AlfalfaGEDB | Msa1259530

M. sativa cultivar zhongmu-4 / Msa1259530

KEGG: K10418
GO: GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008092 GO:0008150 GO:0009987 GO:0010970 GO:0015630 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582
PFAM: PF01221.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1259530	XP_013457854.1	96.795	312	4	3	70	380	1	307	0.0	609

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1259530	sp\|Q86A88\|DYL_DICDI	50.602	83	38	2	293	375	12	91	2.94e-20	87.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1259530	A0A072V1C9	96.795	312	4	3	70	380	1	307	0.0	609

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0010490	Msa1259530	0.824357	8.433398e-54	-8.615850e-47
Msa0010500	Msa1259530	0.811044	8.523976e-51	-8.615850e-47
Msa0015090	Msa1259530	0.806398	8.389021e-50	-8.615850e-47
Msa0017320	Msa1259530	0.851945	6.373523e-61	-8.615850e-47
Msa0038870	Msa1259530	0.817952	2.525214e-52	-8.615850e-47
Msa0049750	Msa1259530	0.803227	3.854124e-49	-8.615850e-47
Msa0052860	Msa1259530	0.809910	1.498314e-50	-8.615850e-47
Msa0065650	Msa1259530	0.834371	3.115421e-56	-8.615850e-47
Msa0086420	Msa1259530	0.800057	1.722538e-48	-8.615850e-47
Msa0095360	Msa1259530	0.815059	1.122404e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1259530	MtrunA17_Chr4g0059791	96.795	312	4	3	70	380	1	307	0.0	609
Msa1259530	MtrunA17_Chr4g0063491	65.934	91	30	1	289	379	154	243	5.46e-38	137
Msa1259530	MtrunA17_Chr8g0391451	62.626	99	34	2	284	380	49	146	2.83e-36	129
Msa1259530	MtrunA17_Chr4g0067531	52.439	82	36	2	293	374	51	129	2.57e-20	85.9
Msa1259530	MtrunA17_Chr2g0331651	46.067	89	46	2	286	373	2	89	7.19e-20	83.6
Msa1259530	MtrunA17_Chr8g0360861	50.633	79	38	1	295	373	12	89	1.48e-17	77.8
Msa1259530	MtrunA17_Chr6g0485891	44.444	81	44	1	295	375	46	125	1.05e-15	73.2
Msa1259530	MtrunA17_Chr1g0160981	45.946	74	38	1	287	358	51	124	3.40e-13	66.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1259530	AT5G20110.1	54.918	122	48	2	264	379	86	206	2.65e-38	137
Msa1259530	AT1G23220.1	53.763	93	41	2	289	380	36	127	1.56e-26	103
Msa1259530	AT1G52245.1	46.154	91	47	2	286	375	2	91	1.17e-18	80.9
Msa1259530	AT3G16120.2	47.126	87	45	1	289	375	6	91	1.77e-18	80.1
Msa1259530	AT3G16120.1	47.126	87	45	1	289	375	6	91	1.77e-18	80.1
Msa1259530	AT4G15930.1	47.727	88	41	3	289	375	40	123	3.87e-16	74.7
Msa1259530	AT4G27360.1	46.591	88	46	1	289	376	6	92	6.27e-16	73.6

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Find 115 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGGTGGTGATGTTA+AGG	0.409989	8_2:-61213036	Msa1259530:CDS
AAAAGCAGATTGAAGGAAGG+TGG	0.627500	8_2:-61211983	Msa1259530:exon
AAACTGCAACATCTGTGACT+GGG	0.626950	8_2:+61211525	None:intergenic
AAAGAACATGGAGAAGAGGA+AGG	0.575464	8_2:+61213747	None:intergenic
AAAGGTGGTTGAGGATGTTA+AGG	0.409778	8_2:-61213090	Msa1259530:CDS
AAATATAGCTGAGGTTGTCA+TGG	0.552151	8_2:+61213289	None:intergenic
AAATATTGCAGGAATTTGAT+GGG	0.521597	8_2:-61212137	Msa1259530:intron
AAGCATAAGCCAATGTACAA+AGG	0.654076	8_2:+61211875	None:intergenic
AATATTGCAGGAATTTGATG+GGG	0.687792	8_2:-61212136	Msa1259530:intron
AATCATGATAAGACAAACAA+AGG	0.539853	8_2:+61211836	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAAGTGGTAAAGTGTATT+GGG	+	chr8_2:61211652-61211671	None:intergenic	30.0%
TAGAAAGTGGTAAAGTGTAT+TGG	+	chr8_2:61211653-61211672	None:intergenic	30.0%
TGGAGAAAGATAGAAGAAAA+GGG	+	chr8_2:61211685-61211704	None:intergenic	30.0%
TAGTAGCTTGAATCAAATCT+TGG	+	chr8_2:61211934-61211953	None:intergenic	30.0%
TGATGAATCAAATATAGCTG+AGG	+	chr8_2:61212071-61212090	None:intergenic	30.0%
TCAAAAACCTAGTTCAGAAT+TGG	-	chr8_2:61212198-61212217	Msa1259530:intron	30.0%
GTTGTTGAAGAATGAGAAAA+AGG	-	chr8_2:61212240-61212259	Msa1259530:intron	30.0%
GTCAAAAAAAGTAACTGTTG+TGG	-	chr8_2:61212288-61212307	Msa1259530:intron	30.0%
GTAGAAGAAAATCGTTATGT+GGG	-	chr8_2:61212380-61212399	Msa1259530:intron	30.0%
GGTGATTTCTTTGCAATTAA+TGG	-	chr8_2:61212418-61212437	Msa1259530:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	61211435	61213935	61211435	ID=Msa1259530;Name=Msa1259530
chr8_2	mRNA	61211435	61213935	61211435	ID=Msa1259530-mRNA-1;Parent=Msa1259530;Name=Msa1259530-mRNA-1;_AED=0.01;_eAED=0.01;_QI=143\|1\|1\|1\|1\|1\|2\|558\|380
chr8_2	exon	61211435	61212148	61211435	ID=Msa1259530-mRNA-1:exon:19253;Parent=Msa1259530-mRNA-1
chr8_2	exon	61212806	61213935	61212806	ID=Msa1259530-mRNA-1:exon:19252;Parent=Msa1259530-mRNA-1
chr8_2	five_prime_UTR	61213793	61213935	61213793	ID=Msa1259530-mRNA-1:five_prime_utr;Parent=Msa1259530-mRNA-1
chr8_2	CDS	61212806	61213792	61212806	ID=Msa1259530-mRNA-1:cds;Parent=Msa1259530-mRNA-1
chr8_2	CDS	61211993	61212148	61211993	ID=Msa1259530-mRNA-1:cds;Parent=Msa1259530-mRNA-1
chr8_2	three_prime_UTR	61211435	61211992	61211435	ID=Msa1259530-mRNA-1:three_prime_utr;Parent=Msa1259530-mRNA-1

Gene Sequence

>Msa1259530

ATGAACAGTTTCAAGCAAAGTTACCTTCCTCTTCTCCATGTTCTTTCCCCAACAACACCTAGAAAAGCTAACCCAATACACTTTACCACTTTCTACTTCTATAACCCTTTTCTTCTATCTTTCTCCACAACAAAACAAAACCACCCAAAAACCAAAAAATATCATACTACTAAAACAGAATATTGCTATTTGCACCGTCTATTCAACATGGCACACCGTTCTTCCCGCCGGCGAAACACGGCACCACCGGAGACAAATCCACCTCCTGCTTTAGCTAAGCAACCAAAACCCACCACCACAAAAACCACCATCTTCTCATCATCACCTTCACCTTCTCACTATCCAAAACCAAACCAAGATTTGATTCAAGCTACTAAATCTTCTTTTTTAGTTAAACCTTTTCAAAGTCTTAACTTAGGTAGCAAAAAAACCAAACAACATTCTCAAACCAAACATGTTGACTCACGTTTGCAAGGTAAATCCATGACAACCTCAGCTATATTTGATTCATCAAAACCCAACAACAACACCCACCAAACAAAAATCACAGTACTAACACCAAATCATGAAAAAGATAGTGTTTTTTTGCATTCTAAGAGGACCCTTAAAGAGAAACCACCTCAAAAACCTAGTTCAGAATTGGAAAAGTGGAAACTTCAGGGGTTGTTGAAGAATGAGAAAAAGGTGGTTGAGGATGTTAAGGTTGAAAAGTCAAAAAAAGTAACTGTTGTGGAAAAAGAAGGTGGTGATGTTAAGGAGAGAGTTTCTGTTTCTATGGGTCAAAGTGGTGGTGGAGGTGGTGGTAGAAGAAAATCGTTATGTGGGTCAATGATTGATTTAGGTGATTTCTTTGCAATTAATGGAGCAAAAATGGTTTCAGCTGATATGCCACCGTTTATGCAGATCCATGCTGTTGATTGTGCTAGAAAAGCTTTTGATAGTATGGAGAAATTCACTTCCAAAACCCTAGCATTATCCCTCAAGAAGGAATTTGATGGGGTGTATGGACCAGCATGGCACTGTATTGTGGGGACTAGTTTTGGATCATTTGTGACCCATTCTGTTGGAGGATTTCTATATTTCTCAATGGATCAAAAATTGTACATCCTTATATTTAAGACTGCTGTACAAAAAGCAGATTGA

Protein sequence

>Msa1259530

MNSFKQSYLPLLHVLSPTTPRKANPIHFTTFYFYNPFLLSFSTTKQNHPKTKKYHTTKTEYCYLHRLFNMAHRSSRRRNTAPPETNPPPALAKQPKPTTTKTTIFSSSPSPSHYPKPNQDLIQATKSSFLVKPFQSLNLGSKKTKQHSQTKHVDSRLQGKSMTTSAIFDSSKPNNNTHQTKITVLTPNHEKDSVFLHSKRTLKEKPPQKPSSELEKWKLQGLLKNEKKVVEDVKVEKSKKVTVVEKEGGDVKERVSVSMGQSGGGGGGRRKSLCGSMIDLGDFFAINGAKMVSADMPPFMQIHAVDCARKAFDSMEKFTSKTLALSLKKEFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILIFKTAVQKAD*