AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1206150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1206150 MtrunA17_Chr4g0055191 98.089 157 3 0 1 157 1 157 4.88e-116 324
Msa1206150 MtrunA17_Chr5g0400051 60.000 170 45 10 3 157 4 165 1.70e-55 172
Msa1206150 MtrunA17_Chr8g0336591 60.976 82 25 2 61 142 32 106 2.26e-29 103
Msa1206150 MtrunA17_Chr3g0124361 61.702 47 18 0 71 117 122 168 8.13e-15 68.6
Msa1206150 MtrunA17_Chr8g0344991 63.636 44 16 0 73 116 39 82 1.67e-14 65.9
Msa1206150 MtrunA17_Chr3g0115551 53.061 49 23 0 69 117 86 134 1.17e-12 62.0
Msa1206150 MtrunA17_Chr2g0295651 46.552 58 31 0 62 119 53 110 1.85e-12 61.2
Msa1206150 MtrunA17_Chr2g0301141 64.444 45 15 1 73 117 186 229 2.04e-11 60.1
Msa1206150 MtrunA17_Chr4g0070221 42.105 76 43 1 42 117 147 221 2.41e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1206150 AT4G17670.1 48.171 164 73 4 1 157 1 159 5.29e-38 127
Msa1206150 AT5G47060.2 62.000 100 32 2 59 157 83 177 8.87e-38 127
Msa1206150 AT5G47060.1 62.000 100 32 2 59 157 83 177 8.87e-38 127
Msa1206150 AT2G44670.1 51.136 88 36 1 70 157 13 93 2.25e-23 88.2
Msa1206150 AT1G22160.1 56.863 51 22 0 68 118 73 123 8.59e-15 67.8
Msa1206150 AT1G78020.1 43.529 85 43 3 38 118 51 134 1.55e-14 67.4
Msa1206150 AT5G65040.1 50.877 57 27 1 73 129 57 112 8.30e-14 64.3
Msa1206150 AT1G53885.1 43.243 74 38 1 73 146 42 111 3.50e-13 63.2
Msa1206150 AT1G53903.1 43.243 74 38 1 73 146 42 111 3.50e-13 63.2
Msa1206150 AT4G39795.1 46.296 54 29 0 73 126 73 126 9.14e-11 56.6

Find 46 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTGTAAATGGTTTACTTT+TGG 0.244663 8_1:-63012261 Msa1206150:three_prime_UTR
TATTAAAATTGAAGGGGTTT+TGG 0.291458 8_1:+63013048 None:intergenic
AAAAGTGTGTTTCCTTGTTT+TGG 0.307447 8_1:-63012238 Msa1206150:three_prime_UTR
GCAGAGAATGTAACTGTAAA+TGG 0.317276 8_1:-63012272 Msa1206150:three_prime_UTR
TATGAAGGCTTTGAGGAATA+AGG 0.349320 8_1:-63012526 Msa1206150:CDS
GTGGTTGTGTTGTGCTTATA+TGG 0.357268 8_1:-63012114 Msa1206150:three_prime_UTR
CTACACTCTTCACTACAAAA+AGG 0.366837 8_1:+63012606 None:intergenic
CCTCAATCTATCTATAGAAA+TGG 0.387484 8_1:-63012036 Msa1206150:three_prime_UTR
CATGAGTTTATTAAAATTGA+AGG 0.407097 8_1:+63013040 None:intergenic
GAATCTTTCTTCATCTATGA+AGG 0.411030 8_1:-63012541 Msa1206150:CDS
CTTCATCTATGAAGGCTTTG+AGG 0.411788 8_1:-63012533 Msa1206150:CDS
ATAAAGATATCTTCATGTAT+AGG 0.420008 8_1:-63012761 Msa1206150:intron
TCATAGAATCTTCCAGATCT+AGG 0.432287 8_1:+63012855 None:intergenic
TATGTTTCTTCACCTAGATC+TGG 0.436471 8_1:-63012867 Msa1206150:CDS
ATCTAGGTGAAGAAACATAA+AGG 0.450130 8_1:+63012871 None:intergenic
AAACTGAGTCATTTCATTGA+AGG 0.455100 8_1:+63012209 None:intergenic
AATTCTTCAAACAAGGTTCA+AGG 0.457717 8_1:-63012489 Msa1206150:CDS
CAAGATTATTCCTTTCGTAA+AGG 0.463468 8_1:-63012465 Msa1206150:CDS
AACTGAGTCATTTCATTGAA+GGG 0.494363 8_1:+63012210 None:intergenic
ATGAGTTTATTAAAATTGAA+GGG 0.500742 8_1:+63013041 None:intergenic
CACGCCATATAAATTACAAA+AGG 0.509155 8_1:+63012134 None:intergenic
CCATTTCTATAGATAGATTG+AGG 0.513071 8_1:+63012036 None:intergenic
CTTTGTAACAAACCACTTGG+TGG 0.515974 8_1:-63012786 Msa1206150:CDS
GAAATTTGTAGAGAGAGTGA+AGG 0.519119 8_1:+63013087 None:intergenic
AAATTTGTAGAGAGAGTGAA+GGG 0.539246 8_1:+63013088 None:intergenic
TACAAAATCTATGATAACCA+TGG 0.556899 8_1:-63012922 Msa1206150:CDS
AAGCTTCAAGAAAGTGAGGT+TGG 0.558264 8_1:+63012814 None:intergenic
CGAACAAGAGTCAATAGAGA+AGG 0.565185 8_1:-63012302 Msa1206150:three_prime_UTR
TTTAGCTTCCTTAAAAGACA+TGG 0.568911 8_1:-63012976 Msa1206150:CDS
GCCATATAAATTACAAAAGG+AGG 0.569172 8_1:+63012137 None:intergenic
GGTCACACTGTTAGATTGCA+CGG 0.571251 8_1:+63012010 None:intergenic
TGAGTTTATTAAAATTGAAG+GGG 0.585248 8_1:+63013042 None:intergenic
ACAAAATCTATGATAACCAT+GGG 0.587457 8_1:-63012921 Msa1206150:CDS
AATAGCTGTTCCTTTACGAA+AGG 0.588257 8_1:+63012455 None:intergenic
GAACAAGCTTCAAGAAAGTG+AGG 0.594454 8_1:+63012810 None:intergenic
ATATAAATTACAAAAGGAGG+AGG 0.595330 8_1:+63012140 None:intergenic
AAAATCTAATTCTTCAAACA+AGG 0.600129 8_1:-63012496 Msa1206150:CDS
AGTATTATTGACATAACCCA+TGG 0.603157 8_1:+63012905 None:intergenic
TGAAGGGATCTTCCAAAACA+AGG 0.605895 8_1:+63012226 None:intergenic
TGGTCTTGTTCTAAGTAACA+AGG 0.607552 8_1:+63013002 None:intergenic
TCTCTTTGTAACAAACCACT+TGG 0.609904 8_1:-63012789 Msa1206150:CDS
ATGGATGTTGCAAGTTATCG+TGG 0.615490 8_1:-63012957 Msa1206150:CDS
ATATCTTTATTGCCACCAAG+TGG 0.645406 8_1:+63012774 None:intergenic
GAACAAGAGTCAATAGAGAA+GGG 0.648837 8_1:-63012301 Msa1206150:three_prime_UTR
AGATGGAACTGAATATACAA+TGG 0.668750 8_1:-63012077 Msa1206150:three_prime_UTR
TGTTACTTAGAACAAGACCA+CGG 0.706661 8_1:-63012999 Msa1206150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTCAATTAAAAAAACAT+GGG + chr8_1:63012374-63012393 None:intergenic 10.0%
!! ATATTTCAATTAAAAAAACA+TGG + chr8_1:63012375-63012394 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTTGTCA+CGG + chr8_1:63012727-63012746 None:intergenic 10.0%
!! TGACAAAAAAAAAAAAAAAA+AGG - chr8_1:63012727-63012746 Msa1206150:intron 10.0%
!! TATTTCAATTAAAAAAACAT+GGG + chr8_1:63012374-63012393 None:intergenic 10.0%
!! ATATTTCAATTAAAAAAACA+TGG + chr8_1:63012375-63012394 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTTGTCA+CGG + chr8_1:63012727-63012746 None:intergenic 10.0%
!! TGACAAAAAAAAAAAAAAAA+AGG - chr8_1:63012727-63012746 Msa1206150:intron 10.0%
!! ATGAGTTTATTAAAATTGAA+GGG + chr8_1:63012067-63012086 None:intergenic 15.0%
!!! TTTTTTTTTTTTTGAGATCA+AGG - chr8_1:63012932-63012951 Msa1206150:CDS 15.0%
!! ATGAGTTTATTAAAATTGAA+GGG + chr8_1:63012067-63012086 None:intergenic 15.0%
!!! TTTTTTTTTTTTTGAGATCA+AGG - chr8_1:63012932-63012951 Msa1206150:CDS 15.0%
!! TGAGTTTATTAAAATTGAAG+GGG + chr8_1:63012066-63012085 None:intergenic 20.0%
!! CATGAGTTTATTAAAATTGA+AGG + chr8_1:63012068-63012087 None:intergenic 20.0%
!!! CTTCAATTTTAATAAACTCA+TGG - chr8_1:63012066-63012085 Msa1206150:three_prime_UTR 20.0%
!! ATAAAGATATCTTCATGTAT+AGG - chr8_1:63012344-63012363 Msa1206150:three_prime_UTR 20.0%
!!! TTCATAATAAGGGTTTTTTA+AGG + chr8_1:63012403-63012422 None:intergenic 20.0%
!! CATGAAAATCTTCATAATAA+GGG + chr8_1:63012413-63012432 None:intergenic 20.0%
!! TCATGAAAATCTTCATAATA+AGG + chr8_1:63012414-63012433 None:intergenic 20.0%
!!! GATCGATGTTTTTTTTTTTA+AGG - chr8_1:63012432-63012451 Msa1206150:exon 20.0%
!! AAAATCTAATTCTTCAAACA+AGG - chr8_1:63012609-63012628 Msa1206150:CDS 20.0%
!! TGAGTTTATTAAAATTGAAG+GGG + chr8_1:63012066-63012085 None:intergenic 20.0%
!! CATGAGTTTATTAAAATTGA+AGG + chr8_1:63012068-63012087 None:intergenic 20.0%
!!! CTTCAATTTTAATAAACTCA+TGG - chr8_1:63012066-63012085 Msa1206150:three_prime_UTR 20.0%
!! ATAAAGATATCTTCATGTAT+AGG - chr8_1:63012344-63012363 Msa1206150:three_prime_UTR 20.0%
!!! TTCATAATAAGGGTTTTTTA+AGG + chr8_1:63012403-63012422 None:intergenic 20.0%
!! CATGAAAATCTTCATAATAA+GGG + chr8_1:63012413-63012432 None:intergenic 20.0%
!! TCATGAAAATCTTCATAATA+AGG + chr8_1:63012414-63012433 None:intergenic 20.0%
!!! GATCGATGTTTTTTTTTTTA+AGG - chr8_1:63012432-63012451 Msa1206150:exon 20.0%
!! AAAATCTAATTCTTCAAACA+AGG - chr8_1:63012609-63012628 Msa1206150:CDS 20.0%
!! TATTAAAATTGAAGGGGTTT+TGG + chr8_1:63012060-63012079 None:intergenic 25.0%
! TACAAAATCTATGATAACCA+TGG - chr8_1:63012183-63012202 Msa1206150:three_prime_UTR 25.0%
! ACAAAATCTATGATAACCAT+GGG - chr8_1:63012184-63012203 Msa1206150:three_prime_UTR 25.0%
!!! TGATTGATTTTAATTTGTGC+AGG - chr8_1:63012467-63012486 Msa1206150:CDS 25.0%
!!! GATTGATTTTAATTTGTGCA+GGG - chr8_1:63012468-63012487 Msa1206150:CDS 25.0%
!!! ATTGATTTTAATTTGTGCAG+GGG - chr8_1:63012469-63012488 Msa1206150:CDS 25.0%
!! AACTGTAAATGGTTTACTTT+TGG - chr8_1:63012844-63012863 Msa1206150:CDS 25.0%
!! AATGAAATGACTCAGTTTTT+GGG - chr8_1:63012901-63012920 Msa1206150:CDS 25.0%
!!! TTTTTTTGAGATCAAGGTTT+TGG - chr8_1:63012938-63012957 Msa1206150:CDS 25.0%
! ATATAAATTACAAAAGGAGG+AGG + chr8_1:63012968-63012987 None:intergenic 25.0%
!! TCCTCCTTTTGTAATTTATA+TGG - chr8_1:63012967-63012986 Msa1206150:CDS 25.0%
!! TATTAAAATTGAAGGGGTTT+TGG + chr8_1:63012060-63012079 None:intergenic 25.0%
! TACAAAATCTATGATAACCA+TGG - chr8_1:63012183-63012202 Msa1206150:three_prime_UTR 25.0%
! ACAAAATCTATGATAACCAT+GGG - chr8_1:63012184-63012203 Msa1206150:three_prime_UTR 25.0%
!!! TGATTGATTTTAATTTGTGC+AGG - chr8_1:63012467-63012486 Msa1206150:CDS 25.0%
!!! GATTGATTTTAATTTGTGCA+GGG - chr8_1:63012468-63012487 Msa1206150:CDS 25.0%
!!! ATTGATTTTAATTTGTGCAG+GGG - chr8_1:63012469-63012488 Msa1206150:CDS 25.0%
!! AACTGTAAATGGTTTACTTT+TGG - chr8_1:63012844-63012863 Msa1206150:CDS 25.0%
!! AATGAAATGACTCAGTTTTT+GGG - chr8_1:63012901-63012920 Msa1206150:CDS 25.0%
!!! TTTTTTTGAGATCAAGGTTT+TGG - chr8_1:63012938-63012957 Msa1206150:CDS 25.0%
! ATATAAATTACAAAAGGAGG+AGG + chr8_1:63012968-63012987 None:intergenic 25.0%
!! TCCTCCTTTTGTAATTTATA+TGG - chr8_1:63012967-63012986 Msa1206150:CDS 25.0%
! TTTAGCTTCCTTAAAAGACA+TGG - chr8_1:63012129-63012148 Msa1206150:three_prime_UTR 30.0%
AGTATTATTGACATAACCCA+TGG + chr8_1:63012203-63012222 None:intergenic 30.0%
ATCTAGGTGAAGAAACATAA+AGG + chr8_1:63012237-63012256 None:intergenic 30.0%
GAATCTTTCTTCATCTATGA+AGG - chr8_1:63012564-63012583 Msa1206150:CDS 30.0%
AATTCTTCAAACAAGGTTCA+AGG - chr8_1:63012616-63012635 Msa1206150:CDS 30.0%
CAAGATTATTCCTTTCGTAA+AGG - chr8_1:63012640-63012659 Msa1206150:intron 30.0%
!! AAAAGTGTGTTTCCTTGTTT+TGG - chr8_1:63012867-63012886 Msa1206150:CDS 30.0%
AACTGAGTCATTTCATTGAA+GGG + chr8_1:63012898-63012917 None:intergenic 30.0%
AAACTGAGTCATTTCATTGA+AGG + chr8_1:63012899-63012918 None:intergenic 30.0%
! CAATGAAATGACTCAGTTTT+TGG - chr8_1:63012900-63012919 Msa1206150:CDS 30.0%
GCCATATAAATTACAAAAGG+AGG + chr8_1:63012971-63012990 None:intergenic 30.0%
CACGCCATATAAATTACAAA+AGG + chr8_1:63012974-63012993 None:intergenic 30.0%
! CTTTTGTAATTTATATGGCG+TGG - chr8_1:63012972-63012991 Msa1206150:CDS 30.0%
!! TGGTTTCAGTTTTTCAAAGA+TGG - chr8_1:63013011-63013030 Msa1206150:CDS 30.0%
AGATGGAACTGAATATACAA+TGG - chr8_1:63013028-63013047 Msa1206150:exon 30.0%
CCATTTCTATAGATAGATTG+AGG + chr8_1:63013072-63013091 None:intergenic 30.0%
CCTCAATCTATCTATAGAAA+TGG - chr8_1:63013069-63013088 Msa1206150:five_prime_UTR 30.0%
! TTTAGCTTCCTTAAAAGACA+TGG - chr8_1:63012129-63012148 Msa1206150:three_prime_UTR 30.0%
AGTATTATTGACATAACCCA+TGG + chr8_1:63012203-63012222 None:intergenic 30.0%
ATCTAGGTGAAGAAACATAA+AGG + chr8_1:63012237-63012256 None:intergenic 30.0%
GAATCTTTCTTCATCTATGA+AGG - chr8_1:63012564-63012583 Msa1206150:CDS 30.0%
AATTCTTCAAACAAGGTTCA+AGG - chr8_1:63012616-63012635 Msa1206150:CDS 30.0%
CAAGATTATTCCTTTCGTAA+AGG - chr8_1:63012640-63012659 Msa1206150:intron 30.0%
!! AAAAGTGTGTTTCCTTGTTT+TGG - chr8_1:63012867-63012886 Msa1206150:CDS 30.0%
AACTGAGTCATTTCATTGAA+GGG + chr8_1:63012898-63012917 None:intergenic 30.0%
AAACTGAGTCATTTCATTGA+AGG + chr8_1:63012899-63012918 None:intergenic 30.0%
! CAATGAAATGACTCAGTTTT+TGG - chr8_1:63012900-63012919 Msa1206150:CDS 30.0%
GCCATATAAATTACAAAAGG+AGG + chr8_1:63012971-63012990 None:intergenic 30.0%
CACGCCATATAAATTACAAA+AGG + chr8_1:63012974-63012993 None:intergenic 30.0%
! CTTTTGTAATTTATATGGCG+TGG - chr8_1:63012972-63012991 Msa1206150:CDS 30.0%
!! TGGTTTCAGTTTTTCAAAGA+TGG - chr8_1:63013011-63013030 Msa1206150:CDS 30.0%
AGATGGAACTGAATATACAA+TGG - chr8_1:63013028-63013047 Msa1206150:exon 30.0%
CCATTTCTATAGATAGATTG+AGG + chr8_1:63013072-63013091 None:intergenic 30.0%
CCTCAATCTATCTATAGAAA+TGG - chr8_1:63013069-63013088 Msa1206150:five_prime_UTR 30.0%
!! TGGTCTTGTTCTAAGTAACA+AGG + chr8_1:63012106-63012125 None:intergenic 35.0%
! TGTTACTTAGAACAAGACCA+CGG - chr8_1:63012106-63012125 Msa1206150:three_prime_UTR 35.0%
! TGCAACATCCATGTCTTTTA+AGG + chr8_1:63012140-63012159 None:intergenic 35.0%
TATGTTTCTTCACCTAGATC+TGG - chr8_1:63012238-63012257 Msa1206150:three_prime_UTR 35.0%
TCATAGAATCTTCCAGATCT+AGG + chr8_1:63012253-63012272 None:intergenic 35.0%
TCTCTTTGTAACAAACCACT+TGG - chr8_1:63012316-63012335 Msa1206150:three_prime_UTR 35.0%
ATATCTTTATTGCCACCAAG+TGG + chr8_1:63012334-63012353 None:intergenic 35.0%
CTACACTCTTCACTACAAAA+AGG + chr8_1:63012502-63012521 None:intergenic 35.0%
!! TATGAAGGCTTTGAGGAATA+AGG - chr8_1:63012579-63012598 Msa1206150:CDS 35.0%
AATAGCTGTTCCTTTACGAA+AGG + chr8_1:63012653-63012672 None:intergenic 35.0%
!! TAGTTTTGCTTGAAGGGAAA+AGG - chr8_1:63012679-63012698 Msa1206150:intron 35.0%
GAACAAGAGTCAATAGAGAA+GGG - chr8_1:63012804-63012823 Msa1206150:CDS 35.0%
GCAGAGAATGTAACTGTAAA+TGG - chr8_1:63012833-63012852 Msa1206150:CDS 35.0%
GAAATTTGTAGAGAGAGTGA+AGG + chr8_1:63012021-63012040 None:intergenic 35.0%
!! TGGTCTTGTTCTAAGTAACA+AGG + chr8_1:63012106-63012125 None:intergenic 35.0%
! TGTTACTTAGAACAAGACCA+CGG - chr8_1:63012106-63012125 Msa1206150:three_prime_UTR 35.0%
! TGCAACATCCATGTCTTTTA+AGG + chr8_1:63012140-63012159 None:intergenic 35.0%
TATGTTTCTTCACCTAGATC+TGG - chr8_1:63012238-63012257 Msa1206150:three_prime_UTR 35.0%
TCATAGAATCTTCCAGATCT+AGG + chr8_1:63012253-63012272 None:intergenic 35.0%
TCTCTTTGTAACAAACCACT+TGG - chr8_1:63012316-63012335 Msa1206150:three_prime_UTR 35.0%
ATATCTTTATTGCCACCAAG+TGG + chr8_1:63012334-63012353 None:intergenic 35.0%
CTACACTCTTCACTACAAAA+AGG + chr8_1:63012502-63012521 None:intergenic 35.0%
!! TATGAAGGCTTTGAGGAATA+AGG - chr8_1:63012579-63012598 Msa1206150:CDS 35.0%
AATAGCTGTTCCTTTACGAA+AGG + chr8_1:63012653-63012672 None:intergenic 35.0%
!! TAGTTTTGCTTGAAGGGAAA+AGG - chr8_1:63012679-63012698 Msa1206150:intron 35.0%
GAACAAGAGTCAATAGAGAA+GGG - chr8_1:63012804-63012823 Msa1206150:CDS 35.0%
GCAGAGAATGTAACTGTAAA+TGG - chr8_1:63012833-63012852 Msa1206150:CDS 35.0%
!!! AGGGGTTTTGGTTTTGTTTG+AGG + chr8_1:63012048-63012067 None:intergenic 40.0%
!! CTTTTAAGGAAGCTAAACCG+TGG + chr8_1:63012126-63012145 None:intergenic 40.0%
ATGGATGTTGCAAGTTATCG+TGG - chr8_1:63012148-63012167 Msa1206150:three_prime_UTR 40.0%
AAGCTTCAAGAAAGTGAGGT+TGG + chr8_1:63012294-63012313 None:intergenic 40.0%
GAACAAGCTTCAAGAAAGTG+AGG + chr8_1:63012298-63012317 None:intergenic 40.0%
CTTTGTAACAAACCACTTGG+TGG - chr8_1:63012319-63012338 Msa1206150:three_prime_UTR 40.0%
CTTCATCTATGAAGGCTTTG+AGG - chr8_1:63012572-63012591 Msa1206150:CDS 40.0%
!! TGCAGCATAGTTTTGCTTGA+AGG - chr8_1:63012672-63012691 Msa1206150:intron 40.0%
!! GCAGCATAGTTTTGCTTGAA+GGG - chr8_1:63012673-63012692 Msa1206150:intron 40.0%
CGAACAAGAGTCAATAGAGA+AGG - chr8_1:63012803-63012822 Msa1206150:CDS 40.0%
TGAAGGGATCTTCCAAAACA+AGG + chr8_1:63012882-63012901 None:intergenic 40.0%
GTGGTTGTGTTGTGCTTATA+TGG - chr8_1:63012991-63013010 Msa1206150:CDS 40.0%
!!! AGGGGTTTTGGTTTTGTTTG+AGG + chr8_1:63012048-63012067 None:intergenic 40.0%
!! CTTTTAAGGAAGCTAAACCG+TGG + chr8_1:63012126-63012145 None:intergenic 40.0%
ATGGATGTTGCAAGTTATCG+TGG - chr8_1:63012148-63012167 Msa1206150:three_prime_UTR 40.0%
AAGCTTCAAGAAAGTGAGGT+TGG + chr8_1:63012294-63012313 None:intergenic 40.0%
GAACAAGCTTCAAGAAAGTG+AGG + chr8_1:63012298-63012317 None:intergenic 40.0%
CTTTGTAACAAACCACTTGG+TGG - chr8_1:63012319-63012338 Msa1206150:three_prime_UTR 40.0%
CTTCATCTATGAAGGCTTTG+AGG - chr8_1:63012572-63012591 Msa1206150:CDS 40.0%
!! TGCAGCATAGTTTTGCTTGA+AGG - chr8_1:63012672-63012691 Msa1206150:intron 40.0%
!! GCAGCATAGTTTTGCTTGAA+GGG - chr8_1:63012673-63012692 Msa1206150:intron 40.0%
CGAACAAGAGTCAATAGAGA+AGG - chr8_1:63012803-63012822 Msa1206150:CDS 40.0%
TGAAGGGATCTTCCAAAACA+AGG + chr8_1:63012882-63012901 None:intergenic 40.0%
GTGGTTGTGTTGTGCTTATA+TGG - chr8_1:63012991-63013010 Msa1206150:CDS 40.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 63012019 63013108 63012019 ID=Msa1206150;Name=Msa1206150
chr8_1 mRNA 63012019 63013108 63012019 ID=Msa1206150-mRNA-1;Parent=Msa1206150;Name=Msa1206150-mRNA-1;_AED=0.06;_eAED=0.06;_QI=66|1|1|1|1|1|2|427|157
chr8_1 exon 63012019 63012638 63012019 ID=Msa1206150-mRNA-1:exon:20433;Parent=Msa1206150-mRNA-1
chr8_1 exon 63012762 63013108 63012762 ID=Msa1206150-mRNA-1:exon:20432;Parent=Msa1206150-mRNA-1
chr8_1 five_prime_UTR 63013043 63013108 63013043 ID=Msa1206150-mRNA-1:five_prime_utr;Parent=Msa1206150-mRNA-1
chr8_1 CDS 63012762 63013042 63012762 ID=Msa1206150-mRNA-1:cds;Parent=Msa1206150-mRNA-1
chr8_1 CDS 63012446 63012638 63012446 ID=Msa1206150-mRNA-1:cds;Parent=Msa1206150-mRNA-1
chr8_1 three_prime_UTR 63012019 63012445 63012019 ID=Msa1206150-mRNA-1:three_prime_utr;Parent=Msa1206150-mRNA-1
Gene Sequence

>Msa1206150

ATGGACTCATCAATAAAACCTTGTTACTTAGAACAAGACCACGGTTTAGCTTCCTTAAAAGACATGGATGTTGCAAGTTATCGTGGCAATAGTTTTGTTACAAAATCTATGATAACCATGGGTTATGTCAATAATACTAGTTTCAAGAACCTTTATGTTTCTTCACCTAGATCTGGAAGATTCTATGATACTAGATTTGAAGATCACCAACCTCACTTTCTTGAAGCTTGTTCTCTTTGTAACAAACCACTTGGTGGCAATAAAGATATCTTCATGTATAGGGGTGACACACCTTTTTGTAGTGAAGAGTGTAGACAAGAGCAAATAGAGATAGATGAATTGAAAGAAAAAAATATGAATCTTTCTTCATCTATGAAGGCTTTGAGGAATAAGGAGCATAGAAAATCTAATTCTTCAAACAAGGTTCAAGGACAAGATTATTCCTTTCGTAAAGGAACAGCTATTGCAGCATAG
Protein sequence

>Msa1206150

MDSSIKPCYLEQDHGLASLKDMDVASYRGNSFVTKSMITMGYVNNTSFKNLYVSSPRSGRFYDTRFEDHQPHFLEACSLCNKPLGGNKDIFMYRGDTPFCSEECRQEQIEIDELKEKNMNLSSSMKALRNKEHRKSNSSNKVQGQDYSFRKGTAIAA*