AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1210690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1210690 MtrunA17_Chr4g0059791 93.160 307 3 3 1 289 1 307 0.0 574
Msa1210690 MtrunA17_Chr4g0063491 65.934 91 30 1 198 288 154 243 2.28e-39 138
Msa1210690 MtrunA17_Chr8g0391451 62.626 99 34 2 193 289 49 146 1.87e-37 130
Msa1210690 MtrunA17_Chr4g0067531 51.807 83 37 2 202 284 51 130 4.75e-21 86.7
Msa1210690 MtrunA17_Chr2g0331651 46.067 89 46 2 195 282 2 89 2.36e-20 83.6
Msa1210690 MtrunA17_Chr8g0360861 50.633 79 38 1 204 282 12 89 4.45e-18 78.2
Msa1210690 MtrunA17_Chr6g0485891 44.444 81 44 1 204 284 46 125 6.08e-16 72.8
Msa1210690 MtrunA17_Chr1g0160981 45.946 74 38 1 196 267 51 124 1.40e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1210690 AT5G20110.1 67.033 91 29 1 198 288 117 206 1.92e-39 137
Msa1210690 AT1G23220.1 53.763 93 41 2 198 289 36 127 2.59e-27 103
Msa1210690 AT1G52245.1 46.154 91 47 2 195 284 2 91 4.97e-19 80.5
Msa1210690 AT4G15930.1 47.727 88 41 3 198 284 40 123 5.05e-19 81.3
Msa1210690 AT3G16120.2 47.126 87 45 1 198 284 6 91 6.89e-19 80.1
Msa1210690 AT3G16120.1 47.126 87 45 1 198 284 6 91 6.89e-19 80.1
Msa1210690 AT4G27360.1 46.591 88 46 1 198 285 6 92 2.82e-16 73.6

Find 67 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAGGTGGTTTCTCTTTA+AGG 0.077615 8_1:-69869807 None:intergenic
GGTGATTTCTTTGCAATTAA+TGG 0.142399 8_1:+69870133 Msa1210690:CDS
ATCAAATCTTGGTTTGGTTT+TGG 0.235547 8_1:-69869547 None:intergenic
TGTATTGTGGGGACTAGTTT+TGG 0.238004 8_1:+69870940 Msa1210690:CDS
GTACAGCAGTCTTGAATATA+AGG 0.239212 8_1:-69871026 None:intergenic
GGAGAGAGTTTCTGTTTCTA+TGG 0.258173 8_1:+69870060 Msa1210690:intron
TTGAGGTGGTTTCTCTTTAA+GGG 0.259606 8_1:-69869806 None:intergenic
TGTGGGTCAATGATTGATTT+AGG 0.289700 8_1:+69870112 Msa1210690:CDS
GAGGGATAATGCTAGGGTTT+TGG 0.302500 8_1:-69870251 None:intergenic
ATTGGAAAAGTGGAAACTTC+AGG 0.346164 8_1:+69869843 Msa1210690:CDS
TGTTTGGTGGGTGTTGTTGT+TGG 0.366216 8_1:-69869722 None:intergenic
CAAACGTGAGTCAACATGTT+TGG 0.366632 8_1:-69869653 None:intergenic
GTTTGGTGGGTGTTGTTGTT+GGG 0.396439 8_1:-69869721 None:intergenic
GAAATATTGCAGGAATTTGA+TGG 0.396694 8_1:+69870895 Msa1210690:intron
AAAGGTGGTTGAGGATGTTA+AGG 0.409778 8_1:+69869885 Msa1210690:CDS
CAGGAATTTGATGGGGTGTA+TGG 0.421928 8_1:+69870904 Msa1210690:intron
GCTTGAATCAAATCTTGGTT+TGG 0.433215 8_1:-69869553 None:intergenic
TAGTAGCTTGAATCAAATCT+TGG 0.435025 8_1:-69869558 None:intergenic
GTTGTTGAAGAATGAGAAAA+AGG 0.446134 8_1:+69869867 Msa1210690:CDS
TTTGGTTTGAGAATGTTGTT+TGG 0.446853 8_1:-69869635 None:intergenic
CCGGCGAAACACGGCACCAC+CGG 0.446993 8_1:+69869432 Msa1210690:CDS
TTGGAAAAGTGGAAACTTCA+GGG 0.459465 8_1:+69869844 Msa1210690:CDS
AGGATTTCTATATTTCTCAA+TGG 0.472685 8_1:+69870987 Msa1210690:CDS
CCTTCTTGAGGGATAATGCT+AGG 0.479039 8_1:-69870258 None:intergenic
TTTGTGACCCATTCTGTTGG+AGG 0.480594 8_1:+69870967 Msa1210690:CDS
TGGTGCCGTGTTTCGCCGGC+GGG 0.480858 8_1:-69869428 None:intergenic
ACAGCATGGATCTGCATAAA+CGG 0.483580 8_1:-69870184 None:intergenic
TATGAATTATACCTTCTTGA+GGG 0.489208 8_1:-69870269 None:intergenic
TTTGGTTGCTTAGCTAAAGC+AGG 0.490079 8_1:-69869469 None:intergenic
TCATTTGTGACCCATTCTGT+TGG 0.494391 8_1:+69870964 Msa1210690:CDS
CTTCTTGAGGGATAATGCTA+GGG 0.494928 8_1:-69870257 None:intergenic
CCGGTGGTGCCGTGTTTCGC+CGG 0.500458 8_1:-69869432 None:intergenic
CCAGCATGGCACTGTATTGT+GGG 0.504817 8_1:+69870928 Msa1210690:CDS
TAGAAATCCTCCAACAGAAT+GGG 0.505407 8_1:-69870974 None:intergenic
GAGAGAGTTTCTGTTTCTAT+GGG 0.506756 8_1:+69870061 Msa1210690:CDS
TGCTTAGCTAAAGCAGGAGG+TGG 0.509007 8_1:-69869463 None:intergenic
CCTAAGTTAAGACTTTGAAA+AGG 0.512023 8_1:-69869601 None:intergenic
CTAGTTCAGAATTGGAAAAG+TGG 0.512540 8_1:+69869833 Msa1210690:CDS
CATGTTGACTCACGTTTGCA+AGG 0.516215 8_1:+69869658 Msa1210690:CDS
TGTTTCGCCGGCGGGAAGAA+CGG 0.519846 8_1:-69869420 None:intergenic
AAATATTGCAGGAATTTGAT+GGG 0.521597 8_1:+69870896 Msa1210690:intron
GGTAGAAGAAAATCGTTATG+TGG 0.525728 8_1:+69870094 Msa1210690:CDS
CCCACAATACAGTGCCATGC+TGG 0.538117 8_1:-69870928 None:intergenic
ATATGAATTATACCTTCTTG+AGG 0.545883 8_1:-69870270 None:intergenic
GTTTCTATGGGTCAAAGTGG+TGG 0.547379 8_1:+69870073 Msa1210690:CDS
ATAGAAATCCTCCAACAGAA+TGG 0.547634 8_1:-69870975 None:intergenic
AAATATAGCTGAGGTTGTCA+TGG 0.552151 8_1:-69869686 None:intergenic
GCAGGAGGTGGATTTGTCTC+CGG 0.556923 8_1:-69869451 None:intergenic
TTCTTCCCGCCGGCGAAACA+CGG 0.557264 8_1:+69869423 Msa1210690:CDS
GTGGTGCCGTGTTTCGCCGG+CGG 0.566812 8_1:-69869429 None:intergenic
TTCTAGCACAATCAACAGCA+TGG 0.575374 8_1:-69870198 None:intergenic
ACCAGCATGGCACTGTATTG+TGG 0.577524 8_1:+69870927 Msa1210690:CDS
CCTAGCATTATCCCTCAAGA+AGG 0.579726 8_1:+69870258 Msa1210690:CDS
TGAAGGTGATGATGAGAAGA+TGG 0.583761 8_1:-69869512 None:intergenic
GTAGAAGAAAATCGTTATGT+GGG 0.594942 8_1:+69870095 Msa1210690:CDS
TCTGTTTCTATGGGTCAAAG+TGG 0.611585 8_1:+69870070 Msa1210690:CDS
TGATGAATCAAATATAGCTG+AGG 0.614815 8_1:-69869695 None:intergenic
GGAGGTGGATTTGTCTCCGG+TGG 0.623941 8_1:-69869448 None:intergenic
TGGCACACCGTTCTTCCCGC+CGG 0.632791 8_1:+69869413 Msa1210690:CDS
GGTTGCTTAGCTAAAGCAGG+AGG 0.641795 8_1:-69869466 None:intergenic
CAGCATGGCACTGTATTGTG+GGG 0.649093 8_1:+69870929 Msa1210690:CDS
TGGAAAAGTGGAAACTTCAG+GGG 0.656471 8_1:+69869845 Msa1210690:CDS
TTTGGATAGTGAGAAGGTGA+AGG 0.666862 8_1:-69869529 None:intergenic
AGGTGATGATGAGAAGATGG+TGG 0.684245 8_1:-69869509 None:intergenic
AATATTGCAGGAATTTGATG+GGG 0.687792 8_1:+69870897 Msa1210690:intron
GCATGGATCTGCATAAACGG+TGG 0.717762 8_1:-69870181 None:intergenic
ATGGGGTGTATGGACCAGCA+TGG 0.734479 8_1:+69870914 Msa1210690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTGAATGAATTGATTA+TGG + chr8_1:69870358-69870377 Msa1210690:intron 20.0%
!!! ATGTACACAAAATTTGATTT+GGG - chr8_1:69870586-69870605 None:intergenic 20.0%
!!! TCAAATCATTTTGCTAAATT+TGG - chr8_1:69870696-69870715 None:intergenic 20.0%
!!! TTATAATGATTTTCTTTAGG+AGG - chr8_1:69870767-69870786 None:intergenic 20.0%
!!! CGTTTATAATGATTTTCTTT+AGG - chr8_1:69870770-69870789 None:intergenic 20.0%
!! AAAGAAAATCATTATAAACG+TGG + chr8_1:69870770-69870789 Msa1210690:intron 20.0%
!!! TTTTGCATTAGGAATAATTT+AGG + chr8_1:69870798-69870817 Msa1210690:intron 20.0%
!! TTTGCATTAGGAATAATTTA+GGG + chr8_1:69870799-69870818 Msa1210690:intron 20.0%
!!! TGAATATTTTAGTGAATGAT+TGG + chr8_1:69870848-69870867 Msa1210690:intron 20.0%
!!! AGTTTTGAATGAATTGATTA+TGG + chr8_1:69870358-69870377 Msa1210690:intron 20.0%
!!! ATGTACACAAAATTTGATTT+GGG - chr8_1:69870586-69870605 None:intergenic 20.0%
!!! TCAAATCATTTTGCTAAATT+TGG - chr8_1:69870696-69870715 None:intergenic 20.0%
!!! TTATAATGATTTTCTTTAGG+AGG - chr8_1:69870767-69870786 None:intergenic 20.0%
!!! CGTTTATAATGATTTTCTTT+AGG - chr8_1:69870770-69870789 None:intergenic 20.0%
!! AAAGAAAATCATTATAAACG+TGG + chr8_1:69870770-69870789 Msa1210690:intron 20.0%
!!! TTTTGCATTAGGAATAATTT+AGG + chr8_1:69870798-69870817 Msa1210690:intron 20.0%
!! TTTGCATTAGGAATAATTTA+GGG + chr8_1:69870799-69870818 Msa1210690:intron 20.0%
!!! TGAATATTTTAGTGAATGAT+TGG + chr8_1:69870848-69870867 Msa1210690:intron 20.0%
!! TTAGTACTGTGATTTTTGTT+TGG - chr8_1:69869741-69869760 None:intergenic 25.0%
!!! ACACTATCTTTTTCATGATT+TGG - chr8_1:69869766-69869785 None:intergenic 25.0%
!!! TAGAAAAGCTTTTGATAGTA+TGG + chr8_1:69870216-69870235 Msa1210690:CDS 25.0%
! TATGAATTATACCTTCTTGA+GGG - chr8_1:69870272-69870291 None:intergenic 25.0%
! ATATGAATTATACCTTCTTG+AGG - chr8_1:69870273-69870292 None:intergenic 25.0%
! TCAATTGAACTAGGTTTAAA+TGG - chr8_1:69870403-69870422 None:intergenic 25.0%
! CATGTACACAAAATTTGATT+TGG - chr8_1:69870587-69870606 None:intergenic 25.0%
!!! ACTTACATTCAAGTCATTTT+GGG - chr8_1:69870610-69870629 None:intergenic 25.0%
!! TCATTTTGCTAAATTTGGAT+CGG - chr8_1:69870691-69870710 None:intergenic 25.0%
! AAATATTGCAGGAATTTGAT+GGG + chr8_1:69870896-69870915 Msa1210690:intron 25.0%
! AGGATTTCTATATTTCTCAA+TGG + chr8_1:69870987-69871006 Msa1210690:CDS 25.0%
!! TTAGTACTGTGATTTTTGTT+TGG - chr8_1:69869741-69869760 None:intergenic 25.0%
!!! ACACTATCTTTTTCATGATT+TGG - chr8_1:69869766-69869785 None:intergenic 25.0%
!!! TAGAAAAGCTTTTGATAGTA+TGG + chr8_1:69870216-69870235 Msa1210690:CDS 25.0%
! TATGAATTATACCTTCTTGA+GGG - chr8_1:69870272-69870291 None:intergenic 25.0%
! ATATGAATTATACCTTCTTG+AGG - chr8_1:69870273-69870292 None:intergenic 25.0%
! TCAATTGAACTAGGTTTAAA+TGG - chr8_1:69870403-69870422 None:intergenic 25.0%
! CATGTACACAAAATTTGATT+TGG - chr8_1:69870587-69870606 None:intergenic 25.0%
!!! ACTTACATTCAAGTCATTTT+GGG - chr8_1:69870610-69870629 None:intergenic 25.0%
!! TCATTTTGCTAAATTTGGAT+CGG - chr8_1:69870691-69870710 None:intergenic 25.0%
! AAATATTGCAGGAATTTGAT+GGG + chr8_1:69870896-69870915 Msa1210690:intron 25.0%
! AGGATTTCTATATTTCTCAA+TGG + chr8_1:69870987-69871006 Msa1210690:CDS 25.0%
!!! ATCAAATCTTGGTTTGGTTT+TGG - chr8_1:69869550-69869569 None:intergenic 30.0%
TAGTAGCTTGAATCAAATCT+TGG - chr8_1:69869561-69869580 None:intergenic 30.0%
! CCTAAGTTAAGACTTTGAAA+AGG - chr8_1:69869604-69869623 None:intergenic 30.0%
! CCTTTTCAAAGTCTTAACTT+AGG + chr8_1:69869601-69869620 Msa1210690:CDS 30.0%
!! TTTGGTTTGAGAATGTTGTT+TGG - chr8_1:69869638-69869657 None:intergenic 30.0%
TGATGAATCAAATATAGCTG+AGG - chr8_1:69869698-69869717 None:intergenic 30.0%
!! TACTGTGATTTTTGTTTGGT+GGG - chr8_1:69869737-69869756 None:intergenic 30.0%
!!! GTGTTTTTTTGCATTCTAAG+AGG + chr8_1:69869782-69869801 Msa1210690:CDS 30.0%
! AATTCTGAACTAGGTTTTTG+AGG - chr8_1:69869826-69869845 None:intergenic 30.0%
TCAAAAACCTAGTTCAGAAT+TGG + chr8_1:69869825-69869844 Msa1210690:CDS 30.0%
GTTGTTGAAGAATGAGAAAA+AGG + chr8_1:69869867-69869886 Msa1210690:CDS 30.0%
GTAGAAGAAAATCGTTATGT+GGG + chr8_1:69870095-69870114 Msa1210690:CDS 30.0%
GGTGATTTCTTTGCAATTAA+TGG + chr8_1:69870133-69870152 Msa1210690:CDS 30.0%
TGCAATTAATGGAGCAAAAA+TGG + chr8_1:69870144-69870163 Msa1210690:CDS 30.0%
! GTTAGACTTGACACTTTTAT+CGG + chr8_1:69870436-69870455 Msa1210690:intron 30.0%
! TTAGACTTGACACTTTTATC+GGG + chr8_1:69870437-69870456 Msa1210690:intron 30.0%
! CACTTACATTCAAGTCATTT+TGG - chr8_1:69870611-69870630 None:intergenic 30.0%
GTGTATGTTTGAATTTAGTG+TGG + chr8_1:69870628-69870647 Msa1210690:intron 30.0%
! ATTTTGCTAAATTTGGATCG+GGG - chr8_1:69870689-69870708 None:intergenic 30.0%
! CATTTTGCTAAATTTGGATC+GGG - chr8_1:69870690-69870709 None:intergenic 30.0%
! GAATGATTGGTCAATGAATT+CGG + chr8_1:69870861-69870880 Msa1210690:intron 30.0%
GAAATATTGCAGGAATTTGA+TGG + chr8_1:69870895-69870914 Msa1210690:intron 30.0%
AATATTGCAGGAATTTGATG+GGG + chr8_1:69870897-69870916 Msa1210690:intron 30.0%
!!! ATCAAATCTTGGTTTGGTTT+TGG - chr8_1:69869550-69869569 None:intergenic 30.0%
TAGTAGCTTGAATCAAATCT+TGG - chr8_1:69869561-69869580 None:intergenic 30.0%
! CCTAAGTTAAGACTTTGAAA+AGG - chr8_1:69869604-69869623 None:intergenic 30.0%
! CCTTTTCAAAGTCTTAACTT+AGG + chr8_1:69869601-69869620 Msa1210690:CDS 30.0%
!! TTTGGTTTGAGAATGTTGTT+TGG - chr8_1:69869638-69869657 None:intergenic 30.0%
TGATGAATCAAATATAGCTG+AGG - chr8_1:69869698-69869717 None:intergenic 30.0%
!! TACTGTGATTTTTGTTTGGT+GGG - chr8_1:69869737-69869756 None:intergenic 30.0%
!!! GTGTTTTTTTGCATTCTAAG+AGG + chr8_1:69869782-69869801 Msa1210690:CDS 30.0%
! AATTCTGAACTAGGTTTTTG+AGG - chr8_1:69869826-69869845 None:intergenic 30.0%
TCAAAAACCTAGTTCAGAAT+TGG + chr8_1:69869825-69869844 Msa1210690:CDS 30.0%
GTTGTTGAAGAATGAGAAAA+AGG + chr8_1:69869867-69869886 Msa1210690:CDS 30.0%
GTAGAAGAAAATCGTTATGT+GGG + chr8_1:69870095-69870114 Msa1210690:CDS 30.0%
GGTGATTTCTTTGCAATTAA+TGG + chr8_1:69870133-69870152 Msa1210690:CDS 30.0%
TGCAATTAATGGAGCAAAAA+TGG + chr8_1:69870144-69870163 Msa1210690:CDS 30.0%
! GTTAGACTTGACACTTTTAT+CGG + chr8_1:69870436-69870455 Msa1210690:intron 30.0%
! TTAGACTTGACACTTTTATC+GGG + chr8_1:69870437-69870456 Msa1210690:intron 30.0%
! CACTTACATTCAAGTCATTT+TGG - chr8_1:69870611-69870630 None:intergenic 30.0%
GTGTATGTTTGAATTTAGTG+TGG + chr8_1:69870628-69870647 Msa1210690:intron 30.0%
! ATTTTGCTAAATTTGGATCG+GGG - chr8_1:69870689-69870708 None:intergenic 30.0%
! CATTTTGCTAAATTTGGATC+GGG - chr8_1:69870690-69870709 None:intergenic 30.0%
! GAATGATTGGTCAATGAATT+CGG + chr8_1:69870861-69870880 Msa1210690:intron 30.0%
GAAATATTGCAGGAATTTGA+TGG + chr8_1:69870895-69870914 Msa1210690:intron 30.0%
AATATTGCAGGAATTTGATG+GGG + chr8_1:69870897-69870916 Msa1210690:intron 30.0%
!!! TTTGGTTTTGGATAGTGAGA+AGG - chr8_1:69869538-69869557 None:intergenic 35.0%
GCTTGAATCAAATCTTGGTT+TGG - chr8_1:69869556-69869575 None:intergenic 35.0%
AAATATAGCTGAGGTTGTCA+TGG - chr8_1:69869689-69869708 None:intergenic 35.0%
!! GTACTGTGATTTTTGTTTGG+TGG - chr8_1:69869738-69869757 None:intergenic 35.0%
TTGAGGTGGTTTCTCTTTAA+GGG - chr8_1:69869809-69869828 None:intergenic 35.0%
! TTTGAGGTGGTTTCTCTTTA+AGG - chr8_1:69869810-69869829 None:intergenic 35.0%
! CACTTTTCCAATTCTGAACT+AGG - chr8_1:69869835-69869854 None:intergenic 35.0%
CTAGTTCAGAATTGGAAAAG+TGG + chr8_1:69869833-69869852 Msa1210690:CDS 35.0%
ATTGGAAAAGTGGAAACTTC+AGG + chr8_1:69869843-69869862 Msa1210690:CDS 35.0%
TTGGAAAAGTGGAAACTTCA+GGG + chr8_1:69869844-69869863 Msa1210690:CDS 35.0%
GTTGAAGAATGAGAAAAAGG+TGG + chr8_1:69869870-69869889 Msa1210690:CDS 35.0%
GTAACTGTTGTGGAAAAAGA+AGG + chr8_1:69870025-69870044 Msa1210690:intron 35.0%
! AAAAGAAGGTGGTGATGTTA+AGG + chr8_1:69870039-69870058 Msa1210690:intron 35.0%
!! GAGAGAGTTTCTGTTTCTAT+GGG + chr8_1:69870061-69870080 Msa1210690:CDS 35.0%
GGTAGAAGAAAATCGTTATG+TGG + chr8_1:69870094-69870113 Msa1210690:CDS 35.0%
! TGTGGGTCAATGATTGATTT+AGG + chr8_1:69870112-69870131 Msa1210690:CDS 35.0%
CCTAGTTCAATTGACAATGT+CGG + chr8_1:69870409-69870428 Msa1210690:intron 35.0%
ATCTAAGGACCACTAAAACT+CGG - chr8_1:69870495-69870514 None:intergenic 35.0%
ACATACGCTAAAGTCATCTA+AGG - chr8_1:69870510-69870529 None:intergenic 35.0%
TATGTTGACGAGAGAATGAT+TGG + chr8_1:69870525-69870544 Msa1210690:intron 35.0%
!! ACGTGGTTTACTTTTGCATT+AGG + chr8_1:69870787-69870806 Msa1210690:intron 35.0%
TAGAAATCCTCCAACAGAAT+GGG - chr8_1:69870977-69870996 None:intergenic 35.0%
ATAGAAATCCTCCAACAGAA+TGG - chr8_1:69870978-69870997 None:intergenic 35.0%
GTACAGCAGTCTTGAATATA+AGG - chr8_1:69871029-69871048 None:intergenic 35.0%
!!! TTTGGTTTTGGATAGTGAGA+AGG - chr8_1:69869538-69869557 None:intergenic 35.0%
GCTTGAATCAAATCTTGGTT+TGG - chr8_1:69869556-69869575 None:intergenic 35.0%
AAATATAGCTGAGGTTGTCA+TGG - chr8_1:69869689-69869708 None:intergenic 35.0%
!! GTACTGTGATTTTTGTTTGG+TGG - chr8_1:69869738-69869757 None:intergenic 35.0%
TTGAGGTGGTTTCTCTTTAA+GGG - chr8_1:69869809-69869828 None:intergenic 35.0%
! TTTGAGGTGGTTTCTCTTTA+AGG - chr8_1:69869810-69869829 None:intergenic 35.0%
! CACTTTTCCAATTCTGAACT+AGG - chr8_1:69869835-69869854 None:intergenic 35.0%
CTAGTTCAGAATTGGAAAAG+TGG + chr8_1:69869833-69869852 Msa1210690:CDS 35.0%
ATTGGAAAAGTGGAAACTTC+AGG + chr8_1:69869843-69869862 Msa1210690:CDS 35.0%
TTGGAAAAGTGGAAACTTCA+GGG + chr8_1:69869844-69869863 Msa1210690:CDS 35.0%
GTTGAAGAATGAGAAAAAGG+TGG + chr8_1:69869870-69869889 Msa1210690:CDS 35.0%
GTAACTGTTGTGGAAAAAGA+AGG + chr8_1:69870025-69870044 Msa1210690:intron 35.0%
! AAAAGAAGGTGGTGATGTTA+AGG + chr8_1:69870039-69870058 Msa1210690:intron 35.0%
!! GAGAGAGTTTCTGTTTCTAT+GGG + chr8_1:69870061-69870080 Msa1210690:CDS 35.0%
GGTAGAAGAAAATCGTTATG+TGG + chr8_1:69870094-69870113 Msa1210690:CDS 35.0%
! TGTGGGTCAATGATTGATTT+AGG + chr8_1:69870112-69870131 Msa1210690:CDS 35.0%
CCTAGTTCAATTGACAATGT+CGG + chr8_1:69870409-69870428 Msa1210690:intron 35.0%
ATCTAAGGACCACTAAAACT+CGG - chr8_1:69870495-69870514 None:intergenic 35.0%
ACATACGCTAAAGTCATCTA+AGG - chr8_1:69870510-69870529 None:intergenic 35.0%
TATGTTGACGAGAGAATGAT+TGG + chr8_1:69870525-69870544 Msa1210690:intron 35.0%
!! ACGTGGTTTACTTTTGCATT+AGG + chr8_1:69870787-69870806 Msa1210690:intron 35.0%
TAGAAATCCTCCAACAGAAT+GGG - chr8_1:69870977-69870996 None:intergenic 35.0%
ATAGAAATCCTCCAACAGAA+TGG - chr8_1:69870978-69870997 None:intergenic 35.0%
GTACAGCAGTCTTGAATATA+AGG - chr8_1:69871029-69871048 None:intergenic 35.0%
TTTGGTTGCTTAGCTAAAGC+AGG - chr8_1:69869472-69869491 None:intergenic 40.0%
!!! GTTTTTGTAGTGGTGGGTTT+TGG - chr8_1:69869490-69869509 None:intergenic 40.0%
! ATGGTGGTTTTTGTAGTGGT+GGG - chr8_1:69869496-69869515 None:intergenic 40.0%
!! GAAGATGGTGGTTTTTGTAG+TGG - chr8_1:69869500-69869519 None:intergenic 40.0%
! TGAAGGTGATGATGAGAAGA+TGG - chr8_1:69869515-69869534 None:intergenic 40.0%
TTTGGATAGTGAGAAGGTGA+AGG - chr8_1:69869532-69869551 None:intergenic 40.0%
CAAACGTGAGTCAACATGTT+TGG - chr8_1:69869656-69869675 None:intergenic 40.0%
!! TCTGAACTAGGTTTTTGAGG+TGG - chr8_1:69869823-69869842 None:intergenic 40.0%
TGGAAAAGTGGAAACTTCAG+GGG + chr8_1:69869845-69869864 Msa1210690:CDS 40.0%
GAATGAGAAAAAGGTGGTTG+AGG + chr8_1:69869876-69869895 Msa1210690:CDS 40.0%
AAAGGTGGTTGAGGATGTTA+AGG + chr8_1:69869885-69869904 Msa1210690:CDS 40.0%
ACTGTTGTGGAAAAAGAAGG+TGG + chr8_1:69870028-69870047 Msa1210690:intron 40.0%
!! GGAGAGAGTTTCTGTTTCTA+TGG + chr8_1:69870060-69870079 Msa1210690:intron 40.0%
!! TCTGTTTCTATGGGTCAAAG+TGG + chr8_1:69870070-69870089 Msa1210690:CDS 40.0%
ACAGCATGGATCTGCATAAA+CGG - chr8_1:69870187-69870206 None:intergenic 40.0%
TTCTAGCACAATCAACAGCA+TGG - chr8_1:69870201-69870220 None:intergenic 40.0%
CTTCTTGAGGGATAATGCTA+GGG - chr8_1:69870260-69870279 None:intergenic 40.0%
CCGACATTGTCAATTGAACT+AGG - chr8_1:69870412-69870431 None:intergenic 40.0%
! TTTTATCGGGTTCGAACCAA+GGG + chr8_1:69870450-69870469 Msa1210690:intron 40.0%
GTCAATGAATTCGGTTGTGT+GGG + chr8_1:69870870-69870889 Msa1210690:intron 40.0%
! TGTGTGGGTTGAAATATTGC+AGG + chr8_1:69870885-69870904 Msa1210690:intron 40.0%
!!! TGTATTGTGGGGACTAGTTT+TGG + chr8_1:69870940-69870959 Msa1210690:CDS 40.0%
TCATTTGTGACCCATTCTGT+TGG + chr8_1:69870964-69870983 Msa1210690:CDS 40.0%
TTTGGTTGCTTAGCTAAAGC+AGG - chr8_1:69869472-69869491 None:intergenic 40.0%
!!! GTTTTTGTAGTGGTGGGTTT+TGG - chr8_1:69869490-69869509 None:intergenic 40.0%
! ATGGTGGTTTTTGTAGTGGT+GGG - chr8_1:69869496-69869515 None:intergenic 40.0%
!! GAAGATGGTGGTTTTTGTAG+TGG - chr8_1:69869500-69869519 None:intergenic 40.0%
! TGAAGGTGATGATGAGAAGA+TGG - chr8_1:69869515-69869534 None:intergenic 40.0%
TTTGGATAGTGAGAAGGTGA+AGG - chr8_1:69869532-69869551 None:intergenic 40.0%
CAAACGTGAGTCAACATGTT+TGG - chr8_1:69869656-69869675 None:intergenic 40.0%
!! TCTGAACTAGGTTTTTGAGG+TGG - chr8_1:69869823-69869842 None:intergenic 40.0%
TGGAAAAGTGGAAACTTCAG+GGG + chr8_1:69869845-69869864 Msa1210690:CDS 40.0%
GAATGAGAAAAAGGTGGTTG+AGG + chr8_1:69869876-69869895 Msa1210690:CDS 40.0%
AAAGGTGGTTGAGGATGTTA+AGG + chr8_1:69869885-69869904 Msa1210690:CDS 40.0%
ACTGTTGTGGAAAAAGAAGG+TGG + chr8_1:69870028-69870047 Msa1210690:intron 40.0%
!! GGAGAGAGTTTCTGTTTCTA+TGG + chr8_1:69870060-69870079 Msa1210690:intron 40.0%
!! TCTGTTTCTATGGGTCAAAG+TGG + chr8_1:69870070-69870089 Msa1210690:CDS 40.0%
ACAGCATGGATCTGCATAAA+CGG - chr8_1:69870187-69870206 None:intergenic 40.0%
TTCTAGCACAATCAACAGCA+TGG - chr8_1:69870201-69870220 None:intergenic 40.0%
CTTCTTGAGGGATAATGCTA+GGG - chr8_1:69870260-69870279 None:intergenic 40.0%
CCGACATTGTCAATTGAACT+AGG - chr8_1:69870412-69870431 None:intergenic 40.0%
! TTTTATCGGGTTCGAACCAA+GGG + chr8_1:69870450-69870469 Msa1210690:intron 40.0%
GTCAATGAATTCGGTTGTGT+GGG + chr8_1:69870870-69870889 Msa1210690:intron 40.0%
! TGTGTGGGTTGAAATATTGC+AGG + chr8_1:69870885-69870904 Msa1210690:intron 40.0%
!!! TGTATTGTGGGGACTAGTTT+TGG + chr8_1:69870940-69870959 Msa1210690:CDS 40.0%
TCATTTGTGACCCATTCTGT+TGG + chr8_1:69870964-69870983 Msa1210690:CDS 40.0%
!! GATGGTGGTTTTTGTAGTGG+TGG - chr8_1:69869497-69869516 None:intergenic 45.0%
! AGGTGATGATGAGAAGATGG+TGG - chr8_1:69869512-69869531 None:intergenic 45.0%
!! CATGTTGACTCACGTTTGCA+AGG + chr8_1:69869658-69869677 Msa1210690:CDS 45.0%
!! GTTTGGTGGGTGTTGTTGTT+GGG - chr8_1:69869724-69869743 None:intergenic 45.0%
!! TGTTTGGTGGGTGTTGTTGT+TGG - chr8_1:69869725-69869744 None:intergenic 45.0%
GTTTCTATGGGTCAAAGTGG+TGG + chr8_1:69870073-69870092 Msa1210690:CDS 45.0%
! GAGGGATAATGCTAGGGTTT+TGG - chr8_1:69870254-69870273 None:intergenic 45.0%
CCTTCTTGAGGGATAATGCT+AGG - chr8_1:69870261-69870280 None:intergenic 45.0%
CCTAGCATTATCCCTCAAGA+AGG + chr8_1:69870258-69870277 Msa1210690:CDS 45.0%
! CTTTTATCGGGTTCGAACCA+AGG + chr8_1:69870449-69870468 Msa1210690:intron 45.0%
!! TAGCTGTGTCCGAGTTTTAG+TGG + chr8_1:69870483-69870502 Msa1210690:intron 45.0%
GGTCAATGAATTCGGTTGTG+TGG + chr8_1:69870869-69870888 Msa1210690:intron 45.0%
CAGGAATTTGATGGGGTGTA+TGG + chr8_1:69870904-69870923 Msa1210690:intron 45.0%
TTTGTGACCCATTCTGTTGG+AGG + chr8_1:69870967-69870986 Msa1210690:CDS 45.0%
!! GATGGTGGTTTTTGTAGTGG+TGG - chr8_1:69869497-69869516 None:intergenic 45.0%
! AGGTGATGATGAGAAGATGG+TGG - chr8_1:69869512-69869531 None:intergenic 45.0%
!! CATGTTGACTCACGTTTGCA+AGG + chr8_1:69869658-69869677 Msa1210690:CDS 45.0%
!! GTTTGGTGGGTGTTGTTGTT+GGG - chr8_1:69869724-69869743 None:intergenic 45.0%
!! TGTTTGGTGGGTGTTGTTGT+TGG - chr8_1:69869725-69869744 None:intergenic 45.0%
GTTTCTATGGGTCAAAGTGG+TGG + chr8_1:69870073-69870092 Msa1210690:CDS 45.0%
! GAGGGATAATGCTAGGGTTT+TGG - chr8_1:69870254-69870273 None:intergenic 45.0%
CCTTCTTGAGGGATAATGCT+AGG - chr8_1:69870261-69870280 None:intergenic 45.0%
CCTAGCATTATCCCTCAAGA+AGG + chr8_1:69870258-69870277 Msa1210690:CDS 45.0%
! CTTTTATCGGGTTCGAACCA+AGG + chr8_1:69870449-69870468 Msa1210690:intron 45.0%
!! TAGCTGTGTCCGAGTTTTAG+TGG + chr8_1:69870483-69870502 Msa1210690:intron 45.0%
GGTCAATGAATTCGGTTGTG+TGG + chr8_1:69870869-69870888 Msa1210690:intron 45.0%
CAGGAATTTGATGGGGTGTA+TGG + chr8_1:69870904-69870923 Msa1210690:intron 45.0%
TTTGTGACCCATTCTGTTGG+AGG + chr8_1:69870967-69870986 Msa1210690:CDS 45.0%
TGCTTAGCTAAAGCAGGAGG+TGG - chr8_1:69869466-69869485 None:intergenic 50.0%
GGTTGCTTAGCTAAAGCAGG+AGG - chr8_1:69869469-69869488 None:intergenic 50.0%
GCATGGATCTGCATAAACGG+TGG - chr8_1:69870184-69870203 None:intergenic 50.0%
ACCAGCATGGCACTGTATTG+TGG + chr8_1:69870927-69870946 Msa1210690:CDS 50.0%
CCAGCATGGCACTGTATTGT+GGG + chr8_1:69870928-69870947 Msa1210690:CDS 50.0%
CAGCATGGCACTGTATTGTG+GGG + chr8_1:69870929-69870948 Msa1210690:CDS 50.0%
TGCTTAGCTAAAGCAGGAGG+TGG - chr8_1:69869466-69869485 None:intergenic 50.0%
GGTTGCTTAGCTAAAGCAGG+AGG - chr8_1:69869469-69869488 None:intergenic 50.0%
GCATGGATCTGCATAAACGG+TGG - chr8_1:69870184-69870203 None:intergenic 50.0%
ACCAGCATGGCACTGTATTG+TGG + chr8_1:69870927-69870946 Msa1210690:CDS 50.0%
CCAGCATGGCACTGTATTGT+GGG + chr8_1:69870928-69870947 Msa1210690:CDS 50.0%
CAGCATGGCACTGTATTGTG+GGG + chr8_1:69870929-69870948 Msa1210690:CDS 50.0%
! GCAGGAGGTGGATTTGTCTC+CGG - chr8_1:69869454-69869473 None:intergenic 55.0%
ATCGGGTTCGAACCAAGGGT+AGG + chr8_1:69870454-69870473 Msa1210690:intron 55.0%
TCGGGTTCGAACCAAGGGTA+GGG + chr8_1:69870455-69870474 Msa1210690:intron 55.0%
CAGCTACAAGACCCTACCCT+TGG - chr8_1:69870469-69870488 None:intergenic 55.0%
ATGGGGTGTATGGACCAGCA+TGG + chr8_1:69870914-69870933 Msa1210690:CDS 55.0%
CCCACAATACAGTGCCATGC+TGG - chr8_1:69870931-69870950 None:intergenic 55.0%
! GCAGGAGGTGGATTTGTCTC+CGG - chr8_1:69869454-69869473 None:intergenic 55.0%
ATCGGGTTCGAACCAAGGGT+AGG + chr8_1:69870454-69870473 Msa1210690:intron 55.0%
TCGGGTTCGAACCAAGGGTA+GGG + chr8_1:69870455-69870474 Msa1210690:intron 55.0%
CAGCTACAAGACCCTACCCT+TGG - chr8_1:69870469-69870488 None:intergenic 55.0%
ATGGGGTGTATGGACCAGCA+TGG + chr8_1:69870914-69870933 Msa1210690:CDS 55.0%
CCCACAATACAGTGCCATGC+TGG - chr8_1:69870931-69870950 None:intergenic 55.0%
TGTTTCGCCGGCGGGAAGAA+CGG - chr8_1:69869423-69869442 None:intergenic 60.0%
TTCTTCCCGCCGGCGAAACA+CGG + chr8_1:69869423-69869442 Msa1210690:CDS 60.0%
! GGAGGTGGATTTGTCTCCGG+TGG - chr8_1:69869451-69869470 None:intergenic 60.0%
TGTTTCGCCGGCGGGAAGAA+CGG - chr8_1:69869423-69869442 None:intergenic 60.0%
TTCTTCCCGCCGGCGAAACA+CGG + chr8_1:69869423-69869442 Msa1210690:CDS 60.0%
! GGAGGTGGATTTGTCTCCGG+TGG - chr8_1:69869451-69869470 None:intergenic 60.0%
TGGCACACCGTTCTTCCCGC+CGG + chr8_1:69869413-69869432 Msa1210690:CDS 65.0%
TGGCACACCGTTCTTCCCGC+CGG + chr8_1:69869413-69869432 Msa1210690:CDS 65.0%
!! TGGTGCCGTGTTTCGCCGGC+GGG - chr8_1:69869431-69869450 None:intergenic 70.0%
!! GTGGTGCCGTGTTTCGCCGG+CGG - chr8_1:69869432-69869451 None:intergenic 70.0%
!! CCGGTGGTGCCGTGTTTCGC+CGG - chr8_1:69869435-69869454 None:intergenic 70.0%
CCGGCGAAACACGGCACCAC+CGG + chr8_1:69869432-69869451 Msa1210690:CDS 70.0%
!! TGGTGCCGTGTTTCGCCGGC+GGG - chr8_1:69869431-69869450 None:intergenic 70.0%
!! GTGGTGCCGTGTTTCGCCGG+CGG - chr8_1:69869432-69869451 None:intergenic 70.0%
!! CCGGTGGTGCCGTGTTTCGC+CGG - chr8_1:69869435-69869454 None:intergenic 70.0%
CCGGCGAAACACGGCACCAC+CGG + chr8_1:69869432-69869451 Msa1210690:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 69869412 69871062 69869412 ID=Msa1210690;Name=Msa1210690
chr8_1 mRNA 69869412 69871062 69869412 ID=Msa1210690-mRNA-1;Parent=Msa1210690;Name=Msa1210690-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|3|0|289
chr8_1 exon 69869412 69869906 69869412 ID=Msa1210690-mRNA-1:exon:23332;Parent=Msa1210690-mRNA-1
chr8_1 exon 69870061 69870279 69870061 ID=Msa1210690-mRNA-1:exon:23333;Parent=Msa1210690-mRNA-1
chr8_1 exon 69870907 69871062 69870907 ID=Msa1210690-mRNA-1:exon:23334;Parent=Msa1210690-mRNA-1
chr8_1 CDS 69869412 69869906 69869412 ID=Msa1210690-mRNA-1:cds;Parent=Msa1210690-mRNA-1
chr8_1 CDS 69870061 69870279 69870061 ID=Msa1210690-mRNA-1:cds;Parent=Msa1210690-mRNA-1
chr8_1 CDS 69870907 69871062 69870907 ID=Msa1210690-mRNA-1:cds;Parent=Msa1210690-mRNA-1
Gene Sequence

>Msa1210690

ATGGCACACCGTTCTTCCCGCCGGCGAAACACGGCACCACCGGAGACAAATCCACCTCCTGCTTTAGCTAAGCAACCAAAACCCACCACTACAAAAACCACCATCTTCTCATCATCACCTTCACCTTCTCACTATCCAAAACCAAACCAAGATTTGATTCAAGCTACTAAATCTTCTTTTTTAGTTAAACCTTTTCAAAGTCTTAACTTAGGTAGCAAAAAAACCAAACAACATTCTCAAACCAAACATGTTGACTCACGTTTGCAAGGTAAATCCATGACAACCTCAGCTATATTTGATTCATCAAAACCCAACAACAACACCCACCAAACAAAAATCACAGTACTAACACCAAATCATGAAAAAGATAGTGTTTTTTTGCATTCTAAGAGGACCCTTAAAGAGAAACCACCTCAAAAACCTAGTTCAGAATTGGAAAAGTGGAAACTTCAGGGGTTGTTGAAGAATGAGAAAAAGGTGGTTGAGGATGTTAAGGAGAGAGTTTCTGTTTCTATGGGTCAAAGTGGTGGTAGAAGAAAATCGTTATGTGGGTCAATGATTGATTTAGGTGATTTCTTTGCAATTAATGGAGCAAAAATGGTTTCAGCTGATATGCCACCGTTTATGCAGATCCATGCTGTTGATTGTGCTAGAAAAGCTTTTGATAGTATGGAGAAATTCACTTCCAAAACCCTAGCATTATCCCTCAAGAAGGAATTTGATGGGGTGTATGGACCAGCATGGCACTGTATTGTGGGGACTAGTTTTGGATCATTTGTGACCCATTCTGTTGGAGGATTTCTATATTTCTCAATGGATCAAAAATTGTACATCCTTATATTCAAGACTGCTGTACAAAAAGCAGATTGA

Protein sequence

>Msa1210690

MAHRSSRRRNTAPPETNPPPALAKQPKPTTTKTTIFSSSPSPSHYPKPNQDLIQATKSSFLVKPFQSLNLGSKKTKQHSQTKHVDSRLQGKSMTTSAIFDSSKPNNNTHQTKITVLTPNHEKDSVFLHSKRTLKEKPPQKPSSELEKWKLQGLLKNEKKVVEDVKERVSVSMGQSGGRRKSLCGSMIDLGDFFAINGAKMVSADMPPFMQIHAVDCARKAFDSMEKFTSKTLALSLKKEFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILIFKTAVQKAD*