:intergenic 40.0%
CAAAGACAACCACAATCAAG+TGG - chr8_1:61887077-61887096 Msa1205540:intron 40.0%
! GCATGAAGCACATGATAATG+AGG + chr8_1:61887122-61887141 None:intergenic 40.0%
AAAGATAGCAGCCATAACCA+AGG + chr8_1:61887352-61887371 None:intergenic 40.0%
AAACAGTGCCTGAAAACCAT+TGG + chr8_1:61887472-61887491 None:intergenic 40.0%
! GCACTGTTTTGTGTTCTGAT+TGG - chr8_1:61887483-61887502 Msa1205540:intron 40.0%
TTTGGATTATGACGAGGACA+AGG + chr8_1:61888142-61888161 None:intergenic 40.0%
TGCGAGAAGACATCAATGTT+TGG + chr8_1:61888160-61888179 None:intergenic 40.0%
!! GTCAATAGCTCTGAGTGATT+GGG + chr8_1:61888196-61888215 None:intergenic 40.0%
!! AGTCAATAGCTCTGAGTGAT+TGG + chr8_1:61888197-61888216 None:intergenic 40.0%
!! ACTTCATTGATTTCTGGGCT+GGG + chr8_1:61888274-61888293 None:intergenic 40.0%
AGAAACCAAGGGACAAGAAA+CGG + chr8_1:61888419-61888438 None:intergenic 40.0%
!! ATGCTTTGGGACATATACAG+AGG - chr8_1:61888482-61888501 Msa1205540:intron 40.0%
! TTGGTTGTGTTGACATTGGG+CGG - chr8_1:61882743-61882762 Msa1205540:three_prime_UTR 45.0%
GAAGGAAACCTTGATGGAAG+AGG + chr8_1:61882875-61882894 None:intergenic 45.0%
AGCTTCCCCAATCATCAAGT+CGG - chr8_1:61883595-61883614 Msa1205540:intron 45.0%
!! TTCCACCGACTTGATGATTG+GGG + chr8_1:61883603-61883622 None:intergenic 45.0%
!! AAAGGTGCTGTTTGCATGTG+AGG - chr8_1:61883766-61883785 Msa1205540:intron 45.0%
ATCCCATCTATGAGCAACAG+GGG + chr8_1:61884031-61884050 None:intergenic 45.0%
GATCCCATCTATGAGCAACA+GGG + chr8_1:61884032-61884051 None:intergenic 45.0%
AGATCCCATCTATGAGCAAC+AGG + chr8_1:61884033-61884052 None:intergenic 45.0%
GTTGCTCATAGATGGGATCT+CGG - chr8_1:61884033-61884052 Msa1205540:intron 45.0%
!!! TTTTTTTTTGTTGGGGGGGG+GGG - chr8_1:61884128-61884147 Msa1205540:intron 45.0%
ATGCCCTGAATCATTCGACA+AGG + chr8_1:61884182-61884201 None:intergenic 45.0%
GCTTGGTCTGATTGTTAGCT+GGG + chr8_1:61884254-61884273 None:intergenic 45.0%
! AATCTTGGAAAGCGCAAAGC+TGG - chr8_1:61884601-61884620 Msa1205540:intron 45.0%
TCAACTTGCACCAACACTTC+AGG + chr8_1:61884672-61884691 None:intergenic 45.0%
CTTCTTCTTGAAGCCAGTGA+AGG + chr8_1:61884744-61884763 None:intergenic 45.0%
TGGGATTATTGGGAATGGAC+TGG - chr8_1:61885074-61885093 Msa1205540:intron 45.0%
TGGAAACATAGCCATCATGC+TGG - chr8_1:61885094-61885113 Msa1205540:intron 45.0%
ACCCCAAGTCCTACAAACTT+TGG - chr8_1:61885168-61885187 Msa1205540:intron 45.0%
CTCTAATCCCACAAGATGGA+AGG - chr8_1:61885388-61885407 Msa1205540:intron 45.0%
! GTCAACATGTTTTGCCTAGG+TGG + chr8_1:61885536-61885555 None:intergenic 45.0%
! GTAGAACCAATTAAGGCACC+AGG - chr8_1:61885679-61885698 Msa1205540:intron 45.0%
GTTAAGCCTGGTGCCTTAAT+TGG + chr8_1:61885688-61885707 None:intergenic 45.0%
GAGTGGTTGAGTACTCTTGA+CGG + chr8_1:61885710-61885729 None:intergenic 45.0%
CTATGGTTTACAGGGCATGT+AGG + chr8_1:61885840-61885859 None:intergenic 45.0%
CTACATGCCCTGTAAACCAT+AGG - chr8_1:61885838-61885857 Msa1205540:intron 45.0%
! GTTTGGAGCCTATGGTTTAC+AGG + chr8_1:61885849-61885868 None:intergenic 45.0%
GTAAACCATAGGCTCCAAAC+AGG - chr8_1:61885849-61885868 Msa1205540:intron 45.0%
AGCAGTGATGTACTTGGAGT+AGG - chr8_1:61885975-61885994 Msa1205540:intron 45.0%
GCAGTGATGTACTTGGAGTA+GGG - chr8_1:61885976-61885995 Msa1205540:intron 45.0%
! GATCTCAGGAGCATGACAAT+TGG + chr8_1:61886106-61886125 None:intergenic 45.0%
TGCAAGCGTCAAAGCTAGAT+TGG - chr8_1:61886140-61886159 Msa1205540:intron 45.0%
TAATGGAGGGTCAAAGAAGC+TGG - chr8_1:61886173-61886192 Msa1205540:intron 45.0%
!! TTGGTTTGGTGCTGTCTAAG+TGG + chr8_1:61886294-61886313 None:intergenic 45.0%
ACCCTCTAACACTGTCCTTT+GGG - chr8_1:61886350-61886369 Msa1205540:intron 45.0%
TTAGATTGGAGTGTGCCCAA+AGG + chr8_1:61886368-61886387 None:intergenic 45.0%
AACTTGCACAACCGGTATAC+AGG + chr8_1:61886413-61886432 None:intergenic 45.0%
!! TTGTGATTGAGTTGAGACGG+TGG + chr8_1:61886513-61886532 None:intergenic 45.0%
GGTTGTTCCCATGACAGATT+TGG - chr8_1:61886678-61886697 Msa1205540:intron 45.0%
TGTTCCCATGACAGATTTGG+GGG - chr8_1:61886681-61886700 Msa1205540:intron 45.0%
AAACCCCCCAAATCTGTCAT+GGG + chr8_1:61886688-61886707 None:intergenic 45.0%
AAAACCCCCCAAATCTGTCA+TGG + chr8_1:61886689-61886708 None:intergenic 45.0%
CTGTGATGTGCTTCTACTTC+TGG - chr8_1:61887391-61887410 Msa1205540:CDS 45.0%
! GCTTCTACTTCTGGTTAGTG+TGG - chr8_1:61887400-61887419 Msa1205540:CDS 45.0%
AAACTAGCAACAAGCCAAGC+AGG + chr8_1:61887432-61887451 None:intergenic 45.0%
GTGCCTGAAAACCATTGGAT+AGG + chr8_1:61887467-61887486 None:intergenic 45.0%
AAGACTTCAGAGAGCTTCCA+GGG - chr8_1:61888064-61888083 Msa1205540:intron 45.0%
!! CACTTCATTGATTTCTGGGC+TGG + chr8_1:61888275-61888294 None:intergenic 45.0%
TAACTCCGTTTCTTGTCCCT+TGG - chr8_1:61888411-61888430 Msa1205540:intron 45.0%
TTTGAACTCTTGTGGTGCAG+TGG - chr8_1:61888458-61888477 Msa1205540:intron 45.0%
TTGAACTCTTGTGGTGCAGT+GGG - chr8_1:61888459-61888478 Msa1205540:intron 45.0%
GGACATATACAGAGGCTTGT+CGG - chr8_1:61888490-61888509 Msa1205540:intron 45.0%
GACATATACAGAGGCTTGTC+GGG - chr8_1:61888491-61888510 Msa1205540:intron 45.0%
!!! TATTTTTAATTTTTTTTTGT+TGG - chr8_1:61884119-61884138 Msa1205540:intron 5.0%
!!! ATTTTTAATTTTTTTTTGTT+GGG - chr8_1:61884120-61884139 Msa1205540:intron 5.0%
!!! TAATTTTATATATTTTAAGT+AGG - chr8_1:61887718-61887737 Msa1205540:intron 5.0%
!!! TAATTTTATATATTTTAAGT+AGG - chr8_1:61887718-61887737 Msa1205540:intron 5.0%
!!! TTATTTTATTTTATTTTTGA+AGG - chr8_1:61888577-61888596 Msa1205540:CDS 5.0%
!!! TATTTTATTTTATTTTTGAA+GGG - chr8_1:61888578-61888597 Msa1205540:CDS 5.0%
! TGGTTGTGTTGACATTGGGC+GGG - chr8_1:61882744-61882763 Msa1205540:three_prime_UTR 50.0%
TGATGGAAGAGGGAACTCTC+AGG + chr8_1:61882864-61882883 None:intergenic 50.0%
GAGAGTTCCCTCTTCCATCA+AGG - chr8_1:61882864-61882883 Msa1205540:three_prime_UTR 50.0%
GTGCGCATGCAACTCAATGA+TGG - chr8_1:61883216-61883235 Msa1205540:three_prime_UTR 50.0%
CGCATGCAACTCAATGATGG+AGG - chr8_1:61883219-61883238 Msa1205540:three_prime_UTR 50.0%
CAAACCAAAGCCACCAGTGA+AGG - chr8_1:61883451-61883470 Msa1205540:intron 50.0%
CAAAGCCACCAGTGAAGGAT+GGG - chr8_1:61883456-61883475 Msa1205540:intron 50.0%
TTGTCATGCCCATCCTTCAC+TGG + chr8_1:61883467-61883486 None:intergenic 50.0%
TTCCCCAATCATCAAGTCGG+TGG - chr8_1:61883598-61883617 Msa1205540:intron 50.0%
!! TGTTTGCATGTGAGGCGTTG+AGG - chr8_1:61883774-61883793 Msa1205540:intron 50.0%
TCACTCTGAGTCTGAAGGCA+TGG - chr8_1:61883977-61883996 Msa1205540:intron 50.0%
! CACTCTGAGTCTGAAGGCAT+GGG - chr8_1:61883978-61883997 Msa1205540:intron 50.0%
!!! TTTTTTTTGTTGGGGGGGGG+GGG - chr8_1:61884129-61884148 Msa1205540:intron 50.0%
! GGCTTGGTCTGATTGTTAGC+TGG + chr8_1:61884255-61884274 None:intergenic 50.0%
GTTGCATTAGGGACCTTCAC+TGG - chr8_1:61884728-61884747 Msa1205540:intron 50.0%
! ATGGGGAAGCGTAGAACCAT+AGG + chr8_1:61885207-61885226 None:intergenic 50.0%
ACTGATGCGTTTCTGCCAAG+TGG + chr8_1:61885661-61885680 None:intergenic 50.0%
GTACTCTTGACGGTTAAGCC+TGG + chr8_1:61885700-61885719 None:intergenic 50.0%
! GTTGTCCTGTTTGGAGCCTA+TGG + chr8_1:61885857-61885876 None:intergenic 50.0%
TACATCACTGCTGCAGGATC+TGG + chr8_1:61885967-61885986 None:intergenic 50.0%
TCCTGCAGCAGTGATGTACT+TGG - chr8_1:61885969-61885988 Msa1205540:intron 50.0%
TCCAAGTACATCACTGCTGC+AGG + chr8_1:61885973-61885992 None:intergenic 50.0%
CACCCTCTAACACTGTCCTT+TGG - chr8_1:61886349-61886368 Msa1205540:intron 50.0%
GCCCAAAGGACAGTGTTAGA+GGG + chr8_1:61886354-61886373 None:intergenic 50.0%
TGCCCAAAGGACAGTGTTAG+AGG + chr8_1:61886355-61886374 None:intergenic 50.0%
TGGCGATAACATCAAGGGGA+GGG + chr8_1:61886493-61886512 None:intergenic 50.0%
ACGGTGGCGATAACATCAAG+GGG + chr8_1:61886497-61886516 None:intergenic 50.0%
GACGGTGGCGATAACATCAA+GGG + chr8_1:61886498-61886517 None:intergenic 50.0%
AGACGGTGGCGATAACATCA+AGG + chr8_1:61886499-61886518 None:intergenic 50.0%
GTTCCCATGACAGATTTGGG+GGG - chr8_1:61886682-61886701 Msa1205540:intron 50.0%
GAAGACTTCAGAGAGCTTCC+AGG - chr8_1:61888063-61888082 Msa1205540:intron 50.0%
CAGGGACGCTAAATGCAGAT+CGG - chr8_1:61888082-61888101 Msa1205540:intron 50.0%
CGGGATTCCAAAGCTAAGAG+TGG - chr8_1:61888510-61888529 Msa1205540:intron 50.0%
! GGTTGTGTTGACATTGGGCG+GGG - chr8_1:61882745-61882764 Msa1205540:three_prime_UTR 55.0%
!! GAGCTGGACCGATGGTTTTG+AGG + chr8_1:61882831-61882850 None:intergenic 55.0%
CCATCCTTCACTGGTGGCTT+TGG + chr8_1:61883458-61883477 None:intergenic 55.0%
CCAAAGCCACCAGTGAAGGA+TGG - chr8_1:61883455-61883474 Msa1205540:intron 55.0%
TCATGCCCATCCTTCACTGG+TGG + chr8_1:61883464-61883483 None:intergenic 55.0%
TGGCCCCTGTTGCTCATAGA+TGG - chr8_1:61884025-61884044 Msa1205540:intron 55.0%
GGCCCCTGTTGCTCATAGAT+GGG - chr8_1:61884026-61884045 Msa1205540:intron 55.0%
!!! TTTTTTTGTTGGGGGGGGGG+GGG - chr8_1:61884130-61884149 Msa1205540:intron 55.0%
ATTGAGTTTGCGGGCCACCA+TGG + chr8_1:61884438-61884457 None:intergenic 55.0%
GGGTGACTAGACCAGCATGA+TGG + chr8_1:61885108-61885127 None:intergenic 55.0%
! GGGAAGCGTAGAACCATAGG+AGG + chr8_1:61885204-61885223 None:intergenic 55.0%
AGGATCTGGAAGGTGGTGTG+TGG + chr8_1:61885953-61885972 None:intergenic 55.0%
TCACTGCTGCAGGATCTGGA+AGG + chr8_1:61885963-61885982 None:intergenic 55.0%
CGATAACATCAAGGGGAGGG+AGG + chr8_1:61886490-61886509 None:intergenic 55.0%
GTGGCGATAACATCAAGGGG+AGG + chr8_1:61886494-61886513 None:intergenic 55.0%
TAGTGTGGTGCTTGCCTGCT+TGG - chr8_1:61887415-61887434 Msa1205540:CDS 55.0%
CGATCTGCATTTAGCGTCCC+TGG + chr8_1:61888084-61888103 None:intergenic 55.0%
TGTGGTGCAGTGGGATGCTT+TGG - chr8_1:61888468-61888487 Msa1205540:intron 55.0%
GTGGTGCAGTGGGATGCTTT+GGG - chr8_1:61888469-61888488 Msa1205540:intron 55.0%
CATTGGGCGGGGATCAGCAA+TGG - chr8_1:61882756-61882775 Msa1205540:three_prime_UTR 60.0%
GAGGGAACTCTCAGGCGAGA+GGG + chr8_1:61882856-61882875 None:intergenic 60.0%
AGAGGGAACTCTCAGGCGAG+AGG + chr8_1:61882857-61882876 None:intergenic 60.0%
!!! TTTTTTGTTGGGGGGGGGGG+GGG - chr8_1:61884131-61884150 Msa1205540:intron 60.0%
AGCGCAAAGCTGGTGACTCC+AGG - chr8_1:61884611-61884630 Msa1205540:intron 60.0%
GGAAGGTGGTGTGTGGCTAG+TGG + chr8_1:61885946-61885965 None:intergenic 60.0%
CTGCTGCAGGATCTGGAAGG+TGG + chr8_1:61885960-61885979 None:intergenic 60.0%
AGAGGGTGGAGCTGGACCGA+TGG + chr8_1:61882839-61882858 None:intergenic 65.0%
GGAACTCTCAGGCGAGAGGG+TGG + chr8_1:61882853-61882872 None:intergenic 65.0%
! TTTTTGTTGGGGGGGGGGGG+GGG - chr8_1:61884132-61884151 Msa1205540:intron 65.0%
CTCAGGCGAGAGGGTGGAGC+TGG + chr8_1:61882847-61882866 None:intergenic 70.0%
! TTTTGTTGGGGGGGGGGGGG+GGG - chr8_1:61884133-61884152 Msa1205540:intron 70.0%
TTTGTTGGGGGGGGGGGGGG+GGG - chr8_1:61884134-61884153 Msa1205540:intron 75.0%
! TTGTTGGGGGGGGGGGGGGG+GGG - chr8_1:61884135-61884154 Msa1205540:intron 80.0%
! TGTTGGGGGGGGGGGGGGGG+GGG - chr8_1:61884136-61884155 Msa1205540:intron 85.0%
! GGGGGGGGGGGGGGGGGCAA+GGG - chr8_1:61884142-61884161 Msa1205540:intron 90.0%
! GGGGGGGGGGGGGGGGGGCA+AGG - chr8_1:61884141-61884160 Msa1205540:intron 95.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 61882715 61888740 61882715 ID=Msa1205540;Name=Msa1205540
chr8_1 mRNA 61882715 61888740 61882715 ID=Msa1205540-mRNA-1;Parent=Msa1205540;Name=Msa1205540-mRNA-1;_AED=0.10;_eAED=0.10;_QI=60|1|1|1|1|1|7|603|222
chr8_1 exon 61882715 61883411 61882715 ID=Msa1205540-mRNA-1:exon:20062;Parent=Msa1205540-mRNA-1
chr8_1 exon 61886823 61886887 61886823 ID=Msa1205540-mRNA-1:exon:20061;Parent=Msa1205540-mRNA-1
chr8_1 exon 61887390 61887499 61887390 ID=Msa1205540-mRNA-1:exon:20060;Parent=Msa1205540-mRNA-1
chr8_1 exon 61887789 61887867 61887789 ID=Msa1205540-mRNA-1:exon:20059;Parent=Msa1205540-mRNA-1
chr8_1 exon 61887947 61888023 61887947 ID=Msa1205540-mRNA-1:exon:20058;Parent=Msa1205540-mRNA-1
chr8_1 exon 61888215 61888347 61888215 ID=Msa1205540-mRNA-1:exon:20057;Parent=Msa1205540-mRNA-1
chr8_1 exon 61888570 61888740 61888570 ID=Msa1205540-mRNA-1:exon:20056;Parent=Msa1205540-mRNA-1
chr8_1 five_prime_UTR 61888681 61888740 61888681 ID=Msa1205540-mRNA-1:five_prime_utr;Parent=Msa1205540-mRNA-1
chr8_1 CDS 61888570 61888680 61888570 ID=Msa1205540-mRNA-1:cds;Parent=Msa1205540-mRNA-1
chr8_1 CDS 61888215 61888347 61888215 ID=Msa1205540-mRNA-1:cds;Parent=Msa1205540-mRNA-1
chr8_1 CDS 61887947 61888023 61887947 ID=Msa1205540-mRNA-1:cds;Parent=Msa1205540-mRNA-1
chr8_1 CDS 61887789 61887867 61887789 ID=Msa1205540-mRNA-1:cds;Parent=Msa1205540-mRNA-1
chr8_1 CDS 61887390 61887499 61887390 ID=Msa1205540-mRNA-1:cds;Parent=Msa1205540-mRNA-1
chr8_1 CDS 61886823 61886887 61886823 ID=Msa1205540-mRNA-1:cds;Parent=Msa1205540-mRNA-1
chr8_1 CDS 61883318 61883411 61883318 ID=Msa1205540-mRNA-1:cds;Parent=Msa1205540-mRNA-1
chr8_1 three_prime_UTR 61882715 61883317 61882715 ID=Msa1205540-mRNA-1:three_prime_utr;Parent=Msa1205540-mRNA-1
Gene Sequence

>Msa1205540

ATGGTAGACATTGTTTCTGAAGATGAATCATCGGAGAACAAGGTTGAAATCGTCCTCAAAACCATCGGTCCAGCTCCACCCTCTCGCCTGAGAGTTCCCTCTTCCATCAAGGTGCGTGATTTGAGAAGATTAATTGCAAGTAATGGTCATTTACCTATTGACAACTTGAGTCTAATTCTTCGCGGAACTGCCTTATGTGACTTGAAAAATGGAGATGATGTGCGCATGCAACTCAATGATGGAGATAGCTTGATTGTTGCTGTCAAACCAAAGCCACCAGTGAAGGATGGGCATGACAACGATGATGACGATGAAGATTTGAAGTTTCAGCTTCCCCAATCATCAAGTCGGTGGAAAAAGAAACTATACTCTTTTCTACATGATAAGTTGAAGCTTCCAGATATCATTTTGATGGTAATTTTCACTCTGAGTCTGAAGGCATGGGTTCTCATAATCATGTGGTTTATCTTGGCCCCTGTTGCTCATAGATGGGATCTCGGACCTTTGTATATACTTGCAACTGGCTTTTGTCTCATTCTCTTCAATCTTGGAAAGCGCAAAGCTGGTGACTCCAGTGCATACTCTATCTTCAATGAAGACTTCAGAGAGCTTCCAGGGACGCTAAATGCAGATCGGTTTGATAGAGATATAAGAGCGGGACAGTTTTGA
Protein sequence

>Msa1205540

MVDIVSEDESSENKVEIVLKTIGPAPPSRLRVPSSIKVRDLRRLIASNGHLPIDNLSLILRGTALCDLKNGDDVRMQLNDGDSLIVAVKPKPPVKDGHDNDDDDEDLKFQLPQSSSRWKKKLYSFLHDKLKLPDIILMVIFTLSLKAWVLIIMWFILAPVAHRWDLGPLYILATGFCLILFNLGKRKAGDSSAYSIFNEDFRELPGTLNADRFDRDIRAGQF*