AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1297910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1297910 MtrunA17_Chr4g0055191 97.452 157 4 0 1 157 1 157 2.56e-115 323
Msa1297910 MtrunA17_Chr5g0400051 60.588 170 44 10 3 157 4 165 3.64e-56 173
Msa1297910 MtrunA17_Chr8g0336591 60.976 82 25 2 61 142 32 106 2.14e-29 103
Msa1297910 MtrunA17_Chr3g0124361 61.702 47 18 0 71 117 122 168 8.39e-15 68.6
Msa1297910 MtrunA17_Chr8g0344991 63.636 44 16 0 73 116 39 82 1.58e-14 65.9
Msa1297910 MtrunA17_Chr3g0115551 46.269 67 35 1 51 117 69 134 6.24e-13 62.8
Msa1297910 MtrunA17_Chr2g0295651 46.552 58 31 0 62 119 53 110 1.78e-12 61.2
Msa1297910 MtrunA17_Chr4g0070221 42.105 76 43 1 42 117 147 221 1.95e-11 60.1
Msa1297910 MtrunA17_Chr2g0301141 64.444 45 15 1 73 117 186 229 2.02e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1297910 AT4G17670.1 48.171 164 73 4 1 157 1 159 5.77e-38 127
Msa1297910 AT5G47060.2 62.000 100 32 2 59 157 83 177 9.36e-38 127
Msa1297910 AT5G47060.1 62.000 100 32 2 59 157 83 177 9.36e-38 127
Msa1297910 AT2G44670.1 47.423 97 44 1 61 157 4 93 1.21e-23 89.0
Msa1297910 AT1G22160.1 48.529 68 33 1 51 118 58 123 8.23e-15 67.8
Msa1297910 AT1G78020.1 43.333 90 36 3 38 118 51 134 9.31e-15 68.2
Msa1297910 AT5G65040.1 50.877 57 27 1 73 129 57 112 8.13e-14 64.3
Msa1297910 AT1G53885.1 43.243 74 38 1 73 146 42 111 3.53e-13 63.2
Msa1297910 AT1G53903.1 43.243 74 38 1 73 146 42 111 3.53e-13 63.2
Msa1297910 AT4G39795.1 46.296 54 29 0 73 126 73 126 9.34e-11 56.6

Find 49 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTGTAAATGGTTTACTTT+TGG 0.244663 8_3:-58512549 Msa1297910:three_prime_UTR
AAAAGTGTGTTTCCTTGTTT+TGG 0.281819 8_3:-58512525 Msa1297910:three_prime_UTR
TATTAAAATTGAAGGGGTTT+TGG 0.291458 8_3:+58513317 None:intergenic
GCAGAGAATGTAACTGTAAA+TGG 0.317276 8_3:-58512560 Msa1297910:three_prime_UTR
TATGAAGGCTTTGAGGAATA+AGG 0.349320 8_3:-58512802 Msa1297910:CDS
AAGATTATTCCTTTCGTAAA+GGG 0.361565 8_3:-58512740 Msa1297910:CDS
CTACACTCTTCACTACAAAA+AGG 0.366837 8_3:+58512882 None:intergenic
GAGAACAAGCTTCAAGGAAG+TGG 0.366962 8_3:+58513077 None:intergenic
GTGGTTGTGTTGTGCTCATA+TGG 0.387110 8_3:-58512395 Msa1297910:three_prime_UTR
CCTCAATCTATCTATAGAAA+TGG 0.387484 8_3:-58512313 Msa1297910:three_prime_UTR
CATGAGTTTATTAAAATTGA+AGG 0.407097 8_3:+58513309 None:intergenic
GAATCTTTCTTCATCTATGA+AGG 0.411030 8_3:-58512817 Msa1297910:CDS
CTTCATCTATGAAGGCTTTG+AGG 0.411788 8_3:-58512809 Msa1297910:CDS
ATAAAGATATCTTCATGTAT+AGG 0.420008 8_3:-58513030 Msa1297910:intron
TCATAGAATCTTCCAGATCT+AGG 0.432287 8_3:+58513124 None:intergenic
TATGTTTCTTCACCTAGATC+TGG 0.436471 8_3:-58513136 Msa1297910:CDS
CAAGATTATTCCTTTCGTAA+AGG 0.446366 8_3:-58512741 Msa1297910:CDS
TACAAAGAGAACAAGCTTCA+AGG 0.448678 8_3:+58513071 None:intergenic
ATCTAGGTGAAGAAACATAA+AGG 0.450130 8_3:+58513140 None:intergenic
AAACTGAGTCATTTCATTGA+AGG 0.455100 8_3:+58512496 None:intergenic
AATTCTTCAAACAAGGTTCA+AGG 0.457717 8_3:-58512765 Msa1297910:CDS
AACTGAGTCATTTCATTGAA+GGG 0.494363 8_3:+58512497 None:intergenic
ATGAGTTTATTAAAATTGAA+GGG 0.500742 8_3:+58513310 None:intergenic
CACACCATATAGATTACAAA+AGG 0.502625 8_3:+58512415 None:intergenic
CCATTTCTATAGATAGATTG+AGG 0.513071 8_3:+58512313 None:intergenic
CTTTGTAACAAACCACTTGG+TGG 0.515974 8_3:-58513055 Msa1297910:CDS
GAAATTTGTAGAGAGAGTGA+AGG 0.519119 8_3:+58513356 None:intergenic
AGAACAAGCTTCAAGGAAGT+GGG 0.529651 8_3:+58513078 None:intergenic
AAATTTGTAGAGAGAGTGAA+GGG 0.539246 8_3:+58513357 None:intergenic
TACAAAATCTATGATAACCA+TGG 0.556899 8_3:-58513191 Msa1297910:CDS
CGAACAAGAGTCAATAGAGA+AGG 0.565185 8_3:-58512590 Msa1297910:three_prime_UTR
TTTAGCTTCCTTAAAAGACA+TGG 0.568911 8_3:-58513245 Msa1297910:CDS
GGTCACACTGTTAGATTGCA+CGG 0.571251 8_3:+58512287 None:intergenic
TGAGTTTATTAAAATTGAAG+GGG 0.585248 8_3:+58513311 None:intergenic
ACAAAATCTATGATAACCAT+GGG 0.587457 8_3:-58513190 Msa1297910:CDS
AAAATCTAATTCTTCAAACA+AGG 0.600129 8_3:-58512772 Msa1297910:CDS
ATATAGATTACAAAAGGAGG+AGG 0.602148 8_3:+58512421 None:intergenic
AGTATTATTGACATAACCCA+TGG 0.603157 8_3:+58513174 None:intergenic
TGAAGGGATCTTCCAAAACA+AGG 0.605895 8_3:+58512513 None:intergenic
TGGTCTTGTTCTAAGTAACA+AGG 0.607552 8_3:+58513271 None:intergenic
TCTCTTTGTAACAAACCACT+TGG 0.609904 8_3:-58513058 Msa1297910:CDS
ACCATATAGATTACAAAAGG+AGG 0.613025 8_3:+58512418 None:intergenic
ATGGATGTTGCAAGTTATCG+TGG 0.615490 8_3:-58513226 Msa1297910:CDS
AATAGCTGTCCCTTTACGAA+AGG 0.633199 8_3:+58512731 None:intergenic
ATATCTTTATTGCCACCAAG+TGG 0.645406 8_3:+58513043 None:intergenic
GAACAAGAGTCAATAGAGAA+GGG 0.648837 8_3:-58512589 Msa1297910:three_prime_UTR
AGAACTGAATGAATATACAA+TGG 0.661176 8_3:-58512354 Msa1297910:three_prime_UTR
GAACAAGCTTCAAGGAAGTG+GGG 0.688186 8_3:+58513079 None:intergenic
TGTTACTTAGAACAAGACCA+CGG 0.706661 8_3:-58513268 Msa1297910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTCAATAAAAAAAACAT+GGG + chr8_3:58512651-58512670 None:intergenic 10.0%
!! ATATTTCAATAAAAAAAACA+TGG + chr8_3:58512652-58512671 None:intergenic 10.0%
!!! ATCAATGTTTTTTTTTTTTA+AGG - chr8_3:58512702-58512721 Msa1297910:three_prime_UTR 10.0%
!! TATTTCAATAAAAAAAACAT+GGG + chr8_3:58512651-58512670 None:intergenic 10.0%
!! ATATTTCAATAAAAAAAACA+TGG + chr8_3:58512652-58512671 None:intergenic 10.0%
!!! ATCAATGTTTTTTTTTTTTA+AGG - chr8_3:58512702-58512721 Msa1297910:three_prime_UTR 10.0%
!! ATGAGTTTATTAAAATTGAA+GGG + chr8_3:58512344-58512363 None:intergenic 15.0%
!!! TTTTTTTTTTTTTGAGATCA+AGG - chr8_3:58513197-58513216 Msa1297910:CDS 15.0%
!! ATGAGTTTATTAAAATTGAA+GGG + chr8_3:58512344-58512363 None:intergenic 15.0%
!!! TTTTTTTTTTTTTGAGATCA+AGG - chr8_3:58513197-58513216 Msa1297910:CDS 15.0%
!! TGAGTTTATTAAAATTGAAG+GGG + chr8_3:58512343-58512362 None:intergenic 20.0%
!! CATGAGTTTATTAAAATTGA+AGG + chr8_3:58512345-58512364 None:intergenic 20.0%
!!! CTTCAATTTTAATAAACTCA+TGG - chr8_3:58512343-58512362 Msa1297910:three_prime_UTR 20.0%
!! ATAAAGATATCTTCATGTAT+AGG - chr8_3:58512621-58512640 Msa1297910:three_prime_UTR 20.0%
!! AAAATCTAATTCTTCAAACA+AGG - chr8_3:58512879-58512898 Msa1297910:CDS 20.0%
!! TGAGTTTATTAAAATTGAAG+GGG + chr8_3:58512343-58512362 None:intergenic 20.0%
!! CATGAGTTTATTAAAATTGA+AGG + chr8_3:58512345-58512364 None:intergenic 20.0%
!!! CTTCAATTTTAATAAACTCA+TGG - chr8_3:58512343-58512362 Msa1297910:three_prime_UTR 20.0%
!! ATAAAGATATCTTCATGTAT+AGG - chr8_3:58512621-58512640 Msa1297910:three_prime_UTR 20.0%
!! AAAATCTAATTCTTCAAACA+AGG - chr8_3:58512879-58512898 Msa1297910:CDS 20.0%
!! TATTAAAATTGAAGGGGTTT+TGG + chr8_3:58512337-58512356 None:intergenic 25.0%
! TACAAAATCTATGATAACCA+TGG - chr8_3:58512460-58512479 Msa1297910:three_prime_UTR 25.0%
! ACAAAATCTATGATAACCAT+GGG - chr8_3:58512461-58512480 Msa1297910:three_prime_UTR 25.0%
! ACATTGATCATGAATCATAA+GGG + chr8_3:58512690-58512709 None:intergenic 25.0%
! AACATTGATCATGAATCATA+AGG + chr8_3:58512691-58512710 None:intergenic 25.0%
!!! TGATTGATTTTAATTTGTGC+AGG - chr8_3:58512737-58512756 Msa1297910:CDS 25.0%
!!! GATTGATTTTAATTTGTGCA+GGG - chr8_3:58512738-58512757 Msa1297910:CDS 25.0%
!!! ATTGATTTTAATTTGTGCAG+GGG - chr8_3:58512739-58512758 Msa1297910:CDS 25.0%
! AAGATTATTCCTTTCGTAAA+GGG - chr8_3:58512911-58512930 Msa1297910:intron 25.0%
!! AACTGTAAATGGTTTACTTT+TGG - chr8_3:58513102-58513121 Msa1297910:CDS 25.0%
!! AATGAAATGACTCAGTTTTT+GGG - chr8_3:58513160-58513179 Msa1297910:CDS 25.0%
!!! TTTTTTTGAGATCAAGGTTT+TGG - chr8_3:58513203-58513222 Msa1297910:CDS 25.0%
! AGAACTGAATGAATATACAA+TGG - chr8_3:58513297-58513316 Msa1297910:exon 25.0%
!! TATTAAAATTGAAGGGGTTT+TGG + chr8_3:58512337-58512356 None:intergenic 25.0%
! TACAAAATCTATGATAACCA+TGG - chr8_3:58512460-58512479 Msa1297910:three_prime_UTR 25.0%
! ACAAAATCTATGATAACCAT+GGG - chr8_3:58512461-58512480 Msa1297910:three_prime_UTR 25.0%
! ACATTGATCATGAATCATAA+GGG + chr8_3:58512690-58512709 None:intergenic 25.0%
! AACATTGATCATGAATCATA+AGG + chr8_3:58512691-58512710 None:intergenic 25.0%
!!! TGATTGATTTTAATTTGTGC+AGG - chr8_3:58512737-58512756 Msa1297910:CDS 25.0%
!!! GATTGATTTTAATTTGTGCA+GGG - chr8_3:58512738-58512757 Msa1297910:CDS 25.0%
!!! ATTGATTTTAATTTGTGCAG+GGG - chr8_3:58512739-58512758 Msa1297910:CDS 25.0%
! AAGATTATTCCTTTCGTAAA+GGG - chr8_3:58512911-58512930 Msa1297910:intron 25.0%
!! AACTGTAAATGGTTTACTTT+TGG - chr8_3:58513102-58513121 Msa1297910:CDS 25.0%
!! AATGAAATGACTCAGTTTTT+GGG - chr8_3:58513160-58513179 Msa1297910:CDS 25.0%
!!! TTTTTTTGAGATCAAGGTTT+TGG - chr8_3:58513203-58513222 Msa1297910:CDS 25.0%
! AGAACTGAATGAATATACAA+TGG - chr8_3:58513297-58513316 Msa1297910:exon 25.0%
! TTTAGCTTCCTTAAAAGACA+TGG - chr8_3:58512406-58512425 Msa1297910:three_prime_UTR 30.0%
AGTATTATTGACATAACCCA+TGG + chr8_3:58512480-58512499 None:intergenic 30.0%
ATCTAGGTGAAGAAACATAA+AGG + chr8_3:58512514-58512533 None:intergenic 30.0%
! TGAATCATAAGGGTCTTTTA+AGG + chr8_3:58512680-58512699 None:intergenic 30.0%
GAATCTTTCTTCATCTATGA+AGG - chr8_3:58512834-58512853 Msa1297910:CDS 30.0%
AATTCTTCAAACAAGGTTCA+AGG - chr8_3:58512886-58512905 Msa1297910:CDS 30.0%
CAAGATTATTCCTTTCGTAA+AGG - chr8_3:58512910-58512929 Msa1297910:intron 30.0%
!! AAAAGTGTGTTTCCTTGTTT+TGG - chr8_3:58513126-58513145 Msa1297910:CDS 30.0%
AACTGAGTCATTTCATTGAA+GGG + chr8_3:58513157-58513176 None:intergenic 30.0%
AAACTGAGTCATTTCATTGA+AGG + chr8_3:58513158-58513177 None:intergenic 30.0%
! CAATGAAATGACTCAGTTTT+TGG - chr8_3:58513159-58513178 Msa1297910:CDS 30.0%
ATATAGATTACAAAAGGAGG+AGG + chr8_3:58513233-58513252 None:intergenic 30.0%
! TCCTCCTTTTGTAATCTATA+TGG - chr8_3:58513232-58513251 Msa1297910:CDS 30.0%
ACCATATAGATTACAAAAGG+AGG + chr8_3:58513236-58513255 None:intergenic 30.0%
CACACCATATAGATTACAAA+AGG + chr8_3:58513239-58513258 None:intergenic 30.0%
! CTTTTGTAATCTATATGGTG+TGG - chr8_3:58513237-58513256 Msa1297910:CDS 30.0%
CCATTTCTATAGATAGATTG+AGG + chr8_3:58513341-58513360 None:intergenic 30.0%
CCTCAATCTATCTATAGAAA+TGG - chr8_3:58513338-58513357 Msa1297910:five_prime_UTR 30.0%
! TTTAGCTTCCTTAAAAGACA+TGG - chr8_3:58512406-58512425 Msa1297910:three_prime_UTR 30.0%
AGTATTATTGACATAACCCA+TGG + chr8_3:58512480-58512499 None:intergenic 30.0%
ATCTAGGTGAAGAAACATAA+AGG + chr8_3:58512514-58512533 None:intergenic 30.0%
! TGAATCATAAGGGTCTTTTA+AGG + chr8_3:58512680-58512699 None:intergenic 30.0%
GAATCTTTCTTCATCTATGA+AGG - chr8_3:58512834-58512853 Msa1297910:CDS 30.0%
AATTCTTCAAACAAGGTTCA+AGG - chr8_3:58512886-58512905 Msa1297910:CDS 30.0%
CAAGATTATTCCTTTCGTAA+AGG - chr8_3:58512910-58512929 Msa1297910:intron 30.0%
!! AAAAGTGTGTTTCCTTGTTT+TGG - chr8_3:58513126-58513145 Msa1297910:CDS 30.0%
AACTGAGTCATTTCATTGAA+GGG + chr8_3:58513157-58513176 None:intergenic 30.0%
AAACTGAGTCATTTCATTGA+AGG + chr8_3:58513158-58513177 None:intergenic 30.0%
! CAATGAAATGACTCAGTTTT+TGG - chr8_3:58513159-58513178 Msa1297910:CDS 30.0%
ATATAGATTACAAAAGGAGG+AGG + chr8_3:58513233-58513252 None:intergenic 30.0%
! TCCTCCTTTTGTAATCTATA+TGG - chr8_3:58513232-58513251 Msa1297910:CDS 30.0%
ACCATATAGATTACAAAAGG+AGG + chr8_3:58513236-58513255 None:intergenic 30.0%
CACACCATATAGATTACAAA+AGG + chr8_3:58513239-58513258 None:intergenic 30.0%
! CTTTTGTAATCTATATGGTG+TGG - chr8_3:58513237-58513256 Msa1297910:CDS 30.0%
CCATTTCTATAGATAGATTG+AGG + chr8_3:58513341-58513360 None:intergenic 30.0%
CCTCAATCTATCTATAGAAA+TGG - chr8_3:58513338-58513357 Msa1297910:five_prime_UTR 30.0%
!! TGGTCTTGTTCTAAGTAACA+AGG + chr8_3:58512383-58512402 None:intergenic 35.0%
! TGTTACTTAGAACAAGACCA+CGG - chr8_3:58512383-58512402 Msa1297910:three_prime_UTR 35.0%
! TGCAACATCCATGTCTTTTA+AGG + chr8_3:58512417-58512436 None:intergenic 35.0%
TATGTTTCTTCACCTAGATC+TGG - chr8_3:58512515-58512534 Msa1297910:three_prime_UTR 35.0%
TCATAGAATCTTCCAGATCT+AGG + chr8_3:58512530-58512549 None:intergenic 35.0%
TACAAAGAGAACAAGCTTCA+AGG + chr8_3:58512583-58512602 None:intergenic 35.0%
TCTCTTTGTAACAAACCACT+TGG - chr8_3:58512593-58512612 Msa1297910:three_prime_UTR 35.0%
ATATCTTTATTGCCACCAAG+TGG + chr8_3:58512611-58512630 None:intergenic 35.0%
CTACACTCTTCACTACAAAA+AGG + chr8_3:58512772-58512791 None:intergenic 35.0%
!! TATGAAGGCTTTGAGGAATA+AGG - chr8_3:58512849-58512868 Msa1297910:CDS 35.0%
!! TAGTTTTGCTTGAAGGGAAA+AGG - chr8_3:58512949-58512968 Msa1297910:intron 35.0%
GAACAAGAGTCAATAGAGAA+GGG - chr8_3:58513062-58513081 Msa1297910:CDS 35.0%
GCAGAGAATGTAACTGTAAA+TGG - chr8_3:58513091-58513110 Msa1297910:CDS 35.0%
GAAATTTGTAGAGAGAGTGA+AGG + chr8_3:58512298-58512317 None:intergenic 35.0%
!! TGGTCTTGTTCTAAGTAACA+AGG + chr8_3:58512383-58512402 None:intergenic 35.0%
! TGTTACTTAGAACAAGACCA+CGG - chr8_3:58512383-58512402 Msa1297910:three_prime_UTR 35.0%
! TGCAACATCCATGTCTTTTA+AGG + chr8_3:58512417-58512436 None:intergenic 35.0%
TATGTTTCTTCACCTAGATC+TGG - chr8_3:58512515-58512534 Msa1297910:three_prime_UTR 35.0%
TCATAGAATCTTCCAGATCT+AGG + chr8_3:58512530-58512549 None:intergenic 35.0%
TACAAAGAGAACAAGCTTCA+AGG + chr8_3:58512583-58512602 None:intergenic 35.0%
TCTCTTTGTAACAAACCACT+TGG - chr8_3:58512593-58512612 Msa1297910:three_prime_UTR 35.0%
ATATCTTTATTGCCACCAAG+TGG + chr8_3:58512611-58512630 None:intergenic 35.0%
CTACACTCTTCACTACAAAA+AGG + chr8_3:58512772-58512791 None:intergenic 35.0%
!! TATGAAGGCTTTGAGGAATA+AGG - chr8_3:58512849-58512868 Msa1297910:CDS 35.0%
!! TAGTTTTGCTTGAAGGGAAA+AGG - chr8_3:58512949-58512968 Msa1297910:intron 35.0%
GAACAAGAGTCAATAGAGAA+GGG - chr8_3:58513062-58513081 Msa1297910:CDS 35.0%
GCAGAGAATGTAACTGTAAA+TGG - chr8_3:58513091-58513110 Msa1297910:CDS 35.0%
!!! AGGGGTTTTGGTTTTGTTTG+AGG + chr8_3:58512325-58512344 None:intergenic 40.0%
!! CTTTTAAGGAAGCTAAACCG+TGG + chr8_3:58512403-58512422 None:intergenic 40.0%
ATGGATGTTGCAAGTTATCG+TGG - chr8_3:58512425-58512444 Msa1297910:three_prime_UTR 40.0%
AGAACAAGCTTCAAGGAAGT+GGG + chr8_3:58512576-58512595 None:intergenic 40.0%
CTTTGTAACAAACCACTTGG+TGG - chr8_3:58512596-58512615 Msa1297910:three_prime_UTR 40.0%
CTTCATCTATGAAGGCTTTG+AGG - chr8_3:58512842-58512861 Msa1297910:CDS 40.0%
AATAGCTGTCCCTTTACGAA+AGG + chr8_3:58512923-58512942 None:intergenic 40.0%
!! TGCAGCATAGTTTTGCTTGA+AGG - chr8_3:58512942-58512961 Msa1297910:intron 40.0%
!! GCAGCATAGTTTTGCTTGAA+GGG - chr8_3:58512943-58512962 Msa1297910:intron 40.0%
CGAACAAGAGTCAATAGAGA+AGG - chr8_3:58513061-58513080 Msa1297910:CDS 40.0%
TGAAGGGATCTTCCAAAACA+AGG + chr8_3:58513141-58513160 None:intergenic 40.0%
!!! AGGGGTTTTGGTTTTGTTTG+AGG + chr8_3:58512325-58512344 None:intergenic 40.0%
!! CTTTTAAGGAAGCTAAACCG+TGG + chr8_3:58512403-58512422 None:intergenic 40.0%
ATGGATGTTGCAAGTTATCG+TGG - chr8_3:58512425-58512444 Msa1297910:three_prime_UTR 40.0%
AGAACAAGCTTCAAGGAAGT+GGG + chr8_3:58512576-58512595 None:intergenic 40.0%
CTTTGTAACAAACCACTTGG+TGG - chr8_3:58512596-58512615 Msa1297910:three_prime_UTR 40.0%
CTTCATCTATGAAGGCTTTG+AGG - chr8_3:58512842-58512861 Msa1297910:CDS 40.0%
AATAGCTGTCCCTTTACGAA+AGG + chr8_3:58512923-58512942 None:intergenic 40.0%
!! TGCAGCATAGTTTTGCTTGA+AGG - chr8_3:58512942-58512961 Msa1297910:intron 40.0%
!! GCAGCATAGTTTTGCTTGAA+GGG - chr8_3:58512943-58512962 Msa1297910:intron 40.0%
CGAACAAGAGTCAATAGAGA+AGG - chr8_3:58513061-58513080 Msa1297910:CDS 40.0%
TGAAGGGATCTTCCAAAACA+AGG + chr8_3:58513141-58513160 None:intergenic 40.0%
GAACAAGCTTCAAGGAAGTG+GGG + chr8_3:58512575-58512594 None:intergenic 45.0%
GAGAACAAGCTTCAAGGAAG+TGG + chr8_3:58512577-58512596 None:intergenic 45.0%
GTGGTTGTGTTGTGCTCATA+TGG - chr8_3:58513256-58513275 Msa1297910:CDS 45.0%
GAACAAGCTTCAAGGAAGTG+GGG + chr8_3:58512575-58512594 None:intergenic 45.0%
GAGAACAAGCTTCAAGGAAG+TGG + chr8_3:58512577-58512596 None:intergenic 45.0%
GTGGTTGTGTTGTGCTCATA+TGG - chr8_3:58513256-58513275 Msa1297910:CDS 45.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 58512296 58513377 58512296 ID=Msa1297910;Name=Msa1297910
chr8_3 mRNA 58512296 58513377 58512296 ID=Msa1297910-mRNA-1;Parent=Msa1297910;Name=Msa1297910-mRNA-1;_AED=0.01;_eAED=0.01;_QI=66|1|1|1|1|1|2|426|157
chr8_3 exon 58512296 58512914 58512296 ID=Msa1297910-mRNA-1:exon:16795;Parent=Msa1297910-mRNA-1
chr8_3 exon 58513031 58513377 58513031 ID=Msa1297910-mRNA-1:exon:16794;Parent=Msa1297910-mRNA-1
chr8_3 five_prime_UTR 58513312 58513377 58513312 ID=Msa1297910-mRNA-1:five_prime_utr;Parent=Msa1297910-mRNA-1
chr8_3 CDS 58513031 58513311 58513031 ID=Msa1297910-mRNA-1:cds;Parent=Msa1297910-mRNA-1
chr8_3 CDS 58512722 58512914 58512722 ID=Msa1297910-mRNA-1:cds;Parent=Msa1297910-mRNA-1
chr8_3 three_prime_UTR 58512296 58512721 58512296 ID=Msa1297910-mRNA-1:three_prime_utr;Parent=Msa1297910-mRNA-1
Gene Sequence

>Msa1297910

ATGGACTCATCAATAAAACCTTGTTACTTAGAACAAGACCACGGTTTAGCTTCCTTAAAAGACATGGATGTTGCAAGTTATCGTGGCAATAGTTTTGTTACAAAATCTATGATAACCATGGGTTATGTCAATAATACTAGTTTCAAGAACCTTTATGTTTCTTCACCTAGATCTGGAAGATTCTATGATGCTAGATTTGAAGATCATCAACCCCACTTCCTTGAAGCTTGTTCTCTTTGTAACAAACCACTTGGTGGCAATAAAGATATCTTCATGTATAGGGGTGACACACCTTTTTGTAGTGAAGAGTGTAGACAAGAGCAAATAGAGATAGATGAATTGAAAGAAAAAAATATGAATCTTTCTTCATCTATGAAGGCTTTGAGGAATAAGGAGCATAGAAAATCTAATTCTTCAAACAAGGTTCAAGGACAAGATTATTCCTTTCGTAAAGGGACAGCTATTGCAGCATAG
Protein sequence

>Msa1297910

MDSSIKPCYLEQDHGLASLKDMDVASYRGNSFVTKSMITMGYVNNTSFKNLYVSSPRSGRFYDARFEDHQPHFLEACSLCNKPLGGNKDIFMYRGDTPFCSEECRQEQIEIDELKEKNMNLSSSMKALRNKEHRKSNSSNKVQGQDYSFRKGTAIAA*