AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0048730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0048730 MtrunA17_Chr1g0165671 92.213 244 10 1 1 235 19 262 4.52e-163 461
Msa0048730 MtrunA17_Chr1g0165681 79.012 243 42 1 1 234 1 243 2.34e-141 405
Msa0048730 MtrunA17_Chr1g0165711 80.658 243 38 1 1 234 1 243 4.79e-139 398
Msa0048730 MtrunA17_Chr1g0165661 75.720 243 50 1 1 234 1 243 2.25e-135 390
Msa0048730 MtrunA17_Chr5g0433641 59.504 242 85 3 5 234 6 246 1.19e-98 296
Msa0048730 MtrunA17_Chr7g0273721 58.921 241 88 2 5 234 7 247 2.05e-98 296
Msa0048730 MtrunA17_Chr1g0191081 56.420 257 98 4 4 247 13 268 2.67e-96 290
Msa0048730 MtrunA17_Chr7g0273781 56.349 252 92 4 2 239 36 283 3.80e-96 291
Msa0048730 MtrunA17_Chr7g0273791 57.317 246 93 3 5 239 6 250 1.98e-94 286
Msa0048730 MtrunA17_Chr7g0273731 55.285 246 98 3 5 239 89 333 1.70e-91 280
Msa0048730 MtrunA17_Chr7g0273761 53.226 248 92 4 5 234 378 619 1.85e-85 272
Msa0048730 MtrunA17_Chr7g0273761 50.467 107 39 2 137 235 32 132 1.79e-26 108
Msa0048730 MtrunA17_Chr8g0353421 84.496 129 11 1 1 120 1 129 8.26e-73 219
Msa0048730 MtrunA17_Chr1g0165741 72.789 147 31 1 1 138 1 147 4.41e-72 218
Msa0048730 MtrunA17_Chr6g0471371 71.333 150 34 1 1 141 1 150 5.96e-72 218
Msa0048730 MtrunA17_Chr7g0273741 55.944 143 54 1 5 138 6 148 2.30e-53 170
Msa0048730 MtrunA17_Chr3g0098961 52.055 146 61 1 2 138 6 151 5.69e-46 152
Msa0048730 MtrunA17_Chr1g0165731 73.494 83 22 0 152 234 1 83 9.07e-42 139
Msa0048730 MtrunA17_Chr7g0224391 34.348 230 135 5 12 230 19 243 7.01e-37 135
Msa0048730 MtrunA17_Chr8g0386141 31.301 246 149 6 1 233 1 239 8.31e-37 135
Msa0048730 MtrunA17_Chr3g0132001 30.802 237 147 5 9 233 14 245 1.15e-33 127
Msa0048730 MtrunA17_Chr4g0027071 31.325 249 155 4 3 238 6 251 5.56e-33 125
Msa0048730 MtrunA17_Chr2g0306321 34.906 212 117 8 17 208 26 236 7.05e-28 111
Msa0048730 MtrunA17_Chr7g0270771 29.018 224 130 6 5 208 1 215 1.09e-27 107
Msa0048730 MtrunA17_Chr3g0141851 30.085 236 139 5 17 233 20 248 7.99e-26 105
Msa0048730 MtrunA17_Chr2g0334001 32.683 205 124 5 17 212 11 210 4.45e-24 100
Msa0048730 MtrunA17_Chr8g0371821 32.367 207 126 5 15 212 9 210 2.86e-23 98.2
Msa0048730 MtrunA17_Chr7g0273691 54.878 82 33 2 156 234 1 81 3.01e-23 91.3
Msa0048730 MtrunA17_Chr4g0001861 33.010 206 122 6 17 212 11 210 5.20e-23 97.4
Msa0048730 MtrunA17_Chr6g0471971 48.810 84 38 2 152 234 1 80 6.26e-21 88.6
Msa0048730 MtrunA17_Chr7g0252731 28.405 257 159 9 1 246 11 253 4.46e-20 89.4
Msa0048730 MtrunA17_Chr3g0106711 30.000 190 114 4 16 188 17 204 2.04e-19 84.7
Msa0048730 MtrunA17_Chr3g0113821 30.556 216 131 6 17 216 13 225 8.81e-19 85.5
Msa0048730 MtrunA17_Chr7g0273681 65.306 49 17 0 82 130 1 49 2.73e-18 76.6
Msa0048730 MtrunA17_Chr3g0106661 31.088 193 112 6 16 190 17 206 9.81e-18 82.4
Msa0048730 MtrunA17_Chr3g0106691 30.729 192 109 6 16 188 63 249 9.82e-18 82.8
Msa0048730 MtrunA17_Chr3g0106721 30.000 190 114 4 16 188 17 204 8.37e-17 79.7
Msa0048730 MtrunA17_Chr6g0471981 56.061 66 27 1 91 156 1 64 1.72e-16 72.0
Msa0048730 MtrunA17_Chr6g0470591 30.667 150 88 3 56 191 63 210 1.05e-15 76.6
Msa0048730 MtrunA17_Chr3g0106761 36.220 127 72 3 68 190 28 149 1.23e-15 76.3
Msa0048730 MtrunA17_Chr7g0235531 28.019 207 127 6 17 207 12 212 2.80e-15 75.1
Msa0048730 MtrunA17_Chr7g0253501 28.426 197 125 6 9 193 2 194 3.80e-15 75.1
Msa0048730 MtrunA17_Chr6g0471381 68.085 47 15 0 188 234 6 52 4.15e-15 73.6
Msa0048730 MtrunA17_Chr3g0106741 37.795 127 70 3 68 190 59 180 4.28e-15 74.7
Msa0048730 MtrunA17_Chr2g0283361 30.556 180 112 5 30 198 25 202 1.02e-14 73.6
Msa0048730 MtrunA17_Chr7g0253531 26.540 211 139 6 9 207 2 208 8.21e-14 70.9
Msa0048730 MtrunA17_Chr1g0169471 35.052 97 55 2 78 173 11 100 3.85e-13 64.7
Msa0048730 MtrunA17_Chr7g0273671 72.500 40 11 0 2 41 3 42 8.65e-13 61.6
Msa0048730 MtrunA17_Chr3g0123061 25.000 176 120 5 5 173 1 171 9.60e-12 64.7
Msa0048730 MtrunA17_Chr4g0072041 28.655 171 107 5 17 175 22 189 2.88e-11 63.5
Msa0048730 MtrunA17_Chr4g0054081 27.807 187 120 5 1 175 1 184 3.42e-11 63.2
Msa0048730 MtrunA17_Chr8g0361771 28.641 206 130 9 9 203 3 202 3.67e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0048730 AT5G17540.1 56.275 247 93 5 1 234 1 245 7.32e-90 274
Msa0048730 AT3G03480.1 57.724 246 84 8 4 234 14 254 1.43e-80 250
Msa0048730 AT5G63560.1 31.518 257 153 7 1 241 1 250 4.77e-39 141
Msa0048730 AT3G48720.1 29.008 262 170 6 1 250 1 258 3.44e-38 139
Msa0048730 AT5G41040.1 31.174 247 153 6 4 238 28 269 1.87e-37 137
Msa0048730 AT5G41040.2 31.174 247 153 6 4 238 12 253 2.08e-37 137
Msa0048730 AT1G27620.1 33.498 203 118 4 10 202 10 205 2.25e-27 110
Msa0048730 AT3G62160.1 34.500 200 107 7 5 190 1 190 1.24e-26 107
Msa0048730 AT1G03390.1 34.762 210 113 8 16 205 24 229 1.08e-23 100
Msa0048730 AT5G48930.1 34.579 214 119 8 17 219 11 214 1.98e-23 99.0
Msa0048730 AT5G07080.1 32.547 212 117 6 1 194 6 209 5.32e-20 89.4
Msa0048730 AT1G65450.1 29.694 229 140 8 1 216 12 232 1.65e-19 88.2
Msa0048730 AT5G57840.1 30.137 219 134 7 17 225 11 220 1.77e-19 87.8
Msa0048730 AT3G47170.1 25.651 269 152 9 3 236 6 261 1.26e-17 82.8
Msa0048730 AT2G25150.1 32.110 218 121 8 5 202 9 219 2.89e-17 81.6
Msa0048730 AT1G28680.1 28.293 205 130 8 16 205 11 213 1.82e-16 79.3
Msa0048730 AT1G28680.2 28.293 205 130 8 16 205 11 213 2.23e-16 78.6
Msa0048730 AT2G23510.1 27.962 211 127 6 1 193 5 208 3.42e-16 78.6
Msa0048730 AT2G19070.1 29.474 190 115 6 35 209 29 214 4.45e-16 78.2
Msa0048730 AT2G40230.1 30.275 218 125 9 17 215 13 222 9.50e-15 73.9
Msa0048730 AT1G24420.2 31.792 173 105 5 15 177 11 180 6.73e-13 68.6
Msa0048730 AT1G24420.1 31.792 173 105 5 15 177 11 180 6.73e-13 68.6
Msa0048730 AT1G78990.1 29.444 180 105 5 62 228 65 235 4.25e-12 66.2
Msa0048730 AT4G15390.1 27.461 193 127 7 3 184 2 192 5.38e-12 65.9
Msa0048730 AT4G15390.2 27.461 193 127 7 3 184 2 192 5.38e-12 65.9

Find 117 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCCATTGTTGGTGATTC+AGG 0.100165 1_2:+1175163 Msa0048730:CDS
TTCAAACCAACATTAGTTTA+AGG 0.181902 1_2:-1177954 None:intergenic
TGCGGTGAGGATTTCGAAAT+TGG 0.188633 1_2:-1177342 None:intergenic
GGGTCTTTCCCTGCCATATT+TGG 0.199762 1_2:-1174904 None:intergenic
TTTGATGGTCTTACAAATTC+AGG 0.203685 1_2:-1174787 None:intergenic
GCATTCAGTTGCGGATTTAA+TGG 0.222413 1_2:+1177601 Msa0048730:three_prime_UTR
TTTGAAAACGTAACCCTTCT+TGG 0.271683 1_2:-1174852 None:intergenic
GGTATTTAGCTCAATTAATA+AGG 0.282791 1_2:-1178057 None:intergenic
GTGGGAGAAGAGCGCGAATT+TGG 0.299557 1_2:-1177301 None:intergenic
TAAACGAACTTATGATAATA+AGG 0.304041 1_2:-1178257 None:intergenic
CACCTAAGGCACTCATGAAT+TGG 0.305227 1_2:-1177089 None:intergenic
GCGATGTGCCATGTCATCTA+AGG 0.315875 1_2:-1177250 None:intergenic
TGAATTTCCTTTGCTATGAT+TGG 0.316077 1_2:+1177973 Msa0048730:three_prime_UTR
TAAGGGAATAATTGTTCCTT+TGG 0.330029 1_2:-1177232 None:intergenic
TTGGAGATGTTGACTTTGGT+TGG 0.341202 1_2:+1177693 Msa0048730:three_prime_UTR
GGTTGGGGAAAAGCTGTATA+TGG 0.341822 1_2:+1177710 Msa0048730:three_prime_UTR
CCCGTCGCGGTTACAACCGC+TGG 0.344616 1_2:+1177500 Msa0048730:three_prime_UTR
GATGTTAGTTTGAAAGAATT+TGG 0.347283 1_2:+1175065 Msa0048730:CDS
GAAACAATGAAACTAGGTTT+TGG 0.349312 1_2:-1177920 None:intergenic
TTATAAGTATGATCCAAATA+TGG 0.357454 1_2:+1174891 Msa0048730:CDS
GATGTGACACGTGCTGGATT+TGG 0.363433 1_2:+1177674 Msa0048730:three_prime_UTR
TGCTAAAGGAGAGGAAGGTT+TGG 0.383515 1_2:+1177799 Msa0048730:three_prime_UTR
TGGAGATGTTGACTTTGGTT+GGG 0.387463 1_2:+1177694 Msa0048730:three_prime_UTR
CTGCTGCGTCACACATTGTA+TGG 0.389180 1_2:-1177059 None:intergenic
AACATTAACGAACCTACTAT+TGG 0.395610 1_2:+1177893 Msa0048730:three_prime_UTR
AAATCCTCACCGCATGCCTT+TGG 0.410833 1_2:+1177351 Msa0048730:CDS
ATAATTGTTCCTTTGGTGTC+GGG 0.411133 1_2:-1177225 None:intergenic
CGAACTTCTTCGTCAGTGTC+TGG 0.418327 1_2:-1177398 None:intergenic
AAACTAATGGAAAATCCGTT+AGG 0.419834 1_2:+1177524 Msa0048730:three_prime_UTR
TTGGTGGATCCCTTGCGTTT+AGG 0.429033 1_2:-1177167 None:intergenic
TGCGGATTTAATGGTTATCA+AGG 0.430701 1_2:+1177610 Msa0048730:three_prime_UTR
CCTTAGGTGAAATTTCTTGC+GGG 0.433387 1_2:+1177103 Msa0048730:CDS
GTCCAATTCATGAGTGCCTT+AGG 0.433988 1_2:+1177087 Msa0048730:CDS
TACAACCGCTGGGAAACTAA+TGG 0.437340 1_2:+1177511 Msa0048730:three_prime_UTR
CCAGCGGTTGTAACCGCGAC+GGG 0.438069 1_2:-1177500 None:intergenic
AATGTGTGACGCAGCAGGTT+TGG 0.438562 1_2:+1177065 Msa0048730:CDS
TCACTGTGAATGATAGAGAT+TGG 0.444139 1_2:-1174753 None:intergenic
AGGTCCTGACAGGAAACTTA+TGG 0.445457 1_2:+1174998 Msa0048730:CDS
AGTGCTTAACTCTCCATTGT+TGG 0.450887 1_2:+1175154 Msa0048730:CDS
GCATTACCGTAGTAACCATT+TGG 0.454482 1_2:-1177467 None:intergenic
TACTTATAAAATTGTATCAC+TGG 0.463814 1_2:-1174877 None:intergenic
CACTGTGAATGATAGAGATT+GGG 0.466767 1_2:-1174752 None:intergenic
GCGAATTTGGCTACCTCGGT+TGG 0.480870 1_2:-1177288 None:intergenic
CAATCTCACCGGTATGGCAT+AGG 0.484304 1_2:+1177139 Msa0048730:CDS
TGTAGACCTTAAACTAATGT+TGG 0.490789 1_2:+1177948 Msa0048730:three_prime_UTR
TTTAATCCACCGTTACCAAA+TGG 0.496653 1_2:+1177452 Msa0048730:three_prime_UTR
TTGATGGTCTTACAAATTCA+GGG 0.497631 1_2:-1174786 None:intergenic
GGATTTGGAGATGTTGACTT+TGG 0.497797 1_2:+1177689 Msa0048730:three_prime_UTR
AAGTATGATCCAAATATGGC+AGG 0.501582 1_2:+1174895 Msa0048730:CDS
GTGTCTGATGTGACACGTGC+TGG 0.502256 1_2:+1177668 Msa0048730:three_prime_UTR
AGCTCATCCAAACAAGGAAA+AGG 0.507667 1_2:-1175104 None:intergenic
CGATGAGTGCATGTTACTCT+TGG 0.517477 1_2:-1177186 None:intergenic
AACTTCTCCATGGCTTGAGC+TGG 0.517646 1_2:-1177839 None:intergenic
AATAATTGTTCCTTTGGTGT+CGG 0.522248 1_2:-1177226 None:intergenic
TGCCATACCGGTGAGATTGA+AGG 0.523692 1_2:-1177135 None:intergenic
AACTAATGGAAAATCCGTTA+GGG 0.528322 1_2:+1177525 Msa0048730:three_prime_UTR
GGAGATGTTGACTTTGGTTG+GGG 0.528669 1_2:+1177695 Msa0048730:three_prime_UTR
AACGATAAGACATTATATGA+TGG 0.532826 1_2:-1178167 None:intergenic
GGAGGAGTTGGTGCTATACC+TGG 0.535378 1_2:+1177746 Msa0048730:three_prime_UTR
CACACATTGTATGGTTTAGA+CGG 0.536195 1_2:-1177050 None:intergenic
CATGTATTCTTGAGTTACAT+CGG 0.537828 1_2:-1177579 None:intergenic
GCACCAACTCCTCCTTTAGC+TGG 0.539177 1_2:-1177737 None:intergenic
GTATATGGTGGACCAGCTAA+AGG 0.539427 1_2:+1177725 Msa0048730:three_prime_UTR
GCCTTAGGTGAAATTTCTTG+CGG 0.540414 1_2:+1177102 Msa0048730:CDS
CTCTTTGACGAACTTCTCCA+TGG 0.543009 1_2:-1177849 None:intergenic
AATCTCACCGGTATGGCATA+GGG 0.546127 1_2:+1177140 Msa0048730:CDS
TGAGTGCATGTTACTCTTGG+TGG 0.546616 1_2:-1177183 None:intergenic
CAGACATAGATGACCAAGAA+GGG 0.546800 1_2:+1174839 Msa0048730:CDS
AGGTTAAGGAAGGTCCTGAC+AGG 0.549149 1_2:+1174988 Msa0048730:intron
TCCACCATAAGTTTCCTGTC+AGG 0.550793 1_2:-1175002 None:intergenic
AGGAGCTCCCTATGCCATAC+CGG 0.550924 1_2:-1177147 None:intergenic
TTGTTTACCAGCTCAAGCCA+TGG 0.552757 1_2:+1177832 Msa0048730:three_prime_UTR
GGACCAGCTAAAGGAGGAGT+TGG 0.553044 1_2:+1177734 Msa0048730:three_prime_UTR
ATTAACGAACCTACTATTGG+TGG 0.562257 1_2:+1177896 Msa0048730:three_prime_UTR
AACCTTCAATCTCACCGGTA+TGG 0.568331 1_2:+1177133 Msa0048730:CDS
CCCGCAAGAAATTTCACCTA+AGG 0.570019 1_2:-1177103 None:intergenic
CCGTCGCGGTTACAACCGCT+GGG 0.572108 1_2:+1177501 Msa0048730:three_prime_UTR
AGTATGATCCAAATATGGCA+GGG 0.572294 1_2:+1174896 Msa0048730:CDS
AACTCTAGTGCATACCCTAA+CGG 0.573134 1_2:-1177539 None:intergenic
CCGTTACCAAATGGTTACTA+CGG 0.574521 1_2:+1177461 Msa0048730:three_prime_UTR
AGAATACATGCATTCAGTTG+CGG 0.574989 1_2:+1177592 Msa0048730:three_prime_UTR
CGATGTGCCATGTCATCTAA+GGG 0.577121 1_2:-1177249 None:intergenic
CATACAATGTGTGACGCAGC+AGG 0.579280 1_2:+1177060 Msa0048730:CDS
ATAGGGAGCTCCTAAACGCA+AGG 0.581041 1_2:+1177157 Msa0048730:CDS
CGATTGTACGACAACGCCAA+AGG 0.587072 1_2:-1177367 None:intergenic
AATTATTCCCTTAGATGACA+TGG 0.589108 1_2:+1177242 Msa0048730:CDS
AATACCTGAATCACCAACAA+TGG 0.589517 1_2:-1175167 None:intergenic
ACATTAGTTTAAGGTCTACA+AGG 0.590944 1_2:-1177945 None:intergenic
GAGCGCGAATTTGGCTACCT+CGG 0.599835 1_2:-1177292 None:intergenic
ATTTGCAGGTAGGTTAAGGA+AGG 0.601844 1_2:+1174978 Msa0048730:intron
AAGGAAGAAACAATGAAACT+AGG 0.603955 1_2:-1177926 None:intergenic
GCGGATTTAATGGTTATCAA+GGG 0.606067 1_2:+1177611 Msa0048730:three_prime_UTR
ATCTGCATTGTCAATGCTCG+TGG 0.609350 1_2:+1177425 Msa0048730:exon
CCGTAGTAACCATTTGGTAA+CGG 0.610295 1_2:-1177461 None:intergenic
ATATAAAAGCTAGCAACACC+AGG 0.611199 1_2:-1177764 None:intergenic
TCTCACACCAATCATAGCAA+AGG 0.613641 1_2:-1177980 None:intergenic
GAACGAACCTTCAATCTCAC+CGG 0.615082 1_2:+1177128 Msa0048730:CDS
TCAGACATAGATGACCAAGA+AGG 0.615146 1_2:+1174838 Msa0048730:CDS
CTTCTAACCACAGTAAAATG+TGG 0.618528 1_2:-1177638 None:intergenic
AAAAGTAGCTCATCCAAACA+AGG 0.619216 1_2:-1175110 None:intergenic
TGATGGTCTTACAAATTCAG+GGG 0.623986 1_2:-1174785 None:intergenic
CCCAGCGGTTGTAACCGCGA+CGG 0.625128 1_2:-1177501 None:intergenic
ATGGTGGATTGTAATGATGA+AGG 0.626655 1_2:+1175017 Msa0048730:CDS
GCTTGAGCTGGTAAACAAAG+TGG 0.635861 1_2:-1177827 None:intergenic
TCATCCAAACAAGGAAAAGG+AGG 0.640809 1_2:-1175101 None:intergenic
GAACAAGTTCCCGACACCAA+AGG 0.642952 1_2:+1177216 Msa0048730:CDS
TAGTAACCATTTGGTAACGG+TGG 0.653193 1_2:-1177458 None:intergenic
TAGGTAACACGTCTCAAGTG+TGG 0.654765 1_2:+1177009 Msa0048730:intron
AACGCCAAAGGCATGCGGTG+AGG 0.656317 1_2:-1177355 None:intergenic
TCCTGACAGGAAACTTATGG+TGG 0.657173 1_2:+1175001 Msa0048730:CDS
TAGGGAGCTCCTAAACGCAA+GGG 0.659865 1_2:+1177158 Msa0048730:CDS
TGGGGAAAAGCTGTATATGG+TGG 0.663720 1_2:+1177713 Msa0048730:three_prime_UTR
TATGGTGGACCAGCTAAAGG+AGG 0.665823 1_2:+1177728 Msa0048730:three_prime_UTR
TTAAGCACTTCTGAAGAACC+AGG 0.667440 1_2:-1175140 None:intergenic
GTTGCAAAAGATAATCACGA+TGG 0.685988 1_2:+1178016 Msa0048730:three_prime_UTR
GTAACACGTCTCAAGTGTGG+TGG 0.692143 1_2:+1177012 Msa0048730:CDS
ACGACAACGCCAAAGGCATG+CGG 0.713965 1_2:-1177360 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTCTTTTGAAAAATTAA+CGG - chr1_2:1175368-1175387 None:intergenic 10.0%
!! AAATAGATAACTTTATATTA+TGG + chr1_2:1175383-1175402 Msa0048730:intron 10.0%
!!! CAATTTTTTTTTTGTATAAA+CGG + chr1_2:1175784-1175803 Msa0048730:intron 10.0%
!!! ATTATTTTAGGTTATTATTT+TGG - chr1_2:1176130-1176149 None:intergenic 10.0%
!!! TAACCTAAAATAATTTTTTT+AGG + chr1_2:1176136-1176155 Msa0048730:intron 10.0%
!!! TTTCCTAAAAAAATTATTTT+AGG - chr1_2:1176142-1176161 None:intergenic 10.0%
!! ATAAGTTAATTAGTTAAAAT+TGG - chr1_2:1176941-1176960 None:intergenic 10.0%
!! TATATTTCATAAATTTACAG+TGG + chr1_2:1175235-1175254 Msa0048730:intron 15.0%
!! GCTTATAAAAATAATTACTT+CGG + chr1_2:1175460-1175479 Msa0048730:intron 15.0%
!! ATTGCTCTTTAAATATTATT+CGG - chr1_2:1175854-1175873 None:intergenic 15.0%
!!! ATTTTACATATTTAAATCCT+AGG + chr1_2:1176054-1176073 Msa0048730:intron 15.0%
!! TATTTAATTGCATAAAAAAG+TGG + chr1_2:1176244-1176263 Msa0048730:intron 15.0%
!!! ATTGTTTTTATAACAATTTG+TGG + chr1_2:1176914-1176933 Msa0048730:intron 15.0%
!! TACTTATAAAATTGTATCAC+TGG - chr1_2:1174880-1174899 None:intergenic 20.0%
!! TTATAAGTATGATCCAAATA+TGG + chr1_2:1174891-1174910 Msa0048730:CDS 20.0%
!!! CTTTTCTAATAATATCAACA+GGG - chr1_2:1174927-1174946 None:intergenic 20.0%
!!! TTATTCAACTAGTTAGATTT+TGG + chr1_2:1175607-1175626 Msa0048730:intron 20.0%
!! TTTAGGAAACACAAAATAAT+TGG + chr1_2:1176153-1176172 Msa0048730:intron 20.0%
!! CTTACATGTAAATTTGTAAA+TGG + chr1_2:1176285-1176304 Msa0048730:intron 20.0%
!! AAAAAAATTTAATTCAGCTG+AGG + chr1_2:1176557-1176576 Msa0048730:intron 20.0%
!! TAGACAAAATTTATACATCA+CGG + chr1_2:1176846-1176865 Msa0048730:intron 20.0%
!!! AACTTTAACAACATTTTTCA+CGG - chr1_2:1178082-1178101 None:intergenic 20.0%
!! TAAACGAACTTATGATAATA+AGG - chr1_2:1178260-1178279 None:intergenic 20.0%
!! GAAAGTAATTTTACTTCATG+AGG - chr1_2:1174820-1174839 None:intergenic 25.0%
!! GCTTTTCTAATAATATCAAC+AGG - chr1_2:1174928-1174947 None:intergenic 25.0%
!! GATGTTAGTTTGAAAGAATT+TGG + chr1_2:1175065-1175084 Msa0048730:CDS 25.0%
! ATATAGTACAAGTGTATGTA+CGG - chr1_2:1175292-1175311 None:intergenic 25.0%
! ATATAGTACGAGTATATGTT+GGG - chr1_2:1175338-1175357 None:intergenic 25.0%
! AATATAGTACGAGTATATGT+TGG - chr1_2:1175339-1175358 None:intergenic 25.0%
! CATATACTCGTACTATATTA+AGG + chr1_2:1175340-1175359 Msa0048730:intron 25.0%
! TTCATTCAATATGATGTATG+TGG - chr1_2:1175543-1175562 None:intergenic 25.0%
!! AATTTGCTTATAATAGTGAC+CGG + chr1_2:1175575-1175594 Msa0048730:intron 25.0%
! TTTCTATCGAAAAGAATCTT+AGG + chr1_2:1176101-1176120 Msa0048730:intron 25.0%
!!! GGCACATATATTTTTTTAAG+AGG + chr1_2:1176306-1176325 Msa0048730:intron 25.0%
!! GTTCACAAACAAAATTTTAC+AGG + chr1_2:1176408-1176427 Msa0048730:intron 25.0%
!! CAAGCACAAATAATTGTTTT+TGG + chr1_2:1176431-1176450 Msa0048730:intron 25.0%
!! TTTAAGATCAGATACGTATT+TGG - chr1_2:1176590-1176609 None:intergenic 25.0%
! TTCAAAAAAAGAAAGAAGAG+TGG + chr1_2:1176672-1176691 Msa0048730:intron 25.0%
! TCAAAAAAAGAAAGAAGAGT+GGG + chr1_2:1176673-1176692 Msa0048730:intron 25.0%
!! TTGATTGTAACAACACATTT+TGG - chr1_2:1176704-1176723 None:intergenic 25.0%
! ATACCTTTCAAAAATGCTAA+AGG + chr1_2:1177785-1177804 Msa0048730:three_prime_UTR 25.0%
!! TTCAAACCAACATTAGTTTA+AGG - chr1_2:1177957-1177976 None:intergenic 25.0%
!! GGTATTTAGCTCAATTAATA+AGG - chr1_2:1178060-1178079 None:intergenic 25.0%
!! ACTTTAACAACATTTTTCAC+GGG - chr1_2:1178081-1178100 None:intergenic 25.0%
! AACGATAAGACATTATATGA+TGG - chr1_2:1178170-1178189 None:intergenic 25.0%
! TTGATGGTCTTACAAATTCA+GGG - chr1_2:1174789-1174808 None:intergenic 30.0%
! TTTGATGGTCTTACAAATTC+AGG - chr1_2:1174790-1174809 None:intergenic 30.0%
! AATTTTACTTCATGAGGTGT+TGG - chr1_2:1174814-1174833 None:intergenic 30.0%
!! GTGTTTTATTATCCATTTGC+AGG + chr1_2:1174964-1174983 Msa0048730:intron 30.0%
TTTATTATCCATTTGCAGGT+AGG + chr1_2:1174968-1174987 Msa0048730:intron 30.0%
! CTAGTTAGATTTTGGACTAA+TGG + chr1_2:1175615-1175634 Msa0048730:intron 30.0%
!!! AGAATTTTTCAAGACACATG+TGG - chr1_2:1176008-1176027 None:intergenic 30.0%
AGATTTGTAAATGACACAAG+TGG + chr1_2:1176342-1176361 Msa0048730:intron 30.0%
!! CTTGAATTTTGACCATTTGT+AGG + chr1_2:1176990-1177009 Msa0048730:intron 30.0%
! AATAATTGTTCCTTTGGTGT+CGG - chr1_2:1177229-1177248 None:intergenic 30.0%
TAAGGGAATAATTGTTCCTT+TGG - chr1_2:1177235-1177254 None:intergenic 30.0%
AATTATTCCCTTAGATGACA+TGG + chr1_2:1177242-1177261 Msa0048730:CDS 30.0%
!!! CGAAATTGGATTGTTTTTGT+TGG - chr1_2:1177331-1177350 None:intergenic 30.0%
AAACTAATGGAAAATCCGTT+AGG + chr1_2:1177524-1177543 Msa0048730:three_prime_UTR 30.0%
AACTAATGGAAAATCCGTTA+GGG + chr1_2:1177525-1177544 Msa0048730:three_prime_UTR 30.0%
CATGTATTCTTGAGTTACAT+CGG - chr1_2:1177582-1177601 None:intergenic 30.0%
! TCTCCTTTAGCATTTTTGAA+AGG - chr1_2:1177791-1177810 None:intergenic 30.0%
TTTCAAAAATGCTAAAGGAG+AGG + chr1_2:1177790-1177809 Msa0048730:three_prime_UTR 30.0%
AACATTAACGAACCTACTAT+TGG + chr1_2:1177893-1177912 Msa0048730:three_prime_UTR 30.0%
! GAAACAATGAAACTAGGTTT+TGG - chr1_2:1177923-1177942 None:intergenic 30.0%
AAGGAAGAAACAATGAAACT+AGG - chr1_2:1177929-1177948 None:intergenic 30.0%
! ACATTAGTTTAAGGTCTACA+AGG - chr1_2:1177948-1177967 None:intergenic 30.0%
TGTAGACCTTAAACTAATGT+TGG + chr1_2:1177948-1177967 Msa0048730:three_prime_UTR 30.0%
! TGAATTTCCTTTGCTATGAT+TGG + chr1_2:1177973-1177992 Msa0048730:three_prime_UTR 30.0%
CACTGTGAATGATAGAGATT+GGG - chr1_2:1174755-1174774 None:intergenic 35.0%
TCACTGTGAATGATAGAGAT+TGG - chr1_2:1174756-1174775 None:intergenic 35.0%
! TGATGGTCTTACAAATTCAG+GGG - chr1_2:1174788-1174807 None:intergenic 35.0%
TTTGAAAACGTAACCCTTCT+TGG - chr1_2:1174855-1174874 None:intergenic 35.0%
AAGTATGATCCAAATATGGC+AGG + chr1_2:1174895-1174914 Msa0048730:CDS 35.0%
AGTATGATCCAAATATGGCA+GGG + chr1_2:1174896-1174915 Msa0048730:CDS 35.0%
!! ATGGTGGATTGTAATGATGA+AGG + chr1_2:1175017-1175036 Msa0048730:CDS 35.0%
!!! TGAAGGTGTTTTGTTCATTG+AGG + chr1_2:1175034-1175053 Msa0048730:CDS 35.0%
AAAAGTAGCTCATCCAAACA+AGG - chr1_2:1175113-1175132 None:intergenic 35.0%
AATACCTGAATCACCAACAA+TGG - chr1_2:1175170-1175189 None:intergenic 35.0%
!! GTCACTTTGAAAGACTTTTC+AGG + chr1_2:1175482-1175501 Msa0048730:intron 35.0%
AGTTGAATAATTACTCCCTC+CGG - chr1_2:1175597-1175616 None:intergenic 35.0%
! ATCCTTTTATTCCACCAAAG+CGG - chr1_2:1175755-1175774 None:intergenic 35.0%
CTTTGGTGGAATAAAAGGAT+GGG + chr1_2:1175755-1175774 Msa0048730:intron 35.0%
TCTGTCGCTATACTATTTGT+CGG + chr1_2:1175814-1175833 Msa0048730:intron 35.0%
ATTTGCCACAATTCAAGATG+TGG + chr1_2:1175939-1175958 Msa0048730:intron 35.0%
TCAAGATGTGGCTGAAAAAT+AGG + chr1_2:1175951-1175970 Msa0048730:intron 35.0%
! TGCAAGACACTTTTATTCCT+AGG - chr1_2:1176074-1176093 None:intergenic 35.0%
TTTGTAAATGACACAAGTGG+AGG + chr1_2:1176345-1176364 Msa0048730:intron 35.0%
AAATGATTCAAGTGAGGTCA+AGG - chr1_2:1176505-1176524 None:intergenic 35.0%
CTACACAAATGATTCAAGTG+AGG - chr1_2:1176511-1176530 None:intergenic 35.0%
CTCACTTGAATCATTTGTGT+AGG + chr1_2:1176509-1176528 Msa0048730:intron 35.0%
AAGATCAGATACGTATTTGG+TGG - chr1_2:1176587-1176606 None:intergenic 35.0%
AAAAAAGAAAGAAGAGTGGG+TGG + chr1_2:1176676-1176695 Msa0048730:intron 35.0%
AAAAAGAAAGAAGAGTGGGT+GGG + chr1_2:1176677-1176696 Msa0048730:intron 35.0%
AGACACACACTAGAGTTAAA+AGG - chr1_2:1176743-1176762 None:intergenic 35.0%
CACACATTGTATGGTTTAGA+CGG - chr1_2:1177053-1177072 None:intergenic 35.0%
!! ATAATTGTTCCTTTGGTGTC+GGG - chr1_2:1177228-1177247 None:intergenic 35.0%
!!! ATTGTTTTTGTTGGTGAGGT+GGG - chr1_2:1177322-1177341 None:intergenic 35.0%
!!! TTGGATTGTTTTTGTTGGTG+AGG - chr1_2:1177326-1177345 None:intergenic 35.0%
TTTAATCCACCGTTACCAAA+TGG + chr1_2:1177452-1177471 Msa0048730:three_prime_UTR 35.0%
!! ATTTTCCATTAGTTTCCCAG+CGG - chr1_2:1177519-1177538 None:intergenic 35.0%
AGAATACATGCATTCAGTTG+CGG + chr1_2:1177592-1177611 Msa0048730:three_prime_UTR 35.0%
TGCGGATTTAATGGTTATCA+AGG + chr1_2:1177610-1177629 Msa0048730:three_prime_UTR 35.0%
GCGGATTTAATGGTTATCAA+GGG + chr1_2:1177611-1177630 Msa0048730:three_prime_UTR 35.0%
CTTCTAACCACAGTAAAATG+TGG - chr1_2:1177641-1177660 None:intergenic 35.0%
ATATAAAAGCTAGCAACACC+AGG - chr1_2:1177767-1177786 None:intergenic 35.0%
AAAAATGCTAAAGGAGAGGA+AGG + chr1_2:1177794-1177813 Msa0048730:three_prime_UTR 35.0%
ATTAACGAACCTACTATTGG+TGG + chr1_2:1177896-1177915 Msa0048730:three_prime_UTR 35.0%
GTTGCAAAAGATAATCACGA+TGG + chr1_2:1178016-1178035 Msa0048730:three_prime_UTR 35.0%
!!! TCATGAGGTGTTGGTTTTGA+TGG - chr1_2:1174805-1174824 None:intergenic 40.0%
TCAGACATAGATGACCAAGA+AGG + chr1_2:1174838-1174857 Msa0048730:CDS 40.0%
CAGACATAGATGACCAAGAA+GGG + chr1_2:1174839-1174858 Msa0048730:CDS 40.0%
ATCCATTTGCAGGTAGGTTA+AGG + chr1_2:1174974-1174993 Msa0048730:intron 40.0%
TTCCTTAACCTACCTGCAAA+TGG - chr1_2:1174979-1174998 None:intergenic 40.0%
ATTTGCAGGTAGGTTAAGGA+AGG + chr1_2:1174978-1174997 Msa0048730:intron 40.0%
! TCAACCTCCTTTTCCTTGTT+TGG + chr1_2:1175097-1175116 Msa0048730:CDS 40.0%
TCATCCAAACAAGGAAAAGG+AGG - chr1_2:1175104-1175123 None:intergenic 40.0%
AGCTCATCCAAACAAGGAAA+AGG - chr1_2:1175107-1175126 None:intergenic 40.0%
!!! GAGCTACTTTTTGATGTTCC+TGG + chr1_2:1175122-1175141 Msa0048730:CDS 40.0%
! TTAAGCACTTCTGAAGAACC+AGG - chr1_2:1175143-1175162 None:intergenic 40.0%
AGTGCTTAACTCTCCATTGT+TGG + chr1_2:1175154-1175173 Msa0048730:CDS 40.0%
CAAGTGTATGTACGGATTTG+CGG - chr1_2:1175284-1175303 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr1_2:1175578-1175597 Msa0048730:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr1_2:1175579-1175598 Msa0048730:intron 40.0%
GTTACAACACGTAAGACTTC+GGG - chr1_2:1175717-1175736 None:intergenic 40.0%
CGTTACAACACGTAAGACTT+CGG - chr1_2:1175718-1175737 None:intergenic 40.0%
CGAAGTCTTACGTGTTGTAA+CGG + chr1_2:1175716-1175735 Msa0048730:intron 40.0%
! CTTACGTGTTGTAACGGAAT+TGG + chr1_2:1175722-1175741 Msa0048730:intron 40.0%
ATCCGCTTTGGTGGAATAAA+AGG + chr1_2:1175750-1175769 Msa0048730:intron 40.0%
GCTTTGGTGGAATAAAAGGA+TGG + chr1_2:1175754-1175773 Msa0048730:intron 40.0%
CTGTCGCTATACTATTTGTC+GGG + chr1_2:1175815-1175834 Msa0048730:intron 40.0%
TTCAGCCACATCTTGAATTG+TGG - chr1_2:1175947-1175966 None:intergenic 40.0%
TGTGGCTGAAAAATAGGAAG+TGG + chr1_2:1175957-1175976 Msa0048730:intron 40.0%
TCACGGATCAAGCTATTACA+TGG + chr1_2:1176863-1176882 Msa0048730:intron 40.0%
GGATCAAGCTATTACATGGT+TGG + chr1_2:1176867-1176886 Msa0048730:intron 40.0%
TGAGACGTGTTACCTACAAA+TGG - chr1_2:1177005-1177024 None:intergenic 40.0%
GCCTTAGGTGAAATTTCTTG+CGG + chr1_2:1177102-1177121 Msa0048730:CDS 40.0%
CCTTAGGTGAAATTTCTTGC+GGG + chr1_2:1177103-1177122 Msa0048730:CDS 40.0%
!!! GCACATCGCTCTTTTTTCTT+CGG + chr1_2:1177264-1177283 Msa0048730:CDS 40.0%
!!! GATTGTTTTTGTTGGTGAGG+TGG - chr1_2:1177323-1177342 None:intergenic 40.0%
!! TAGTAACCATTTGGTAACGG+TGG - chr1_2:1177461-1177480 None:intergenic 40.0%
CCGTAGTAACCATTTGGTAA+CGG - chr1_2:1177464-1177483 None:intergenic 40.0%
CCGTTACCAAATGGTTACTA+CGG + chr1_2:1177461-1177480 Msa0048730:three_prime_UTR 40.0%
GCATTACCGTAGTAACCATT+TGG - chr1_2:1177470-1177489 None:intergenic 40.0%
AACTCTAGTGCATACCCTAA+CGG - chr1_2:1177542-1177561 None:intergenic 40.0%
GCATTCAGTTGCGGATTTAA+TGG + chr1_2:1177601-1177620 Msa0048730:three_prime_UTR 40.0%
!! GGATTTGGAGATGTTGACTT+TGG + chr1_2:1177689-1177708 Msa0048730:three_prime_UTR 40.0%
!! TTGGAGATGTTGACTTTGGT+TGG + chr1_2:1177693-1177712 Msa0048730:three_prime_UTR 40.0%
!! TGGAGATGTTGACTTTGGTT+GGG + chr1_2:1177694-1177713 Msa0048730:three_prime_UTR 40.0%
TCTCACACCAATCATAGCAA+AGG - chr1_2:1177983-1178002 None:intergenic 40.0%
AGGTCCTGACAGGAAACTTA+TGG + chr1_2:1174998-1175017 Msa0048730:CDS 45.0%
TCCTGACAGGAAACTTATGG+TGG + chr1_2:1175001-1175020 Msa0048730:CDS 45.0%
TCCACCATAAGTTTCCTGTC+AGG - chr1_2:1175005-1175024 None:intergenic 45.0%
!! CTCTCCATTGTTGGTGATTC+AGG + chr1_2:1175163-1175182 Msa0048730:CDS 45.0%
CGAGTATATGTTGGGATGAG+TGG - chr1_2:1175330-1175349 None:intergenic 45.0%
TGGTGGAATAAAAGGATGGG+TGG + chr1_2:1175758-1175777 Msa0048730:intron 45.0%
TGGAATAAAAGGATGGGTGG+TGG + chr1_2:1175761-1175780 Msa0048730:intron 45.0%
ACAAGTGGAGGATGAAGAGA+TGG + chr1_2:1176357-1176376 Msa0048730:intron 45.0%
AGGTCAAGGTTGTGTCTTTG+AGG - chr1_2:1176491-1176510 None:intergenic 45.0%
TAGGTAACACGTCTCAAGTG+TGG + chr1_2:1177009-1177028 Msa0048730:intron 45.0%
GTCCAATTCATGAGTGCCTT+AGG + chr1_2:1177087-1177106 Msa0048730:CDS 45.0%
! CACCTAAGGCACTCATGAAT+TGG - chr1_2:1177092-1177111 None:intergenic 45.0%
CCCGCAAGAAATTTCACCTA+AGG - chr1_2:1177106-1177125 None:intergenic 45.0%
GAACGAACCTTCAATCTCAC+CGG + chr1_2:1177128-1177147 Msa0048730:CDS 45.0%
AACCTTCAATCTCACCGGTA+TGG + chr1_2:1177133-1177152 Msa0048730:CDS 45.0%
AATCTCACCGGTATGGCATA+GGG + chr1_2:1177140-1177159 Msa0048730:CDS 45.0%
TGAGTGCATGTTACTCTTGG+TGG - chr1_2:1177186-1177205 None:intergenic 45.0%
CGATGAGTGCATGTTACTCT+TGG - chr1_2:1177189-1177208 None:intergenic 45.0%
CGATGTGCCATGTCATCTAA+GGG - chr1_2:1177252-1177271 None:intergenic 45.0%
!!! TTTTTTCTTCGGTCCAACCG+AGG + chr1_2:1177275-1177294 Msa0048730:CDS 45.0%
TGCGGTGAGGATTTCGAAAT+TGG - chr1_2:1177345-1177364 None:intergenic 45.0%
ATCTGCATTGTCAATGCTCG+TGG + chr1_2:1177425-1177444 Msa0048730:exon 45.0%
TACAACCGCTGGGAAACTAA+TGG + chr1_2:1177511-1177530 Msa0048730:three_prime_UTR 45.0%
! GGGTAGACCACATTTTACTG+TGG + chr1_2:1177631-1177650 Msa0048730:three_prime_UTR 45.0%
!! GGAGATGTTGACTTTGGTTG+GGG + chr1_2:1177695-1177714 Msa0048730:three_prime_UTR 45.0%
GGTTGGGGAAAAGCTGTATA+TGG + chr1_2:1177710-1177729 Msa0048730:three_prime_UTR 45.0%
TGGGGAAAAGCTGTATATGG+TGG + chr1_2:1177713-1177732 Msa0048730:three_prime_UTR 45.0%
!! GTATATGGTGGACCAGCTAA+AGG + chr1_2:1177725-1177744 Msa0048730:three_prime_UTR 45.0%
TGCTAAAGGAGAGGAAGGTT+TGG + chr1_2:1177799-1177818 Msa0048730:three_prime_UTR 45.0%
GCTTGAGCTGGTAAACAAAG+TGG - chr1_2:1177830-1177849 None:intergenic 45.0%
TTGTTTACCAGCTCAAGCCA+TGG + chr1_2:1177832-1177851 Msa0048730:three_prime_UTR 45.0%
CTCTTTGACGAACTTCTCCA+TGG - chr1_2:1177852-1177871 None:intergenic 45.0%
!!! GGTTTTGGACCACCAATAGT+AGG - chr1_2:1177908-1177927 None:intergenic 45.0%
!! TTCAAAAAAAAAAAAAAAAA+AGG - chr1_2:1176636-1176655 None:intergenic 5.0%
GGGTCTTTCCCTGCCATATT+TGG - chr1_2:1174907-1174926 None:intergenic 50.0%
AGGTTAAGGAAGGTCCTGAC+AGG + chr1_2:1174988-1175007 Msa0048730:intron 50.0%
GAATTGGTGTGCATCCGCTT+TGG + chr1_2:1175738-1175757 Msa0048730:intron 50.0%
AGTGGAGGATGAAGAGATGG+TGG + chr1_2:1176360-1176379 Msa0048730:intron 50.0%
GTAACACGTCTCAAGTGTGG+TGG + chr1_2:1177012-1177031 Msa0048730:CDS 50.0%
CTGCTGCGTCACACATTGTA+TGG - chr1_2:1177062-1177081 None:intergenic 50.0%
CATACAATGTGTGACGCAGC+AGG + chr1_2:1177060-1177079 Msa0048730:CDS 50.0%
AATGTGTGACGCAGCAGGTT+TGG + chr1_2:1177065-1177084 Msa0048730:CDS 50.0%
TGCCATACCGGTGAGATTGA+AGG - chr1_2:1177138-1177157 None:intergenic 50.0%
CAATCTCACCGGTATGGCAT+AGG + chr1_2:1177139-1177158 Msa0048730:CDS 50.0%
ATAGGGAGCTCCTAAACGCA+AGG + chr1_2:1177157-1177176 Msa0048730:CDS 50.0%
TAGGGAGCTCCTAAACGCAA+GGG + chr1_2:1177158-1177177 Msa0048730:CDS 50.0%
! TTGGTGGATCCCTTGCGTTT+AGG - chr1_2:1177170-1177189 None:intergenic 50.0%
GAACAAGTTCCCGACACCAA+AGG + chr1_2:1177216-1177235 Msa0048730:CDS 50.0%
GCGATGTGCCATGTCATCTA+AGG - chr1_2:1177253-1177272 None:intergenic 50.0%
AAATCCTCACCGCATGCCTT+TGG + chr1_2:1177351-1177370 Msa0048730:CDS 50.0%
CGATTGTACGACAACGCCAA+AGG - chr1_2:1177370-1177389 None:intergenic 50.0%
CGAACTTCTTCGTCAGTGTC+TGG - chr1_2:1177401-1177420 None:intergenic 50.0%
GATGTGACACGTGCTGGATT+TGG + chr1_2:1177674-1177693 Msa0048730:three_prime_UTR 50.0%
!! TATGGTGGACCAGCTAAAGG+AGG + chr1_2:1177728-1177747 Msa0048730:three_prime_UTR 50.0%
AACTTCTCCATGGCTTGAGC+TGG - chr1_2:1177842-1177861 None:intergenic 50.0%
TTGGTGTGCATCCGCTTTGG+TGG + chr1_2:1175741-1175760 Msa0048730:intron 55.0%
AGGAGCTCCCTATGCCATAC+CGG - chr1_2:1177150-1177169 None:intergenic 55.0%
GCGAATTTGGCTACCTCGGT+TGG - chr1_2:1177291-1177310 None:intergenic 55.0%
GAGCGCGAATTTGGCTACCT+CGG - chr1_2:1177295-1177314 None:intergenic 55.0%
! GTGGGAGAAGAGCGCGAATT+TGG - chr1_2:1177304-1177323 None:intergenic 55.0%
! ACGACAACGCCAAAGGCATG+CGG - chr1_2:1177363-1177382 None:intergenic 55.0%
! TGCTTTTGCGTTTCCCGTCG+CGG + chr1_2:1177487-1177506 Msa0048730:three_prime_UTR 55.0%
GTGTCTGATGTGACACGTGC+TGG + chr1_2:1177668-1177687 Msa0048730:three_prime_UTR 55.0%
GGACCAGCTAAAGGAGGAGT+TGG + chr1_2:1177734-1177753 Msa0048730:three_prime_UTR 55.0%
GCACCAACTCCTCCTTTAGC+TGG - chr1_2:1177740-1177759 None:intergenic 55.0%
!! GGAGGAGTTGGTGCTATACC+TGG + chr1_2:1177746-1177765 Msa0048730:three_prime_UTR 55.0%
! AACGCCAAAGGCATGCGGTG+AGG - chr1_2:1177358-1177377 None:intergenic 60.0%
CCAGCGGTTGTAACCGCGAC+GGG - chr1_2:1177503-1177522 None:intergenic 65.0%
CCCAGCGGTTGTAACCGCGA+CGG - chr1_2:1177504-1177523 None:intergenic 65.0%
CCGTCGCGGTTACAACCGCT+GGG + chr1_2:1177501-1177520 Msa0048730:three_prime_UTR 65.0%
CCCGTCGCGGTTACAACCGC+TGG + chr1_2:1177500-1177519 Msa0048730:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 1174748 1178283 1174748 ID=Msa0048730;Name=Msa0048730
chr1_2 mRNA 1174748 1178283 1174748 ID=Msa0048730-mRNA-1;Parent=Msa0048730;Name=Msa0048730-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.5|0.33|1|1|1|3|858|274
chr1_2 exon 1174748 1174963 1174748 ID=Msa0048730-mRNA-1:exon:288;Parent=Msa0048730-mRNA-1
chr1_2 exon 1174990 1175184 1174990 ID=Msa0048730-mRNA-1:exon:289;Parent=Msa0048730-mRNA-1
chr1_2 exon 1177012 1178283 1177012 ID=Msa0048730-mRNA-1:exon:290;Parent=Msa0048730-mRNA-1
chr1_2 CDS 1174748 1174963 1174748 ID=Msa0048730-mRNA-1:cds;Parent=Msa0048730-mRNA-1
chr1_2 CDS 1174990 1175184 1174990 ID=Msa0048730-mRNA-1:cds;Parent=Msa0048730-mRNA-1
chr1_2 CDS 1177012 1177425 1177012 ID=Msa0048730-mRNA-1:cds;Parent=Msa0048730-mRNA-1
chr1_2 three_prime_UTR 1177426 1178283 1177426 ID=Msa0048730-mRNA-1:three_prime_utr;Parent=Msa0048730-mRNA-1
Gene Sequence

>Msa0048730

ATGGCCCAATCTCTATCATTCACAGTGAAGAGAAGTGCCCCTGAATTTGTAAGACCATCAAAACCAACACCTCATGAAGTAAAATTACTTTCAGACATAGATGACCAAGAAGGGTTACGTTTTCAAATTCCAGTGATACAATTTTATAAGTATGATCCAAATATGGCAGGGAAAGACCCTGTTGATATTATTAGAAAAGCATTAGCAAAAACACTTGTTAAGGAAGGTCCTGACAGGAAACTTATGGTGGATTGTAATGATGAAGGTGTTTTGTTCATTGAGGCTGATGCTGATGTTAGTTTGAAAGAATTTGGTGATGCTCTTCAACCTCCTTTTCCTTGTTTGGATGAGCTACTTTTTGATGTTCCTGGTTCTTCAGAAGTGCTTAACTCTCCATTGTTGGTGATTCAGGTAACACGTCTCAAGTGTGGTGGTTTCATTTTTGCTCTCCGTCTAAACCATACAATGTGTGACGCAGCAGGTTTGGTCCAATTCATGAGTGCCTTAGGTGAAATTTCTTGCGGGATGAACGAACCTTCAATCTCACCGGTATGGCATAGGGAGCTCCTAAACGCAAGGGATCCACCAAGAGTAACATGCACTCATCGTGAATACGAACAAGTTCCCGACACCAAAGGAACAATTATTCCCTTAGATGACATGGCACATCGCTCTTTTTTCTTCGGTCCAACCGAGGTAGCCAAATTCGCGCTCTTCTCCCACCTCACCAACAAAAACAATCCAATTTCGAAATCCTCACCGCATGCCTTTGGCGTTGTCGTACAATCGCATTACAACCAGACACTGACGAAGAAGTTCGCATAA
Protein sequence

>Msa0048730

MAQSLSFTVKRSAPEFVRPSKPTPHEVKLLSDIDDQEGLRFQIPVIQFYKYDPNMAGKDPVDIIRKALAKTLVKEGPDRKLMVDCNDEGVLFIEADADVSLKEFGDALQPPFPCLDELLFDVPGSSEVLNSPLLVIQVTRLKCGGFIFALRLNHTMCDAAGLVQFMSALGEISCGMNEPSISPVWHRELLNARDPPRVTCTHREYEQVPDTKGTIIPLDDMAHRSFFFGPTEVAKFALFSHLTNKNNPISKSSPHAFGVVVQSHYNQTLTKKFA*