AlfalfaGEDB | Msa0839230

M. sativa cultivar zhongmu-4 / Msa0839230

KEGG: K05387
GO: GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007267 GO:0008066 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009682 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031347 GO:0031349 GO:0032870 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0042742 GO:0043200 GO:0043207 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046873 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071395 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0080134 GO:0098542 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701
PFAM: PF00497.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0839230	AES95334.1	94.421	484	15	1	1	472	500	983	0.0	932

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0839230	sp\|Q9C8E7\|GLR33_ARATH	60.426	470	162	5	1	452	462	925	0.0	571

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0839230	G7K195	94.421	484	15	1	1	472	500	983	0.0	932

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003030	Msa0839230	-0.808840	2.541480e-50	-8.615850e-47
Msa0051200	Msa0839230	0.813714	2.225341e-51	-8.615850e-47
Msa0051460	Msa0839230	0.822290	2.563581e-53	-8.615850e-47
Msa0077390	Msa0839230	0.820533	6.521619e-53	-8.615850e-47
Msa0093440	Msa0839230	0.824993	5.970847e-54	-8.615850e-47
Msa0101840	Msa0839230	0.801133	1.039574e-48	-8.615850e-47
Msa0113800	Msa0839230	0.815314	9.851072e-52	-8.615850e-47
Msa0143920	Msa0839230	0.817308	3.528180e-52	-8.615850e-47
Msa0146910	Msa0839230	-0.807491	4.925349e-50	-8.615850e-47
Msa0179860	Msa0839230	0.806604	7.587587e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0839230	MtrunA17_Chr5g0407171	94.421	484	15	1	1	472	468	951	0.0	931
Msa0839230	MtrunA17_Chr8g0370261	72.985	459	110	2	1	447	469	925	0.0	688
Msa0839230	MtrunA17_Chr3g0144141	60.407	442	156	4	1	430	507	941	0.0	550
Msa0839230	MtrunA17_Chr8g0370281	57.432	444	176	2	1	432	378	820	7.80e-174	509
Msa0839230	MtrunA17_Chr2g0322691	54.324	451	183	5	1	428	469	919	4.94e-166	492
Msa0839230	MtrunA17_Chr2g0322681	46.437	435	215	5	1	418	465	898	9.70e-139	421
Msa0839230	MtrunA17_Chr3g0136611	41.032	407	214	10	2	384	472	876	7.90e-89	291
Msa0839230	MtrunA17_Chr3g0136621	39.609	409	219	9	2	384	475	881	1.66e-85	282
Msa0839230	MtrunA17_Chr4g0046101	36.609	407	227	8	5	393	459	852	1.20e-73	249
Msa0839230	MtrunA17_Chr2g0283241	33.915	401	234	10	5	388	433	819	5.25e-69	236

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0839230	AT1G42540.1	60.426	470	162	5	1	452	462	925	0.0	571
Msa0839230	AT1G42540.4	60.426	470	162	5	1	452	462	925	0.0	571
Msa0839230	AT1G42540.2	60.426	470	162	5	1	452	462	925	0.0	571
Msa0839230	AT3G51480.4	59.955	447	165	3	1	434	454	899	0.0	560
Msa0839230	AT3G51480.1	59.955	447	165	3	1	434	454	899	0.0	560
Msa0839230	AT3G51480.2	59.955	447	165	3	1	434	364	809	0.0	559
Msa0839230	AT4G35290.4	55.111	450	182	4	1	434	464	909	1.79e-172	508
Msa0839230	AT4G35290.3	55.111	450	182	4	1	434	464	909	1.79e-172	508
Msa0839230	AT4G35290.1	55.111	450	182	4	1	434	464	909	1.79e-172	508
Msa0839230	AT4G35290.2	55.111	450	182	4	1	434	464	909	1.79e-172	508

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Find 93 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGTGATGATCCTGAGCT+AGG	0.478719	5_4:-14066720	None:intergenic
AAATTGGTATTGATGAGTCT+AGG	0.579574	5_4:+14066041	Msa0839230:CDS
AACCACATCCTTGGTGTAAA+TGG	0.226841	5_4:-14065137	None:intergenic
AACGTGATGATCCTGAGCTA+GGG	0.531390	5_4:-14066719	None:intergenic
AACTATTTAATCCAAGAAAT+TGG	0.226487	5_4:+14066025	Msa0839230:CDS
AACTTATAAGGGACAGCATA+AGG	0.436939	5_4:-14064817	None:intergenic
AAGAAAGCTGTTGTACTGTG+AGG	0.686762	5_4:-14065928	None:intergenic
AAGCTTTCAATGCCTTTAAT+GGG	0.306277	5_4:-14065953	None:intergenic
AAGGGACAGCATAAGGCAAT+AGG	0.454426	5_4:-14064810	None:intergenic
AAGTTTATTCCATATGGGGA+TGG	0.544461	5_4:+14064835	Msa0839230:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGGAAGGCTATTAAGAAT+CGG	+	chr5_4:14064688-14064707	Msa0839230:CDS	30.0%
TACAACAAGAACAAAAATGG+TGG	+	chr5_4:14065028-14065047	Msa0839230:CDS	30.0%
ACTAAACCAGACTCAATATA+TGG	-	chr5_4:14065065-14065084	None:intergenic	30.0%
TATTAGTTGGAACTGTTGTT+TGG	+	chr5_4:14065180-14065199	Msa0839230:CDS	30.0%
ATTGCATGCATTATTAGCAT+TGG	-	chr5_4:14065343-14065362	None:intergenic	30.0%
TAATGCATGCAATATTCATG+TGG	+	chr5_4:14065350-14065369	Msa0839230:intron	30.0%
ATTCTACCATAAGCGAAAAT+TGG	-	chr5_4:14065621-14065640	None:intergenic	30.0%
TTGTTTGTGTTGTATTTGAC+AGG	+	chr5_4:14065683-14065702	Msa0839230:intron	30.0%
TATGTCATAGAAGACAGAAT+CGG	-	chr5_4:14065747-14065766	None:intergenic	30.0%
TCTGTCTTCTATGACATATA+TGG	+	chr5_4:14065749-14065768	Msa0839230:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	14064688	14067134	14064688	ID=Msa0839230;Name=Msa0839230
chr5_4	mRNA	14064688	14067134	14064688	ID=Msa0839230-mRNA-1;Parent=Msa0839230;Name=Msa0839230-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|0.75\|0.6\|1\|1\|1\|5\|181\|472
chr5_4	exon	14064688	14064906	14064688	ID=Msa0839230-mRNA-1:exon:6162;Parent=Msa0839230-mRNA-1
chr5_4	exon	14064993	14065270	14064993	ID=Msa0839230-mRNA-1:exon:6163;Parent=Msa0839230-mRNA-1
chr5_4	exon	14065705	14065736	14065705	ID=Msa0839230-mRNA-1:exon:6164;Parent=Msa0839230-mRNA-1
chr5_4	exon	14065828	14066198	14065828	ID=Msa0839230-mRNA-1:exon:6165;Parent=Msa0839230-mRNA-1
chr5_4	exon	14066435	14067134	14066435	ID=Msa0839230-mRNA-1:exon:6166;Parent=Msa0839230-mRNA-1
chr5_4	CDS	14064688	14064906	14064688	ID=Msa0839230-mRNA-1:cds;Parent=Msa0839230-mRNA-1
chr5_4	CDS	14064993	14065270	14064993	ID=Msa0839230-mRNA-1:cds;Parent=Msa0839230-mRNA-1
chr5_4	CDS	14065705	14065736	14065705	ID=Msa0839230-mRNA-1:cds;Parent=Msa0839230-mRNA-1
chr5_4	CDS	14065828	14066198	14065828	ID=Msa0839230-mRNA-1:cds;Parent=Msa0839230-mRNA-1
chr5_4	CDS	14066435	14066953	14066435	ID=Msa0839230-mRNA-1:cds;Parent=Msa0839230-mRNA-1
chr5_4	three_prime_UTR	14066954	14067134	14066954	ID=Msa0839230-mRNA-1:three_prime_utr;Parent=Msa0839230-mRNA-1

Gene Sequence

>Msa0839230

AATGGAAGGCTATTAAGAATCGGAGTACCAATAGGCGTTAGTTACCGCCAATTTGTCTCGCAAGTACCAGGCACAGATACATTTCAAGGATTCTGCATTGATGTATTTCTTTCTGCAGTTAACCTATTGCCTTATGCTGTCCCTTATAAGTTTATTCCATATGGGGATGGTAAGAACAATCCTAGTAACACCGAGCTTGTCCGTCTGATAACAACTGGTGAATTTGACGGTGCAGTAGGTGACATTGCAATTACTACAACAAGAACAAAAATGGTGGATTTTACTCAGCCATATATTGAGTCTGGTTTAGTGGTAGTAGCACCTGTTAGGGAGACAGAAACTAGTGCTTTGGCCTTTTTGGCTCCATTTACACCAAGGATGTGGTTTGTCACAGCTCTCTTTTTCATATTAGTTGGAACTGTTGTTTGGATTTTGGAGCATAGGGTGAATGATGAATTTAGAGGACCACCTAAAAAACAAATGGTTACTATTTTTTGGTTTAGCTTTTCAACAATGTTCTTTTCACATAGGGAAAATACAGTGAGCACATTTGGTCGTTGTGTGCTACTTATATGGTTATTTGTAGTTCTTATAATTACTTCAAGTTACACAGCAAGTCTAACATCAATCCTCACAGTACAACAGCTTTCTTCCCCCATTAAAGGCATTGAAAGCTTAGTAATTGGCAAAGAGCCAATTGGTTACACTCAAGGTTCTTTTTCTAAAAACTATTTAATCCAAGAAATTGGTATTGATGAGTCTAGGCTTGTTGCTTTAAAAACACCTGAAGAAGCTGCTAGAGCACTTGAGAAGGGTCCTCAAAATGGCGGCGTTGCTGCTTATATCGATCAACGTGCCTATATTGACATCTTCCTTGCAAACCGGTGTAAATTTACTATTGGCTTTCCAAGAGACTCACCGTTAGCAATTGACCTATCAACTGCCATTTTGCAAATGGTAGACAATGGGGACTTGCAAAGGATTCATGACAAATGGCTTTTGAGTAGAGCTTGTTTAACACAAGGTGCAAAGCTTGAAGTTCAAAGACTCAAACTAAAAAGCTTTTGGGGACTGTATGTGATCTGTGGATCAGCATGTTTGGTTGCTCTACTAATATACTTCATACGGATAATTAGACAGTACATCAAGCACCGCTCAGAGGAACTTGATTCTCCTGACCAAAACCCTAGCTCAGGATCATCACGTTTGAAAAATTTCATGTCCTTTGTAGATGAAAAAGAAGAGACTGTTAAGAACCGATCAAAGAGAAAGAAAATGGAGAGAATCTCTTATAGAGGTAGTGAGGGAGGATCATCCTCCATCATCTCCAATAAAGATTATGATGCTCAGCCATCTCCACGCATAGGTGATTCTGTTCCTAATGATGGAAGTGAACAAGTATTTGTCAAAGTGGTGTAA

Protein sequence

>Msa0839230

NGRLLRIGVPIGVSYRQFVSQVPGTDTFQGFCIDVFLSAVNLLPYAVPYKFIPYGDGKNNPSNTELVRLITTGEFDGAVGDIAITTTRTKMVDFTQPYIESGLVVVAPVRETETSALAFLAPFTPRMWFVTALFFILVGTVVWILEHRVNDEFRGPPKKQMVTIFWFSFSTMFFSHRENTVSTFGRCVLLIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIESLVIGKEPIGYTQGSFSKNYLIQEIGIDESRLVALKTPEEAARALEKGPQNGGVAAYIDQRAYIDIFLANRCKFTIGFPRDSPLAIDLSTAILQMVDNGDLQRIHDKWLLSRACLTQGAKLEVQRLKLKSFWGLYVICGSACLVALLIYFIRIIRQYIKHRSEELDSPDQNPSSGSSRLKNFMSFVDEKEETVKNRSKRKKMERISYRGSEGGSSSIISNKDYDAQPSPRIGDSVPNDGSEQVFVKVV*