Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839230 | AES95334.1 | 94.421 | 484 | 15 | 1 | 1 | 472 | 500 | 983 | 0.0 | 932 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839230 | sp|Q9C8E7|GLR33_ARATH | 60.426 | 470 | 162 | 5 | 1 | 452 | 462 | 925 | 0.0 | 571 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839230 | G7K195 | 94.421 | 484 | 15 | 1 | 1 | 472 | 500 | 983 | 0.0 | 932 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003030 | Msa0839230 | -0.808840 | 2.541480e-50 | -8.615850e-47 |
| Msa0051200 | Msa0839230 | 0.813714 | 2.225341e-51 | -8.615850e-47 |
| Msa0051460 | Msa0839230 | 0.822290 | 2.563581e-53 | -8.615850e-47 |
| Msa0077390 | Msa0839230 | 0.820533 | 6.521619e-53 | -8.615850e-47 |
| Msa0093440 | Msa0839230 | 0.824993 | 5.970847e-54 | -8.615850e-47 |
| Msa0101840 | Msa0839230 | 0.801133 | 1.039574e-48 | -8.615850e-47 |
| Msa0113800 | Msa0839230 | 0.815314 | 9.851072e-52 | -8.615850e-47 |
| Msa0635470 | Msa0839230 | 0.809968 | 1.455216e-50 | -8.615850e-47 |
| Msa0641020 | Msa0839230 | 0.859236 | 4.757198e-63 | -8.615850e-47 |
| Msa0641030 | Msa0839230 | 0.811626 | 6.373075e-51 | -8.615850e-47 |
| Msa0660870 | Msa0839230 | 0.862596 | 4.532291e-64 | -8.615850e-47 |
| Msa0679560 | Msa0839230 | 0.825475 | 4.594557e-54 | -8.615850e-47 |
| Msa0716750 | Msa0839230 | 0.856553 | 2.976869e-62 | -8.615850e-47 |
| Msa0724550 | Msa0839230 | 0.819106 | 1.382568e-52 | -8.615850e-47 |
| Msa0733200 | Msa0839230 | 0.815332 | 9.761011e-52 | -8.615850e-47 |
| Msa0757980 | Msa0839230 | 0.833616 | 4.815363e-56 | -8.615850e-47 |
| Msa0759300 | Msa0839230 | 0.802131 | 6.488206e-49 | -8.615850e-47 |
| Msa0765130 | Msa0839230 | 0.822006 | 2.983707e-53 | -8.615850e-47 |
| Msa0799280 | Msa0839230 | 0.859959 | 2.881547e-63 | -8.615850e-47 |
| Msa0801710 | Msa0839230 | 0.809099 | 2.236426e-50 | -8.615850e-47 |
| Msa0837500 | Msa0839230 | 0.816723 | 4.773414e-52 | -8.615850e-47 |
| Msa0839230 | Msa0883430 | 0.803612 | 3.207803e-49 | -8.615850e-47 |
| Msa0839230 | Msa0883450 | 0.800151 | 1.648916e-48 | -8.615850e-47 |
| Msa0839230 | Msa0883660 | 0.800811 | 1.209387e-48 | -8.615850e-47 |
| Msa0839230 | Msa0884890 | 0.819383 | 1.195233e-52 | -8.615850e-47 |
| Msa0839230 | Msa0886660 | 0.800751 | 1.244411e-48 | -8.615850e-47 |
| Msa0839230 | Msa0912200 | 0.818571 | 1.828315e-52 | -8.615850e-47 |
| Msa0839230 | Msa0912230 | 0.828080 | 1.096480e-54 | -8.615850e-47 |
| Msa0839230 | Msa0912470 | 0.861800 | 7.955258e-64 | -8.615850e-47 |
| Msa0839230 | Msa0986830 | 0.802136 | 6.473036e-49 | -8.615850e-47 |
| Msa0839230 | Msa1008340 | 0.838684 | 2.484314e-57 | -8.615850e-47 |
| Msa0839230 | Msa1027280 | 0.844532 | 7.133249e-59 | -8.615850e-47 |
| Msa0839230 | Msa1049950 | 0.812262 | 4.632804e-51 | -8.615850e-47 |
| Msa0839230 | Msa1130350 | 0.803777 | 2.964426e-49 | -8.615850e-47 |
| Msa0839230 | Msa1139240 | 0.840440 | 8.683763e-58 | -8.615850e-47 |
| Msa0839230 | Msa1205540 | -0.800496 | 1.402690e-48 | -8.615850e-47 |
| Msa0839230 | Msa1209560 | 0.854205 | 1.436876e-61 | -8.615850e-47 |
| Msa0839230 | Msa1246040 | 0.841303 | 5.157556e-58 | -8.615850e-47 |
| Msa0839230 | Msa1258950 | 0.800413 | 1.458469e-48 | -8.615850e-47 |
| Msa0839230 | Msa1279860 | 0.814143 | 1.789960e-51 | -8.615850e-47 |
| Msa0839230 | Msa1279870 | 0.825145 | 5.499176e-54 | -8.615850e-47 |
| Msa0839230 | Msa1298910 | 0.833368 | 5.550410e-56 | -8.615850e-47 |
| Msa0839230 | Msa1330530 | 0.834697 | 2.580263e-56 | -8.615850e-47 |
| Msa0839230 | Msa1377070 | 0.817674 | 2.917283e-52 | -8.615850e-47 |
| Msa0839230 | Msa1441200 | 0.800119 | 1.673460e-48 | -8.615850e-47 |
| Msa0839230 | Msa1445250 | 0.849983 | 2.278159e-60 | -8.615850e-47 |
| Msa0839230 | Msa1457020 | 0.800701 | 1.273995e-48 | -8.615850e-47 |
| Msa0143920 | Msa0839230 | 0.817308 | 3.528180e-52 | -8.615850e-47 |
| Msa0146910 | Msa0839230 | -0.807491 | 4.925349e-50 | -8.615850e-47 |
| Msa0179860 | Msa0839230 | 0.806604 | 7.587587e-50 | -8.615850e-47 |
| Msa0201330 | Msa0839230 | 0.825589 | 4.316008e-54 | -8.615850e-47 |
| Msa0201370 | Msa0839230 | 0.802077 | 6.658021e-49 | -8.615850e-47 |
| Msa0438050 | Msa0839230 | 0.820290 | 7.416111e-53 | -8.615850e-47 |
| Msa0440040 | Msa0839230 | 0.818581 | 1.819395e-52 | -8.615850e-47 |
| Msa0457370 | Msa0839230 | 0.824090 | 9.742154e-54 | -8.615850e-47 |
| Msa0465680 | Msa0839230 | -0.801623 | 8.251090e-49 | -8.615850e-47 |
| Msa0467740 | Msa0839230 | -0.808267 | 3.368544e-50 | -8.615850e-47 |
| Msa0243910 | Msa0839230 | 0.802322 | 5.928155e-49 | -8.615850e-47 |
| Msa0243930 | Msa0839230 | 0.841704 | 4.042179e-58 | -8.615850e-47 |
| Msa0282590 | Msa0839230 | 0.847517 | 1.100323e-59 | -8.615850e-47 |
| Msa0299200 | Msa0839230 | 0.800159 | 1.642539e-48 | -8.615850e-47 |
| Msa0492880 | Msa0839230 | 0.803450 | 3.466335e-49 | -8.615850e-47 |
| Msa0501470 | Msa0839230 | 0.815980 | 6.999832e-52 | -8.615850e-47 |
| Msa0514130 | Msa0839230 | -0.807948 | 3.938210e-50 | -8.615850e-47 |
| Msa0528970 | Msa0839230 | 0.802672 | 5.020402e-49 | -8.615850e-47 |
| Msa0562650 | Msa0839230 | 0.811245 | 7.710650e-51 | -8.615850e-47 |
| Msa0563140 | Msa0839230 | 0.831833 | 1.334197e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839230 | MtrunA17_Chr5g0407171 | 94.421 | 484 | 15 | 1 | 1 | 472 | 468 | 951 | 0.0 | 931 |
| Msa0839230 | MtrunA17_Chr8g0370261 | 72.985 | 459 | 110 | 2 | 1 | 447 | 469 | 925 | 0.0 | 688 |
| Msa0839230 | MtrunA17_Chr3g0144141 | 60.407 | 442 | 156 | 4 | 1 | 430 | 507 | 941 | 0.0 | 550 |
| Msa0839230 | MtrunA17_Chr8g0370281 | 57.432 | 444 | 176 | 2 | 1 | 432 | 378 | 820 | 7.80e-174 | 509 |
| Msa0839230 | MtrunA17_Chr2g0322691 | 54.324 | 451 | 183 | 5 | 1 | 428 | 469 | 919 | 4.94e-166 | 492 |
| Msa0839230 | MtrunA17_Chr2g0322681 | 46.437 | 435 | 215 | 5 | 1 | 418 | 465 | 898 | 9.70e-139 | 421 |
| Msa0839230 | MtrunA17_Chr3g0136611 | 41.032 | 407 | 214 | 10 | 2 | 384 | 472 | 876 | 7.90e-89 | 291 |
| Msa0839230 | MtrunA17_Chr3g0136621 | 39.609 | 409 | 219 | 9 | 2 | 384 | 475 | 881 | 1.66e-85 | 282 |
| Msa0839230 | MtrunA17_Chr4g0046101 | 36.609 | 407 | 227 | 8 | 5 | 393 | 459 | 852 | 1.20e-73 | 249 |
| Msa0839230 | MtrunA17_Chr2g0283241 | 33.915 | 401 | 234 | 10 | 5 | 388 | 433 | 819 | 5.25e-69 | 236 |
| Msa0839230 | MtrunA17_Chr2g0283261 | 33.898 | 413 | 236 | 13 | 5 | 395 | 436 | 833 | 3.77e-67 | 231 |
| Msa0839230 | MtrunA17_Chr2g0283231 | 33.054 | 478 | 275 | 13 | 5 | 462 | 460 | 912 | 4.29e-67 | 231 |
| Msa0839230 | MtrunA17_Chr7g0230091 | 33.415 | 410 | 231 | 12 | 1 | 383 | 186 | 580 | 6.27e-56 | 196 |
| Msa0839230 | MtrunA17_Chr2g0283211 | 37.050 | 278 | 162 | 4 | 26 | 301 | 249 | 515 | 1.08e-52 | 186 |
| Msa0839230 | MtrunA17_Chr5g0424541 | 32.274 | 409 | 232 | 12 | 3 | 383 | 460 | 851 | 3.59e-52 | 189 |
| Msa0839230 | MtrunA17_Chr7g0230081 | 30.189 | 424 | 238 | 11 | 3 | 383 | 450 | 858 | 6.49e-51 | 186 |
| Msa0839230 | MtrunA17_Chr2g0283251 | 36.027 | 297 | 174 | 8 | 5 | 297 | 440 | 724 | 8.19e-49 | 179 |
| Msa0839230 | MtrunA17_Chr5g0424521 | 34.503 | 342 | 187 | 10 | 3 | 324 | 366 | 690 | 1.32e-48 | 177 |
| Msa0839230 | MtrunA17_Chr6g0467751 | 31.250 | 400 | 241 | 11 | 5 | 372 | 46 | 443 | 4.60e-46 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0839230 | AT1G42540.1 | 60.426 | 470 | 162 | 5 | 1 | 452 | 462 | 925 | 0.0 | 571 |
| Msa0839230 | AT1G42540.4 | 60.426 | 470 | 162 | 5 | 1 | 452 | 462 | 925 | 0.0 | 571 |
| Msa0839230 | AT1G42540.2 | 60.426 | 470 | 162 | 5 | 1 | 452 | 462 | 925 | 0.0 | 571 |
| Msa0839230 | AT3G51480.4 | 59.955 | 447 | 165 | 3 | 1 | 434 | 454 | 899 | 0.0 | 560 |
| Msa0839230 | AT3G51480.1 | 59.955 | 447 | 165 | 3 | 1 | 434 | 454 | 899 | 0.0 | 560 |
| Msa0839230 | AT3G51480.2 | 59.955 | 447 | 165 | 3 | 1 | 434 | 364 | 809 | 0.0 | 559 |
| Msa0839230 | AT4G35290.4 | 55.111 | 450 | 182 | 4 | 1 | 434 | 464 | 909 | 1.79e-172 | 508 |
| Msa0839230 | AT4G35290.3 | 55.111 | 450 | 182 | 4 | 1 | 434 | 464 | 909 | 1.79e-172 | 508 |
| Msa0839230 | AT4G35290.1 | 55.111 | 450 | 182 | 4 | 1 | 434 | 464 | 909 | 1.79e-172 | 508 |
| Msa0839230 | AT4G35290.2 | 55.111 | 450 | 182 | 4 | 1 | 434 | 464 | 909 | 1.79e-172 | 508 |
| Msa0839230 | AT4G35290.5 | 55.111 | 450 | 182 | 4 | 1 | 434 | 464 | 909 | 1.79e-172 | 508 |
| Msa0839230 | AT2G17260.1 | 57.432 | 444 | 165 | 8 | 1 | 425 | 466 | 904 | 4.81e-168 | 497 |
| Msa0839230 | AT1G05200.6 | 53.968 | 441 | 180 | 5 | 1 | 418 | 490 | 930 | 1.46e-154 | 464 |
| Msa0839230 | AT1G05200.2 | 53.968 | 441 | 180 | 5 | 1 | 418 | 490 | 930 | 1.46e-154 | 464 |
| Msa0839230 | AT1G05200.1 | 53.968 | 441 | 180 | 5 | 1 | 418 | 490 | 930 | 1.46e-154 | 464 |
| Msa0839230 | AT2G32390.2 | 51.020 | 441 | 193 | 6 | 1 | 418 | 381 | 821 | 1.04e-139 | 422 |
| Msa0839230 | AT2G32390.1 | 51.020 | 441 | 193 | 6 | 1 | 418 | 425 | 865 | 2.76e-139 | 422 |
| Msa0839230 | AT2G32390.5 | 51.020 | 441 | 193 | 6 | 1 | 418 | 483 | 923 | 2.09e-138 | 422 |
| Msa0839230 | AT3G51480.3 | 64.667 | 300 | 105 | 1 | 1 | 300 | 454 | 752 | 1.06e-137 | 415 |
| Msa0839230 | AT4G35290.6 | 62.667 | 300 | 108 | 1 | 1 | 300 | 464 | 759 | 3.80e-128 | 390 |
| Msa0839230 | AT2G32400.1 | 45.351 | 441 | 218 | 7 | 5 | 423 | 459 | 898 | 7.57e-127 | 390 |
| Msa0839230 | AT1G05200.7 | 61.386 | 303 | 115 | 2 | 1 | 301 | 490 | 792 | 7.21e-122 | 375 |
| Msa0839230 | AT1G05200.3 | 61.386 | 303 | 115 | 2 | 1 | 301 | 490 | 792 | 7.21e-122 | 375 |
| Msa0839230 | AT5G11180.2 | 38.824 | 425 | 233 | 11 | 1 | 402 | 458 | 878 | 3.43e-83 | 276 |
| Msa0839230 | AT2G29120.1 | 35.729 | 473 | 265 | 13 | 1 | 454 | 458 | 910 | 4.64e-82 | 273 |
| Msa0839230 | AT2G29110.2 | 38.532 | 436 | 230 | 11 | 1 | 414 | 452 | 871 | 6.49e-81 | 270 |
| Msa0839230 | AT2G29110.1 | 38.532 | 436 | 230 | 11 | 1 | 414 | 451 | 870 | 6.68e-81 | 270 |
| Msa0839230 | AT5G27100.1 | 36.000 | 425 | 235 | 11 | 1 | 394 | 450 | 868 | 8.76e-81 | 268 |
| Msa0839230 | AT1G42540.3 | 67.760 | 183 | 55 | 2 | 1 | 179 | 462 | 644 | 4.38e-80 | 261 |
| Msa0839230 | AT5G11210.9 | 35.177 | 452 | 261 | 9 | 1 | 426 | 372 | 817 | 1.06e-79 | 265 |
| Msa0839230 | AT5G11210.1 | 35.177 | 452 | 261 | 9 | 1 | 426 | 396 | 841 | 1.92e-79 | 264 |
| Msa0839230 | AT5G11210.5 | 35.177 | 452 | 261 | 9 | 1 | 426 | 454 | 899 | 3.51e-79 | 265 |
| Msa0839230 | AT2G29100.2 | 36.878 | 442 | 246 | 12 | 2 | 421 | 444 | 874 | 5.86e-76 | 256 |
| Msa0839230 | AT2G29100.1 | 36.878 | 442 | 246 | 12 | 2 | 421 | 442 | 872 | 6.14e-76 | 256 |
| Msa0839230 | AT2G24720.1 | 40.227 | 353 | 190 | 6 | 1 | 333 | 450 | 801 | 1.07e-75 | 255 |
| Msa0839230 | AT4G31710.1 | 39.665 | 358 | 183 | 7 | 1 | 338 | 449 | 793 | 1.59e-75 | 254 |
| Msa0839230 | AT4G31710.2 | 38.827 | 358 | 179 | 7 | 1 | 338 | 472 | 809 | 8.07e-73 | 247 |
| Msa0839230 | AT2G32390.6 | 60.000 | 185 | 74 | 0 | 1 | 185 | 483 | 667 | 8.82e-72 | 240 |
| Msa0839230 | AT5G11210.8 | 41.558 | 308 | 163 | 6 | 1 | 296 | 372 | 674 | 2.56e-70 | 237 |
| Msa0839230 | AT5G11210.3 | 41.558 | 308 | 163 | 6 | 1 | 296 | 380 | 682 | 2.92e-70 | 237 |
| Msa0839230 | AT5G11210.7 | 41.558 | 308 | 163 | 6 | 1 | 296 | 372 | 674 | 2.95e-70 | 237 |
| Msa0839230 | AT5G11210.6 | 41.558 | 308 | 163 | 6 | 1 | 296 | 372 | 674 | 2.95e-70 | 237 |
| Msa0839230 | AT5G11210.2 | 41.558 | 308 | 163 | 6 | 1 | 296 | 454 | 756 | 6.73e-70 | 238 |
| Msa0839230 | AT5G11210.4 | 41.558 | 308 | 163 | 6 | 1 | 296 | 454 | 756 | 6.73e-70 | 238 |
| Msa0839230 | AT5G11210.10 | 41.558 | 308 | 163 | 6 | 1 | 296 | 454 | 756 | 7.65e-70 | 237 |
| Msa0839230 | AT1G05200.4 | 60.221 | 181 | 72 | 0 | 1 | 181 | 490 | 670 | 3.05e-68 | 231 |
| Msa0839230 | AT2G24710.1 | 33.875 | 431 | 253 | 9 | 1 | 403 | 450 | 876 | 1.75e-67 | 232 |
| Msa0839230 | AT2G24710.3 | 33.875 | 431 | 253 | 9 | 1 | 403 | 474 | 900 | 1.92e-67 | 232 |
| Msa0839230 | AT2G32390.4 | 57.143 | 182 | 78 | 0 | 1 | 182 | 483 | 664 | 1.33e-66 | 226 |
| Msa0839230 | AT2G32390.3 | 57.143 | 182 | 78 | 0 | 1 | 182 | 483 | 664 | 1.33e-66 | 226 |
| Msa0839230 | AT5G11210.11 | 36.391 | 338 | 190 | 6 | 55 | 372 | 6 | 338 | 7.54e-66 | 218 |
| Msa0839230 | AT2G24710.2 | 38.944 | 303 | 177 | 4 | 1 | 296 | 474 | 775 | 5.47e-62 | 216 |
| Msa0839230 | AT1G05200.5 | 59.281 | 167 | 68 | 0 | 1 | 167 | 490 | 656 | 2.66e-60 | 209 |
| Msa0839230 | AT2G32390.7 | 55.689 | 167 | 74 | 0 | 1 | 167 | 483 | 649 | 3.84e-58 | 203 |
| Msa0839230 | AT3G07520.1 | 30.900 | 411 | 236 | 10 | 5 | 385 | 448 | 840 | 9.44e-52 | 188 |
| Msa0839230 | AT5G11180.1 | 32.547 | 424 | 200 | 13 | 1 | 402 | 458 | 817 | 1.91e-49 | 181 |
| Msa0839230 | AT5G48400.2 | 31.880 | 367 | 213 | 8 | 29 | 380 | 471 | 815 | 2.84e-49 | 181 |
| Msa0839230 | AT5G48410.1 | 30.179 | 391 | 232 | 8 | 29 | 406 | 468 | 830 | 1.02e-47 | 176 |
| Msa0839230 | AT5G48400.1 | 36.330 | 267 | 148 | 6 | 29 | 293 | 471 | 717 | 2.44e-46 | 172 |
| Msa0839230 | AT5G48410.2 | 35.472 | 265 | 153 | 5 | 29 | 293 | 468 | 714 | 1.10e-45 | 170 |
| Msa0839230 | AT3G04110.1 | 28.878 | 419 | 234 | 12 | 3 | 391 | 421 | 805 | 9.03e-45 | 167 |
| Msa0839230 | AT3G04110.3 | 37.727 | 220 | 123 | 5 | 3 | 216 | 421 | 632 | 1.05e-40 | 155 |
| Msa0839230 | AT5G48410.4 | 27.366 | 391 | 216 | 9 | 29 | 406 | 468 | 803 | 1.91e-34 | 137 |
| Msa0839230 | AT3G04110.2 | 25.776 | 419 | 219 | 12 | 3 | 391 | 421 | 777 | 5.59e-32 | 130 |
| Msa0839230 | AT5G48410.3 | 26.854 | 391 | 214 | 9 | 29 | 406 | 468 | 799 | 1.23e-31 | 129 |
Find 93 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGCTTTCAATGCCTTTAA+TGG | 0.174089 | 5_4:-14065954 | None:intergenic |
| CTGAGCATCATAATCTTTAT+TGG | 0.204930 | 5_4:-14066862 | None:intergenic |
| AACTATTTAATCCAAGAAAT+TGG | 0.226487 | 5_4:+14066025 | Msa0839230:CDS |
| AACCACATCCTTGGTGTAAA+TGG | 0.226841 | 5_4:-14065137 | None:intergenic |
| TGGAACTGTTGTTTGGATTT+TGG | 0.227168 | 5_4:+14065187 | Msa0839230:CDS |
| ACTCATCAATACCAATTTCT+TGG | 0.229387 | 5_4:-14066036 | None:intergenic |
| TTGTCAAAGTGGTGTAATTA+TGG | 0.235490 | 5_4:+14066937 | Msa0839230:exon |
| GGCATTGAAAGCTTAGTAAT+TGG | 0.241024 | 5_4:+14065962 | Msa0839230:CDS |
| CCATATGGAATAAACTTATA+AGG | 0.245835 | 5_4:-14064829 | None:intergenic |
| TGTTGCATGAAAGTGTTAAT+TGG | 0.279976 | 5_4:-14067114 | None:intergenic |
| CCTTATAAGTTTATTCCATA+TGG | 0.280340 | 5_4:+14064829 | Msa0839230:CDS |
| CCGATCAAAGAGAAAGAAAA+TGG | 0.305618 | 5_4:+14066791 | Msa0839230:CDS |
| AAGCTTTCAATGCCTTTAAT+GGG | 0.306277 | 5_4:-14065953 | None:intergenic |
| ACTTGTTCACTTCCATCATT+AGG | 0.336868 | 5_4:-14066912 | None:intergenic |
| ATTGTCTACCATTTGCAAAA+TGG | 0.336897 | 5_4:-14066478 | None:intergenic |
| TATTAGTTGGAACTGTTGTT+TGG | 0.339603 | 5_4:+14065180 | Msa0839230:CDS |
| CTAGTTTCTGTCTCCCTAAC+AGG | 0.342346 | 5_4:-14065095 | None:intergenic |
| TAGTGGTAGTAGCACCTGTT+AGG | 0.348845 | 5_4:+14065081 | Msa0839230:CDS |
| ACTAAACCAGACTCAATATA+TGG | 0.349812 | 5_4:-14065062 | None:intergenic |
| GTCGTTGTGTGCTACTTATA+TGG | 0.356677 | 5_4:+14065852 | Msa0839230:CDS |
| ATGATCCTGAGCTAGGGTTT+TGG | 0.360519 | 5_4:-14066713 | None:intergenic |
| AGTGCTCTAGCAGCTTCTTC+AGG | 0.368684 | 5_4:-14066082 | None:intergenic |
| TGGTGTAAATGGAGCCAAAA+AGG | 0.374511 | 5_4:-14065126 | None:intergenic |
| GAAAATACAGTGAGCACATT+TGG | 0.377522 | 5_4:+14065830 | Msa0839230:CDS |
| CTTGAGAAGGGTCCTCAAAA+TGG | 0.382532 | 5_4:+14066103 | Msa0839230:CDS |
| CTTATAAGTTTATTCCATAT+GGG | 0.389021 | 5_4:+14064830 | Msa0839230:CDS |
| ACTCAGCCATATATTGAGTC+TGG | 0.404527 | 5_4:+14065056 | Msa0839230:CDS |
| ATAATCTTTATTGGAGATGA+TGG | 0.413687 | 5_4:-14066853 | None:intergenic |
| TTTAGGAAATACAAATTGCC+TGG | 0.418662 | 5_4:+14067009 | Msa0839230:three_prime_UTR |
| CGGACAAGCTCGGTGTTACT+AGG | 0.423128 | 5_4:-14064868 | None:intergenic |
| CATATGGAATAAACTTATAA+GGG | 0.429868 | 5_4:-14064828 | None:intergenic |
| TTTGCAAAATGGCAGTTGAT+AGG | 0.431842 | 5_4:-14066467 | None:intergenic |
| TGGCGGTAACTAACGCCTAT+TGG | 0.432370 | 5_4:-14064715 | None:intergenic |
| GATCTGTGGATCAGCATGTT+TGG | 0.435879 | 5_4:+14066614 | Msa0839230:CDS |
| AACTTATAAGGGACAGCATA+AGG | 0.436939 | 5_4:-14064817 | None:intergenic |
| CTGGTACTTGCGAGACAAAT+TGG | 0.437291 | 5_4:-14064735 | None:intergenic |
| ATATATTGAGTCTGGTTTAG+TGG | 0.447740 | 5_4:+14065064 | Msa0839230:CDS |
| TGCAAAGGATTCATGACAAA+TGG | 0.448961 | 5_4:+14066508 | Msa0839230:CDS |
| CAATTTGTCTCGCAAGTACC+AGG | 0.453271 | 5_4:+14064736 | Msa0839230:CDS |
| AAGGGACAGCATAAGGCAAT+AGG | 0.454426 | 5_4:-14064810 | None:intergenic |
| GGAGACAGAAACTAGTGCTT+TGG | 0.456942 | 5_4:+14065103 | Msa0839230:CDS |
| TTGTTCTTACCATCCCCATA+TGG | 0.461876 | 5_4:-14064844 | None:intergenic |
| GAACCTTGAGTGTAACCAAT+TGG | 0.470774 | 5_4:-14065992 | None:intergenic |
| TTGACATCTTCCTTGCAAAC+CGG | 0.471040 | 5_4:+14066161 | Msa0839230:CDS |
| GTAATTGGCAAAGAGCCAAT+TGG | 0.472111 | 5_4:+14065977 | Msa0839230:CDS |
| GGTGATTCTGTTCCTAATGA+TGG | 0.474782 | 5_4:+14066900 | Msa0839230:CDS |
| CCAGGCACAGATACATTTCA+AGG | 0.476169 | 5_4:+14064754 | Msa0839230:CDS |
| CTTGTCCGTCTGATAACAAC+TGG | 0.476371 | 5_4:+14064883 | Msa0839230:CDS |
| AAACGTGATGATCCTGAGCT+AGG | 0.478719 | 5_4:-14066720 | None:intergenic |
| ATTGCTAACGGTGAGTCTCT+TGG | 0.481463 | 5_4:-14066441 | None:intergenic |
| TGCAAGGAAGATGTCAATAT+AGG | 0.490970 | 5_4:-14066155 | None:intergenic |
| TTAAGAATCGGAGTACCAAT+AGG | 0.498180 | 5_4:+14064700 | Msa0839230:CDS |
| CTCCATTTACACCAAGGATG+TGG | 0.498261 | 5_4:+14065135 | Msa0839230:CDS |
| AGCTGCTAGAGCACTTGAGA+AGG | 0.498564 | 5_4:+14066090 | Msa0839230:CDS |
| ATCTCTTATAGAGGTAGTGA+GGG | 0.507274 | 5_4:+14066819 | Msa0839230:CDS |
| AGTGGTAGTAGCACCTGTTA+GGG | 0.511309 | 5_4:+14065082 | Msa0839230:CDS |
| CCTTGAAATGTATCTGTGCC+TGG | 0.511367 | 5_4:-14064754 | None:intergenic |
| CTCTACTAATATACTTCATA+CGG | 0.511636 | 5_4:+14066640 | Msa0839230:CDS |
| AACGTGATGATCCTGAGCTA+GGG | 0.531390 | 5_4:-14066719 | None:intergenic |
| TATTATATATGCTATTTGCA+TGG | 0.532849 | 5_4:-14067059 | None:intergenic |
| GAATCACCTATGCGTGGAGA+TGG | 0.541611 | 5_4:-14066885 | None:intergenic |
| CCTGACCAAAACCCTAGCTC+AGG | 0.544007 | 5_4:+14066708 | Msa0839230:CDS |
| TGAACAAGTATTTGTCAAAG+TGG | 0.544044 | 5_4:+14066926 | Msa0839230:CDS |
| TAAATTTACACCGGTTTGCA+AGG | 0.544070 | 5_4:-14066171 | None:intergenic |
| AAGTTTATTCCATATGGGGA+TGG | 0.544461 | 5_4:+14064835 | Msa0839230:CDS |
| CAGGAATTTGACGGTGCAGT+AGG | 0.544564 | 5_4:+14064990 | Msa0839230:intron |
| ATGGAGAGAATCTCTTATAG+AGG | 0.548030 | 5_4:+14066810 | Msa0839230:CDS |
| GAGCCAATTGGTTACACTCA+AGG | 0.554363 | 5_4:+14065989 | Msa0839230:CDS |
| GCTGCTAGAGCACTTGAGAA+GGG | 0.555149 | 5_4:+14066091 | Msa0839230:CDS |
| TGGGGACTGTATGTGATCTG+TGG | 0.555651 | 5_4:+14066600 | Msa0839230:CDS |
| AATCTCTTATAGAGGTAGTG+AGG | 0.556154 | 5_4:+14066818 | Msa0839230:CDS |
| TTATAAGTTTATTCCATATG+GGG | 0.559101 | 5_4:+14064831 | Msa0839230:CDS |
| AGCTTTCAATGCCTTTAATG+GGG | 0.571429 | 5_4:-14065952 | None:intergenic |
| GCTGTGACAAACCACATCCT+TGG | 0.572660 | 5_4:-14065146 | None:intergenic |
| AAATTGGTATTGATGAGTCT+AGG | 0.579574 | 5_4:+14066041 | Msa0839230:CDS |
| TAGACAATGGGGACTTGCAA+AGG | 0.588875 | 5_4:+14066493 | Msa0839230:CDS |
| AGTAGAGCTTGTTTAACACA+AGG | 0.608489 | 5_4:+14066537 | Msa0839230:CDS |
| AGGGTGAATGATGAATTTAG+AGG | 0.611358 | 5_4:+14065215 | Msa0839230:CDS |
| TGTTATCAGACGGACAAGCT+CGG | 0.614402 | 5_4:-14064878 | None:intergenic |
| GCTCAGCCATCTCCACGCAT+AGG | 0.615235 | 5_4:+14066879 | Msa0839230:CDS |
| CTACAATAGTAAATTTACAC+CGG | 0.615770 | 5_4:-14066180 | None:intergenic |
| ATCTTTATTGGAGATGATGG+AGG | 0.618940 | 5_4:-14066850 | None:intergenic |
| TCACACCAGTTGTTATCAGA+CGG | 0.627621 | 5_4:-14064888 | None:intergenic |
| GCTTTCAATGCCTTTAATGG+GGG | 0.630168 | 5_4:-14065951 | None:intergenic |
| TCTTATAGAGGTAGTGAGGG+AGG | 0.636380 | 5_4:+14066822 | Msa0839230:CDS |
| GTACTTGCGAGACAAATTGG+CGG | 0.642717 | 5_4:-14064732 | None:intergenic |
| GTTGATAGGTCAATTGCTAA+CGG | 0.645755 | 5_4:-14066453 | None:intergenic |
| GGAACAGAATCACCTATGCG+TGG | 0.659697 | 5_4:-14066891 | None:intergenic |
| TTTGCAAATGGTAGACAATG+GGG | 0.667655 | 5_4:+14066482 | Msa0839230:CDS |
| GTACATCAAGCACCGCTCAG+AGG | 0.669416 | 5_4:+14066674 | Msa0839230:CDS |
| GAGAAGGGTCCTCAAAATGG+CGG | 0.676519 | 5_4:+14066106 | Msa0839230:CDS |
| AAGAAAGCTGTTGTACTGTG+AGG | 0.686762 | 5_4:-14065928 | None:intergenic |
| GAGAATCAAGTTCCTCTGAG+CGG | 0.762406 | 5_4:-14066686 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAAAAGGTTCAATAT+TGG | - | chr5_4:14065314-14065333 | None:intergenic | 15.0% |
| !! | TTAAAACTAAAAATCATGTT+TGG | - | chr5_4:14065506-14065525 | None:intergenic | 15.0% |
| !!! | GGTTTTGAATAAATTTATTT+TGG | - | chr5_4:14065600-14065619 | None:intergenic | 15.0% |
| !!! | TCACATTAATTCTTTTAAAT+TGG | - | chr5_4:14066285-14066304 | None:intergenic | 15.0% |
| !!! | TGGAATTTTATTAATTTCAT+GGG | + | chr5_4:14066333-14066352 | Msa0839230:intron | 15.0% |
| !!! | TAAATGTACAAGTTTTATTT+AGG | + | chr5_4:14066992-14067011 | Msa0839230:three_prime_UTR | 15.0% |
| !! | CATATGGAATAAACTTATAA+GGG | - | chr5_4:14064831-14064850 | None:intergenic | 20.0% |
| !! | CTTATAAGTTTATTCCATAT+GGG | + | chr5_4:14064830-14064849 | Msa0839230:CDS | 20.0% |
| !! | TTATAAGTTTATTCCATATG+GGG | + | chr5_4:14064831-14064850 | Msa0839230:CDS | 20.0% |
| !!! | ATCATGTCAATAATCTTTTA+TGG | + | chr5_4:14064913-14064932 | Msa0839230:intron | 20.0% |
| !! | CTGTATGAAAATTCAAAAAT+CGG | - | chr5_4:14064973-14064992 | None:intergenic | 20.0% |
| !!! | ATAGTAACCATTTGTTTTTT+AGG | - | chr5_4:14065245-14065264 | None:intergenic | 20.0% |
| !!! | AACAAATGGTTACTATTTTT+TGG | + | chr5_4:14065249-14065268 | Msa0839230:CDS | 20.0% |
| !!! | ATTGGTTTGGTTTAAAAAAA+AGG | - | chr5_4:14065325-14065344 | None:intergenic | 20.0% |
| !!! | AAATGGATTTTAACATGTTT+AGG | + | chr5_4:14065421-14065440 | Msa0839230:intron | 20.0% |
| !! | AATGAAACTTGATTAATCAA+AGG | - | chr5_4:14065792-14065811 | None:intergenic | 20.0% |
| !! | AACTATTTAATCCAAGAAAT+TGG | + | chr5_4:14066025-14066044 | Msa0839230:CDS | 20.0% |
| !! | ACAATTTCTTGCAATAAAAT+TGG | + | chr5_4:14066259-14066278 | Msa0839230:intron | 20.0% |
| !!! | CTGGAATTTTATTAATTTCA+TGG | + | chr5_4:14066332-14066351 | Msa0839230:intron | 20.0% |
| !!! | CTTAAATTTATTTTCTTTCC+AGG | - | chr5_4:14067030-14067049 | None:intergenic | 20.0% |
| !!! | TATTATATATGCTATTTGCA+TGG | - | chr5_4:14067062-14067081 | None:intergenic | 20.0% |
| ! | CCATATGGAATAAACTTATA+AGG | - | chr5_4:14064832-14064851 | None:intergenic | 25.0% |
| ! | CCTTATAAGTTTATTCCATA+TGG | + | chr5_4:14064829-14064848 | Msa0839230:CDS | 25.0% |
| !! | CAATAATCTTTTATGGAGTT+TGG | + | chr5_4:14064920-14064939 | Msa0839230:intron | 25.0% |
| !! | CGATTTTTGAATTTTCATAC+AGG | + | chr5_4:14064971-14064990 | Msa0839230:intron | 25.0% |
| !! | ATTTTCATACAGGAATTTGA+CGG | + | chr5_4:14064981-14065000 | Msa0839230:intron | 25.0% |
| ! | TACTACAACAAGAACAAAAA+TGG | + | chr5_4:14065025-14065044 | Msa0839230:CDS | 25.0% |
| ! | TAACTTGAAGTTGAGATTAA+AGG | + | chr5_4:14065471-14065490 | Msa0839230:intron | 25.0% |
| ! | TTCATTTATCCATACTATGT+AGG | + | chr5_4:14065806-14065825 | Msa0839230:intron | 25.0% |
| ! | TCATTTATCCATACTATGTA+GGG | + | chr5_4:14065807-14065826 | Msa0839230:intron | 25.0% |
| ! | CTACAATAGTAAATTTACAC+CGG | - | chr5_4:14066183-14066202 | None:intergenic | 25.0% |
| !! | TACATTTCAATTTTAGACTC+TGG | - | chr5_4:14066384-14066403 | None:intergenic | 25.0% |
| !! | ACTCAAACTAAAAAGCTTTT+GGG | + | chr5_4:14066581-14066600 | Msa0839230:CDS | 25.0% |
| ! | CTCTACTAATATACTTCATA+CGG | + | chr5_4:14066640-14066659 | Msa0839230:CDS | 25.0% |
| ! | ATAATCTTTATTGGAGATGA+TGG | - | chr5_4:14066856-14066875 | None:intergenic | 25.0% |
| AATGGAAGGCTATTAAGAAT+CGG | + | chr5_4:14064688-14064707 | Msa0839230:CDS | 30.0% | |
| !! | GGAGTTTGGATGTTTTATTA+TGG | + | chr5_4:14064934-14064953 | Msa0839230:intron | 30.0% |
| TACAACAAGAACAAAAATGG+TGG | + | chr5_4:14065028-14065047 | Msa0839230:CDS | 30.0% | |
| ACTAAACCAGACTCAATATA+TGG | - | chr5_4:14065065-14065084 | None:intergenic | 30.0% | |
| ! | ATATATTGAGTCTGGTTTAG+TGG | + | chr5_4:14065064-14065083 | Msa0839230:CDS | 30.0% |
| !! | GCTCTCTTTTTCATATTAGT+TGG | + | chr5_4:14065167-14065186 | Msa0839230:CDS | 30.0% |
| TATTAGTTGGAACTGTTGTT+TGG | + | chr5_4:14065180-14065199 | Msa0839230:CDS | 30.0% | |
| !!! | GTAACCATTTGTTTTTTAGG+TGG | - | chr5_4:14065242-14065261 | None:intergenic | 30.0% |
| !! | ATGCATTATTAGCATTGGTT+TGG | - | chr5_4:14065338-14065357 | None:intergenic | 30.0% |
| ATTGCATGCATTATTAGCAT+TGG | - | chr5_4:14065343-14065362 | None:intergenic | 30.0% | |
| TAATGCATGCAATATTCATG+TGG | + | chr5_4:14065350-14065369 | Msa0839230:intron | 30.0% | |
| ! | TCAAAACCAATTTTCGCTTA+TGG | + | chr5_4:14065612-14065631 | Msa0839230:intron | 30.0% |
| ATTCTACCATAAGCGAAAAT+TGG | - | chr5_4:14065621-14065640 | None:intergenic | 30.0% | |
| TTGTTTGTGTTGTATTTGAC+AGG | + | chr5_4:14065683-14065702 | Msa0839230:intron | 30.0% | |
| TATGTCATAGAAGACAGAAT+CGG | - | chr5_4:14065747-14065766 | None:intergenic | 30.0% | |
| TCTGTCTTCTATGACATATA+TGG | + | chr5_4:14065749-14065768 | Msa0839230:intron | 30.0% | |
| CATTTATCCATACTATGTAG+GGG | + | chr5_4:14065808-14065827 | Msa0839230:intron | 30.0% | |
| AAGCTTTCAATGCCTTTAAT+GGG | - | chr5_4:14065956-14065975 | None:intergenic | 30.0% | |
| TAAGCTTTCAATGCCTTTAA+TGG | - | chr5_4:14065957-14065976 | None:intergenic | 30.0% | |
| ACTCATCAATACCAATTTCT+TGG | - | chr5_4:14066039-14066058 | None:intergenic | 30.0% | |
| !! | AAATTGGTATTGATGAGTCT+AGG | + | chr5_4:14066041-14066060 | Msa0839230:CDS | 30.0% |
| CGGTGTAAATTTACTATTGT+AGG | + | chr5_4:14066181-14066200 | Msa0839230:intron | 30.0% | |
| ATAAAATTCCAGAATCATGC+TGG | - | chr5_4:14066324-14066343 | None:intergenic | 30.0% | |
| ATTGTCTACCATTTGCAAAA+TGG | - | chr5_4:14066481-14066500 | None:intergenic | 30.0% | |
| ! | ATTTTGCAAATGGTAGACAA+TGG | + | chr5_4:14066480-14066499 | Msa0839230:CDS | 30.0% |
| ! | TTTTGCAAATGGTAGACAAT+GGG | + | chr5_4:14066481-14066500 | Msa0839230:CDS | 30.0% |
| ! | GACTCAAACTAAAAAGCTTT+TGG | + | chr5_4:14066580-14066599 | Msa0839230:CDS | 30.0% |
| ! | CTCAAACTAAAAAGCTTTTG+GGG | + | chr5_4:14066582-14066601 | Msa0839230:CDS | 30.0% |
| !! | CTCTTCTTTTTCATCTACAA+AGG | - | chr5_4:14066760-14066779 | None:intergenic | 30.0% |
| ! | CCATTTTCTTTCTCTTTGAT+CGG | - | chr5_4:14066794-14066813 | None:intergenic | 30.0% |
| CTGAGCATCATAATCTTTAT+TGG | - | chr5_4:14066865-14066884 | None:intergenic | 30.0% | |
| TGAACAAGTATTTGTCAAAG+TGG | + | chr5_4:14066926-14066945 | Msa0839230:CDS | 30.0% | |
| TTGTCAAAGTGGTGTAATTA+TGG | + | chr5_4:14066937-14066956 | Msa0839230:exon | 30.0% | |
| TTTAGGAAATACAAATTGCC+TGG | + | chr5_4:14067009-14067028 | Msa0839230:three_prime_UTR | 30.0% | |
| ! | TTAAGAATCGGAGTACCAAT+AGG | + | chr5_4:14064700-14064719 | Msa0839230:CDS | 35.0% |
| AACTTATAAGGGACAGCATA+AGG | - | chr5_4:14064820-14064839 | None:intergenic | 35.0% | |
| AAGTTTATTCCATATGGGGA+TGG | + | chr5_4:14064835-14064854 | Msa0839230:CDS | 35.0% | |
| !! | TGGAACTGTTGTTTGGATTT+TGG | + | chr5_4:14065187-14065206 | Msa0839230:CDS | 35.0% |
| !!! | TTGTTTGGATTTTGGAGCAT+AGG | + | chr5_4:14065195-14065214 | Msa0839230:CDS | 35.0% |
| !!! | TGTTTGGATTTTGGAGCATA+GGG | + | chr5_4:14065196-14065215 | Msa0839230:CDS | 35.0% |
| AGGGTGAATGATGAATTTAG+AGG | + | chr5_4:14065215-14065234 | Msa0839230:CDS | 35.0% | |
| AGGACCACCTAAAAAACAAA+TGG | + | chr5_4:14065235-14065254 | Msa0839230:CDS | 35.0% | |
| ! | GTATTTTCCCCTACATAGTA+TGG | - | chr5_4:14065818-14065837 | None:intergenic | 35.0% |
| GAAAATACAGTGAGCACATT+TGG | + | chr5_4:14065830-14065849 | Msa0839230:CDS | 35.0% | |
| AGCTTTCAATGCCTTTAATG+GGG | - | chr5_4:14065955-14065974 | None:intergenic | 35.0% | |
| ! | GGCATTGAAAGCTTAGTAAT+TGG | + | chr5_4:14065962-14065981 | Msa0839230:CDS | 35.0% |
| TGCAAGGAAGATGTCAATAT+AGG | - | chr5_4:14066158-14066177 | None:intergenic | 35.0% | |
| !! | TAAATTTACACCGGTTTGCA+AGG | - | chr5_4:14066174-14066193 | None:intergenic | 35.0% |
| ! | TTTTAGTACCAGCATGATTC+TGG | + | chr5_4:14066313-14066332 | Msa0839230:intron | 35.0% |
| TTGTAGGACTTAAGGGAATT+TGG | - | chr5_4:14066359-14066378 | None:intergenic | 35.0% | |
| ! | ATTTTAGACTCTGGCATTGT+AGG | - | chr5_4:14066375-14066394 | None:intergenic | 35.0% |
| ! | GTTGATAGGTCAATTGCTAA+CGG | - | chr5_4:14066456-14066475 | None:intergenic | 35.0% |
| TTTGCAAAATGGCAGTTGAT+AGG | - | chr5_4:14066470-14066489 | None:intergenic | 35.0% | |
| !!! | ATCAACTGCCATTTTGCAAA+TGG | + | chr5_4:14066470-14066489 | Msa0839230:CDS | 35.0% |
| TTTGCAAATGGTAGACAATG+GGG | + | chr5_4:14066482-14066501 | Msa0839230:CDS | 35.0% | |
| TGCAAAGGATTCATGACAAA+TGG | + | chr5_4:14066508-14066527 | Msa0839230:CDS | 35.0% | |
| ! | AGTAGAGCTTGTTTAACACA+AGG | + | chr5_4:14066537-14066556 | Msa0839230:CDS | 35.0% |
| CCGATCAAAGAGAAAGAAAA+TGG | + | chr5_4:14066791-14066810 | Msa0839230:CDS | 35.0% | |
| ATGGAGAGAATCTCTTATAG+AGG | + | chr5_4:14066810-14066829 | Msa0839230:CDS | 35.0% | |
| AATCTCTTATAGAGGTAGTG+AGG | + | chr5_4:14066818-14066837 | Msa0839230:CDS | 35.0% | |
| ATCTCTTATAGAGGTAGTGA+GGG | + | chr5_4:14066819-14066838 | Msa0839230:CDS | 35.0% | |
| ! | ATCTTTATTGGAGATGATGG+AGG | - | chr5_4:14066853-14066872 | None:intergenic | 35.0% |
| ACTTGTTCACTTCCATCATT+AGG | - | chr5_4:14066915-14066934 | None:intergenic | 35.0% | |
| TTGTTCTTACCATCCCCATA+TGG | - | chr5_4:14064847-14064866 | None:intergenic | 40.0% | |
| TCACACCAGTTGTTATCAGA+CGG | - | chr5_4:14064891-14064910 | None:intergenic | 40.0% | |
| ACTCAGCCATATATTGAGTC+TGG | + | chr5_4:14065056-14065075 | Msa0839230:CDS | 40.0% | |
| !! | AACTAGTGCTTTGGCCTTTT+TGG | + | chr5_4:14065112-14065131 | Msa0839230:CDS | 40.0% |
| TGGTGTAAATGGAGCCAAAA+AGG | - | chr5_4:14065129-14065148 | None:intergenic | 40.0% | |
| !!! | TTTTGGCTCCATTTACACCA+AGG | + | chr5_4:14065129-14065148 | Msa0839230:CDS | 40.0% |
| ! | AACCACATCCTTGGTGTAAA+TGG | - | chr5_4:14065140-14065159 | None:intergenic | 40.0% |
| TGCATGCAATATTCATGTGG+AGG | + | chr5_4:14065353-14065372 | Msa0839230:intron | 40.0% | |
| TGCAATTCTGTGAGAGGAAA+AGG | + | chr5_4:14065377-14065396 | Msa0839230:intron | 40.0% | |
| !! | GTCGTTGTGTGCTACTTATA+TGG | + | chr5_4:14065852-14065871 | Msa0839230:CDS | 40.0% |
| AAGAAAGCTGTTGTACTGTG+AGG | - | chr5_4:14065931-14065950 | None:intergenic | 40.0% | |
| GCTTTCAATGCCTTTAATGG+GGG | - | chr5_4:14065954-14065973 | None:intergenic | 40.0% | |
| GTAATTGGCAAAGAGCCAAT+TGG | + | chr5_4:14065977-14065996 | Msa0839230:CDS | 40.0% | |
| GAACCTTGAGTGTAACCAAT+TGG | - | chr5_4:14065995-14066014 | None:intergenic | 40.0% | |
| TTGACATCTTCCTTGCAAAC+CGG | + | chr5_4:14066161-14066180 | Msa0839230:CDS | 40.0% | |
| TCTGGCATTGTAGGACTTAA+GGG | - | chr5_4:14066366-14066385 | None:intergenic | 40.0% | |
| ! | TGTTCTTAACTGTGCTGTTC+AGG | + | chr5_4:14066413-14066432 | Msa0839230:intron | 40.0% |
| ! | GTTCTTAACTGTGCTGTTCA+GGG | + | chr5_4:14066414-14066433 | Msa0839230:intron | 40.0% |
| GGTGATTCTGTTCCTAATGA+TGG | + | chr5_4:14066900-14066919 | Msa0839230:CDS | 40.0% | |
| GTACTTGCGAGACAAATTGG+CGG | - | chr5_4:14064735-14064754 | None:intergenic | 45.0% | |
| CTGGTACTTGCGAGACAAAT+TGG | - | chr5_4:14064738-14064757 | None:intergenic | 45.0% | |
| CAATTTGTCTCGCAAGTACC+AGG | + | chr5_4:14064736-14064755 | Msa0839230:CDS | 45.0% | |
| CCTTGAAATGTATCTGTGCC+TGG | - | chr5_4:14064757-14064776 | None:intergenic | 45.0% | |
| CCAGGCACAGATACATTTCA+AGG | + | chr5_4:14064754-14064773 | Msa0839230:CDS | 45.0% | |
| AAGGGACAGCATAAGGCAAT+AGG | - | chr5_4:14064813-14064832 | None:intergenic | 45.0% | |
| TGTTATCAGACGGACAAGCT+CGG | - | chr5_4:14064881-14064900 | None:intergenic | 45.0% | |
| CTTGTCCGTCTGATAACAAC+TGG | + | chr5_4:14064883-14064902 | Msa0839230:CDS | 45.0% | |
| TAGTGGTAGTAGCACCTGTT+AGG | + | chr5_4:14065081-14065100 | Msa0839230:CDS | 45.0% | |
| AGTGGTAGTAGCACCTGTTA+GGG | + | chr5_4:14065082-14065101 | Msa0839230:CDS | 45.0% | |
| CTAGTTTCTGTCTCCCTAAC+AGG | - | chr5_4:14065098-14065117 | None:intergenic | 45.0% | |
| GGAGACAGAAACTAGTGCTT+TGG | + | chr5_4:14065103-14065122 | Msa0839230:CDS | 45.0% | |
| CTCCATTTACACCAAGGATG+TGG | + | chr5_4:14065135-14065154 | Msa0839230:CDS | 45.0% | |
| GGTTCAATATTGGTGAGCCA+GGG | - | chr5_4:14065304-14065323 | None:intergenic | 45.0% | |
| AGGTTCAATATTGGTGAGCC+AGG | - | chr5_4:14065305-14065324 | None:intergenic | 45.0% | |
| CAGCTTTCTTCCCCCATTAA+AGG | + | chr5_4:14065941-14065960 | Msa0839230:CDS | 45.0% | |
| GAGCCAATTGGTTACACTCA+AGG | + | chr5_4:14065989-14066008 | Msa0839230:CDS | 45.0% | |
| CTTGAGAAGGGTCCTCAAAA+TGG | + | chr5_4:14066103-14066122 | Msa0839230:CDS | 45.0% | |
| GGTCAAGAGTTCACCAGAAA+CGG | + | chr5_4:14066202-14066221 | Msa0839230:intron | 45.0% | |
| CTCTGGCATTGTAGGACTTA+AGG | - | chr5_4:14066367-14066386 | None:intergenic | 45.0% | |
| ATTGCTAACGGTGAGTCTCT+TGG | - | chr5_4:14066444-14066463 | None:intergenic | 45.0% | |
| TAGACAATGGGGACTTGCAA+AGG | + | chr5_4:14066493-14066512 | Msa0839230:CDS | 45.0% | |
| GATCTGTGGATCAGCATGTT+TGG | + | chr5_4:14066614-14066633 | Msa0839230:CDS | 45.0% | |
| GAGAATCAAGTTCCTCTGAG+CGG | - | chr5_4:14066689-14066708 | None:intergenic | 45.0% | |
| ! | ATGATCCTGAGCTAGGGTTT+TGG | - | chr5_4:14066716-14066735 | None:intergenic | 45.0% |
| AACGTGATGATCCTGAGCTA+GGG | - | chr5_4:14066722-14066741 | None:intergenic | 45.0% | |
| AAACGTGATGATCCTGAGCT+AGG | - | chr5_4:14066723-14066742 | None:intergenic | 45.0% | |
| TCTTATAGAGGTAGTGAGGG+AGG | + | chr5_4:14066822-14066841 | Msa0839230:CDS | 45.0% | |
| !!! | TTTATTTTAGAAATATAAAA+TGG | + | chr5_4:14065404-14065423 | Msa0839230:intron | 5.0% |
| TGGCGGTAACTAACGCCTAT+TGG | - | chr5_4:14064718-14064737 | None:intergenic | 50.0% | |
| CAGGAATTTGACGGTGCAGT+AGG | + | chr5_4:14064990-14065009 | Msa0839230:intron | 50.0% | |
| GCTGTGACAAACCACATCCT+TGG | - | chr5_4:14065149-14065168 | None:intergenic | 50.0% | |
| ! | TCTATCTCCCCTCTTTTCCC+TGG | + | chr5_4:14065284-14065303 | Msa0839230:intron | 50.0% |
| TTGGTGAGCCAGGGAAAAGA+GGG | - | chr5_4:14065295-14065314 | None:intergenic | 50.0% | |
| ATTGGTGAGCCAGGGAAAAG+AGG | - | chr5_4:14065296-14065315 | None:intergenic | 50.0% | |
| GGAGGTTGCAATTCTGTGAG+AGG | + | chr5_4:14065371-14065390 | Msa0839230:intron | 50.0% | |
| AGTGCTCTAGCAGCTTCTTC+AGG | - | chr5_4:14066085-14066104 | None:intergenic | 50.0% | |
| ! | AGCTGCTAGAGCACTTGAGA+AGG | + | chr5_4:14066090-14066109 | Msa0839230:CDS | 50.0% |
| ! | GCTGCTAGAGCACTTGAGAA+GGG | + | chr5_4:14066091-14066110 | Msa0839230:CDS | 50.0% |
| GAGAAGGGTCCTCAAAATGG+CGG | + | chr5_4:14066106-14066125 | Msa0839230:CDS | 50.0% | |
| AAGAGTTCACCAGAAACGGC+TGG | + | chr5_4:14066206-14066225 | Msa0839230:intron | 50.0% | |
| AGAGTTCACCAGAAACGGCT+GGG | + | chr5_4:14066207-14066226 | Msa0839230:intron | 50.0% | |
| TACAAATCCCCAGCCGTTTC+TGG | - | chr5_4:14066218-14066237 | None:intergenic | 50.0% | |
| TGGGGACTGTATGTGATCTG+TGG | + | chr5_4:14066600-14066619 | Msa0839230:CDS | 50.0% | |
| GAATCACCTATGCGTGGAGA+TGG | - | chr5_4:14066888-14066907 | None:intergenic | 50.0% | |
| GGAACAGAATCACCTATGCG+TGG | - | chr5_4:14066894-14066913 | None:intergenic | 50.0% | |
| !! | CGGACAAGCTCGGTGTTACT+AGG | - | chr5_4:14064871-14064890 | None:intergenic | 55.0% |
| TGGTGAGCCAGGGAAAAGAG+GGG | - | chr5_4:14065294-14065313 | None:intergenic | 55.0% | |
| GAGTTCACCAGAAACGGCTG+GGG | + | chr5_4:14066208-14066227 | Msa0839230:intron | 55.0% | |
| ! | GTACATCAAGCACCGCTCAG+AGG | + | chr5_4:14066674-14066693 | Msa0839230:CDS | 55.0% |
| !! | CCTGAGCTAGGGTTTTGGTC+AGG | - | chr5_4:14066711-14066730 | None:intergenic | 55.0% |
| CCTGACCAAAACCCTAGCTC+AGG | + | chr5_4:14066708-14066727 | Msa0839230:CDS | 55.0% | |
| !! | GCAGCAACGCCGCCATTTTG+AGG | - | chr5_4:14066118-14066137 | None:intergenic | 60.0% |
| GCTCAGCCATCTCCACGCAT+AGG | + | chr5_4:14066879-14066898 | Msa0839230:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 14064688 | 14067134 | 14064688 | ID=Msa0839230;Name=Msa0839230 |
| chr5_4 | mRNA | 14064688 | 14067134 | 14064688 | ID=Msa0839230-mRNA-1;Parent=Msa0839230;Name=Msa0839230-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.75|0.6|1|1|1|5|181|472 |
| chr5_4 | exon | 14064688 | 14064906 | 14064688 | ID=Msa0839230-mRNA-1:exon:6162;Parent=Msa0839230-mRNA-1 |
| chr5_4 | exon | 14064993 | 14065270 | 14064993 | ID=Msa0839230-mRNA-1:exon:6163;Parent=Msa0839230-mRNA-1 |
| chr5_4 | exon | 14065705 | 14065736 | 14065705 | ID=Msa0839230-mRNA-1:exon:6164;Parent=Msa0839230-mRNA-1 |
| chr5_4 | exon | 14065828 | 14066198 | 14065828 | ID=Msa0839230-mRNA-1:exon:6165;Parent=Msa0839230-mRNA-1 |
| chr5_4 | exon | 14066435 | 14067134 | 14066435 | ID=Msa0839230-mRNA-1:exon:6166;Parent=Msa0839230-mRNA-1 |
| chr5_4 | CDS | 14064688 | 14064906 | 14064688 | ID=Msa0839230-mRNA-1:cds;Parent=Msa0839230-mRNA-1 |
| chr5_4 | CDS | 14064993 | 14065270 | 14064993 | ID=Msa0839230-mRNA-1:cds;Parent=Msa0839230-mRNA-1 |
| chr5_4 | CDS | 14065705 | 14065736 | 14065705 | ID=Msa0839230-mRNA-1:cds;Parent=Msa0839230-mRNA-1 |
| chr5_4 | CDS | 14065828 | 14066198 | 14065828 | ID=Msa0839230-mRNA-1:cds;Parent=Msa0839230-mRNA-1 |
| chr5_4 | CDS | 14066435 | 14066953 | 14066435 | ID=Msa0839230-mRNA-1:cds;Parent=Msa0839230-mRNA-1 |
| chr5_4 | three_prime_UTR | 14066954 | 14067134 | 14066954 | ID=Msa0839230-mRNA-1:three_prime_utr;Parent=Msa0839230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
