Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0935570 | sp|Q9LYK6|APRF1_ARATH | 83.793 | 290 | 47 | 0 | 49 | 338 | 26 | 315 | 0.0 | 520 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0660870 | Msa0935570 | -0.805900 | 1.067682e-49 | -8.615850e-47 |
| Msa0799280 | Msa0935570 | -0.802911 | 4.480230e-49 | -8.615850e-47 |
| Msa0440040 | Msa0935570 | -0.800424 | 1.450918e-48 | -8.615850e-47 |
| Msa0492870 | Msa0935570 | -0.802984 | 4.327117e-49 | -8.615850e-47 |
| Msa0884890 | Msa0935570 | -0.808436 | 3.099510e-50 | -8.615850e-47 |
| Msa0912470 | Msa0935570 | -0.813210 | 2.873018e-51 | -8.615850e-47 |
| Msa0935570 | Msa0972470 | 0.863331 | 2.686286e-64 | -8.615850e-47 |
| Msa0935570 | Msa1205540 | 0.817493 | 3.204258e-52 | -8.615850e-47 |
| Msa0935570 | Msa1209560 | -0.803158 | 3.983606e-49 | -8.615850e-47 |
| Msa0935570 | Msa1246040 | -0.805630 | 1.216766e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0935570 | MtrunA17_Chr6g0451371 | 98.722 | 313 | 4 | 0 | 49 | 361 | 28 | 340 | 0.0 | 653 |
| Msa0935570 | MtrunA17_Chr8g0367211 | 50.171 | 293 | 137 | 5 | 49 | 337 | 36 | 323 | 1.61e-101 | 303 |
| Msa0935570 | MtrunA17_Chr1g0185501 | 21.942 | 278 | 205 | 5 | 53 | 327 | 33 | 301 | 7.88e-17 | 80.5 |
| Msa0935570 | MtrunA17_Chr4g0067151 | 21.233 | 292 | 207 | 6 | 50 | 328 | 30 | 311 | 3.12e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0935570 | AT5G14530.1 | 83.793 | 290 | 47 | 0 | 49 | 338 | 26 | 315 | 0.0 | 520 |
| Msa0935570 | AT5G66240.1 | 49.655 | 290 | 141 | 3 | 49 | 337 | 32 | 317 | 6.77e-97 | 291 |
| Msa0935570 | AT5G66240.2 | 49.655 | 290 | 141 | 3 | 49 | 337 | 35 | 320 | 7.29e-97 | 291 |
| Msa0935570 | AT5G66240.3 | 49.310 | 290 | 140 | 4 | 49 | 337 | 32 | 315 | 7.46e-94 | 283 |
| Msa0935570 | AT5G50230.1 | 25.091 | 275 | 184 | 10 | 52 | 318 | 230 | 490 | 3.71e-14 | 73.9 |
| Msa0935570 | AT4G02730.1 | 21.533 | 274 | 194 | 7 | 32 | 296 | 26 | 287 | 7.82e-14 | 72.0 |
| Msa0935570 | AT3G49660.1 | 20.209 | 287 | 212 | 6 | 50 | 328 | 27 | 304 | 4.38e-12 | 66.6 |
Find 107 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCAACTGTTCTCACATTT+TGG | 0.113826 | 6_3:-6148937 | Msa0935570:CDS |
| CACCGTCCCTGCTCAATTTC+AGG | 0.186376 | 6_3:-6151254 | Msa0935570:intron |
| CCATCGTAAGGATGATTTAT+TGG | 0.221583 | 6_3:-6149752 | Msa0935570:CDS |
| ATGCTCTTCAAGGTACAATT+TGG | 0.267475 | 6_3:-6149602 | Msa0935570:CDS |
| TGGGTCGGTTCACTGGGGTT+GGG | 0.270302 | 6_3:+6148844 | None:intergenic |
| TTTGTTGTGCGATTGATTAT+TGG | 0.296210 | 6_3:+6151373 | None:intergenic |
| TGGTAGTGGGCGGTGGGCGG+TGG | 0.306595 | 6_3:+6151275 | None:intergenic |
| GGGACGGTGGTAGTGGGCGG+TGG | 0.317552 | 6_3:+6151268 | None:intergenic |
| GGGTCGGTTCACTGGGGTTG+GGG | 0.328947 | 6_3:+6148845 | None:intergenic |
| GTGTGCCTTCATGCTTGAAA+TGG | 0.333505 | 6_3:-6148988 | Msa0935570:CDS |
| TAAGCGCTGCGGATTTAGTT+TGG | 0.334470 | 6_3:-6149149 | Msa0935570:CDS |
| TTGTTGTGCGATTGATTATT+GGG | 0.337462 | 6_3:+6151374 | None:intergenic |
| TTGGGTCGGTTCACTGGGGT+TGG | 0.342028 | 6_3:+6148843 | None:intergenic |
| TTCAGATTCGGTTCGTTGTT+TGG | 0.346342 | 6_3:+6148911 | None:intergenic |
| GCCACTACATACTTCCCGTC+TGG | 0.359890 | 6_3:+6149088 | None:intergenic |
| TTGACCACAGTGTAAGGTTA+TGG | 0.367297 | 6_3:-6149447 | Msa0935570:CDS |
| ACCATGTTTCTTATGATAAG+TGG | 0.368405 | 6_3:+6149666 | None:intergenic |
| TATTCTTCAGCTTTCAGATT+CGG | 0.379412 | 6_3:+6148899 | None:intergenic |
| GTGGGCGGTGGGCGGTGGAC+GGG | 0.388895 | 6_3:+6151280 | None:intergenic |
| AGCATGAAGGCACACCAATA+TGG | 0.401017 | 6_3:+6148996 | None:intergenic |
| AGTGGGCGGTGGGCGGTGGA+CGG | 0.401857 | 6_3:+6151279 | None:intergenic |
| CGGCAAAGACAAGGCCTTGT+TGG | 0.412654 | 6_3:+6149359 | None:intergenic |
| ATATATGTTCTTGATGCATA+TGG | 0.423567 | 6_3:-6149178 | Msa0935570:CDS |
| CGGTGGTAGTGGGCGGTGGG+CGG | 0.423649 | 6_3:+6151272 | None:intergenic |
| AATCTGAAAGCTGAAGAATA+TGG | 0.427295 | 6_3:-6148896 | Msa0935570:CDS |
| TGTGCCTTCATGCTTGAAAT+GGG | 0.431254 | 6_3:-6148987 | Msa0935570:CDS |
| GCATGTTGGAGCAGCCATAT+TGG | 0.431934 | 6_3:-6149010 | Msa0935570:CDS |
| GATATTAAATTCAGCAATGA+TGG | 0.432124 | 6_3:-6149235 | Msa0935570:CDS |
| TTGAGCAGGGACGGTGGTAG+TGG | 0.434314 | 6_3:+6151261 | None:intergenic |
| TTCGATTGATTTCCATCGTA+AGG | 0.442446 | 6_3:-6149764 | Msa0935570:CDS |
| GTTCTGTCATATGCTCTTCA+AGG | 0.445567 | 6_3:-6149612 | Msa0935570:CDS |
| TAGTGGCAGGCTCAGGAGGC+GGG | 0.458698 | 6_3:-6149072 | Msa0935570:CDS |
| GAAGAGCATATGACAGAACT+TGG | 0.462044 | 6_3:+6149616 | None:intergenic |
| TGACCACAGTGTAAGGTTAT+GGG | 0.462418 | 6_3:-6149446 | Msa0935570:CDS |
| TGTGCGATTGATTATTGGGC+TGG | 0.464839 | 6_3:+6151378 | None:intergenic |
| GTCTTTGCCGTAGCAATGGA+AGG | 0.466359 | 6_3:-6149346 | Msa0935570:CDS |
| TTGGGGCTGAAGTCCTGCTT+CGG | 0.472052 | 6_3:+6148862 | None:intergenic |
| CGCGTACATGTAAGATTCCC+TGG | 0.474657 | 6_3:+6149404 | None:intergenic |
| CCGCTGCCTACGATACTTCA+AGG | 0.476986 | 6_3:-6149536 | Msa0935570:CDS |
| GAAATTACCTGAAATTGAGC+AGG | 0.481956 | 6_3:+6151247 | None:intergenic |
| GAGGCGGGACCATGCACGCT+TGG | 0.482153 | 6_3:-6149057 | Msa0935570:CDS |
| GGACGGTGGTAGTGGGCGGT+GGG | 0.488289 | 6_3:+6151269 | None:intergenic |
| TCTACGTGTAAATGCATGCC+AGG | 0.490219 | 6_3:-6149422 | Msa0935570:CDS |
| GTGCGATTGATTATTGGGCT+GGG | 0.492216 | 6_3:+6151379 | None:intergenic |
| GTTCTGTTGACCACAGTGTA+AGG | 0.493412 | 6_3:-6149453 | Msa0935570:CDS |
| ATCAATGATAGCTTCATGTC+TGG | 0.494202 | 6_3:-6149475 | Msa0935570:CDS |
| GGCGGCACAGACGCCGAAGC+AGG | 0.497543 | 6_3:-6148875 | Msa0935570:CDS |
| GACATGAAGCTATCATTGAT+AGG | 0.501421 | 6_3:+6149478 | None:intergenic |
| ATCTCATGGTACCTCAATAG+AGG | 0.509631 | 6_3:-6149122 | Msa0935570:CDS |
| GACAAGGCCTTGTTGGTCAT+AGG | 0.519019 | 6_3:+6149366 | None:intergenic |
| CCACTACATACTTCCCGTCT+GGG | 0.519962 | 6_3:+6149089 | None:intergenic |
| TGAGCAGGGACGGTGGTAGT+GGG | 0.521978 | 6_3:+6151262 | None:intergenic |
| GACGGGAAGTATGTAGTGGC+AGG | 0.522246 | 6_3:-6149085 | Msa0935570:CDS |
| GATGATTTATTGGTCACAGC+TGG | 0.522307 | 6_3:-6149742 | Msa0935570:CDS |
| TAATCATCTCTCTCCGTCGA+CGG | 0.523790 | 6_3:-6151315 | Msa0935570:CDS |
| AGTTGAGGCTGCAGCAAACA+TGG | 0.526145 | 6_3:+6148952 | None:intergenic |
| GTAGTGGCAGGCTCAGGAGG+CGG | 0.527933 | 6_3:-6149073 | Msa0935570:CDS |
| AGGTACAATTTGGAGTCTAC+CGG | 0.528433 | 6_3:-6149592 | Msa0935570:CDS |
| AAGTATGTAGTGGCAGGCTC+AGG | 0.532223 | 6_3:-6149079 | Msa0935570:CDS |
| CCTTGTCTTTGCCGTAGCAA+TGG | 0.536478 | 6_3:-6149350 | Msa0935570:CDS |
| AGGCTGCAGCAAACATGGCT+CGG | 0.538980 | 6_3:+6148957 | None:intergenic |
| GAACAGAGCAACGCCGTCGA+CGG | 0.544315 | 6_3:+6151302 | None:intergenic |
| TAAATACCTCAACGATTCTC+CGG | 0.546938 | 6_3:+6149573 | None:intergenic |
| AGAGAGGAGAGAGCGATGAA+TGG | 0.547467 | 6_3:+6151346 | None:intergenic |
| TGCACGCTTGGAGTATTGAC+AGG | 0.554704 | 6_3:-6149045 | Msa0935570:CDS |
| GAGGCTACATTTACCCCAGA+CGG | 0.561514 | 6_3:-6149103 | Msa0935570:CDS |
| TTTAGTTTGGAACCATCTCA+TGG | 0.564025 | 6_3:-6149136 | Msa0935570:CDS |
| TCTTTGCCGTAGCAATGGAA+GGG | 0.575146 | 6_3:-6149345 | Msa0935570:CDS |
| TATGTAGTGGCAGGCTCAGG+AGG | 0.576632 | 6_3:-6149076 | Msa0935570:CDS |
| CTTTGCCGTAGCAATGGAAG+GGG | 0.578605 | 6_3:-6149344 | Msa0935570:CDS |
| GTCAATACTCCAAGCGTGCA+TGG | 0.585442 | 6_3:+6149048 | None:intergenic |
| GCAGGGACGGTGGTAGTGGG+CGG | 0.588301 | 6_3:+6151265 | None:intergenic |
| ACCGACAAGAAAAGTGTCGA+AGG | 0.593960 | 6_3:+6149279 | None:intergenic |
| TACCTGAAATTGAGCAGGGA+CGG | 0.595381 | 6_3:+6151252 | None:intergenic |
| GATTCACGTTCATATGACAA+AGG | 0.595643 | 6_3:-6149304 | Msa0935570:CDS |
| AATAATCAATCGCACAACAA+AGG | 0.599720 | 6_3:-6151371 | Msa0935570:CDS |
| GCAGCAAACATGGCTCGGCG+AGG | 0.601478 | 6_3:+6148962 | None:intergenic |
| CCAAAATGTGAGAACAGTTG+AGG | 0.608499 | 6_3:+6148937 | None:intergenic |
| GATGATTAGATGAAGCAGAG+AGG | 0.609920 | 6_3:+6151330 | None:intergenic |
| GGTAAATGTAGCCTCTATTG+AGG | 0.612541 | 6_3:+6149111 | None:intergenic |
| TATGCCCCTTGAAGTATCGT+AGG | 0.614852 | 6_3:+6149530 | None:intergenic |
| TCTATTGAGGTACCATGAGA+TGG | 0.615901 | 6_3:+6149124 | None:intergenic |
| CCAATAAATCATCCTTACGA+TGG | 0.616705 | 6_3:+6149752 | None:intergenic |
| CTGAAATTGAGCAGGGACGG+TGG | 0.616934 | 6_3:+6151255 | None:intergenic |
| TGTCGGTGGTGATACTGCTG+AGG | 0.617340 | 6_3:-6149263 | Msa0935570:CDS |
| GGAGCCCATTTCAAGCATGA+AGG | 0.618503 | 6_3:+6148983 | None:intergenic |
| TGTTGGTCATAGGCAACAGT+AGG | 0.620319 | 6_3:+6149376 | None:intergenic |
| GGAATCACGAGGTAGCATGT+TGG | 0.625091 | 6_3:-6149024 | Msa0935570:CDS |
| CCATTGCTACGGCAAAGACA+AGG | 0.633354 | 6_3:+6149350 | None:intergenic |
| CCTTGAAGTATCGTAGGCAG+CGG | 0.633936 | 6_3:+6149536 | None:intergenic |
| TATGTTCTTGATGCATATGG+AGG | 0.651997 | 6_3:-6149175 | Msa0935570:CDS |
| AAGAGCATATGACAGAACTT+GGG | 0.654133 | 6_3:+6149617 | None:intergenic |
| AAATTACCTGAAATTGAGCA+GGG | 0.654341 | 6_3:+6151248 | None:intergenic |
| ACCACTTATCATAAGAAACA+TGG | 0.669454 | 6_3:-6149667 | Msa0935570:CDS |
| CTACGTGTAAATGCATGCCA+GGG | 0.671133 | 6_3:-6149421 | Msa0935570:CDS |
| CCGACAAGAAAAGTGTCGAA+GGG | 0.674207 | 6_3:+6149280 | None:intergenic |
| CACTACATACTTCCCGTCTG+GGG | 0.675821 | 6_3:+6149090 | None:intergenic |
| CAGGGAATCTTACATGTACG+CGG | 0.690267 | 6_3:-6149403 | Msa0935570:CDS |
| AGTCTACCGGAGAATCGTTG+AGG | 0.691573 | 6_3:-6149579 | Msa0935570:CDS |
| TTTGCCGTAGCAATGGAAGG+GGG | 0.702301 | 6_3:-6149343 | Msa0935570:CDS |
| CTGAAAGCTGAAGAATATGG+CGG | 0.702890 | 6_3:-6148893 | Msa0935570:CDS |
| GCTGCCTACGATACTTCAAG+GGG | 0.709960 | 6_3:-6149534 | Msa0935570:CDS |
| TTTATTGGTCACAGCTGGTG+AGG | 0.710015 | 6_3:-6149737 | Msa0935570:CDS |
| GAGTATTGACAGGAATCACG+AGG | 0.726880 | 6_3:-6149035 | Msa0935570:CDS |
| ACTGTTGCCTATGACCAACA+AGG | 0.730445 | 6_3:-6149373 | Msa0935570:CDS |
| TATGGAGGAGATAAGCGCTG+CGG | 0.743293 | 6_3:-6149160 | Msa0935570:CDS |
| GATCCCATAACCTTACACTG+TGG | 0.791126 | 6_3:+6149443 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAACTTATAAGTATAATTT+TGG | + | chr6_3:6149770-6149789 | None:intergenic | 10.0% |
| !! | TGAATGATTATTATAAAAAA+TGG | - | chr6_3:6150120-6150139 | Msa0935570:intron | 10.0% |
| !! | TTATTTACAGTTTAAATATT+GGG | - | chr6_3:6150261-6150280 | Msa0935570:intron | 10.0% |
| !!! | AATTGTGTTTTTTTTTAATT+AGG | - | chr6_3:6150302-6150321 | Msa0935570:intron | 10.0% |
| !!! | ATTGTGTTTTTTTTTAATTA+GGG | - | chr6_3:6150303-6150322 | Msa0935570:intron | 10.0% |
| !! | AAAAAAAAATGGTTAACATA+AGG | + | chr6_3:6149034-6149053 | None:intergenic | 15.0% |
| !! | GTTATTTACAGTTTAAATAT+TGG | - | chr6_3:6150260-6150279 | Msa0935570:intron | 15.0% |
| !!! | TTGTGTTTTTTTTTAATTAG+GGG | - | chr6_3:6150304-6150323 | Msa0935570:intron | 15.0% |
| !!! | ATAATGTTTTAGTGTATTTG+AGG | - | chr6_3:6149091-6149110 | Msa0935570:CDS | 20.0% |
| !!! | TAAAATCTACTTAAAAGCAT+TGG | - | chr6_3:6150023-6150042 | Msa0935570:intron | 20.0% |
| !!! | TATTTGAGGAGTAATTTGTT+TGG | - | chr6_3:6149105-6149124 | Msa0935570:CDS | 25.0% |
| ! | AGAATTGTTTATGACATGTT+TGG | - | chr6_3:6149216-6149235 | Msa0935570:CDS | 25.0% |
| !!! | CTTTCAAGTTGAATTGATTT+TGG | - | chr6_3:6149302-6149321 | Msa0935570:CDS | 25.0% |
| !!! | TCTCAAAATTTTAGTTCTGT+TGG | - | chr6_3:6149651-6149670 | Msa0935570:CDS | 25.0% |
| ! | TCAAGGCTTCAAAAAAAATT+AGG | - | chr6_3:6149742-6149761 | Msa0935570:CDS | 25.0% |
| ! | TTTCCTTCTTTATACGATTT+CGG | + | chr6_3:6149886-6149905 | None:intergenic | 25.0% |
| ! | AATCGTATAAAGAAGGAAAA+TGG | - | chr6_3:6149887-6149906 | Msa0935570:intron | 25.0% |
| ! | ATCGTATAAAGAAGGAAAAT+GGG | - | chr6_3:6149888-6149907 | Msa0935570:intron | 25.0% |
| ! | ATAATGTTTGAGTGTATTTG+AGG | + | chr6_3:6150077-6150096 | None:intergenic | 25.0% |
| ! | TACATATCTCCAATTTGATT+GGG | - | chr6_3:6150344-6150363 | Msa0935570:intron | 25.0% |
| ! | GATATTAAATTCAGCAATGA+TGG | - | chr6_3:6151000-6151019 | Msa0935570:intron | 25.0% |
| ! | ATATATGTTCTTGATGCATA+TGG | - | chr6_3:6151057-6151076 | Msa0935570:intron | 25.0% |
| TTGTTGTGCGATTGATTATT+GGG | + | chr6_3:6148864-6148883 | None:intergenic | 30.0% | |
| ! | TTTGTTGTGCGATTGATTAT+TGG | + | chr6_3:6148865-6148884 | None:intergenic | 30.0% |
| AATAATCAATCGCACAACAA+AGG | - | chr6_3:6148864-6148883 | Msa0935570:CDS | 30.0% | |
| AAATTACCTGAAATTGAGCA+GGG | + | chr6_3:6148990-6149009 | None:intergenic | 30.0% | |
| TACACCTCGAAAATAAATTC+CGG | + | chr6_3:6149197-6149216 | None:intergenic | 30.0% | |
| !! | CTTTCGAGTAGAATTGATTT+TGG | - | chr6_3:6149242-6149261 | Msa0935570:CDS | 30.0% |
| !!! | TCAAGTTGAATTGATTTTGG+AGG | - | chr6_3:6149305-6149324 | Msa0935570:CDS | 30.0% |
| ! | AGAATTGATTCTCACATGTT+TGG | - | chr6_3:6149331-6149350 | Msa0935570:CDS | 30.0% |
| ! | AGAATTGATTCTCACATGTT+TGG | - | chr6_3:6149331-6149350 | Msa0935570:CDS | 30.0% |
| TCAAGTAGAATTGATTATGG+AGG | + | chr6_3:6149417-6149436 | None:intergenic | 30.0% | |
| GCTTCAAGTAGAATTGATTA+TGG | + | chr6_3:6149420-6149439 | None:intergenic | 30.0% | |
| AATCAATTCTACTTGAAGCT+AGG | - | chr6_3:6149421-6149440 | Msa0935570:CDS | 30.0% | |
| ATTATGTGTCAATGTCGTAT+CGG | + | chr6_3:6149611-6149630 | None:intergenic | 30.0% | |
| TTCCTTCTTTATACGATTTC+GGG | + | chr6_3:6149885-6149904 | None:intergenic | 30.0% | |
| TCGTATAAAGAAGGAAAATG+GGG | - | chr6_3:6149889-6149908 | Msa0935570:intron | 30.0% | |
| ! | TATTTGAGGAGCAATTTGTT+AGG | + | chr6_3:6150063-6150082 | None:intergenic | 30.0% |
| !!! | TCTTTTTTGCCTTAGTTACA+AGG | - | chr6_3:6150211-6150230 | Msa0935570:intron | 30.0% |
| AATAGTCATCCTTGTAACTA+AGG | + | chr6_3:6150223-6150242 | None:intergenic | 30.0% | |
| GTACATATCTCCAATTTGAT+TGG | - | chr6_3:6150343-6150362 | Msa0935570:intron | 30.0% | |
| ATATATCTTCCCAACATAGT+CGG | + | chr6_3:6150452-6150471 | None:intergenic | 30.0% | |
| ACCACTTATCATAAGAAACA+TGG | - | chr6_3:6150568-6150587 | Msa0935570:intron | 30.0% | |
| ACCATGTTTCTTATGATAAG+TGG | + | chr6_3:6150572-6150591 | None:intergenic | 30.0% | |
| TATTCTTCAGCTTTCAGATT+CGG | + | chr6_3:6151339-6151358 | None:intergenic | 30.0% | |
| AATCTGAAAGCTGAAGAATA+TGG | - | chr6_3:6151339-6151358 | Msa0935570:CDS | 30.0% | |
| GAAATTACCTGAAATTGAGC+AGG | + | chr6_3:6148991-6149010 | None:intergenic | 35.0% | |
| !! | TCGAGTAGAATTGATTTTGG+AGG | - | chr6_3:6149245-6149264 | Msa0935570:CDS | 35.0% |
| ! | AGAATTGATTCTGGCATGTT+TGG | - | chr6_3:6149271-6149290 | Msa0935570:CDS | 35.0% |
| ! | GAGATTTTACCTGTTGTTGT+CGG | - | chr6_3:6149483-6149502 | Msa0935570:CDS | 35.0% |
| ! | AGATTTTACCTGTTGTTGTC+GGG | - | chr6_3:6149484-6149503 | Msa0935570:CDS | 35.0% |
| AAAAACTGTCTGTGCTTCAT+AGG | + | chr6_3:6149545-6149564 | None:intergenic | 35.0% | |
| ! | TATGAAGCACAGACAGTTTT+TGG | - | chr6_3:6149544-6149563 | Msa0935570:CDS | 35.0% |
| ! | AATTTTCATGTTTGTCGCGA+TGG | - | chr6_3:6149808-6149827 | Msa0935570:intron | 35.0% |
| TTCCCGAAATCGTATAAAGA+AGG | - | chr6_3:6149880-6149899 | Msa0935570:intron | 35.0% | |
| GCTAATGAATGTCATAACCT+AGG | + | chr6_3:6149921-6149940 | None:intergenic | 35.0% | |
| ! | TTCGATTGATTTCCATCGTA+AGG | - | chr6_3:6150471-6150490 | Msa0935570:intron | 35.0% |
| CCAATAAATCATCCTTACGA+TGG | + | chr6_3:6150486-6150505 | None:intergenic | 35.0% | |
| CCATCGTAAGGATGATTTAT+TGG | - | chr6_3:6150483-6150502 | Msa0935570:intron | 35.0% | |
| ! | AAGAGCATATGACAGAACTT+GGG | + | chr6_3:6150621-6150640 | None:intergenic | 35.0% |
| ATGCTCTTCAAGGTACAATT+TGG | - | chr6_3:6150633-6150652 | Msa0935570:intron | 35.0% | |
| TAAATACCTCAACGATTCTC+CGG | + | chr6_3:6150665-6150684 | None:intergenic | 35.0% | |
| GACATGAAGCTATCATTGAT+AGG | + | chr6_3:6150760-6150779 | None:intergenic | 35.0% | |
| ATCAATGATAGCTTCATGTC+TGG | - | chr6_3:6150760-6150779 | Msa0935570:intron | 35.0% | |
| GATTCACGTTCATATGACAA+AGG | - | chr6_3:6150931-6150950 | Msa0935570:intron | 35.0% | |
| TATGTTCTTGATGCATATGG+AGG | - | chr6_3:6151060-6151079 | Msa0935570:intron | 35.0% | |
| !! | TTTAGTTTGGAACCATCTCA+TGG | - | chr6_3:6151099-6151118 | Msa0935570:intron | 35.0% |
| GATGATTAGATGAAGCAGAG+AGG | + | chr6_3:6148908-6148927 | None:intergenic | 40.0% | |
| CTCGAAAATAAATTCCGGTC+CGG | + | chr6_3:6149192-6149211 | None:intergenic | 40.0% | |
| ! | TGGAGGTGTAGAATTGATTC+TGG | - | chr6_3:6149262-6149281 | Msa0935570:CDS | 40.0% |
| TGATTCTGGCATGTTTGGAT+TGG | - | chr6_3:6149276-6149295 | Msa0935570:CDS | 40.0% | |
| !! | GCACAGACAGTTTTTGGATT+AGG | - | chr6_3:6149550-6149569 | Msa0935570:CDS | 40.0% |
| CAGTCTATGAAGCACAGATA+CGG | + | chr6_3:6149706-6149725 | None:intergenic | 40.0% | |
| !!! | TTTTTTGAAGCCTTGAGCCA+CGG | + | chr6_3:6149738-6149757 | None:intergenic | 40.0% |
| TATCTCCAATTTGATTGGGC+CGG | - | chr6_3:6150348-6150367 | Msa0935570:intron | 40.0% | |
| CCCAACATAGTCGGAAAAAA+CGG | + | chr6_3:6150443-6150462 | None:intergenic | 40.0% | |
| !!! | CCGTTTTTTCCGACTATGTT+GGG | - | chr6_3:6150440-6150459 | Msa0935570:intron | 40.0% |
| GATGATTTATTGGTCACAGC+TGG | - | chr6_3:6150493-6150512 | Msa0935570:intron | 40.0% | |
| ! | GAAGAGCATATGACAGAACT+TGG | + | chr6_3:6150622-6150641 | None:intergenic | 40.0% |
| GTTCTGTCATATGCTCTTCA+AGG | - | chr6_3:6150623-6150642 | Msa0935570:intron | 40.0% | |
| ! | AGGTACAATTTGGAGTCTAC+CGG | - | chr6_3:6150643-6150662 | Msa0935570:intron | 40.0% |
| TTGACCACAGTGTAAGGTTA+TGG | - | chr6_3:6150788-6150807 | Msa0935570:intron | 40.0% | |
| TGACCACAGTGTAAGGTTAT+GGG | - | chr6_3:6150789-6150808 | Msa0935570:intron | 40.0% | |
| ! | TCTATTGAGGTACCATGAGA+TGG | + | chr6_3:6151114-6151133 | None:intergenic | 40.0% |
| ATCTCATGGTACCTCAATAG+AGG | - | chr6_3:6151113-6151132 | Msa0935570:intron | 40.0% | |
| GGTAAATGTAGCCTCTATTG+AGG | + | chr6_3:6151127-6151146 | None:intergenic | 40.0% | |
| TGTGCCTTCATGCTTGAAAT+GGG | - | chr6_3:6151248-6151267 | Msa0935570:intron | 40.0% | |
| CCAAAATGTGAGAACAGTTG+AGG | + | chr6_3:6151301-6151320 | None:intergenic | 40.0% | |
| ! | CCTCAACTGTTCTCACATTT+TGG | - | chr6_3:6151298-6151317 | Msa0935570:CDS | 40.0% |
| ! | TTCAGATTCGGTTCGTTGTT+TGG | + | chr6_3:6151327-6151346 | None:intergenic | 40.0% |
| CTGAAAGCTGAAGAATATGG+CGG | - | chr6_3:6151342-6151361 | Msa0935570:CDS | 40.0% | |
| GTGCGATTGATTATTGGGCT+GGG | + | chr6_3:6148859-6148878 | None:intergenic | 45.0% | |
| TGTGCGATTGATTATTGGGC+TGG | + | chr6_3:6148860-6148879 | None:intergenic | 45.0% | |
| TAATCATCTCTCTCCGTCGA+CGG | - | chr6_3:6148920-6148939 | Msa0935570:CDS | 45.0% | |
| TACCTGAAATTGAGCAGGGA+CGG | + | chr6_3:6148986-6149005 | None:intergenic | 45.0% | |
| !! | TGTTTTACGTCTAGAGCTGC+CGG | - | chr6_3:6149170-6149189 | Msa0935570:CDS | 45.0% |
| !! | CGGACCGGAATTTATTTTCG+AGG | - | chr6_3:6149190-6149209 | Msa0935570:CDS | 45.0% |
| TCATAGGTTGCAGATGGTCA+GGG | + | chr6_3:6149529-6149548 | None:intergenic | 45.0% | |
| TTCATAGGTTGCAGATGGTC+AGG | + | chr6_3:6149530-6149549 | None:intergenic | 45.0% | |
| TGTGCTTCATAGGTTGCAGA+TGG | + | chr6_3:6149535-6149554 | None:intergenic | 45.0% | |
| ! | TGTCAATGTCGTATCGGTGT+CGG | + | chr6_3:6149605-6149624 | None:intergenic | 45.0% |
| ATGAAGCACAGATACGGACA+TGG | + | chr6_3:6149700-6149719 | None:intergenic | 45.0% | |
| TGTTTGTCGCGATGGTTCAA+TGG | - | chr6_3:6149816-6149835 | Msa0935570:intron | 45.0% | |
| ACGATTTCGGGAATCGAACA+CGG | + | chr6_3:6149873-6149892 | None:intergenic | 45.0% | |
| GGAAAATGGGGATCAAACCT+AGG | - | chr6_3:6149901-6149920 | Msa0935570:intron | 45.0% | |
| AGCTGGGTGGTATATGCTTA+TGG | + | chr6_3:6149943-6149962 | None:intergenic | 45.0% | |
| GAGGATGACAGCATCACTTA+CGG | - | chr6_3:6150378-6150397 | Msa0935570:intron | 45.0% | |
| AAAAACGGCTCCTATGGACA+TGG | + | chr6_3:6150428-6150447 | None:intergenic | 45.0% | |
| !!! | GCCGTTTTTTCCGACTATGT+TGG | - | chr6_3:6150439-6150458 | Msa0935570:intron | 45.0% |
| TTTATTGGTCACAGCTGGTG+AGG | - | chr6_3:6150498-6150517 | Msa0935570:intron | 45.0% | |
| !! | TATGCCCCTTGAAGTATCGT+AGG | + | chr6_3:6150708-6150727 | None:intergenic | 45.0% |
| GTTCTGTTGACCACAGTGTA+AGG | - | chr6_3:6150782-6150801 | Msa0935570:intron | 45.0% | |
| GATCCCATAACCTTACACTG+TGG | + | chr6_3:6150795-6150814 | None:intergenic | 45.0% | |
| TCTACGTGTAAATGCATGCC+AGG | - | chr6_3:6150813-6150832 | Msa0935570:intron | 45.0% | |
| CTACGTGTAAATGCATGCCA+GGG | - | chr6_3:6150814-6150833 | Msa0935570:intron | 45.0% | |
| CAGGGAATCTTACATGTACG+CGG | - | chr6_3:6150832-6150851 | Msa0935570:intron | 45.0% | |
| TGTTGGTCATAGGCAACAGT+AGG | + | chr6_3:6150862-6150881 | None:intergenic | 45.0% | |
| ACTGTTGCCTATGACCAACA+AGG | - | chr6_3:6150862-6150881 | Msa0935570:intron | 45.0% | |
| TCTTTGCCGTAGCAATGGAA+GGG | - | chr6_3:6150890-6150909 | Msa0935570:intron | 45.0% | |
| !! | CCGACAAGAAAAGTGTCGAA+GGG | + | chr6_3:6150958-6150977 | None:intergenic | 45.0% |
| ! | CCCTTCGACACTTTTCTTGT+CGG | - | chr6_3:6150955-6150974 | Msa0935570:intron | 45.0% |
| !! | ACCGACAAGAAAAGTGTCGA+AGG | + | chr6_3:6150959-6150978 | None:intergenic | 45.0% |
| ! | TTCGACACTTTTCTTGTCGG+TGG | - | chr6_3:6150958-6150977 | Msa0935570:intron | 45.0% |
| ! | TAAGCGCTGCGGATTTAGTT+TGG | - | chr6_3:6151086-6151105 | Msa0935570:intron | 45.0% |
| !! | GAGTATTGACAGGAATCACG+AGG | - | chr6_3:6151200-6151219 | Msa0935570:intron | 45.0% |
| ! | AGCATGAAGGCACACCAATA+TGG | + | chr6_3:6151242-6151261 | None:intergenic | 45.0% |
| GTGTGCCTTCATGCTTGAAA+TGG | - | chr6_3:6151247-6151266 | Msa0935570:intron | 45.0% | |
| !! | ATGATTATTATAAAAAAAAA+TGG | + | chr6_3:6149045-6149064 | None:intergenic | 5.0% |
| AGAGAGGAGAGAGCGATGAA+TGG | + | chr6_3:6148892-6148911 | None:intergenic | 50.0% | |
| TTACCTGTTGTTGTCGGGTC+AGG | - | chr6_3:6149489-6149508 | Msa0935570:CDS | 50.0% | |
| GTGCTTCATAGACTGCAACC+AGG | - | chr6_3:6149711-6149730 | Msa0935570:CDS | 50.0% | |
| CGATTTCGGGAATCGAACAC+GGG | + | chr6_3:6149872-6149891 | None:intergenic | 50.0% | |
| AATTTGATTGGGCCGGTCCT+GGG | - | chr6_3:6150355-6150374 | Msa0935570:intron | 50.0% | |
| ATTGTCCGCACCATGTCCAT+AGG | - | chr6_3:6150415-6150434 | Msa0935570:intron | 50.0% | |
| GTCGGAAAAAACGGCTCCTA+TGG | + | chr6_3:6150434-6150453 | None:intergenic | 50.0% | |
| AGTCTACCGGAGAATCGTTG+AGG | - | chr6_3:6150656-6150675 | Msa0935570:intron | 50.0% | |
| !! | CCTTGAAGTATCGTAGGCAG+CGG | + | chr6_3:6150702-6150721 | None:intergenic | 50.0% |
| CGCTGCCTACGATACTTCAA+GGG | - | chr6_3:6150700-6150719 | Msa0935570:intron | 50.0% | |
| GCTGCCTACGATACTTCAAG+GGG | - | chr6_3:6150701-6150720 | Msa0935570:intron | 50.0% | |
| CGCGTACATGTAAGATTCCC+TGG | + | chr6_3:6150834-6150853 | None:intergenic | 50.0% | |
| !! | GACAAGGCCTTGTTGGTCAT+AGG | + | chr6_3:6150872-6150891 | None:intergenic | 50.0% |
| CCATTGCTACGGCAAAGACA+AGG | + | chr6_3:6150888-6150907 | None:intergenic | 50.0% | |
| CCTTGTCTTTGCCGTAGCAA+TGG | - | chr6_3:6150885-6150904 | Msa0935570:intron | 50.0% | |
| GTCTTTGCCGTAGCAATGGA+AGG | - | chr6_3:6150889-6150908 | Msa0935570:intron | 50.0% | |
| CTTTGCCGTAGCAATGGAAG+GGG | - | chr6_3:6150891-6150910 | Msa0935570:intron | 50.0% | |
| TTTGCCGTAGCAATGGAAGG+GGG | - | chr6_3:6150892-6150911 | Msa0935570:intron | 50.0% | |
| ! | TATGGAGGAGATAAGCGCTG+CGG | - | chr6_3:6151075-6151094 | Msa0935570:intron | 50.0% |
| GAGGCTACATTTACCCCAGA+CGG | - | chr6_3:6151132-6151151 | Msa0935570:intron | 50.0% | |
| AGGCTACATTTACCCCAGAC+GGG | - | chr6_3:6151133-6151152 | Msa0935570:intron | 50.0% | |
| CACTACATACTTCCCGTCTG+GGG | + | chr6_3:6151148-6151167 | None:intergenic | 50.0% | |
| CCACTACATACTTCCCGTCT+GGG | + | chr6_3:6151149-6151168 | None:intergenic | 50.0% | |
| AAGTATGTAGTGGCAGGCTC+AGG | - | chr6_3:6151156-6151175 | Msa0935570:intron | 50.0% | |
| GTCAATACTCCAAGCGTGCA+TGG | + | chr6_3:6151190-6151209 | None:intergenic | 50.0% | |
| !! | TGCACGCTTGGAGTATTGAC+AGG | - | chr6_3:6151190-6151209 | Msa0935570:intron | 50.0% |
| GGAATCACGAGGTAGCATGT+TGG | - | chr6_3:6151211-6151230 | Msa0935570:intron | 50.0% | |
| GCATGTTGGAGCAGCCATAT+TGG | - | chr6_3:6151225-6151244 | Msa0935570:intron | 50.0% | |
| GGAGCCCATTTCAAGCATGA+AGG | + | chr6_3:6151255-6151274 | None:intergenic | 50.0% | |
| AGTTGAGGCTGCAGCAAACA+TGG | + | chr6_3:6151286-6151305 | None:intergenic | 50.0% | |
| CTGAAATTGAGCAGGGACGG+TGG | + | chr6_3:6148983-6149002 | None:intergenic | 55.0% | |
| CACCGTCCCTGCTCAATTTC+AGG | - | chr6_3:6148981-6149000 | Msa0935570:CDS | 55.0% | |
| AGGTTGCAGATGGTCAGGGT+CGG | + | chr6_3:6149525-6149544 | None:intergenic | 55.0% | |
| GATTAGGCGTGTCCCTGTGT+CGG | - | chr6_3:6149566-6149585 | Msa0935570:CDS | 55.0% | |
| ATAGACTGCAACCAGGTCCG+TGG | - | chr6_3:6149718-6149737 | Msa0935570:CDS | 55.0% | |
| ATACCACCCAGCTGTAGTGC+TGG | - | chr6_3:6149950-6149969 | Msa0935570:intron | 55.0% | |
| CAGGACCGGCCCAATCAAAT+TGG | + | chr6_3:6150356-6150375 | None:intergenic | 55.0% | |
| CAATTTGATTGGGCCGGTCC+TGG | - | chr6_3:6150354-6150373 | Msa0935570:intron | 55.0% | |
| ATTTGATTGGGCCGGTCCTG+GGG | - | chr6_3:6150356-6150375 | Msa0935570:intron | 55.0% | |
| CCGCTGCCTACGATACTTCA+AGG | - | chr6_3:6150699-6150718 | Msa0935570:intron | 55.0% | |
| ! | CGGCAAAGACAAGGCCTTGT+TGG | + | chr6_3:6150879-6150898 | None:intergenic | 55.0% |
| AGCTCCCCCTTCCATTGCTA+CGG | + | chr6_3:6150899-6150918 | None:intergenic | 55.0% | |
| TGTCGGTGGTGATACTGCTG+AGG | - | chr6_3:6150972-6150991 | Msa0935570:intron | 55.0% | |
| ! | CCCAGACGGGAAGTATGTAG+TGG | - | chr6_3:6151146-6151165 | Msa0935570:intron | 55.0% |
| GCCACTACATACTTCCCGTC+TGG | + | chr6_3:6151150-6151169 | None:intergenic | 55.0% | |
| ! | GACGGGAAGTATGTAGTGGC+AGG | - | chr6_3:6151150-6151169 | Msa0935570:intron | 55.0% |
| TATGTAGTGGCAGGCTCAGG+AGG | - | chr6_3:6151159-6151178 | Msa0935570:intron | 55.0% | |
| AGGCTGCAGCAAACATGGCT+CGG | + | chr6_3:6151281-6151300 | None:intergenic | 55.0% | |
| TTGGGGCTGAAGTCCTGCTT+CGG | + | chr6_3:6151376-6151395 | None:intergenic | 55.0% | |
| GAACAGAGCAACGCCGTCGA+CGG | + | chr6_3:6148936-6148955 | None:intergenic | 60.0% | |
| TGAGCAGGGACGGTGGTAGT+GGG | + | chr6_3:6148976-6148995 | None:intergenic | 60.0% | |
| TTGAGCAGGGACGGTGGTAG+TGG | + | chr6_3:6148977-6148996 | None:intergenic | 60.0% | |
| ! | TACGTCTAGAGCTGCCGGAC+CGG | - | chr6_3:6149175-6149194 | Msa0935570:CDS | 60.0% |
| CCTCCTGACCCGACAACAAC+AGG | + | chr6_3:6149495-6149514 | None:intergenic | 60.0% | |
| CCTGTTGTTGTCGGGTCAGG+AGG | - | chr6_3:6149492-6149511 | Msa0935570:CDS | 60.0% | |
| GTTGTCGGGTCAGGAGGATC+AGG | - | chr6_3:6149498-6149517 | Msa0935570:CDS | 60.0% | |
| CACGACACGTGTCCGACACA+GGG | + | chr6_3:6149581-6149600 | None:intergenic | 60.0% | |
| ACACGACACGTGTCCGACAC+AGG | + | chr6_3:6149582-6149601 | None:intergenic | 60.0% | |
| CCAGCACCAGCACTACAGCT+GGG | + | chr6_3:6149959-6149978 | None:intergenic | 60.0% | |
| TCCAGCACCAGCACTACAGC+TGG | + | chr6_3:6149960-6149979 | None:intergenic | 60.0% | |
| GTGATGCTGTCATCCTCCCC+AGG | + | chr6_3:6150375-6150394 | None:intergenic | 60.0% | |
| CGGCTCCTATGGACATGGTG+CGG | + | chr6_3:6150423-6150442 | None:intergenic | 60.0% | |
| GCAACCAGGTCCGTGGCTCA+AGG | - | chr6_3:6149725-6149744 | Msa0935570:CDS | 65.0% | |
| GAAGCCTTGAGCCACGGACC+TGG | + | chr6_3:6149732-6149751 | None:intergenic | 65.0% | |
| GCACCAGCACTACAGCTGGG+TGG | + | chr6_3:6149956-6149975 | None:intergenic | 65.0% | |
| !! | CCCAGCTGTAGTGCTGGTGC+TGG | - | chr6_3:6149956-6149975 | Msa0935570:intron | 65.0% |
| GCTGTCATCCTCCCCAGGAC+CGG | + | chr6_3:6150370-6150389 | None:intergenic | 65.0% | |
| GTAGTGGCAGGCTCAGGAGG+CGG | - | chr6_3:6151162-6151181 | Msa0935570:intron | 65.0% | |
| TAGTGGCAGGCTCAGGAGGC+GGG | - | chr6_3:6151163-6151182 | Msa0935570:intron | 65.0% | |
| ! | GCAGCAAACATGGCTCGGCG+AGG | + | chr6_3:6151276-6151295 | None:intergenic | 65.0% |
| !! | GGACGGTGGTAGTGGGCGGT+GGG | + | chr6_3:6148969-6148988 | None:intergenic | 70.0% |
| !! | GCAGGGACGGTGGTAGTGGG+CGG | + | chr6_3:6148973-6148992 | None:intergenic | 70.0% |
| TGATTGGGCCGGTCCTGGGG+AGG | - | chr6_3:6150359-6150378 | Msa0935570:intron | 70.0% | |
| GAGGCGGGACCATGCACGCT+TGG | - | chr6_3:6151178-6151197 | Msa0935570:intron | 70.0% | |
| AGTGGGCGGTGGGCGGTGGA+CGG | + | chr6_3:6148959-6148978 | None:intergenic | 75.0% | |
| !! | TGGTAGTGGGCGGTGGGCGG+TGG | + | chr6_3:6148963-6148982 | None:intergenic | 75.0% |
| !! | CGGTGGTAGTGGGCGGTGGG+CGG | + | chr6_3:6148966-6148985 | None:intergenic | 75.0% |
| !! | GGGACGGTGGTAGTGGGCGG+TGG | + | chr6_3:6148970-6148989 | None:intergenic | 75.0% |
| GGCGGCACAGACGCCGAAGC+AGG | - | chr6_3:6151360-6151379 | Msa0935570:CDS | 75.0% | |
| ! | GTGGGCGGTGGGCGGTGGAC+GGG | + | chr6_3:6148958-6148977 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 6148856 | 6151401 | 6148856 | ID=Msa0935570;Name=Msa0935570 |
| chr6_3 | mRNA | 6148856 | 6151401 | 6148856 | ID=Msa0935570-mRNA-1;Parent=Msa0935570;Name=Msa0935570-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|0|0|2|0|361 |
| chr6_3 | exon | 6151255 | 6151401 | 6151255 | ID=Msa0935570-mRNA-1:exon:1907;Parent=Msa0935570-mRNA-1 |
| chr6_3 | exon | 6148856 | 6149791 | 6148856 | ID=Msa0935570-mRNA-1:exon:1906;Parent=Msa0935570-mRNA-1 |
| chr6_3 | CDS | 6151255 | 6151401 | 6151255 | ID=Msa0935570-mRNA-1:cds;Parent=Msa0935570-mRNA-1 |
| chr6_3 | CDS | 6148856 | 6149791 | 6148856 | ID=Msa0935570-mRNA-1:cds;Parent=Msa0935570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
