Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1210690 | sp|Q86A88|DYL_DICDI | 50.602 | 83 | 38 | 2 | 202 | 284 | 12 | 91 | 8.20e-21 | 87.8 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1210690 | A0A072V1C9 | 93.160 | 307 | 3 | 3 | 1 | 289 | 1 | 307 | 0.0 | 574 |
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0679550 | Msa1210690 | 0.800885 | 1.168129e-48 | -8.615850e-47 |
Msa0174850 | Msa1210690 | 0.810880 | 9.250325e-51 | -8.615850e-47 |
Msa1118110 | Msa1210690 | 0.805146 | 1.537037e-49 | -8.615850e-47 |
Msa1210690 | Msa1235400 | 0.808881 | 2.490396e-50 | -8.615850e-47 |
Msa1210690 | Msa1259530 | 0.836816 | 7.496607e-57 | -8.615850e-47 |
Msa1210690 | Msa1360220 | 0.927852 | 6.588516e-92 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1210690 | MtrunA17_Chr4g0059791 | 93.160 | 307 | 3 | 3 | 1 | 289 | 1 | 307 | 0.0 | 574 |
Msa1210690 | MtrunA17_Chr4g0063491 | 65.934 | 91 | 30 | 1 | 198 | 288 | 154 | 243 | 2.28e-39 | 138 |
Msa1210690 | MtrunA17_Chr8g0391451 | 62.626 | 99 | 34 | 2 | 193 | 289 | 49 | 146 | 1.87e-37 | 130 |
Msa1210690 | MtrunA17_Chr4g0067531 | 51.807 | 83 | 37 | 2 | 202 | 284 | 51 | 130 | 4.75e-21 | 86.7 |
Msa1210690 | MtrunA17_Chr2g0331651 | 46.067 | 89 | 46 | 2 | 195 | 282 | 2 | 89 | 2.36e-20 | 83.6 |
Msa1210690 | MtrunA17_Chr8g0360861 | 50.633 | 79 | 38 | 1 | 204 | 282 | 12 | 89 | 4.45e-18 | 78.2 |
Msa1210690 | MtrunA17_Chr6g0485891 | 44.444 | 81 | 44 | 1 | 204 | 284 | 46 | 125 | 6.08e-16 | 72.8 |
Msa1210690 | MtrunA17_Chr1g0160981 | 45.946 | 74 | 38 | 1 | 196 | 267 | 51 | 124 | 1.40e-13 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1210690 | AT5G20110.1 | 67.033 | 91 | 29 | 1 | 198 | 288 | 117 | 206 | 1.92e-39 | 137 |
Msa1210690 | AT1G23220.1 | 53.763 | 93 | 41 | 2 | 198 | 289 | 36 | 127 | 2.59e-27 | 103 |
Msa1210690 | AT1G52245.1 | 46.154 | 91 | 47 | 2 | 195 | 284 | 2 | 91 | 4.97e-19 | 80.5 |
Msa1210690 | AT4G15930.1 | 47.727 | 88 | 41 | 3 | 198 | 284 | 40 | 123 | 5.05e-19 | 81.3 |
Msa1210690 | AT3G16120.2 | 47.126 | 87 | 45 | 1 | 198 | 284 | 6 | 91 | 6.89e-19 | 80.1 |
Msa1210690 | AT3G16120.1 | 47.126 | 87 | 45 | 1 | 198 | 284 | 6 | 91 | 6.89e-19 | 80.1 |
Msa1210690 | AT4G27360.1 | 46.591 | 88 | 46 | 1 | 198 | 285 | 6 | 92 | 2.82e-16 | 73.6 |
Find 67 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTGAGGTGGTTTCTCTTTA+AGG | 0.077615 | 8_1:-69869807 | None:intergenic |
GGTGATTTCTTTGCAATTAA+TGG | 0.142399 | 8_1:+69870133 | Msa1210690:CDS |
ATCAAATCTTGGTTTGGTTT+TGG | 0.235547 | 8_1:-69869547 | None:intergenic |
TGTATTGTGGGGACTAGTTT+TGG | 0.238004 | 8_1:+69870940 | Msa1210690:CDS |
GTACAGCAGTCTTGAATATA+AGG | 0.239212 | 8_1:-69871026 | None:intergenic |
GGAGAGAGTTTCTGTTTCTA+TGG | 0.258173 | 8_1:+69870060 | Msa1210690:intron |
TTGAGGTGGTTTCTCTTTAA+GGG | 0.259606 | 8_1:-69869806 | None:intergenic |
TGTGGGTCAATGATTGATTT+AGG | 0.289700 | 8_1:+69870112 | Msa1210690:CDS |
GAGGGATAATGCTAGGGTTT+TGG | 0.302500 | 8_1:-69870251 | None:intergenic |
ATTGGAAAAGTGGAAACTTC+AGG | 0.346164 | 8_1:+69869843 | Msa1210690:CDS |
TGTTTGGTGGGTGTTGTTGT+TGG | 0.366216 | 8_1:-69869722 | None:intergenic |
CAAACGTGAGTCAACATGTT+TGG | 0.366632 | 8_1:-69869653 | None:intergenic |
GTTTGGTGGGTGTTGTTGTT+GGG | 0.396439 | 8_1:-69869721 | None:intergenic |
GAAATATTGCAGGAATTTGA+TGG | 0.396694 | 8_1:+69870895 | Msa1210690:intron |
AAAGGTGGTTGAGGATGTTA+AGG | 0.409778 | 8_1:+69869885 | Msa1210690:CDS |
CAGGAATTTGATGGGGTGTA+TGG | 0.421928 | 8_1:+69870904 | Msa1210690:intron |
GCTTGAATCAAATCTTGGTT+TGG | 0.433215 | 8_1:-69869553 | None:intergenic |
TAGTAGCTTGAATCAAATCT+TGG | 0.435025 | 8_1:-69869558 | None:intergenic |
GTTGTTGAAGAATGAGAAAA+AGG | 0.446134 | 8_1:+69869867 | Msa1210690:CDS |
TTTGGTTTGAGAATGTTGTT+TGG | 0.446853 | 8_1:-69869635 | None:intergenic |
CCGGCGAAACACGGCACCAC+CGG | 0.446993 | 8_1:+69869432 | Msa1210690:CDS |
TTGGAAAAGTGGAAACTTCA+GGG | 0.459465 | 8_1:+69869844 | Msa1210690:CDS |
AGGATTTCTATATTTCTCAA+TGG | 0.472685 | 8_1:+69870987 | Msa1210690:CDS |
CCTTCTTGAGGGATAATGCT+AGG | 0.479039 | 8_1:-69870258 | None:intergenic |
TTTGTGACCCATTCTGTTGG+AGG | 0.480594 | 8_1:+69870967 | Msa1210690:CDS |
TGGTGCCGTGTTTCGCCGGC+GGG | 0.480858 | 8_1:-69869428 | None:intergenic |
ACAGCATGGATCTGCATAAA+CGG | 0.483580 | 8_1:-69870184 | None:intergenic |
TATGAATTATACCTTCTTGA+GGG | 0.489208 | 8_1:-69870269 | None:intergenic |
TTTGGTTGCTTAGCTAAAGC+AGG | 0.490079 | 8_1:-69869469 | None:intergenic |
TCATTTGTGACCCATTCTGT+TGG | 0.494391 | 8_1:+69870964 | Msa1210690:CDS |
CTTCTTGAGGGATAATGCTA+GGG | 0.494928 | 8_1:-69870257 | None:intergenic |
CCGGTGGTGCCGTGTTTCGC+CGG | 0.500458 | 8_1:-69869432 | None:intergenic |
CCAGCATGGCACTGTATTGT+GGG | 0.504817 | 8_1:+69870928 | Msa1210690:CDS |
TAGAAATCCTCCAACAGAAT+GGG | 0.505407 | 8_1:-69870974 | None:intergenic |
GAGAGAGTTTCTGTTTCTAT+GGG | 0.506756 | 8_1:+69870061 | Msa1210690:CDS |
TGCTTAGCTAAAGCAGGAGG+TGG | 0.509007 | 8_1:-69869463 | None:intergenic |
CCTAAGTTAAGACTTTGAAA+AGG | 0.512023 | 8_1:-69869601 | None:intergenic |
CTAGTTCAGAATTGGAAAAG+TGG | 0.512540 | 8_1:+69869833 | Msa1210690:CDS |
CATGTTGACTCACGTTTGCA+AGG | 0.516215 | 8_1:+69869658 | Msa1210690:CDS |
TGTTTCGCCGGCGGGAAGAA+CGG | 0.519846 | 8_1:-69869420 | None:intergenic |
AAATATTGCAGGAATTTGAT+GGG | 0.521597 | 8_1:+69870896 | Msa1210690:intron |
GGTAGAAGAAAATCGTTATG+TGG | 0.525728 | 8_1:+69870094 | Msa1210690:CDS |
CCCACAATACAGTGCCATGC+TGG | 0.538117 | 8_1:-69870928 | None:intergenic |
ATATGAATTATACCTTCTTG+AGG | 0.545883 | 8_1:-69870270 | None:intergenic |
GTTTCTATGGGTCAAAGTGG+TGG | 0.547379 | 8_1:+69870073 | Msa1210690:CDS |
ATAGAAATCCTCCAACAGAA+TGG | 0.547634 | 8_1:-69870975 | None:intergenic |
AAATATAGCTGAGGTTGTCA+TGG | 0.552151 | 8_1:-69869686 | None:intergenic |
GCAGGAGGTGGATTTGTCTC+CGG | 0.556923 | 8_1:-69869451 | None:intergenic |
TTCTTCCCGCCGGCGAAACA+CGG | 0.557264 | 8_1:+69869423 | Msa1210690:CDS |
GTGGTGCCGTGTTTCGCCGG+CGG | 0.566812 | 8_1:-69869429 | None:intergenic |
TTCTAGCACAATCAACAGCA+TGG | 0.575374 | 8_1:-69870198 | None:intergenic |
ACCAGCATGGCACTGTATTG+TGG | 0.577524 | 8_1:+69870927 | Msa1210690:CDS |
CCTAGCATTATCCCTCAAGA+AGG | 0.579726 | 8_1:+69870258 | Msa1210690:CDS |
TGAAGGTGATGATGAGAAGA+TGG | 0.583761 | 8_1:-69869512 | None:intergenic |
GTAGAAGAAAATCGTTATGT+GGG | 0.594942 | 8_1:+69870095 | Msa1210690:CDS |
TCTGTTTCTATGGGTCAAAG+TGG | 0.611585 | 8_1:+69870070 | Msa1210690:CDS |
TGATGAATCAAATATAGCTG+AGG | 0.614815 | 8_1:-69869695 | None:intergenic |
GGAGGTGGATTTGTCTCCGG+TGG | 0.623941 | 8_1:-69869448 | None:intergenic |
TGGCACACCGTTCTTCCCGC+CGG | 0.632791 | 8_1:+69869413 | Msa1210690:CDS |
GGTTGCTTAGCTAAAGCAGG+AGG | 0.641795 | 8_1:-69869466 | None:intergenic |
CAGCATGGCACTGTATTGTG+GGG | 0.649093 | 8_1:+69870929 | Msa1210690:CDS |
TGGAAAAGTGGAAACTTCAG+GGG | 0.656471 | 8_1:+69869845 | Msa1210690:CDS |
TTTGGATAGTGAGAAGGTGA+AGG | 0.666862 | 8_1:-69869529 | None:intergenic |
AGGTGATGATGAGAAGATGG+TGG | 0.684245 | 8_1:-69869509 | None:intergenic |
AATATTGCAGGAATTTGATG+GGG | 0.687792 | 8_1:+69870897 | Msa1210690:intron |
GCATGGATCTGCATAAACGG+TGG | 0.717762 | 8_1:-69870181 | None:intergenic |
ATGGGGTGTATGGACCAGCA+TGG | 0.734479 | 8_1:+69870914 | Msa1210690:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AGTTTTGAATGAATTGATTA+TGG | + | chr8_1:69870358-69870377 | Msa1210690:intron | 20.0% |
!!! | ATGTACACAAAATTTGATTT+GGG | - | chr8_1:69870586-69870605 | None:intergenic | 20.0% |
!!! | TCAAATCATTTTGCTAAATT+TGG | - | chr8_1:69870696-69870715 | None:intergenic | 20.0% |
!!! | TTATAATGATTTTCTTTAGG+AGG | - | chr8_1:69870767-69870786 | None:intergenic | 20.0% |
!!! | CGTTTATAATGATTTTCTTT+AGG | - | chr8_1:69870770-69870789 | None:intergenic | 20.0% |
!! | AAAGAAAATCATTATAAACG+TGG | + | chr8_1:69870770-69870789 | Msa1210690:intron | 20.0% |
!!! | TTTTGCATTAGGAATAATTT+AGG | + | chr8_1:69870798-69870817 | Msa1210690:intron | 20.0% |
!! | TTTGCATTAGGAATAATTTA+GGG | + | chr8_1:69870799-69870818 | Msa1210690:intron | 20.0% |
!!! | TGAATATTTTAGTGAATGAT+TGG | + | chr8_1:69870848-69870867 | Msa1210690:intron | 20.0% |
!!! | AGTTTTGAATGAATTGATTA+TGG | + | chr8_1:69870358-69870377 | Msa1210690:intron | 20.0% |
!!! | ATGTACACAAAATTTGATTT+GGG | - | chr8_1:69870586-69870605 | None:intergenic | 20.0% |
!!! | TCAAATCATTTTGCTAAATT+TGG | - | chr8_1:69870696-69870715 | None:intergenic | 20.0% |
!!! | TTATAATGATTTTCTTTAGG+AGG | - | chr8_1:69870767-69870786 | None:intergenic | 20.0% |
!!! | CGTTTATAATGATTTTCTTT+AGG | - | chr8_1:69870770-69870789 | None:intergenic | 20.0% |
!! | AAAGAAAATCATTATAAACG+TGG | + | chr8_1:69870770-69870789 | Msa1210690:intron | 20.0% |
!!! | TTTTGCATTAGGAATAATTT+AGG | + | chr8_1:69870798-69870817 | Msa1210690:intron | 20.0% |
!! | TTTGCATTAGGAATAATTTA+GGG | + | chr8_1:69870799-69870818 | Msa1210690:intron | 20.0% |
!!! | TGAATATTTTAGTGAATGAT+TGG | + | chr8_1:69870848-69870867 | Msa1210690:intron | 20.0% |
!! | TTAGTACTGTGATTTTTGTT+TGG | - | chr8_1:69869741-69869760 | None:intergenic | 25.0% |
!!! | ACACTATCTTTTTCATGATT+TGG | - | chr8_1:69869766-69869785 | None:intergenic | 25.0% |
!!! | TAGAAAAGCTTTTGATAGTA+TGG | + | chr8_1:69870216-69870235 | Msa1210690:CDS | 25.0% |
! | TATGAATTATACCTTCTTGA+GGG | - | chr8_1:69870272-69870291 | None:intergenic | 25.0% |
! | ATATGAATTATACCTTCTTG+AGG | - | chr8_1:69870273-69870292 | None:intergenic | 25.0% |
! | TCAATTGAACTAGGTTTAAA+TGG | - | chr8_1:69870403-69870422 | None:intergenic | 25.0% |
! | CATGTACACAAAATTTGATT+TGG | - | chr8_1:69870587-69870606 | None:intergenic | 25.0% |
!!! | ACTTACATTCAAGTCATTTT+GGG | - | chr8_1:69870610-69870629 | None:intergenic | 25.0% |
!! | TCATTTTGCTAAATTTGGAT+CGG | - | chr8_1:69870691-69870710 | None:intergenic | 25.0% |
! | AAATATTGCAGGAATTTGAT+GGG | + | chr8_1:69870896-69870915 | Msa1210690:intron | 25.0% |
! | AGGATTTCTATATTTCTCAA+TGG | + | chr8_1:69870987-69871006 | Msa1210690:CDS | 25.0% |
!! | TTAGTACTGTGATTTTTGTT+TGG | - | chr8_1:69869741-69869760 | None:intergenic | 25.0% |
!!! | ACACTATCTTTTTCATGATT+TGG | - | chr8_1:69869766-69869785 | None:intergenic | 25.0% |
!!! | TAGAAAAGCTTTTGATAGTA+TGG | + | chr8_1:69870216-69870235 | Msa1210690:CDS | 25.0% |
! | TATGAATTATACCTTCTTGA+GGG | - | chr8_1:69870272-69870291 | None:intergenic | 25.0% |
! | ATATGAATTATACCTTCTTG+AGG | - | chr8_1:69870273-69870292 | None:intergenic | 25.0% |
! | TCAATTGAACTAGGTTTAAA+TGG | - | chr8_1:69870403-69870422 | None:intergenic | 25.0% |
! | CATGTACACAAAATTTGATT+TGG | - | chr8_1:69870587-69870606 | None:intergenic | 25.0% |
!!! | ACTTACATTCAAGTCATTTT+GGG | - | chr8_1:69870610-69870629 | None:intergenic | 25.0% |
!! | TCATTTTGCTAAATTTGGAT+CGG | - | chr8_1:69870691-69870710 | None:intergenic | 25.0% |
! | AAATATTGCAGGAATTTGAT+GGG | + | chr8_1:69870896-69870915 | Msa1210690:intron | 25.0% |
! | AGGATTTCTATATTTCTCAA+TGG | + | chr8_1:69870987-69871006 | Msa1210690:CDS | 25.0% |
!!! | ATCAAATCTTGGTTTGGTTT+TGG | - | chr8_1:69869550-69869569 | None:intergenic | 30.0% |
TAGTAGCTTGAATCAAATCT+TGG | - | chr8_1:69869561-69869580 | None:intergenic | 30.0% | |
! | CCTAAGTTAAGACTTTGAAA+AGG | - | chr8_1:69869604-69869623 | None:intergenic | 30.0% |
! | CCTTTTCAAAGTCTTAACTT+AGG | + | chr8_1:69869601-69869620 | Msa1210690:CDS | 30.0% |
!! | TTTGGTTTGAGAATGTTGTT+TGG | - | chr8_1:69869638-69869657 | None:intergenic | 30.0% |
TGATGAATCAAATATAGCTG+AGG | - | chr8_1:69869698-69869717 | None:intergenic | 30.0% | |
!! | TACTGTGATTTTTGTTTGGT+GGG | - | chr8_1:69869737-69869756 | None:intergenic | 30.0% |
!!! | GTGTTTTTTTGCATTCTAAG+AGG | + | chr8_1:69869782-69869801 | Msa1210690:CDS | 30.0% |
! | AATTCTGAACTAGGTTTTTG+AGG | - | chr8_1:69869826-69869845 | None:intergenic | 30.0% |
TCAAAAACCTAGTTCAGAAT+TGG | + | chr8_1:69869825-69869844 | Msa1210690:CDS | 30.0% | |
GTTGTTGAAGAATGAGAAAA+AGG | + | chr8_1:69869867-69869886 | Msa1210690:CDS | 30.0% | |
GTAGAAGAAAATCGTTATGT+GGG | + | chr8_1:69870095-69870114 | Msa1210690:CDS | 30.0% | |
GGTGATTTCTTTGCAATTAA+TGG | + | chr8_1:69870133-69870152 | Msa1210690:CDS | 30.0% | |
TGCAATTAATGGAGCAAAAA+TGG | + | chr8_1:69870144-69870163 | Msa1210690:CDS | 30.0% | |
! | GTTAGACTTGACACTTTTAT+CGG | + | chr8_1:69870436-69870455 | Msa1210690:intron | 30.0% |
! | TTAGACTTGACACTTTTATC+GGG | + | chr8_1:69870437-69870456 | Msa1210690:intron | 30.0% |
! | CACTTACATTCAAGTCATTT+TGG | - | chr8_1:69870611-69870630 | None:intergenic | 30.0% |
GTGTATGTTTGAATTTAGTG+TGG | + | chr8_1:69870628-69870647 | Msa1210690:intron | 30.0% | |
! | ATTTTGCTAAATTTGGATCG+GGG | - | chr8_1:69870689-69870708 | None:intergenic | 30.0% |
! | CATTTTGCTAAATTTGGATC+GGG | - | chr8_1:69870690-69870709 | None:intergenic | 30.0% |
! | GAATGATTGGTCAATGAATT+CGG | + | chr8_1:69870861-69870880 | Msa1210690:intron | 30.0% |
GAAATATTGCAGGAATTTGA+TGG | + | chr8_1:69870895-69870914 | Msa1210690:intron | 30.0% | |
AATATTGCAGGAATTTGATG+GGG | + | chr8_1:69870897-69870916 | Msa1210690:intron | 30.0% | |
!!! | ATCAAATCTTGGTTTGGTTT+TGG | - | chr8_1:69869550-69869569 | None:intergenic | 30.0% |
TAGTAGCTTGAATCAAATCT+TGG | - | chr8_1:69869561-69869580 | None:intergenic | 30.0% | |
! | CCTAAGTTAAGACTTTGAAA+AGG | - | chr8_1:69869604-69869623 | None:intergenic | 30.0% |
! | CCTTTTCAAAGTCTTAACTT+AGG | + | chr8_1:69869601-69869620 | Msa1210690:CDS | 30.0% |
!! | TTTGGTTTGAGAATGTTGTT+TGG | - | chr8_1:69869638-69869657 | None:intergenic | 30.0% |
TGATGAATCAAATATAGCTG+AGG | - | chr8_1:69869698-69869717 | None:intergenic | 30.0% | |
!! | TACTGTGATTTTTGTTTGGT+GGG | - | chr8_1:69869737-69869756 | None:intergenic | 30.0% |
!!! | GTGTTTTTTTGCATTCTAAG+AGG | + | chr8_1:69869782-69869801 | Msa1210690:CDS | 30.0% |
! | AATTCTGAACTAGGTTTTTG+AGG | - | chr8_1:69869826-69869845 | None:intergenic | 30.0% |
TCAAAAACCTAGTTCAGAAT+TGG | + | chr8_1:69869825-69869844 | Msa1210690:CDS | 30.0% | |
GTTGTTGAAGAATGAGAAAA+AGG | + | chr8_1:69869867-69869886 | Msa1210690:CDS | 30.0% | |
GTAGAAGAAAATCGTTATGT+GGG | + | chr8_1:69870095-69870114 | Msa1210690:CDS | 30.0% | |
GGTGATTTCTTTGCAATTAA+TGG | + | chr8_1:69870133-69870152 | Msa1210690:CDS | 30.0% | |
TGCAATTAATGGAGCAAAAA+TGG | + | chr8_1:69870144-69870163 | Msa1210690:CDS | 30.0% | |
! | GTTAGACTTGACACTTTTAT+CGG | + | chr8_1:69870436-69870455 | Msa1210690:intron | 30.0% |
! | TTAGACTTGACACTTTTATC+GGG | + | chr8_1:69870437-69870456 | Msa1210690:intron | 30.0% |
! | CACTTACATTCAAGTCATTT+TGG | - | chr8_1:69870611-69870630 | None:intergenic | 30.0% |
GTGTATGTTTGAATTTAGTG+TGG | + | chr8_1:69870628-69870647 | Msa1210690:intron | 30.0% | |
! | ATTTTGCTAAATTTGGATCG+GGG | - | chr8_1:69870689-69870708 | None:intergenic | 30.0% |
! | CATTTTGCTAAATTTGGATC+GGG | - | chr8_1:69870690-69870709 | None:intergenic | 30.0% |
! | GAATGATTGGTCAATGAATT+CGG | + | chr8_1:69870861-69870880 | Msa1210690:intron | 30.0% |
GAAATATTGCAGGAATTTGA+TGG | + | chr8_1:69870895-69870914 | Msa1210690:intron | 30.0% | |
AATATTGCAGGAATTTGATG+GGG | + | chr8_1:69870897-69870916 | Msa1210690:intron | 30.0% | |
!!! | TTTGGTTTTGGATAGTGAGA+AGG | - | chr8_1:69869538-69869557 | None:intergenic | 35.0% |
GCTTGAATCAAATCTTGGTT+TGG | - | chr8_1:69869556-69869575 | None:intergenic | 35.0% | |
AAATATAGCTGAGGTTGTCA+TGG | - | chr8_1:69869689-69869708 | None:intergenic | 35.0% | |
!! | GTACTGTGATTTTTGTTTGG+TGG | - | chr8_1:69869738-69869757 | None:intergenic | 35.0% |
TTGAGGTGGTTTCTCTTTAA+GGG | - | chr8_1:69869809-69869828 | None:intergenic | 35.0% | |
! | TTTGAGGTGGTTTCTCTTTA+AGG | - | chr8_1:69869810-69869829 | None:intergenic | 35.0% |
! | CACTTTTCCAATTCTGAACT+AGG | - | chr8_1:69869835-69869854 | None:intergenic | 35.0% |
CTAGTTCAGAATTGGAAAAG+TGG | + | chr8_1:69869833-69869852 | Msa1210690:CDS | 35.0% | |
ATTGGAAAAGTGGAAACTTC+AGG | + | chr8_1:69869843-69869862 | Msa1210690:CDS | 35.0% | |
TTGGAAAAGTGGAAACTTCA+GGG | + | chr8_1:69869844-69869863 | Msa1210690:CDS | 35.0% | |
GTTGAAGAATGAGAAAAAGG+TGG | + | chr8_1:69869870-69869889 | Msa1210690:CDS | 35.0% | |
GTAACTGTTGTGGAAAAAGA+AGG | + | chr8_1:69870025-69870044 | Msa1210690:intron | 35.0% | |
! | AAAAGAAGGTGGTGATGTTA+AGG | + | chr8_1:69870039-69870058 | Msa1210690:intron | 35.0% |
!! | GAGAGAGTTTCTGTTTCTAT+GGG | + | chr8_1:69870061-69870080 | Msa1210690:CDS | 35.0% |
GGTAGAAGAAAATCGTTATG+TGG | + | chr8_1:69870094-69870113 | Msa1210690:CDS | 35.0% | |
! | TGTGGGTCAATGATTGATTT+AGG | + | chr8_1:69870112-69870131 | Msa1210690:CDS | 35.0% |
CCTAGTTCAATTGACAATGT+CGG | + | chr8_1:69870409-69870428 | Msa1210690:intron | 35.0% | |
ATCTAAGGACCACTAAAACT+CGG | - | chr8_1:69870495-69870514 | None:intergenic | 35.0% | |
ACATACGCTAAAGTCATCTA+AGG | - | chr8_1:69870510-69870529 | None:intergenic | 35.0% | |
TATGTTGACGAGAGAATGAT+TGG | + | chr8_1:69870525-69870544 | Msa1210690:intron | 35.0% | |
!! | ACGTGGTTTACTTTTGCATT+AGG | + | chr8_1:69870787-69870806 | Msa1210690:intron | 35.0% |
TAGAAATCCTCCAACAGAAT+GGG | - | chr8_1:69870977-69870996 | None:intergenic | 35.0% | |
ATAGAAATCCTCCAACAGAA+TGG | - | chr8_1:69870978-69870997 | None:intergenic | 35.0% | |
GTACAGCAGTCTTGAATATA+AGG | - | chr8_1:69871029-69871048 | None:intergenic | 35.0% | |
!!! | TTTGGTTTTGGATAGTGAGA+AGG | - | chr8_1:69869538-69869557 | None:intergenic | 35.0% |
GCTTGAATCAAATCTTGGTT+TGG | - | chr8_1:69869556-69869575 | None:intergenic | 35.0% | |
AAATATAGCTGAGGTTGTCA+TGG | - | chr8_1:69869689-69869708 | None:intergenic | 35.0% | |
!! | GTACTGTGATTTTTGTTTGG+TGG | - | chr8_1:69869738-69869757 | None:intergenic | 35.0% |
TTGAGGTGGTTTCTCTTTAA+GGG | - | chr8_1:69869809-69869828 | None:intergenic | 35.0% | |
! | TTTGAGGTGGTTTCTCTTTA+AGG | - | chr8_1:69869810-69869829 | None:intergenic | 35.0% |
! | CACTTTTCCAATTCTGAACT+AGG | - | chr8_1:69869835-69869854 | None:intergenic | 35.0% |
CTAGTTCAGAATTGGAAAAG+TGG | + | chr8_1:69869833-69869852 | Msa1210690:CDS | 35.0% | |
ATTGGAAAAGTGGAAACTTC+AGG | + | chr8_1:69869843-69869862 | Msa1210690:CDS | 35.0% | |
TTGGAAAAGTGGAAACTTCA+GGG | + | chr8_1:69869844-69869863 | Msa1210690:CDS | 35.0% | |
GTTGAAGAATGAGAAAAAGG+TGG | + | chr8_1:69869870-69869889 | Msa1210690:CDS | 35.0% | |
GTAACTGTTGTGGAAAAAGA+AGG | + | chr8_1:69870025-69870044 | Msa1210690:intron | 35.0% | |
! | AAAAGAAGGTGGTGATGTTA+AGG | + | chr8_1:69870039-69870058 | Msa1210690:intron | 35.0% |
!! | GAGAGAGTTTCTGTTTCTAT+GGG | + | chr8_1:69870061-69870080 | Msa1210690:CDS | 35.0% |
GGTAGAAGAAAATCGTTATG+TGG | + | chr8_1:69870094-69870113 | Msa1210690:CDS | 35.0% | |
! | TGTGGGTCAATGATTGATTT+AGG | + | chr8_1:69870112-69870131 | Msa1210690:CDS | 35.0% |
CCTAGTTCAATTGACAATGT+CGG | + | chr8_1:69870409-69870428 | Msa1210690:intron | 35.0% | |
ATCTAAGGACCACTAAAACT+CGG | - | chr8_1:69870495-69870514 | None:intergenic | 35.0% | |
ACATACGCTAAAGTCATCTA+AGG | - | chr8_1:69870510-69870529 | None:intergenic | 35.0% | |
TATGTTGACGAGAGAATGAT+TGG | + | chr8_1:69870525-69870544 | Msa1210690:intron | 35.0% | |
!! | ACGTGGTTTACTTTTGCATT+AGG | + | chr8_1:69870787-69870806 | Msa1210690:intron | 35.0% |
TAGAAATCCTCCAACAGAAT+GGG | - | chr8_1:69870977-69870996 | None:intergenic | 35.0% | |
ATAGAAATCCTCCAACAGAA+TGG | - | chr8_1:69870978-69870997 | None:intergenic | 35.0% | |
GTACAGCAGTCTTGAATATA+AGG | - | chr8_1:69871029-69871048 | None:intergenic | 35.0% | |
TTTGGTTGCTTAGCTAAAGC+AGG | - | chr8_1:69869472-69869491 | None:intergenic | 40.0% | |
!!! | GTTTTTGTAGTGGTGGGTTT+TGG | - | chr8_1:69869490-69869509 | None:intergenic | 40.0% |
! | ATGGTGGTTTTTGTAGTGGT+GGG | - | chr8_1:69869496-69869515 | None:intergenic | 40.0% |
!! | GAAGATGGTGGTTTTTGTAG+TGG | - | chr8_1:69869500-69869519 | None:intergenic | 40.0% |
! | TGAAGGTGATGATGAGAAGA+TGG | - | chr8_1:69869515-69869534 | None:intergenic | 40.0% |
TTTGGATAGTGAGAAGGTGA+AGG | - | chr8_1:69869532-69869551 | None:intergenic | 40.0% | |
CAAACGTGAGTCAACATGTT+TGG | - | chr8_1:69869656-69869675 | None:intergenic | 40.0% | |
!! | TCTGAACTAGGTTTTTGAGG+TGG | - | chr8_1:69869823-69869842 | None:intergenic | 40.0% |
TGGAAAAGTGGAAACTTCAG+GGG | + | chr8_1:69869845-69869864 | Msa1210690:CDS | 40.0% | |
GAATGAGAAAAAGGTGGTTG+AGG | + | chr8_1:69869876-69869895 | Msa1210690:CDS | 40.0% | |
AAAGGTGGTTGAGGATGTTA+AGG | + | chr8_1:69869885-69869904 | Msa1210690:CDS | 40.0% | |
ACTGTTGTGGAAAAAGAAGG+TGG | + | chr8_1:69870028-69870047 | Msa1210690:intron | 40.0% | |
!! | GGAGAGAGTTTCTGTTTCTA+TGG | + | chr8_1:69870060-69870079 | Msa1210690:intron | 40.0% |
!! | TCTGTTTCTATGGGTCAAAG+TGG | + | chr8_1:69870070-69870089 | Msa1210690:CDS | 40.0% |
ACAGCATGGATCTGCATAAA+CGG | - | chr8_1:69870187-69870206 | None:intergenic | 40.0% | |
TTCTAGCACAATCAACAGCA+TGG | - | chr8_1:69870201-69870220 | None:intergenic | 40.0% | |
CTTCTTGAGGGATAATGCTA+GGG | - | chr8_1:69870260-69870279 | None:intergenic | 40.0% | |
CCGACATTGTCAATTGAACT+AGG | - | chr8_1:69870412-69870431 | None:intergenic | 40.0% | |
! | TTTTATCGGGTTCGAACCAA+GGG | + | chr8_1:69870450-69870469 | Msa1210690:intron | 40.0% |
GTCAATGAATTCGGTTGTGT+GGG | + | chr8_1:69870870-69870889 | Msa1210690:intron | 40.0% | |
! | TGTGTGGGTTGAAATATTGC+AGG | + | chr8_1:69870885-69870904 | Msa1210690:intron | 40.0% |
!!! | TGTATTGTGGGGACTAGTTT+TGG | + | chr8_1:69870940-69870959 | Msa1210690:CDS | 40.0% |
TCATTTGTGACCCATTCTGT+TGG | + | chr8_1:69870964-69870983 | Msa1210690:CDS | 40.0% | |
TTTGGTTGCTTAGCTAAAGC+AGG | - | chr8_1:69869472-69869491 | None:intergenic | 40.0% | |
!!! | GTTTTTGTAGTGGTGGGTTT+TGG | - | chr8_1:69869490-69869509 | None:intergenic | 40.0% |
! | ATGGTGGTTTTTGTAGTGGT+GGG | - | chr8_1:69869496-69869515 | None:intergenic | 40.0% |
!! | GAAGATGGTGGTTTTTGTAG+TGG | - | chr8_1:69869500-69869519 | None:intergenic | 40.0% |
! | TGAAGGTGATGATGAGAAGA+TGG | - | chr8_1:69869515-69869534 | None:intergenic | 40.0% |
TTTGGATAGTGAGAAGGTGA+AGG | - | chr8_1:69869532-69869551 | None:intergenic | 40.0% | |
CAAACGTGAGTCAACATGTT+TGG | - | chr8_1:69869656-69869675 | None:intergenic | 40.0% | |
!! | TCTGAACTAGGTTTTTGAGG+TGG | - | chr8_1:69869823-69869842 | None:intergenic | 40.0% |
TGGAAAAGTGGAAACTTCAG+GGG | + | chr8_1:69869845-69869864 | Msa1210690:CDS | 40.0% | |
GAATGAGAAAAAGGTGGTTG+AGG | + | chr8_1:69869876-69869895 | Msa1210690:CDS | 40.0% | |
AAAGGTGGTTGAGGATGTTA+AGG | + | chr8_1:69869885-69869904 | Msa1210690:CDS | 40.0% | |
ACTGTTGTGGAAAAAGAAGG+TGG | + | chr8_1:69870028-69870047 | Msa1210690:intron | 40.0% | |
!! | GGAGAGAGTTTCTGTTTCTA+TGG | + | chr8_1:69870060-69870079 | Msa1210690:intron | 40.0% |
!! | TCTGTTTCTATGGGTCAAAG+TGG | + | chr8_1:69870070-69870089 | Msa1210690:CDS | 40.0% |
ACAGCATGGATCTGCATAAA+CGG | - | chr8_1:69870187-69870206 | None:intergenic | 40.0% | |
TTCTAGCACAATCAACAGCA+TGG | - | chr8_1:69870201-69870220 | None:intergenic | 40.0% | |
CTTCTTGAGGGATAATGCTA+GGG | - | chr8_1:69870260-69870279 | None:intergenic | 40.0% | |
CCGACATTGTCAATTGAACT+AGG | - | chr8_1:69870412-69870431 | None:intergenic | 40.0% | |
! | TTTTATCGGGTTCGAACCAA+GGG | + | chr8_1:69870450-69870469 | Msa1210690:intron | 40.0% |
GTCAATGAATTCGGTTGTGT+GGG | + | chr8_1:69870870-69870889 | Msa1210690:intron | 40.0% | |
! | TGTGTGGGTTGAAATATTGC+AGG | + | chr8_1:69870885-69870904 | Msa1210690:intron | 40.0% |
!!! | TGTATTGTGGGGACTAGTTT+TGG | + | chr8_1:69870940-69870959 | Msa1210690:CDS | 40.0% |
TCATTTGTGACCCATTCTGT+TGG | + | chr8_1:69870964-69870983 | Msa1210690:CDS | 40.0% | |
!! | GATGGTGGTTTTTGTAGTGG+TGG | - | chr8_1:69869497-69869516 | None:intergenic | 45.0% |
! | AGGTGATGATGAGAAGATGG+TGG | - | chr8_1:69869512-69869531 | None:intergenic | 45.0% |
!! | CATGTTGACTCACGTTTGCA+AGG | + | chr8_1:69869658-69869677 | Msa1210690:CDS | 45.0% |
!! | GTTTGGTGGGTGTTGTTGTT+GGG | - | chr8_1:69869724-69869743 | None:intergenic | 45.0% |
!! | TGTTTGGTGGGTGTTGTTGT+TGG | - | chr8_1:69869725-69869744 | None:intergenic | 45.0% |
GTTTCTATGGGTCAAAGTGG+TGG | + | chr8_1:69870073-69870092 | Msa1210690:CDS | 45.0% | |
! | GAGGGATAATGCTAGGGTTT+TGG | - | chr8_1:69870254-69870273 | None:intergenic | 45.0% |
CCTTCTTGAGGGATAATGCT+AGG | - | chr8_1:69870261-69870280 | None:intergenic | 45.0% | |
CCTAGCATTATCCCTCAAGA+AGG | + | chr8_1:69870258-69870277 | Msa1210690:CDS | 45.0% | |
! | CTTTTATCGGGTTCGAACCA+AGG | + | chr8_1:69870449-69870468 | Msa1210690:intron | 45.0% |
!! | TAGCTGTGTCCGAGTTTTAG+TGG | + | chr8_1:69870483-69870502 | Msa1210690:intron | 45.0% |
GGTCAATGAATTCGGTTGTG+TGG | + | chr8_1:69870869-69870888 | Msa1210690:intron | 45.0% | |
CAGGAATTTGATGGGGTGTA+TGG | + | chr8_1:69870904-69870923 | Msa1210690:intron | 45.0% | |
TTTGTGACCCATTCTGTTGG+AGG | + | chr8_1:69870967-69870986 | Msa1210690:CDS | 45.0% | |
!! | GATGGTGGTTTTTGTAGTGG+TGG | - | chr8_1:69869497-69869516 | None:intergenic | 45.0% |
! | AGGTGATGATGAGAAGATGG+TGG | - | chr8_1:69869512-69869531 | None:intergenic | 45.0% |
!! | CATGTTGACTCACGTTTGCA+AGG | + | chr8_1:69869658-69869677 | Msa1210690:CDS | 45.0% |
!! | GTTTGGTGGGTGTTGTTGTT+GGG | - | chr8_1:69869724-69869743 | None:intergenic | 45.0% |
!! | TGTTTGGTGGGTGTTGTTGT+TGG | - | chr8_1:69869725-69869744 | None:intergenic | 45.0% |
GTTTCTATGGGTCAAAGTGG+TGG | + | chr8_1:69870073-69870092 | Msa1210690:CDS | 45.0% | |
! | GAGGGATAATGCTAGGGTTT+TGG | - | chr8_1:69870254-69870273 | None:intergenic | 45.0% |
CCTTCTTGAGGGATAATGCT+AGG | - | chr8_1:69870261-69870280 | None:intergenic | 45.0% | |
CCTAGCATTATCCCTCAAGA+AGG | + | chr8_1:69870258-69870277 | Msa1210690:CDS | 45.0% | |
! | CTTTTATCGGGTTCGAACCA+AGG | + | chr8_1:69870449-69870468 | Msa1210690:intron | 45.0% |
!! | TAGCTGTGTCCGAGTTTTAG+TGG | + | chr8_1:69870483-69870502 | Msa1210690:intron | 45.0% |
GGTCAATGAATTCGGTTGTG+TGG | + | chr8_1:69870869-69870888 | Msa1210690:intron | 45.0% | |
CAGGAATTTGATGGGGTGTA+TGG | + | chr8_1:69870904-69870923 | Msa1210690:intron | 45.0% | |
TTTGTGACCCATTCTGTTGG+AGG | + | chr8_1:69870967-69870986 | Msa1210690:CDS | 45.0% | |
TGCTTAGCTAAAGCAGGAGG+TGG | - | chr8_1:69869466-69869485 | None:intergenic | 50.0% | |
GGTTGCTTAGCTAAAGCAGG+AGG | - | chr8_1:69869469-69869488 | None:intergenic | 50.0% | |
GCATGGATCTGCATAAACGG+TGG | - | chr8_1:69870184-69870203 | None:intergenic | 50.0% | |
ACCAGCATGGCACTGTATTG+TGG | + | chr8_1:69870927-69870946 | Msa1210690:CDS | 50.0% | |
CCAGCATGGCACTGTATTGT+GGG | + | chr8_1:69870928-69870947 | Msa1210690:CDS | 50.0% | |
CAGCATGGCACTGTATTGTG+GGG | + | chr8_1:69870929-69870948 | Msa1210690:CDS | 50.0% | |
TGCTTAGCTAAAGCAGGAGG+TGG | - | chr8_1:69869466-69869485 | None:intergenic | 50.0% | |
GGTTGCTTAGCTAAAGCAGG+AGG | - | chr8_1:69869469-69869488 | None:intergenic | 50.0% | |
GCATGGATCTGCATAAACGG+TGG | - | chr8_1:69870184-69870203 | None:intergenic | 50.0% | |
ACCAGCATGGCACTGTATTG+TGG | + | chr8_1:69870927-69870946 | Msa1210690:CDS | 50.0% | |
CCAGCATGGCACTGTATTGT+GGG | + | chr8_1:69870928-69870947 | Msa1210690:CDS | 50.0% | |
CAGCATGGCACTGTATTGTG+GGG | + | chr8_1:69870929-69870948 | Msa1210690:CDS | 50.0% | |
! | GCAGGAGGTGGATTTGTCTC+CGG | - | chr8_1:69869454-69869473 | None:intergenic | 55.0% |
ATCGGGTTCGAACCAAGGGT+AGG | + | chr8_1:69870454-69870473 | Msa1210690:intron | 55.0% | |
TCGGGTTCGAACCAAGGGTA+GGG | + | chr8_1:69870455-69870474 | Msa1210690:intron | 55.0% | |
CAGCTACAAGACCCTACCCT+TGG | - | chr8_1:69870469-69870488 | None:intergenic | 55.0% | |
ATGGGGTGTATGGACCAGCA+TGG | + | chr8_1:69870914-69870933 | Msa1210690:CDS | 55.0% | |
CCCACAATACAGTGCCATGC+TGG | - | chr8_1:69870931-69870950 | None:intergenic | 55.0% | |
! | GCAGGAGGTGGATTTGTCTC+CGG | - | chr8_1:69869454-69869473 | None:intergenic | 55.0% |
ATCGGGTTCGAACCAAGGGT+AGG | + | chr8_1:69870454-69870473 | Msa1210690:intron | 55.0% | |
TCGGGTTCGAACCAAGGGTA+GGG | + | chr8_1:69870455-69870474 | Msa1210690:intron | 55.0% | |
CAGCTACAAGACCCTACCCT+TGG | - | chr8_1:69870469-69870488 | None:intergenic | 55.0% | |
ATGGGGTGTATGGACCAGCA+TGG | + | chr8_1:69870914-69870933 | Msa1210690:CDS | 55.0% | |
CCCACAATACAGTGCCATGC+TGG | - | chr8_1:69870931-69870950 | None:intergenic | 55.0% | |
TGTTTCGCCGGCGGGAAGAA+CGG | - | chr8_1:69869423-69869442 | None:intergenic | 60.0% | |
TTCTTCCCGCCGGCGAAACA+CGG | + | chr8_1:69869423-69869442 | Msa1210690:CDS | 60.0% | |
! | GGAGGTGGATTTGTCTCCGG+TGG | - | chr8_1:69869451-69869470 | None:intergenic | 60.0% |
TGTTTCGCCGGCGGGAAGAA+CGG | - | chr8_1:69869423-69869442 | None:intergenic | 60.0% | |
TTCTTCCCGCCGGCGAAACA+CGG | + | chr8_1:69869423-69869442 | Msa1210690:CDS | 60.0% | |
! | GGAGGTGGATTTGTCTCCGG+TGG | - | chr8_1:69869451-69869470 | None:intergenic | 60.0% |
TGGCACACCGTTCTTCCCGC+CGG | + | chr8_1:69869413-69869432 | Msa1210690:CDS | 65.0% | |
TGGCACACCGTTCTTCCCGC+CGG | + | chr8_1:69869413-69869432 | Msa1210690:CDS | 65.0% | |
!! | TGGTGCCGTGTTTCGCCGGC+GGG | - | chr8_1:69869431-69869450 | None:intergenic | 70.0% |
!! | GTGGTGCCGTGTTTCGCCGG+CGG | - | chr8_1:69869432-69869451 | None:intergenic | 70.0% |
!! | CCGGTGGTGCCGTGTTTCGC+CGG | - | chr8_1:69869435-69869454 | None:intergenic | 70.0% |
CCGGCGAAACACGGCACCAC+CGG | + | chr8_1:69869432-69869451 | Msa1210690:CDS | 70.0% | |
!! | TGGTGCCGTGTTTCGCCGGC+GGG | - | chr8_1:69869431-69869450 | None:intergenic | 70.0% |
!! | GTGGTGCCGTGTTTCGCCGG+CGG | - | chr8_1:69869432-69869451 | None:intergenic | 70.0% |
!! | CCGGTGGTGCCGTGTTTCGC+CGG | - | chr8_1:69869435-69869454 | None:intergenic | 70.0% |
CCGGCGAAACACGGCACCAC+CGG | + | chr8_1:69869432-69869451 | Msa1210690:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_1 | gene | 69869412 | 69871062 | 69869412 | ID=Msa1210690;Name=Msa1210690 |
chr8_1 | mRNA | 69869412 | 69871062 | 69869412 | ID=Msa1210690-mRNA-1;Parent=Msa1210690;Name=Msa1210690-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|3|0|289 |
chr8_1 | exon | 69869412 | 69869906 | 69869412 | ID=Msa1210690-mRNA-1:exon:23332;Parent=Msa1210690-mRNA-1 |
chr8_1 | exon | 69870061 | 69870279 | 69870061 | ID=Msa1210690-mRNA-1:exon:23333;Parent=Msa1210690-mRNA-1 |
chr8_1 | exon | 69870907 | 69871062 | 69870907 | ID=Msa1210690-mRNA-1:exon:23334;Parent=Msa1210690-mRNA-1 |
chr8_1 | CDS | 69869412 | 69869906 | 69869412 | ID=Msa1210690-mRNA-1:cds;Parent=Msa1210690-mRNA-1 |
chr8_1 | CDS | 69870061 | 69870279 | 69870061 | ID=Msa1210690-mRNA-1:cds;Parent=Msa1210690-mRNA-1 |
chr8_1 | CDS | 69870907 | 69871062 | 69870907 | ID=Msa1210690-mRNA-1:cds;Parent=Msa1210690-mRNA-1 |
Gene Sequence |
Protein sequence |