Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1360220 | XP_013457854.1 | 97.115 | 312 | 3 | 3 | 69 | 379 | 1 | 307 | 0.0 | 611 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1360220 | sp|Q86A88|DYL_DICDI | 50.602 | 83 | 38 | 2 | 292 | 374 | 12 | 91 | 2.71e-20 | 87.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1360220 | A0A072V1C9 | 97.115 | 312 | 3 | 3 | 69 | 379 | 1 | 307 | 0.0 | 611 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1259530 | Msa1360220 | 0.861749 | 8.241151e-64 | -8.615850e-47 |
| Msa1299250 | Msa1360220 | 0.830208 | 3.343244e-55 | -8.615850e-47 |
| Msa1210690 | Msa1360220 | 0.927852 | 6.588516e-92 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1360220 | MtrunA17_Chr4g0059791 | 97.115 | 312 | 3 | 3 | 69 | 379 | 1 | 307 | 0.0 | 611 |
| Msa1360220 | MtrunA17_Chr4g0063491 | 65.934 | 91 | 30 | 1 | 288 | 378 | 154 | 243 | 6.00e-38 | 136 |
| Msa1360220 | MtrunA17_Chr8g0391451 | 62.626 | 99 | 34 | 2 | 283 | 379 | 49 | 146 | 3.22e-36 | 129 |
| Msa1360220 | MtrunA17_Chr4g0067531 | 52.439 | 82 | 36 | 2 | 292 | 373 | 51 | 129 | 2.62e-20 | 85.9 |
| Msa1360220 | MtrunA17_Chr2g0331651 | 46.067 | 89 | 46 | 2 | 285 | 372 | 2 | 89 | 7.13e-20 | 83.6 |
| Msa1360220 | MtrunA17_Chr8g0360861 | 50.633 | 79 | 38 | 1 | 294 | 372 | 12 | 89 | 1.47e-17 | 77.8 |
| Msa1360220 | MtrunA17_Chr6g0485891 | 44.444 | 81 | 44 | 1 | 294 | 374 | 46 | 125 | 1.05e-15 | 73.2 |
| Msa1360220 | MtrunA17_Chr1g0160981 | 45.946 | 74 | 38 | 1 | 286 | 357 | 51 | 124 | 3.42e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1360220 | AT5G20110.1 | 54.918 | 122 | 48 | 2 | 263 | 378 | 86 | 206 | 2.51e-38 | 137 |
| Msa1360220 | AT1G23220.1 | 53.763 | 93 | 41 | 2 | 288 | 379 | 36 | 127 | 1.62e-26 | 103 |
| Msa1360220 | AT3G16120.2 | 47.126 | 87 | 45 | 1 | 288 | 374 | 6 | 91 | 2.76e-19 | 82.4 |
| Msa1360220 | AT3G16120.1 | 47.126 | 87 | 45 | 1 | 288 | 374 | 6 | 91 | 2.76e-19 | 82.4 |
| Msa1360220 | AT1G52245.1 | 46.154 | 91 | 47 | 2 | 285 | 374 | 2 | 91 | 3.88e-19 | 82.0 |
| Msa1360220 | AT4G15930.1 | 47.727 | 88 | 41 | 3 | 288 | 374 | 40 | 123 | 2.43e-18 | 80.9 |
| Msa1360220 | AT4G27360.1 | 46.591 | 88 | 46 | 1 | 288 | 375 | 6 | 92 | 5.76e-16 | 73.6 |
Find 115 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAGGTGGTTTCTCTTTA+AGG | 0.077615 | tig0016958:+15605 | None:intergenic |
| GGTGATTTCTTTGCAATTAA+TGG | 0.140558 | tig0016958:-15367 | Msa1360220:CDS |
| CAAATTTGATTTCAGTTAAA+AGG | 0.179677 | tig0016958:+14017 | None:intergenic |
| TTGAAGGAAGGTGGTGAATT+TGG | 0.212017 | tig0016958:-14411 | Msa1360220:exon |
| ATCAAATCTTGGTTTGGTTT+TGG | 0.235547 | tig0016958:+15865 | None:intergenic |
| TGTATTGTGGGGACTAGTTT+TGG | 0.238004 | tig0016958:-14530 | Msa1360220:CDS |
| GTACAGCAGTCTTAAATATA+AGG | 0.257882 | tig0016958:+14444 | None:intergenic |
| GGAGAGAGTTTCTGTTTCTA+TGG | 0.258173 | tig0016958:-15452 | Msa1360220:CDS |
| TTGAGGTGGTTTCTCTTTAA+GGG | 0.259606 | tig0016958:+15606 | None:intergenic |
| TGTGGGTCAATGATTGATTT+AGG | 0.289700 | tig0016958:-15388 | Msa1360220:CDS |
| GAGGGATAATGCTAGGGTTT+TGG | 0.302500 | tig0016958:+15249 | None:intergenic |
| ACACAAGTTGAGTGTTGTTT+TGG | 0.323811 | tig0016958:+16258 | None:intergenic |
| ATTGGAAAAGTGGAAACTTC+AGG | 0.346164 | tig0016958:-15569 | Msa1360220:CDS |
| ATGGTTAAAATATATTTGTT+TGG | 0.352573 | tig0016958:-13885 | Msa1360220:three_prime_UTR |
| TTTGTCATAGAAAGGTAAAA+AGG | 0.362261 | tig0016958:-14351 | Msa1360220:three_prime_UTR |
| TGTTTGGTGGGTGTTGTTGT+TGG | 0.366216 | tig0016958:+15690 | None:intergenic |
| CAAACGTGAGTCAACATGTT+TGG | 0.366632 | tig0016958:+15759 | None:intergenic |
| GGTCAAAGTGGTGGTGGTGG+TGG | 0.385362 | tig0016958:-15430 | Msa1360220:CDS |
| TTAGTGCATGTTTAATTTGA+CGG | 0.394063 | tig0016958:+14154 | None:intergenic |
| GTGGAGAAAGATAGAAGAAA+AGG | 0.396037 | tig0016958:+16099 | None:intergenic |
| GTTTGGTGGGTGTTGTTGTT+GGG | 0.396439 | tig0016958:+15691 | None:intergenic |
| GAAATATTGCAGGAATTTGA+TGG | 0.396694 | tig0016958:-14575 | Msa1360220:intron |
| TAGAAAGTGGTAAAGTGTAT+TGG | 0.402477 | tig0016958:+16132 | None:intergenic |
| CGCCAAGGGGTGTGTGTGTT+GGG | 0.404458 | tig0016958:+16291 | None:intergenic |
| AGAAAGTGGTAAAGTGTATT+GGG | 0.405132 | tig0016958:+16133 | None:intergenic |
| ACAGAAGATGAAACGAATTT+CGG | 0.408803 | tig0016958:-14380 | Msa1360220:three_prime_UTR |
| AAAGGTGGTTGAGGATGTTA+AGG | 0.409778 | tig0016958:-15527 | Msa1360220:CDS |
| AAAAGAAGGTGGTGATGTTA+AGG | 0.409989 | tig0016958:-15473 | Msa1360220:CDS |
| TTAGCTTATATAATTTCATA+TGG | 0.416274 | tig0016958:-13904 | Msa1360220:three_prime_UTR |
| ATCATGATAAGACAAACAAA+GGG | 0.417190 | tig0016958:+14274 | None:intergenic |
| GATTGTACAATAATTAGAAC+TGG | 0.418704 | tig0016958:-13995 | Msa1360220:three_prime_UTR |
| CAGGAATTTGATGGGGTGTA+TGG | 0.421928 | tig0016958:-14566 | Msa1360220:CDS |
| GGTATAGATTTGTCATAGAA+AGG | 0.426753 | tig0016958:-14359 | Msa1360220:three_prime_UTR |
| GCTTGAATCAAATCTTGGTT+TGG | 0.433215 | tig0016958:+15859 | None:intergenic |
| TAGTAGCTTGAATCAAATCT+TGG | 0.435025 | tig0016958:+15854 | None:intergenic |
| TATGAAGGCTATGTAACTAA+TGG | 0.444710 | tig0016958:-14114 | Msa1360220:three_prime_UTR |
| GTTGTTGAAGAATGAGAAAA+AGG | 0.446134 | tig0016958:-15545 | Msa1360220:CDS |
| TTTGGTTTGAGAATGTTGTT+TGG | 0.446853 | tig0016958:+15777 | None:intergenic |
| CCGGCGAAACACGGCACCAC+CGG | 0.446993 | tig0016958:-15980 | Msa1360220:CDS |
| ATGGGTCAAAGTGGTGGTGG+TGG | 0.459217 | tig0016958:-15433 | Msa1360220:CDS |
| TTGGAAAAGTGGAAACTTCA+GGG | 0.459465 | tig0016958:-15568 | Msa1360220:CDS |
| GCGCCAAGGGGTGTGTGTGT+TGG | 0.469937 | tig0016958:+16290 | None:intergenic |
| AGGATTTCTATATTTCTCAA+TGG | 0.472685 | tig0016958:-14483 | Msa1360220:CDS |
| ACATTGCTGTATTGTAGCAT+TGG | 0.475963 | tig0016958:-14201 | Msa1360220:three_prime_UTR |
| CCTTCTTGAGGGATAATGCT+AGG | 0.479039 | tig0016958:+15242 | None:intergenic |
| TTTGTGACCCATTCTGTTGG+AGG | 0.480594 | tig0016958:-14503 | Msa1360220:CDS |
| TGGTGCCGTGTTTCGCCGGC+GGG | 0.480858 | tig0016958:+15984 | None:intergenic |
| ACAGCATGGATCTGCATAAA+CGG | 0.483580 | tig0016958:+15316 | None:intergenic |
| TATGAATTATACCTTCTTGA+GGG | 0.489208 | tig0016958:+15231 | None:intergenic |
| TTTGGTTGCTTAGCTAAAGC+AGG | 0.490079 | tig0016958:+15943 | None:intergenic |
| TCATTTGTGACCCATTCTGT+TGG | 0.494391 | tig0016958:-14506 | Msa1360220:CDS |
| CTTCTTGAGGGATAATGCTA+GGG | 0.494928 | tig0016958:+15243 | None:intergenic |
| CCGGTGGTGCCGTGTTTCGC+CGG | 0.500458 | tig0016958:+15980 | None:intergenic |
| AGACTTACTTGAAGATATGA+AGG | 0.504395 | tig0016958:-14129 | Msa1360220:three_prime_UTR |
| TAAACTGCAACATCTGTGAC+TGG | 0.504532 | tig0016958:+13961 | None:intergenic |
| CCAGCATGGCACTGTATTGT+GGG | 0.504817 | tig0016958:-14542 | Msa1360220:CDS |
| TAGAAATCCTCCAACAGAAT+GGG | 0.505407 | tig0016958:+14496 | None:intergenic |
| GAGAGAGTTTCTGTTTCTAT+GGG | 0.506756 | tig0016958:-15451 | Msa1360220:CDS |
| TGCTTAGCTAAAGCAGGAGG+TGG | 0.509007 | tig0016958:+15949 | None:intergenic |
| GGGATATGACACATGAATGT+AGG | 0.509486 | tig0016958:+16311 | None:intergenic |
| CCTAAGTTAAGACTTTGAAA+AGG | 0.512023 | tig0016958:+15811 | None:intergenic |
| CTAGTTCAGAATTGGAAAAG+TGG | 0.512540 | tig0016958:-15579 | Msa1360220:CDS |
| CATGTTGACTCACGTTTGCA+AGG | 0.516215 | tig0016958:-15754 | Msa1360220:CDS |
| TAGAAACATCCTTTGTACAT+TGG | 0.518235 | tig0016958:-14321 | Msa1360220:three_prime_UTR |
| TGGAGAAAGATAGAAGAAAA+GGG | 0.519020 | tig0016958:+16100 | None:intergenic |
| TGTTTCGCCGGCGGGAAGAA+CGG | 0.519846 | tig0016958:+15992 | None:intergenic |
| AAATATTGCAGGAATTTGAT+GGG | 0.521597 | tig0016958:-14574 | Msa1360220:intron |
| ATGATTCTAACCATGCACTT+AGG | 0.523566 | tig0016958:+14242 | None:intergenic |
| GGTAGAAGAAAATCGTTATG+TGG | 0.525728 | tig0016958:-15406 | Msa1360220:CDS |
| ATCCCAACACACACACCCCT+TGG | 0.528878 | tig0016958:-16293 | Msa1360220:five_prime_UTR |
| GGGGAAAGAACATGGAGAAG+AGG | 0.532950 | tig0016958:+16177 | None:intergenic |
| TCTATGGGTCAAAGTGGTGG+TGG | 0.537716 | tig0016958:-15436 | Msa1360220:CDS |
| CCCACAATACAGTGCCATGC+TGG | 0.538117 | tig0016958:+14542 | None:intergenic |
| AATCATGATAAGACAAACAA+AGG | 0.539853 | tig0016958:+14273 | None:intergenic |
| ATATGAATTATACCTTCTTG+AGG | 0.545883 | tig0016958:+15230 | None:intergenic |
| GGATATGACACATGAATGTA+GGG | 0.546914 | tig0016958:+16312 | None:intergenic |
| ATAGAAATCCTCCAACAGAA+TGG | 0.547634 | tig0016958:+14495 | None:intergenic |
| AGGGTTATAGAAGTAGAAAG+TGG | 0.550364 | tig0016958:+16119 | None:intergenic |
| AAATATAGCTGAGGTTGTCA+TGG | 0.552151 | tig0016958:+15726 | None:intergenic |
| GCAGGAGGTGGATTTGTCTC+CGG | 0.556923 | tig0016958:+15961 | None:intergenic |
| TTCTTCCCGCCGGCGAAACA+CGG | 0.557264 | tig0016958:-15989 | Msa1360220:CDS |
| GTGGTGCCGTGTTTCGCCGG+CGG | 0.566812 | tig0016958:+15983 | None:intergenic |
| GCAACAATTGTGACCACCGT+TGG | 0.572684 | tig0016958:+14065 | None:intergenic |
| GTGTTGTTGGGGAAAGAACA+TGG | 0.574339 | tig0016958:+16169 | None:intergenic |
| TTCTAGCACAATCAACAGCA+TGG | 0.575374 | tig0016958:+15302 | None:intergenic |
| AAAGAACATGGAGAAGAGGA+AGG | 0.575464 | tig0016958:+16181 | None:intergenic |
| GTTTCTATGGGTCAAAGTGG+TGG | 0.577482 | tig0016958:-15439 | Msa1360220:CDS |
| ACCAGCATGGCACTGTATTG+TGG | 0.577524 | tig0016958:-14543 | Msa1360220:CDS |
| CCTAGCATTATCCCTCAAGA+AGG | 0.579726 | tig0016958:-15242 | Msa1360220:intron |
| TGAAGGTGATGATGAGAAGA+TGG | 0.583761 | tig0016958:+15900 | None:intergenic |
| GTCAAGAAAAGTAACTGTTG+TGG | 0.586769 | tig0016958:-15497 | Msa1360220:CDS |
| GTAGAAGAAAATCGTTATGT+GGG | 0.594942 | tig0016958:-15405 | Msa1360220:CDS |
| CACACGTAAGTGCTAGTCAA+AGG | 0.609844 | tig0016958:-16343 | Msa1360220:five_prime_UTR |
| TCTGTTTCTATGGGTCAAAG+TGG | 0.611585 | tig0016958:-15442 | Msa1360220:CDS |
| TGATGAATCAAATATAGCTG+AGG | 0.614815 | tig0016958:+15717 | None:intergenic |
| GGAGGTGGATTTGTCTCCGG+TGG | 0.623941 | tig0016958:+15964 | None:intergenic |
| AAACTGCAACATCTGTGACT+GGG | 0.626950 | tig0016958:+13962 | None:intergenic |
| AAAAGCAGATTGAAGGAAGG+TGG | 0.627500 | tig0016958:-14420 | Msa1360220:exon |
| TGGCACACCGTTCTTCCCGC+CGG | 0.632791 | tig0016958:-15999 | Msa1360220:CDS |
| GTAATCAACATTATATCCAA+CGG | 0.635891 | tig0016958:-14081 | Msa1360220:three_prime_UTR |
| GGTTGCTTAGCTAAAGCAGG+AGG | 0.641795 | tig0016958:+15946 | None:intergenic |
| CAGCATGGCACTGTATTGTG+GGG | 0.649093 | tig0016958:-14541 | Msa1360220:CDS |
| AAGCATAAGCCAATGTACAA+AGG | 0.654076 | tig0016958:+14312 | None:intergenic |
| TGGAAAAGTGGAAACTTCAG+GGG | 0.656471 | tig0016958:-15567 | Msa1360220:CDS |
| TTTGGATAGTGAGAAGGTGA+AGG | 0.666862 | tig0016958:+15883 | None:intergenic |
| GGTGTGCCATGTTGAATAGA+CGG | 0.676331 | tig0016958:+16013 | None:intergenic |
| TCATTAGATTGAGACTTGTG+CGG | 0.683098 | tig0016958:+16223 | None:intergenic |
| AGGTGATGATGAGAAGATGG+TGG | 0.684245 | tig0016958:+15903 | None:intergenic |
| TTTGCACCGTCTATTCAACA+TGG | 0.687135 | tig0016958:-16019 | Msa1360220:CDS |
| AATATTGCAGGAATTTGATG+GGG | 0.687792 | tig0016958:-14573 | Msa1360220:intron |
| TCATGATAAGACAAACAAAG+GGG | 0.706871 | tig0016958:+14275 | None:intergenic |
| ATCAACATTATATCCAACGG+TGG | 0.711161 | tig0016958:-14078 | Msa1360220:three_prime_UTR |
| CATGATAAGACAAACAAAGG+GGG | 0.713361 | tig0016958:+14276 | None:intergenic |
| GCATGGATCTGCATAAACGG+TGG | 0.717762 | tig0016958:+15319 | None:intergenic |
| ATGGGGTGTATGGACCAGCA+TGG | 0.734479 | tig0016958:-14556 | Msa1360220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGATATTTTTTGGTTTTT+GGG | + | tig0016958:14161-14180 | None:intergenic | 15.0% |
| !!! | TGTTTTAGTATGATATTTTT+TGG | + | tig0016958:14169-14188 | None:intergenic | 15.0% |
| !! | TTAGCTTATATAATTTCATA+TGG | - | tig0016958:16315-16334 | Msa1360220:five_prime_UTR | 15.0% |
| !! | ATGGTTAAAATATATTTGTT+TGG | - | tig0016958:16334-16353 | Msa1360220:five_prime_UTR | 15.0% |
| !!! | GTATGATATTTTTTGGTTTT+TGG | + | tig0016958:14162-14181 | None:intergenic | 20.0% |
| !!! | AGTTTTGAATGAATTGATTA+TGG | - | tig0016958:15107-15126 | Msa1360220:intron | 20.0% |
| !!! | ATGTAGACAAAATTTGATTT+GGG | + | tig0016958:15335-15354 | None:intergenic | 20.0% |
| !!! | TCAAATCATTTTGCTAAATT+TGG | + | tig0016958:15445-15464 | None:intergenic | 20.0% |
| !!! | TTATAATGATTTTCTTTAGG+AGG | + | tig0016958:15516-15535 | None:intergenic | 20.0% |
| !!! | CGTTTATAATGATTTTCTTT+AGG | + | tig0016958:15519-15538 | None:intergenic | 20.0% |
| !! | AAAGAAAATCATTATAAACG+TGG | - | tig0016958:15519-15538 | Msa1360220:CDS | 20.0% |
| !!! | TTTTGCATTAGGAATAATTT+AGG | - | tig0016958:15547-15566 | Msa1360220:CDS | 20.0% |
| !! | TTTGCATTAGGAATAATTTA+GGG | - | tig0016958:15548-15567 | Msa1360220:CDS | 20.0% |
| !!! | TGAATATTTTAGTGAATGAT+TGG | - | tig0016958:15597-15616 | Msa1360220:CDS | 20.0% |
| !!! | CAAATTTGATTTCAGTTAAA+AGG | + | tig0016958:16205-16224 | None:intergenic | 20.0% |
| !! | TTAGTACTGTGATTTTTGTT+TGG | + | tig0016958:14548-14567 | None:intergenic | 25.0% |
| !!! | ACACTATCTTTTTCATGATT+TGG | + | tig0016958:14573-14592 | None:intergenic | 25.0% |
| !!! | TAGAAAAGCTTTTGATAGTA+TGG | - | tig0016958:14935-14954 | Msa1360220:intron | 25.0% |
| ! | TATGAATTATACCTTCTTGA+GGG | + | tig0016958:14991-15010 | None:intergenic | 25.0% |
| ! | ATATGAATTATACCTTCTTG+AGG | + | tig0016958:14992-15011 | None:intergenic | 25.0% |
| ! | CATGTAGACAAAATTTGATT+TGG | + | tig0016958:15336-15355 | None:intergenic | 25.0% |
| !!! | ACTTACATTCAAGTCATTTT+GGG | + | tig0016958:15359-15378 | None:intergenic | 25.0% |
| !! | TCATTTTGCTAAATTTGGAT+CGG | + | tig0016958:15440-15459 | None:intergenic | 25.0% |
| ! | AAATATTGCAGGAATTTGAT+GGG | - | tig0016958:15645-15664 | Msa1360220:CDS | 25.0% |
| ! | AGGATTTCTATATTTCTCAA+TGG | - | tig0016958:15736-15755 | Msa1360220:CDS | 25.0% |
| ! | TTTGTCATAGAAAGGTAAAA+AGG | - | tig0016958:15868-15887 | Msa1360220:CDS | 25.0% |
| ! | ATCATGATAAGACAAACAAA+GGG | + | tig0016958:15948-15967 | None:intergenic | 25.0% |
| ! | AATCATGATAAGACAAACAA+AGG | + | tig0016958:15949-15968 | None:intergenic | 25.0% |
| !!! | TTAGTGCATGTTTAATTTGA+CGG | + | tig0016958:16068-16087 | None:intergenic | 25.0% |
| ! | GTAATCAACATTATATCCAA+CGG | - | tig0016958:16138-16157 | Msa1360220:CDS | 25.0% |
| ! | GATTGTACAATAATTAGAAC+TGG | - | tig0016958:16224-16243 | Msa1360220:exon | 25.0% |
| AGAAAGTGGTAAAGTGTATT+GGG | + | tig0016958:14089-14108 | None:intergenic | 30.0% | |
| TAGAAAGTGGTAAAGTGTAT+TGG | + | tig0016958:14090-14109 | None:intergenic | 30.0% | |
| TGGAGAAAGATAGAAGAAAA+GGG | + | tig0016958:14122-14141 | None:intergenic | 30.0% | |
| !!! | GATATTTTTTGGTTTTTGGG+TGG | + | tig0016958:14158-14177 | None:intergenic | 30.0% |
| !!! | ATCAAATCTTGGTTTGGTTT+TGG | + | tig0016958:14357-14376 | None:intergenic | 30.0% |
| TAGTAGCTTGAATCAAATCT+TGG | + | tig0016958:14368-14387 | None:intergenic | 30.0% | |
| ! | CCTAAGTTAAGACTTTGAAA+AGG | + | tig0016958:14411-14430 | None:intergenic | 30.0% |
| ! | CCTTTTCAAAGTCTTAACTT+AGG | - | tig0016958:14408-14427 | Msa1360220:three_prime_UTR | 30.0% |
| !! | TTTGGTTTGAGAATGTTGTT+TGG | + | tig0016958:14445-14464 | None:intergenic | 30.0% |
| TGATGAATCAAATATAGCTG+AGG | + | tig0016958:14505-14524 | None:intergenic | 30.0% | |
| !! | TACTGTGATTTTTGTTTGGT+GGG | + | tig0016958:14544-14563 | None:intergenic | 30.0% |
| !!! | GTGTTTTTTTGCATTCTAAG+AGG | - | tig0016958:14589-14608 | Msa1360220:intron | 30.0% |
| ! | AATTCTGAACTAGGTTTTTG+AGG | + | tig0016958:14633-14652 | None:intergenic | 30.0% |
| TCAAAAACCTAGTTCAGAAT+TGG | - | tig0016958:14632-14651 | Msa1360220:intron | 30.0% | |
| GTTGTTGAAGAATGAGAAAA+AGG | - | tig0016958:14674-14693 | Msa1360220:intron | 30.0% | |
| GTAGAAGAAAATCGTTATGT+GGG | - | tig0016958:14814-14833 | Msa1360220:intron | 30.0% | |
| GGTGATTTCTTTGCAATTAA+TGG | - | tig0016958:14852-14871 | Msa1360220:intron | 30.0% | |
| TGCAATTAATGGTGCAAAAA+TGG | - | tig0016958:14863-14882 | Msa1360220:intron | 30.0% | |
| ! | GTTAGACTTGACACTTTTAT+CGG | - | tig0016958:15185-15204 | Msa1360220:intron | 30.0% |
| ! | TTAGACTTGACACTTTTATC+GGG | - | tig0016958:15186-15205 | Msa1360220:intron | 30.0% |
| ! | CACTTACATTCAAGTCATTT+TGG | + | tig0016958:15360-15379 | None:intergenic | 30.0% |
| GTGTATGTTTGAATTTAGTG+TGG | - | tig0016958:15377-15396 | Msa1360220:CDS | 30.0% | |
| ! | ATTTTGCTAAATTTGGATCG+GGG | + | tig0016958:15438-15457 | None:intergenic | 30.0% |
| ! | CATTTTGCTAAATTTGGATC+GGG | + | tig0016958:15439-15458 | None:intergenic | 30.0% |
| ! | GAATGATTGGTCAATGAATT+CGG | - | tig0016958:15610-15629 | Msa1360220:CDS | 30.0% |
| GAAATATTGCAGGAATTTGA+TGG | - | tig0016958:15644-15663 | Msa1360220:CDS | 30.0% | |
| AATATTGCAGGAATTTGATG+GGG | - | tig0016958:15646-15665 | Msa1360220:CDS | 30.0% | |
| GTACAGCAGTCTTAAATATA+AGG | + | tig0016958:15778-15797 | None:intergenic | 30.0% | |
| ACAGAAGATGAAACGAATTT+CGG | - | tig0016958:15839-15858 | Msa1360220:CDS | 30.0% | |
| GGTATAGATTTGTCATAGAA+AGG | - | tig0016958:15860-15879 | Msa1360220:CDS | 30.0% | |
| TAGAAACATCCTTTGTACAT+TGG | - | tig0016958:15898-15917 | Msa1360220:CDS | 30.0% | |
| TCATGATAAGACAAACAAAG+GGG | + | tig0016958:15947-15966 | None:intergenic | 30.0% | |
| AGACTTACTTGAAGATATGA+AGG | - | tig0016958:16090-16109 | Msa1360220:CDS | 30.0% | |
| TATGAAGGCTATGTAACTAA+TGG | - | tig0016958:16105-16124 | Msa1360220:CDS | 30.0% | |
| GGATATGACACATGAATGTA+GGG | + | tig0016958:13910-13929 | None:intergenic | 35.0% | |
| !!! | ACACAAGTTGAGTGTTGTTT+TGG | + | tig0016958:13964-13983 | None:intergenic | 35.0% |
| TCATTAGATTGAGACTTGTG+CGG | + | tig0016958:13999-14018 | None:intergenic | 35.0% | |
| !!! | TAGCTTTTCTAGGTGTTGTT+GGG | + | tig0016958:14065-14084 | None:intergenic | 35.0% |
| !! | TTAGCTTTTCTAGGTGTTGT+TGG | + | tig0016958:14066-14085 | None:intergenic | 35.0% |
| !!! | TGTATTGGGTTAGCTTTTCT+AGG | + | tig0016958:14075-14094 | None:intergenic | 35.0% |
| AGGGTTATAGAAGTAGAAAG+TGG | + | tig0016958:14103-14122 | None:intergenic | 35.0% | |
| GTGGAGAAAGATAGAAGAAA+AGG | + | tig0016958:14123-14142 | None:intergenic | 35.0% | |
| !!! | TTTGGTTTTGGATAGTGAGA+AGG | + | tig0016958:14345-14364 | None:intergenic | 35.0% |
| GCTTGAATCAAATCTTGGTT+TGG | + | tig0016958:14363-14382 | None:intergenic | 35.0% | |
| AAATATAGCTGAGGTTGTCA+TGG | + | tig0016958:14496-14515 | None:intergenic | 35.0% | |
| !! | GTACTGTGATTTTTGTTTGG+TGG | + | tig0016958:14545-14564 | None:intergenic | 35.0% |
| TTGAGGTGGTTTCTCTTTAA+GGG | + | tig0016958:14616-14635 | None:intergenic | 35.0% | |
| ! | TTTGAGGTGGTTTCTCTTTA+AGG | + | tig0016958:14617-14636 | None:intergenic | 35.0% |
| ! | CACTTTTCCAATTCTGAACT+AGG | + | tig0016958:14642-14661 | None:intergenic | 35.0% |
| CTAGTTCAGAATTGGAAAAG+TGG | - | tig0016958:14640-14659 | Msa1360220:intron | 35.0% | |
| ATTGGAAAAGTGGAAACTTC+AGG | - | tig0016958:14650-14669 | Msa1360220:intron | 35.0% | |
| TTGGAAAAGTGGAAACTTCA+GGG | - | tig0016958:14651-14670 | Msa1360220:intron | 35.0% | |
| GTTGAAGAATGAGAAAAAGG+TGG | - | tig0016958:14677-14696 | Msa1360220:intron | 35.0% | |
| GTCAAGAAAAGTAACTGTTG+TGG | - | tig0016958:14722-14741 | Msa1360220:intron | 35.0% | |
| GTAACTGTTGTGGAAAAAGA+AGG | - | tig0016958:14732-14751 | Msa1360220:intron | 35.0% | |
| ! | AAAAGAAGGTGGTGATGTTA+AGG | - | tig0016958:14746-14765 | Msa1360220:intron | 35.0% |
| !! | GAGAGAGTTTCTGTTTCTAT+GGG | - | tig0016958:14768-14787 | Msa1360220:intron | 35.0% |
| GGTAGAAGAAAATCGTTATG+TGG | - | tig0016958:14813-14832 | Msa1360220:intron | 35.0% | |
| ! | TGTGGGTCAATGATTGATTT+AGG | - | tig0016958:14831-14850 | Msa1360220:intron | 35.0% |
| CCTAGTTCAATTGACAATGT+CGG | - | tig0016958:15158-15177 | Msa1360220:intron | 35.0% | |
| ATCTAAGGACCACTAAAACT+CGG | + | tig0016958:15244-15263 | None:intergenic | 35.0% | |
| ACATACGCTAAAGTCATCTA+AGG | + | tig0016958:15259-15278 | None:intergenic | 35.0% | |
| TATGTTGACGAGAGAATGAT+TGG | - | tig0016958:15274-15293 | Msa1360220:CDS | 35.0% | |
| !! | ACGTGGTTTACTTTTGCATT+AGG | - | tig0016958:15536-15555 | Msa1360220:CDS | 35.0% |
| TAGAAATCCTCCAACAGAAT+GGG | + | tig0016958:15726-15745 | None:intergenic | 35.0% | |
| ATAGAAATCCTCCAACAGAA+TGG | + | tig0016958:15727-15746 | None:intergenic | 35.0% | |
| CTGTACAAAAAGCAGATTGA+AGG | - | tig0016958:15792-15811 | Msa1360220:CDS | 35.0% | |
| ACAAAAAGCAGATTGAAGGA+AGG | - | tig0016958:15796-15815 | Msa1360220:CDS | 35.0% | |
| AAGCATAAGCCAATGTACAA+AGG | + | tig0016958:15910-15929 | None:intergenic | 35.0% | |
| CATGATAAGACAAACAAAGG+GGG | + | tig0016958:15946-15965 | None:intergenic | 35.0% | |
| ! | TTTTACAGAACCTAAGTGCA+TGG | - | tig0016958:15967-15986 | Msa1360220:CDS | 35.0% |
| ATGATTCTAACCATGCACTT+AGG | + | tig0016958:15980-15999 | None:intergenic | 35.0% | |
| ACATTGCTGTATTGTAGCAT+TGG | - | tig0016958:16018-16037 | Msa1360220:CDS | 35.0% | |
| ATCAACATTATATCCAACGG+TGG | - | tig0016958:16141-16160 | Msa1360220:CDS | 35.0% | |
| !! | ACACGATCAATTTTTGAGCT+CGG | - | tig0016958:16292-16311 | Msa1360220:five_prime_UTR | 35.0% |
| GGGATATGACACATGAATGT+AGG | + | tig0016958:13911-13930 | None:intergenic | 40.0% | |
| AAAGAACATGGAGAAGAGGA+AGG | + | tig0016958:14041-14060 | None:intergenic | 40.0% | |
| !!! | AGCTTTTCTAGGTGTTGTTG+GGG | + | tig0016958:14064-14083 | None:intergenic | 40.0% |
| !!! | TGGGTGGTTTTGTTTTGTTG+TGG | + | tig0016958:14142-14161 | None:intergenic | 40.0% |
| TTTGCACCGTCTATTCAACA+TGG | - | tig0016958:14200-14219 | Msa1360220:three_prime_UTR | 40.0% | |
| TTTGGTTGCTTAGCTAAAGC+AGG | + | tig0016958:14279-14298 | None:intergenic | 40.0% | |
| !!! | GTTTTTGTAGTGGTGGGTTT+TGG | + | tig0016958:14297-14316 | None:intergenic | 40.0% |
| ! | ATGGTGGTTTTTGTAGTGGT+GGG | + | tig0016958:14303-14322 | None:intergenic | 40.0% |
| !! | GAAGATGGTGGTTTTTGTAG+TGG | + | tig0016958:14307-14326 | None:intergenic | 40.0% |
| ! | TGAAGGTGATGATGAGAAGA+TGG | + | tig0016958:14322-14341 | None:intergenic | 40.0% |
| TTTGGATAGTGAGAAGGTGA+AGG | + | tig0016958:14339-14358 | None:intergenic | 40.0% | |
| CAAACGTGAGTCAACATGTT+TGG | + | tig0016958:14463-14482 | None:intergenic | 40.0% | |
| !! | TCTGAACTAGGTTTTTGAGG+TGG | + | tig0016958:14630-14649 | None:intergenic | 40.0% |
| TGGAAAAGTGGAAACTTCAG+GGG | - | tig0016958:14652-14671 | Msa1360220:intron | 40.0% | |
| GAATGAGAAAAAGGTGGTTG+AGG | - | tig0016958:14683-14702 | Msa1360220:intron | 40.0% | |
| AAAGGTGGTTGAGGATGTTA+AGG | - | tig0016958:14692-14711 | Msa1360220:intron | 40.0% | |
| ACTGTTGTGGAAAAAGAAGG+TGG | - | tig0016958:14735-14754 | Msa1360220:intron | 40.0% | |
| !! | GGAGAGAGTTTCTGTTTCTA+TGG | - | tig0016958:14767-14786 | Msa1360220:intron | 40.0% |
| !! | TCTGTTTCTATGGGTCAAAG+TGG | - | tig0016958:14777-14796 | Msa1360220:intron | 40.0% |
| ACAGCATGGATCTGCATAAA+CGG | + | tig0016958:14906-14925 | None:intergenic | 40.0% | |
| TTCTAGCACAATCAACAGCA+TGG | + | tig0016958:14920-14939 | None:intergenic | 40.0% | |
| CTTCTTGAGGGATAATGCTA+GGG | + | tig0016958:14979-14998 | None:intergenic | 40.0% | |
| CCGACATTGTCAATTGAACT+AGG | + | tig0016958:15161-15180 | None:intergenic | 40.0% | |
| ! | TTTTATCGGGTTCGAACCAA+GGG | - | tig0016958:15199-15218 | Msa1360220:intron | 40.0% |
| GTCAATGAATTCGGTTGTGT+GGG | - | tig0016958:15619-15638 | Msa1360220:CDS | 40.0% | |
| ! | TGTGTGGGTTGAAATATTGC+AGG | - | tig0016958:15634-15653 | Msa1360220:CDS | 40.0% |
| !!! | TGTATTGTGGGGACTAGTTT+TGG | - | tig0016958:15689-15708 | Msa1360220:CDS | 40.0% |
| TCATTTGTGACCCATTCTGT+TGG | - | tig0016958:15713-15732 | Msa1360220:CDS | 40.0% | |
| AAAAGCAGATTGAAGGAAGG+TGG | - | tig0016958:15799-15818 | Msa1360220:CDS | 40.0% | |
| TTGAAGGAAGGTGGTGAATT+TGG | - | tig0016958:15808-15827 | Msa1360220:CDS | 40.0% | |
| ! | ACAAAGGGGGTGATTCATTT+TGG | + | tig0016958:15933-15952 | None:intergenic | 40.0% |
| AAACTGCAACATCTGTGACT+GGG | + | tig0016958:16260-16279 | None:intergenic | 40.0% | |
| TAAACTGCAACATCTGTGAC+TGG | + | tig0016958:16261-16280 | None:intergenic | 40.0% | |
| CACACGTAAGTGCTAGTCAA+AGG | - | tig0016958:13876-13895 | Msa1360220:three_prime_UTR | 45.0% | |
| ! | GTGTTGTTGGGGAAAGAACA+TGG | + | tig0016958:14053-14072 | None:intergenic | 45.0% |
| GGTGTGCCATGTTGAATAGA+CGG | + | tig0016958:14209-14228 | None:intergenic | 45.0% | |
| !! | GATGGTGGTTTTTGTAGTGG+TGG | + | tig0016958:14304-14323 | None:intergenic | 45.0% |
| ! | AGGTGATGATGAGAAGATGG+TGG | + | tig0016958:14319-14338 | None:intergenic | 45.0% |
| !! | CATGTTGACTCACGTTTGCA+AGG | - | tig0016958:14465-14484 | Msa1360220:CDS | 45.0% |
| !! | GTTTGGTGGGTGTTGTTGTT+GGG | + | tig0016958:14531-14550 | None:intergenic | 45.0% |
| !! | TGTTTGGTGGGTGTTGTTGT+TGG | + | tig0016958:14532-14551 | None:intergenic | 45.0% |
| GTTTCTATGGGTCAAAGTGG+TGG | - | tig0016958:14780-14799 | Msa1360220:intron | 45.0% | |
| ! | GAGGGATAATGCTAGGGTTT+TGG | + | tig0016958:14973-14992 | None:intergenic | 45.0% |
| CCTTCTTGAGGGATAATGCT+AGG | + | tig0016958:14980-14999 | None:intergenic | 45.0% | |
| CCTAGCATTATCCCTCAAGA+AGG | - | tig0016958:14977-14996 | Msa1360220:intron | 45.0% | |
| ! | CTTTTATCGGGTTCGAACCA+AGG | - | tig0016958:15198-15217 | Msa1360220:intron | 45.0% |
| !! | TAGCTGTGTCCGAGTTTTAG+TGG | - | tig0016958:15232-15251 | Msa1360220:intron | 45.0% |
| GGTCAATGAATTCGGTTGTG+TGG | - | tig0016958:15618-15637 | Msa1360220:CDS | 45.0% | |
| CAGGAATTTGATGGGGTGTA+TGG | - | tig0016958:15653-15672 | Msa1360220:CDS | 45.0% | |
| TTTGTGACCCATTCTGTTGG+AGG | - | tig0016958:15716-15735 | Msa1360220:CDS | 45.0% | |
| !!! | TTGGTTTTGTCACGCGCCAA+GGG | + | tig0016958:13945-13964 | None:intergenic | 50.0% |
| !!! | TTTGGTTTTGTCACGCGCCA+AGG | + | tig0016958:13946-13965 | None:intergenic | 50.0% |
| GGGGAAAGAACATGGAGAAG+AGG | + | tig0016958:14045-14064 | None:intergenic | 50.0% | |
| TGCTTAGCTAAAGCAGGAGG+TGG | + | tig0016958:14273-14292 | None:intergenic | 50.0% | |
| GGTTGCTTAGCTAAAGCAGG+AGG | + | tig0016958:14276-14295 | None:intergenic | 50.0% | |
| TCTATGGGTCAAAGTGGTGG+TGG | - | tig0016958:14783-14802 | Msa1360220:intron | 50.0% | |
| GCATGGATCTGCATAAACGG+TGG | + | tig0016958:14903-14922 | None:intergenic | 50.0% | |
| ACCAGCATGGCACTGTATTG+TGG | - | tig0016958:15676-15695 | Msa1360220:CDS | 50.0% | |
| CCAGCATGGCACTGTATTGT+GGG | - | tig0016958:15677-15696 | Msa1360220:CDS | 50.0% | |
| CAGCATGGCACTGTATTGTG+GGG | - | tig0016958:15678-15697 | Msa1360220:CDS | 50.0% | |
| GCAACAATTGTGACCACCGT+TGG | + | tig0016958:16157-16176 | None:intergenic | 50.0% | |
| ATCCCAACACACACACCCCT+TGG | - | tig0016958:13926-13945 | Msa1360220:three_prime_UTR | 55.0% | |
| !!! | TGGTTTTGTCACGCGCCAAG+GGG | + | tig0016958:13944-13963 | None:intergenic | 55.0% |
| ! | GCAGGAGGTGGATTTGTCTC+CGG | + | tig0016958:14261-14280 | None:intergenic | 55.0% |
| !! | ATGGGTCAAAGTGGTGGTGG+TGG | - | tig0016958:14786-14805 | Msa1360220:intron | 55.0% |
| ATCGGGTTCGAACCAAGGGT+AGG | - | tig0016958:15203-15222 | Msa1360220:intron | 55.0% | |
| TCGGGTTCGAACCAAGGGTA+GGG | - | tig0016958:15204-15223 | Msa1360220:intron | 55.0% | |
| CAGCTACAAGACCCTACCCT+TGG | + | tig0016958:15218-15237 | None:intergenic | 55.0% | |
| ATGGGGTGTATGGACCAGCA+TGG | - | tig0016958:15663-15682 | Msa1360220:CDS | 55.0% | |
| CCCACAATACAGTGCCATGC+TGG | + | tig0016958:15680-15699 | None:intergenic | 55.0% | |
| ! | CGCCAAGGGGTGTGTGTGTT+GGG | + | tig0016958:13931-13950 | None:intergenic | 60.0% |
| TGTTTCGCCGGCGGGAAGAA+CGG | + | tig0016958:14230-14249 | None:intergenic | 60.0% | |
| TTCTTCCCGCCGGCGAAACA+CGG | - | tig0016958:14230-14249 | Msa1360220:three_prime_UTR | 60.0% | |
| ! | GGAGGTGGATTTGTCTCCGG+TGG | + | tig0016958:14258-14277 | None:intergenic | 60.0% |
| !! | GGTCAAAGTGGTGGTGGTGG+TGG | - | tig0016958:14789-14808 | Msa1360220:intron | 60.0% |
| !! | CAAAGTGGTGGTGGTGGTGG+TGG | - | tig0016958:14792-14811 | Msa1360220:intron | 60.0% |
| ! | GCGCCAAGGGGTGTGTGTGT+TGG | + | tig0016958:13932-13951 | None:intergenic | 65.0% |
| TGGCACACCGTTCTTCCCGC+CGG | - | tig0016958:14220-14239 | Msa1360220:three_prime_UTR | 65.0% | |
| !! | TGGTGCCGTGTTTCGCCGGC+GGG | + | tig0016958:14238-14257 | None:intergenic | 70.0% |
| !! | GTGGTGCCGTGTTTCGCCGG+CGG | + | tig0016958:14239-14258 | None:intergenic | 70.0% |
| !! | CCGGTGGTGCCGTGTTTCGC+CGG | + | tig0016958:14242-14261 | None:intergenic | 70.0% |
| CCGGCGAAACACGGCACCAC+CGG | - | tig0016958:14239-14258 | Msa1360220:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0016958 | gene | 13872 | 16369 | 13872 | ID=Msa1360220;Name=Msa1360220 |
| tig0016958 | mRNA | 13872 | 16369 | 13872 | ID=Msa1360220-mRNA-1;Parent=Msa1360220;Name=Msa1360220-mRNA-1;_AED=0.01;_eAED=0.01;_QI=143|1|1|1|1|1|2|558|379 |
| tig0016958 | exon | 13872 | 14585 | 13872 | ID=Msa1360220-mRNA-1:exon:11819;Parent=Msa1360220-mRNA-1 |
| tig0016958 | exon | 15243 | 16369 | 15243 | ID=Msa1360220-mRNA-1:exon:11818;Parent=Msa1360220-mRNA-1 |
| tig0016958 | five_prime_UTR | 16227 | 16369 | 16227 | ID=Msa1360220-mRNA-1:five_prime_utr;Parent=Msa1360220-mRNA-1 |
| tig0016958 | CDS | 15243 | 16226 | 15243 | ID=Msa1360220-mRNA-1:cds;Parent=Msa1360220-mRNA-1 |
| tig0016958 | CDS | 14430 | 14585 | 14430 | ID=Msa1360220-mRNA-1:cds;Parent=Msa1360220-mRNA-1 |
| tig0016958 | three_prime_UTR | 13872 | 14429 | 13872 | ID=Msa1360220-mRNA-1:three_prime_utr;Parent=Msa1360220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
