AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1235400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1235400 MtrunA17_Chr8g0344131 97.271 733 12 5 1 732 1 726 0.0 1463
Msa1235400 MtrunA17_Chr7g0269591 35.680 412 218 10 227 593 146 555 2.35e-62 224
Msa1235400 MtrunA17_Chr5g0395711 43.541 209 106 3 221 417 121 329 1.17e-37 151
Msa1235400 MtrunA17_Chr5g0395711 50.394 127 54 2 443 560 446 572 1.68e-28 122
Msa1235400 MtrunA17_Chr4g0069291 29.846 325 197 6 252 552 116 433 1.57e-33 136
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1235400 AT3G14050.1 67.121 733 198 9 1 721 2 703 0.0 906
Msa1235400 AT1G54130.1 64.495 752 204 14 1 730 2 712 0.0 892
Msa1235400 AT4G02260.3 39.316 351 188 7 227 552 148 498 3.57e-60 218
Msa1235400 AT4G02260.4 39.316 351 188 7 227 552 148 498 6.21e-60 218
Msa1235400 AT4G02260.2 39.316 351 188 7 227 552 148 498 7.88e-60 218
Msa1235400 AT4G02260.1 39.205 352 188 8 227 552 148 499 2.62e-58 213
Msa1235400 AT3G17470.3 31.212 330 198 7 246 552 107 430 4.09e-37 145
Msa1235400 AT3G17470.1 31.212 330 198 7 246 552 107 430 4.16e-36 144
Msa1235400 AT3G17470.2 31.212 330 198 7 246 552 122 445 4.35e-36 144

Find 190 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTAAATTCCTTTCTTCTT+AGG 0.097135 8_2:+13405337 Msa1235400:five_prime_UTR
CCCATCTTCAACTTGCAATT+TGG 0.118666 8_2:-13408916 None:intergenic
ATTAACTATGATTTCGAATT+AGG 0.147309 8_2:+13405642 Msa1235400:CDS
GATGATATCCATGACATTTA+TGG 0.178626 8_2:+13407870 Msa1235400:CDS
CTTACTTATGATTATATATA+CGG 0.188737 8_2:+13406522 Msa1235400:CDS
GATGGTGTTGGTGGTGATTC+TGG 0.210059 8_2:+13406104 Msa1235400:CDS
ATGCATTTGCAAGCAGAATT+TGG 0.213922 8_2:+13408168 Msa1235400:CDS
TGCTTTGGGTTCTTCTTGTT+TGG 0.222221 8_2:+13406028 Msa1235400:CDS
TTGTGAAGAGTTTGTTATTA+AGG 0.223595 8_2:+13406247 Msa1235400:CDS
ATTTCTTATCATGTCATTTC+TGG 0.239861 8_2:+13407580 Msa1235400:CDS
TTGAGTTTGCACAAAATTCT+TGG 0.247506 8_2:-13408780 None:intergenic
TTGCAATTTGGATCACTTAC+AGG 0.265645 8_2:-13408904 None:intergenic
CTGAATTTCTTCCCTATATT+CGG 0.288112 8_2:-13408983 None:intergenic
GCGACGGCGGCGTCTACGTC+TGG 0.303823 8_2:+13405693 Msa1235400:CDS
TGTAAATTCCTTTCTTCTTA+GGG 0.304032 8_2:+13405338 Msa1235400:five_prime_UTR
CTCAACAGTACTAGATTTGT+TGG 0.311629 8_2:+13408798 Msa1235400:CDS
CAATCAGGCTTGTAAGAATA+TGG 0.312359 8_2:-13408378 None:intergenic
TAGAAGTTGTTCACCGGTTA+TGG 0.315278 8_2:+13407937 Msa1235400:CDS
TCCGTATTTGCAGCATTGTT+TGG 0.330409 8_2:+13406413 Msa1235400:CDS
GATTATATATACGGGATGTT+TGG 0.331195 8_2:+13406531 Msa1235400:CDS
ACCGATTAGGAATAGCTAAT+TGG 0.332077 8_2:+13407413 Msa1235400:CDS
AAGAGCTGTCCTCATTAAAT+TGG 0.336185 8_2:+13407291 Msa1235400:CDS
CGACGAAGTTTGGTGGATCT+TGG 0.336434 8_2:+13405865 Msa1235400:CDS
TCCAATTAGCTATTCCTAAT+CGG 0.340721 8_2:-13407414 None:intergenic
GCACCTTTGGCCAACCGATT+AGG 0.347291 8_2:+13407400 Msa1235400:CDS
ACAAGTATCTGACCGAATAT+AGG 0.349388 8_2:+13408971 Msa1235400:CDS
TTTGGAAACTGCTGTGTTGT+TGG 0.368793 8_2:+13406431 Msa1235400:CDS
GGTGGTGGTGGTGAATTTGA+TGG 0.370524 8_2:+13406086 Msa1235400:CDS
ATGATATCCATGACATTTAT+GGG 0.372392 8_2:+13407871 Msa1235400:CDS
TGGGTTTGTGAGAAGTGCTT+TGG 0.378293 8_2:+13406013 Msa1235400:CDS
ATCAACAACTTCTTAGCATA+AGG 0.384347 8_2:-13406197 None:intergenic
CAAAATAGAACTTAAATAAC+TGG 0.384914 8_2:-13409231 None:intergenic
GAGAGATCATAGTCCAGTTT+CGG 0.385330 8_2:+13405890 Msa1235400:CDS
GAAAGCTCTTTGTGCTGTAC+AGG 0.386440 8_2:-13407475 None:intergenic
TAACCGGTGAACAACTTCTA+AGG 0.405585 8_2:-13407934 None:intergenic
CTTTGCAAACCTCTGCTGCT+TGG 0.408434 8_2:-13407359 None:intergenic
TTGTTCGAATTTGTACTTCA+AGG 0.408493 8_2:-13408140 None:intergenic
CCTCCCTGATCGAATTGTTC+CGG 0.409534 8_2:-13405964 None:intergenic
GATGACACTAGATGCATTAC+CGG 0.413123 8_2:+13407333 Msa1235400:CDS
GGCGTCTACGTCTGGGAAAT+CGG 0.414943 8_2:+13405701 Msa1235400:CDS
GGTGGTGAATTTGATGGTGT+TGG 0.416217 8_2:+13406092 Msa1235400:CDS
GGGTTTGTGAGAAGTGCTTT+GGG 0.417938 8_2:+13406014 Msa1235400:CDS
GGAGTTGCTGATTTAGTTGA+AGG 0.421830 8_2:+13406558 Msa1235400:CDS
TCCAAACAATGCTGCAAATA+CGG 0.422488 8_2:-13406414 None:intergenic
CAAGTATCTGACCGAATATA+GGG 0.424375 8_2:+13408972 Msa1235400:CDS
GAGGTTTGCAAAGGAAACTT+TGG 0.428632 8_2:+13407369 Msa1235400:CDS
AACCTCTGCTGCTTGGCAAC+CGG 0.433003 8_2:-13407352 None:intergenic
AATGATTGATTTATGTAGTT+GGG 0.435766 8_2:+13409208 Msa1235400:three_prime_UTR
GGTCCATCCTGCTCGCAATC+AGG 0.436241 8_2:-13408393 None:intergenic
ATGGGTGCCGGTGCGGGTAC+CGG 0.442415 8_2:+13405945 Msa1235400:CDS
ATCTCTGCACACTGTGGTGA+TGG 0.443111 8_2:+13408101 Msa1235400:CDS
AGTAAAGATTCCACTTCTGT+TGG 0.443308 8_2:+13408300 Msa1235400:CDS
TGTTTGGATTATGATTCTAC+TGG 0.445310 8_2:+13406044 Msa1235400:CDS
AATTTGGATTCGCTGCTCAT+TGG 0.445751 8_2:+13408184 Msa1235400:CDS
TCCAAATTGCAAGTTGAAGA+TGG 0.447857 8_2:+13408915 Msa1235400:CDS
CATGCACCTCAGACCATAAC+CGG 0.449375 8_2:-13407950 None:intergenic
ACAGGCTTGTGATTCAGTCT+TGG 0.449925 8_2:-13408886 None:intergenic
TACAACATACCCATTGAACT+TGG 0.450219 8_2:-13408000 None:intergenic
ATGCTACTACTACACGAAAC+AGG 0.451567 8_2:-13405924 None:intergenic
AATTCAACAGTAGTTGCTGC+TGG 0.454268 8_2:+13406468 Msa1235400:CDS
ATACATTGCCCCAAGTTCAA+TGG 0.454579 8_2:+13407990 Msa1235400:CDS
TAGATTTGTTGGAGAGGGTC+GGG 0.457657 8_2:+13408809 Msa1235400:CDS
TGGTGGTGATTCTGGAATTG+TGG 0.457934 8_2:+13406112 Msa1235400:CDS
ATCTTCGTCACCGGCGTCTA+CGG 0.466938 8_2:+13405671 Msa1235400:CDS
TTGGATTCGCTGCTCATTGG+AGG 0.470246 8_2:+13408187 Msa1235400:CDS
AGTAGCATGGGTGCCGGTGC+GGG 0.474221 8_2:+13405939 Msa1235400:CDS
TACGTCTGGGAAATCGGTGA+TGG 0.474358 8_2:+13405707 Msa1235400:CDS
TACATTGCCCCAAGTTCAAT+GGG 0.477235 8_2:+13407991 Msa1235400:CDS
GCTGTGTTGTTGGCTTTGAT+CGG 0.482957 8_2:+13406441 Msa1235400:CDS
GCCTCAATTCTTCCTTCAGA+GGG 0.483136 8_2:-13408864 None:intergenic
CGATCAGGGAGGGGAAGTAC+TGG 0.484040 8_2:+13405975 Msa1235400:CDS
GAATGATTGATTTATGTAGT+TGG 0.484156 8_2:+13409207 Msa1235400:three_prime_UTR
GGTACCGGAACAATTCGATC+AGG 0.485761 8_2:+13405960 Msa1235400:CDS
TGTTCGAATTTGTACTTCAA+GGG 0.486391 8_2:-13408139 None:intergenic
GCTGCGCTTGATTGTTGATA+AGG 0.487554 8_2:+13407893 Msa1235400:CDS
AGCTTTCTCAGCTTCACAAA+AGG 0.487843 8_2:-13406270 None:intergenic
GAATGAATAAGGAACAAGAA+GGG 0.488008 8_2:-13405190 None:intergenic
AGGGGAGGAGTATGAAAAGA+CGG 0.491616 8_2:-13405171 None:intergenic
AGATTACGCGGTGGTGGTGG+TGG 0.491666 8_2:+13406071 Msa1235400:CDS
GAAAAGAACCCTAAGAAGAA+AGG 0.494132 8_2:-13405346 None:intergenic
GGGAGGGGAAGTACTGGTGG+TGG 0.494745 8_2:+13405981 Msa1235400:CDS
GGGCTCGATGGGTTGTCACC+TGG 0.495606 8_2:+13408262 Msa1235400:CDS
TGAAAAGACGGGTTTAACCT+TGG 0.495675 8_2:-13405159 None:intergenic
GGGGAGGAGTATGAAAAGAC+GGG 0.499636 8_2:-13405170 None:intergenic
AGAGAGAAGCACGCAAGAGA+TGG 0.503862 8_2:-13405264 None:intergenic
GTTAGATTACGCGGTGGTGG+TGG 0.504725 8_2:+13406068 Msa1235400:CDS
AGATACTTGTCAGGTATGGC+TGG 0.505901 8_2:-13408958 None:intergenic
AGAGCTTTCGTCAAAGCTTG+TGG 0.510991 8_2:+13407489 Msa1235400:CDS
TTACTTATGATTATATATAC+GGG 0.511289 8_2:+13406523 Msa1235400:CDS
TTACGCGGTGGTGGTGGTGG+TGG 0.511301 8_2:+13406074 Msa1235400:CDS
TATTCGGTCAGATACTTGTC+AGG 0.512446 8_2:-13408967 None:intergenic
ATCTTCATCACCACCACCAC+CGG 0.515186 8_2:-13405799 None:intergenic
CGCTGCTCATTGGAGGTACA+AGG 0.516170 8_2:+13408194 Msa1235400:CDS
TTCTTCATATGTGCTTCAGA+TGG 0.516537 8_2:+13408233 Msa1235400:CDS
GGTGAATTTGATGGTGTTGG+TGG 0.516562 8_2:+13406095 Msa1235400:CDS
CGGTTATGGTCTGAGGTGCA+TGG 0.519568 8_2:+13407951 Msa1235400:CDS
CTAGATTTGTTGGAGAGGGT+CGG 0.525008 8_2:+13408808 Msa1235400:CDS
TTACAAGCCTGATTGCGAGC+AGG 0.526518 8_2:+13408386 Msa1235400:CDS
GGAGGGGAAGTACTGGTGGT+GGG 0.527525 8_2:+13405982 Msa1235400:CDS
GGCCTCAATTCTTCCTTCAG+AGG 0.533475 8_2:-13408865 None:intergenic
TGAGAAAGCTCATAGAGGAC+AGG 0.534366 8_2:+13406283 Msa1235400:CDS
TGGTGATGAAGATGAATTGA+AGG 0.535373 8_2:+13405809 Msa1235400:CDS
ACAACATACCCATTGAACTT+GGG 0.535483 8_2:-13407999 None:intergenic
GTCACCGGCGTCTACGGCGA+CGG 0.537490 8_2:+13405677 Msa1235400:CDS
AGATGGTTGAGTGGGCTCGA+TGG 0.537950 8_2:+13408250 Msa1235400:CDS
GCTGTGACTAAATCAAATGT+TGG 0.538779 8_2:-13409109 None:intergenic
GATGGTTGAGTGGGCTCGAT+GGG 0.540134 8_2:+13408251 Msa1235400:CDS
CGGGCTAACTGTATCAAGCA+TGG 0.545579 8_2:+13409020 Msa1235400:CDS
AACATATAGGTTCCCTCTGA+AGG 0.546405 8_2:+13408852 Msa1235400:CDS
GACAGTTATCAGCATGAGAA+GGG 0.546477 8_2:-13408356 None:intergenic
TGTTTCGTGTAGTAGTAGCA+TGG 0.546500 8_2:+13405926 Msa1235400:CDS
ATCGACAAATCCAACAGAAG+TGG 0.547140 8_2:-13408310 None:intergenic
ATATACGGGATGTTTGGAGC+TGG 0.549390 8_2:+13406537 Msa1235400:CDS
CCAAATTGCAAGTTGAAGAT+GGG 0.550752 8_2:+13408916 Msa1235400:CDS
AATTGTTCCGGTACCCGCAC+CGG 0.551906 8_2:-13405952 None:intergenic
ATTAGCTATTCCTAATCGGT+TGG 0.552553 8_2:-13407410 None:intergenic
CTCTTGCATCTGCCATTGCA+AGG 0.553256 8_2:-13407273 None:intergenic
TTGCAAGGAACATTGTATGC+AGG 0.553528 8_2:-13407258 None:intergenic
GAGCAAGCACTCAAAGATGA+AGG 0.553848 8_2:+13407556 Msa1235400:CDS
GCATACAATGTTCCTTGCAA+TGG 0.556040 8_2:+13407261 Msa1235400:CDS
ACGTCTGGGAAATCGGTGAT+GGG 0.557642 8_2:+13405708 Msa1235400:CDS
ATTCAACAGTAGTTGCTGCT+GGG 0.558656 8_2:+13406469 Msa1235400:CDS
TAGTAGCATGGGTGCCGGTG+CGG 0.559495 8_2:+13405938 Msa1235400:CDS
GCTACTGCAAGCAGCATGGT+TGG 0.562551 8_2:+13409051 Msa1235400:CDS
GGTCAGATACTTGTCAGGTA+TGG 0.563602 8_2:-13408962 None:intergenic
AGCGCAGCCCATAAATGTCA+TGG 0.564123 8_2:-13407878 None:intergenic
TACCGGTTGCCAAGCAGCAG+AGG 0.564469 8_2:+13407350 Msa1235400:CDS
GGAACAATTCGATCAGGGAG+GGG 0.565296 8_2:+13405966 Msa1235400:CDS
CGACGGCGGCGTCTACGTCT+GGG 0.569402 8_2:+13405694 Msa1235400:CDS
GGAATGAATAAGGAACAAGA+AGG 0.570177 8_2:-13405191 None:intergenic
CTTATCATGTCATTTCTGGA+CGG 0.571086 8_2:+13407584 Msa1235400:CDS
CAACATACCCATTGAACTTG+GGG 0.571860 8_2:-13407998 None:intergenic
GGACAGTTATCAGCATGAGA+AGG 0.573734 8_2:-13408357 None:intergenic
GCTGTAGGTTGACAACATAT+AGG 0.573805 8_2:+13408839 Msa1235400:CDS
TGTTCACCGGTTATGGTCTG+AGG 0.575398 8_2:+13407944 Msa1235400:CDS
AATGAATAAGGAACAAGAAG+GGG 0.578319 8_2:-13405189 None:intergenic
GAGTTGCTGATTTAGTTGAA+GGG 0.580287 8_2:+13406559 Msa1235400:CDS
TCTCTGCACACTGTGGTGAT+GGG 0.580339 8_2:+13408102 Msa1235400:CDS
ATCGATCAGCCAATTTAATG+AGG 0.581475 8_2:-13407300 None:intergenic
GAATAAGGAACAAGAAGGGG+AGG 0.582290 8_2:-13405186 None:intergenic
GTTTCGTGTAGTAGTAGCAT+GGG 0.582976 8_2:+13405927 Msa1235400:CDS
AAGCCTTAGAAGTTGTTCAC+CGG 0.583932 8_2:+13407931 Msa1235400:CDS
GGGTCGGGCGAGCAAGCTGT+AGG 0.584040 8_2:+13408824 Msa1235400:CDS
ACTGAGTCACTTAAGCAAGC+TGG 0.586111 8_2:+13407192 Msa1235400:CDS
AGTACTAGATTTGTTGGAGA+GGG 0.591903 8_2:+13408804 Msa1235400:CDS
CGGAACAATTCGATCAGGGA+GGG 0.592758 8_2:+13405965 Msa1235400:CDS
GGTTATGGTCTGAGGTGCAT+GGG 0.593196 8_2:+13407952 Msa1235400:CDS
CACACTGTGGTGATGGGTGA+AGG 0.596315 8_2:+13408108 Msa1235400:CDS
AAAGCTCTTTGTGCTGTACA+GGG 0.599815 8_2:-13407474 None:intergenic
GGTGTAGAACACACACTACT+CGG 0.601489 8_2:-13405612 None:intergenic
ATTAGGAATAGCTAATTGGA+AGG 0.601826 8_2:+13407417 Msa1235400:CDS
TTCAGCGAATGTATGATCGC+GGG 0.602849 8_2:+13409001 Msa1235400:CDS
GCGCTTGATTGTTGATAAGG+AGG 0.603331 8_2:+13407896 Msa1235400:CDS
TGTAGTAGTAGCATGGGTGC+CGG 0.604049 8_2:+13405933 Msa1235400:CDS
GTTCGAATTTGTACTTCAAG+GGG 0.605083 8_2:-13408138 None:intergenic
ATTCCTAATCGGTTGGCCAA+AGG 0.606063 8_2:-13407403 None:intergenic
CAAGCAGCAGAGGTTTGCAA+AGG 0.607809 8_2:+13407360 Msa1235400:CDS
GCATGAGAAGGGAACTTGCA+AGG 0.608349 8_2:-13408345 None:intergenic
TCAGGGAGGGGAAGTACTGG+TGG 0.609082 8_2:+13405978 Msa1235400:CDS
TGTGCTTCAGATGGTTGAGT+GGG 0.610056 8_2:+13408242 Msa1235400:CDS
ATGTGCTTCAGATGGTTGAG+TGG 0.615998 8_2:+13408241 Msa1235400:CDS
AGGATCTAGATCTTCGTCAC+CGG 0.616184 8_2:+13405662 Msa1235400:CDS
GGGCTAACTGTATCAAGCAT+GGG 0.621683 8_2:+13409021 Msa1235400:CDS
TGTGGTGATGGGTGAAGGCA+AGG 0.624487 8_2:+13408113 Msa1235400:CDS
TACTGCTACTGCAAGCAGCA+TGG 0.624524 8_2:+13409047 Msa1235400:CDS
GGTGTTAGATTACGCGGTGG+TGG 0.624885 8_2:+13406065 Msa1235400:CDS
GCCGCCGTCGCCGTAGACGC+CGG 0.625619 8_2:-13405681 None:intergenic
AAGCCTGATTGCGAGCAGGA+TGG 0.626790 8_2:+13408390 Msa1235400:CDS
CAGTACTAGATTTGTTGGAG+AGG 0.627425 8_2:+13408803 Msa1235400:CDS
AAATCATAGTTAATCTGATG+CGG 0.628203 8_2:-13405633 None:intergenic
TCCCTCTGAAGGAAGAATTG+AGG 0.628438 8_2:+13408863 Msa1235400:CDS
CAAGATCCACCAAACTTCGT+CGG 0.628498 8_2:-13405864 None:intergenic
TCTGGGAAATCGGTGATGGG+TGG 0.638476 8_2:+13405711 Msa1235400:CDS
TGTTTGTAGATGCGAGCTAG+TGG 0.645770 8_2:+13406387 Msa1235400:intron
GAAGCTGAGAAAGCTCATAG+AGG 0.646306 8_2:+13406278 Msa1235400:CDS
TCTACTGGTGTTAGATTACG+CGG 0.646568 8_2:+13406059 Msa1235400:CDS
AGTTGCTGATTTAGTTGAAG+GGG 0.648111 8_2:+13406560 Msa1235400:CDS
ACCGGCGTCTACGGCGACGG+CGG 0.651192 8_2:+13405680 Msa1235400:CDS
ACATGCTGCTTCACCACCGT+CGG 0.651198 8_2:-13405756 None:intergenic
TCAATCATGATAACAAACAC+AGG 0.655763 8_2:-13408414 None:intergenic
CAAGGAACATTGTATGCAGG+CGG 0.659437 8_2:-13407255 None:intergenic
GTACCGGAACAATTCGATCA+GGG 0.659700 8_2:+13405961 Msa1235400:CDS
ATTCAGCGAATGTATGATCG+CGG 0.666404 8_2:+13409000 Msa1235400:CDS
ATATACAAATGAATGTGCCG+AGG 0.677700 8_2:-13405373 None:intergenic
CCGGAACAATTCGATCAGGG+AGG 0.701868 8_2:+13405964 Msa1235400:CDS
TATCATGATTGAGAATGACA+AGG 0.707357 8_2:+13408425 Msa1235400:CDS
GTAGAACACACACTACTCGG+TGG 0.713186 8_2:-13405609 None:intergenic
ACTGGTGTTAGATTACGCGG+TGG 0.729692 8_2:+13406062 Msa1235400:CDS
TGAGAAGGGAACTTGCAAGG+TGG 0.737719 8_2:-13408342 None:intergenic
TTATCAATCTCTGCACACTG+TGG 0.751179 8_2:+13408095 Msa1235400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTACTTATGATTATATATA+CGG + chr8_2:13406522-13406541 Msa1235400:CDS 15.0%
!! TTACTTATGATTATATATAC+GGG + chr8_2:13406523-13406542 Msa1235400:CDS 15.0%
!!! TAGAATTATGTTCAATATTT+TGG + chr8_2:13408455-13408474 Msa1235400:intron 15.0%
!!! AGAATTATGTTCAATATTTT+GGG + chr8_2:13408456-13408475 Msa1235400:intron 15.0%
!! AGAAAGGAATTTACAAAAAA+GGG - chr8_2:13405333-13405352 None:intergenic 20.0%
!! AAGAAAGGAATTTACAAAAA+AGG - chr8_2:13405334-13405353 None:intergenic 20.0%
!!! TGTTTTTTAATTTTGTACAG+AGG - chr8_2:13405460-13405479 None:intergenic 20.0%
!!! TTCTTCTTCTTTTTCAATTT+GGG - chr8_2:13405533-13405552 None:intergenic 20.0%
!! ATTAACTATGATTTCGAATT+AGG + chr8_2:13405642-13405661 Msa1235400:CDS 20.0%
!!! TTTAAGATTAAGATGATTGA+TGG + chr8_2:13406623-13406642 Msa1235400:intron 20.0%
!! ATAAATAATGAAATGAAAGC+AGG - chr8_2:13408507-13408526 None:intergenic 20.0%
!!! AATGATTGATTTATGTAGTT+GGG + chr8_2:13409208-13409227 Msa1235400:three_prime_UTR 20.0%
!! CAAAATAGAACTTAAATAAC+TGG - chr8_2:13409234-13409253 None:intergenic 20.0%
!!! GTTTAACCTTGGATTTTTTT+TGG - chr8_2:13405151-13405170 None:intergenic 25.0%
!!! GATTTGTTGTTTGTGTTTTA+TGG - chr8_2:13405218-13405237 None:intergenic 25.0%
! AATTTACAAAAAAGGGATTC+TGG - chr8_2:13405326-13405345 None:intergenic 25.0%
! TTGTAAATTCCTTTCTTCTT+AGG + chr8_2:13405337-13405356 Msa1235400:five_prime_UTR 25.0%
! TGTAAATTCCTTTCTTCTTA+GGG + chr8_2:13405338-13405357 Msa1235400:five_prime_UTR 25.0%
!!! CTTTTTCAATTTGGGAATTA+GGG - chr8_2:13405525-13405544 None:intergenic 25.0%
!!! TCTTTTTCAATTTGGGAATT+AGG - chr8_2:13405526-13405545 None:intergenic 25.0%
!!! CTTCTTCTTCTTTTTCAATT+TGG - chr8_2:13405534-13405553 None:intergenic 25.0%
! AAATCATAGTTAATCTGATG+CGG - chr8_2:13405636-13405655 None:intergenic 25.0%
!! TAATTTGGATGATACTTTTG+TGG + chr8_2:13406148-13406167 Msa1235400:CDS 25.0%
!!! TTGTGAAGAGTTTGTTATTA+AGG + chr8_2:13406247-13406266 Msa1235400:CDS 25.0%
!! TTATGTGTGTTTGTGATTTT+TGG + chr8_2:13406323-13406342 Msa1235400:intron 25.0%
!!! TTTCGGTGTTAATCAATAAT+TGG + chr8_2:13406594-13406613 Msa1235400:intron 25.0%
!!! TTCGGTGTTAATCAATAATT+GGG + chr8_2:13406595-13406614 Msa1235400:intron 25.0%
! TAATAACTACAAACATCAAG+AGG - chr8_2:13406843-13406862 None:intergenic 25.0%
! AATGACAATTCAAATCCATT+AGG + chr8_2:13406875-13406894 Msa1235400:intron 25.0%
! CAAATCTATCATAAAAAGCT+AGG - chr8_2:13406923-13406942 None:intergenic 25.0%
!! TTTTTGTATTGCTAGTGATT+TGG + chr8_2:13406996-13407015 Msa1235400:intron 25.0%
!!! AAACCGATTAATTTGTATTG+TGG + chr8_2:13407045-13407064 Msa1235400:intron 25.0%
! CAACCACAATACAAATTAAT+CGG - chr8_2:13407051-13407070 None:intergenic 25.0%
!! ATTTCTTATCATGTCATTTC+TGG + chr8_2:13407580-13407599 Msa1235400:CDS 25.0%
!! TTTGAAGTGTGCAAATAATA+TGG - chr8_2:13407801-13407820 None:intergenic 25.0%
! ATGATATCCATGACATTTAT+GGG + chr8_2:13407871-13407890 Msa1235400:CDS 25.0%
!!! TTCAATATTTTGGGTTTAGT+TGG + chr8_2:13408465-13408484 Msa1235400:intron 25.0%
! GAAAACAAGTGTTAAAACAA+AGG - chr8_2:13408548-13408567 None:intergenic 25.0%
! TTGTACAGATATTTGAAAAC+AGG + chr8_2:13408591-13408610 Msa1235400:intron 25.0%
! AAACAGGAAACTGTTAAATT+AGG + chr8_2:13408607-13408626 Msa1235400:intron 25.0%
! AACAGGAAACTGTTAAATTA+GGG + chr8_2:13408608-13408627 Msa1235400:intron 25.0%
!!! TTTTTTATCTCAAACCAAAC+AGG + chr8_2:13408666-13408685 Msa1235400:intron 25.0%
!!! TATTTTTGAAGAACAAGCTA+GGG - chr8_2:13409087-13409106 None:intergenic 25.0%
!!! ATATTTTTGAAGAACAAGCT+AGG - chr8_2:13409088-13409107 None:intergenic 25.0%
!! GAATGATTGATTTATGTAGT+TGG + chr8_2:13409207-13409226 Msa1235400:three_prime_UTR 25.0%
ATTCCACCAAAAAAAATCCA+AGG + chr8_2:13405142-13405161 Msa1235400:five_prime_UTR 30.0%
!!! TAACCTTGGATTTTTTTTGG+TGG - chr8_2:13405148-13405167 None:intergenic 30.0%
AATGAATAAGGAACAAGAAG+GGG - chr8_2:13405192-13405211 None:intergenic 30.0%
GAATGAATAAGGAACAAGAA+GGG - chr8_2:13405193-13405212 None:intergenic 30.0%
! GTTTTATGGAGGAATGAATA+AGG - chr8_2:13405204-13405223 None:intergenic 30.0%
!!! TTGTTGTTTGTGTTTTATGG+AGG - chr8_2:13405215-13405234 None:intergenic 30.0%
!!! AAGAAGAAGGTTTTGGTTTA+TGG + chr8_2:13405557-13405576 Msa1235400:exon 30.0%
TGTTTGGATTATGATTCTAC+TGG + chr8_2:13406044-13406063 Msa1235400:CDS 30.0%
!! GGATGAGTTGACTTTTAATT+TGG + chr8_2:13406133-13406152 Msa1235400:CDS 30.0%
ATCAACAACTTCTTAGCATA+AGG - chr8_2:13406200-13406219 None:intergenic 30.0%
GATTATATATACGGGATGTT+TGG + chr8_2:13406531-13406550 Msa1235400:CDS 30.0%
AACATGCAATGCAAATCAAA+AGG - chr8_2:13406657-13406676 None:intergenic 30.0%
AGCTTATTGCATAAACCTAA+TGG - chr8_2:13406893-13406912 None:intergenic 30.0%
TATGTTATGTGTTTGTCAAG+TGG + chr8_2:13406952-13406971 Msa1235400:intron 30.0%
!!! AGTGATTTGGCTTTTTTGTA+TGG + chr8_2:13407009-13407028 Msa1235400:intron 30.0%
!! CGATTAATTTGTATTGTGGT+TGG + chr8_2:13407049-13407068 Msa1235400:intron 30.0%
TCCAATTAGCTATTCCTAAT+CGG - chr8_2:13407417-13407436 None:intergenic 30.0%
ATTAGGAATAGCTAATTGGA+AGG + chr8_2:13407417-13407436 Msa1235400:CDS 30.0%
ATAATATGGTGCATAATGTC+AGG - chr8_2:13407787-13407806 None:intergenic 30.0%
TCATTTGTCTACATATTTGC+AGG + chr8_2:13407832-13407851 Msa1235400:intron 30.0%
GATGATATCCATGACATTTA+TGG + chr8_2:13407870-13407889 Msa1235400:CDS 30.0%
TAAATCAGATGACATAGAGA+CGG - chr8_2:13408058-13408077 None:intergenic 30.0%
TGTTCGAATTTGTACTTCAA+GGG - chr8_2:13408142-13408161 None:intergenic 30.0%
TTGTTCGAATTTGTACTTCA+AGG - chr8_2:13408143-13408162 None:intergenic 30.0%
TCAATCATGATAACAAACAC+AGG - chr8_2:13408417-13408436 None:intergenic 30.0%
TATCATGATTGAGAATGACA+AGG + chr8_2:13408425-13408444 Msa1235400:CDS 30.0%
ACAGGAAACTGTTAAATTAG+GGG + chr8_2:13408609-13408628 Msa1235400:intron 30.0%
TTATACACTTCATGAAACCA+AGG - chr8_2:13408692-13408711 None:intergenic 30.0%
TTGAGTTTGCACAAAATTCT+TGG - chr8_2:13408783-13408802 None:intergenic 30.0%
CTGAATTTCTTCCCTATATT+CGG - chr8_2:13408986-13409005 None:intergenic 30.0%
GGAATGAATAAGGAACAAGA+AGG - chr8_2:13405194-13405213 None:intergenic 35.0%
! GGGATTCTGGAAAAATAAGA+AGG - chr8_2:13405313-13405332 None:intergenic 35.0%
GAAAAGAACCCTAAGAAGAA+AGG - chr8_2:13405349-13405368 None:intergenic 35.0%
! TAGGGTTCTTTTCTTATCCT+CGG + chr8_2:13405356-13405375 Msa1235400:five_prime_UTR 35.0%
ATATACAAATGAATGTGCCG+AGG - chr8_2:13405376-13405395 None:intergenic 35.0%
GAAGAAGAAGAAGAAGAAGA+AGG + chr8_2:13405544-13405563 Msa1235400:five_prime_UTR 35.0%
! GAAGAAGAAGAAGAAGGTTT+TGG + chr8_2:13405550-13405569 Msa1235400:five_prime_UTR 35.0%
!!! AAGAAGGTTTTGGTTTATGG+CGG + chr8_2:13405560-13405579 Msa1235400:exon 35.0%
!! CCTTTTACTTCGAGTTTTTC+CGG + chr8_2:13405780-13405799 Msa1235400:CDS 35.0%
! TGGTGATGAAGATGAATTGA+AGG + chr8_2:13405809-13405828 Msa1235400:CDS 35.0%
! TTTGGATGATACTTTTGTGG+AGG + chr8_2:13406151-13406170 Msa1235400:CDS 35.0%
! TTGGATGATACTTTTGTGGA+GGG + chr8_2:13406152-13406171 Msa1235400:CDS 35.0%
TCCAAACAATGCTGCAAATA+CGG - chr8_2:13406417-13406436 None:intergenic 35.0%
!! GAGTTGCTGATTTAGTTGAA+GGG + chr8_2:13406559-13406578 Msa1235400:CDS 35.0%
!! AGTTGCTGATTTAGTTGAAG+GGG + chr8_2:13406560-13406579 Msa1235400:CDS 35.0%
!!! AAGGGGTGAGGAATTTTTTT+CGG + chr8_2:13406577-13406596 Msa1235400:intron 35.0%
! ATTGTGGTTGGCATTTTTGT+AGG + chr8_2:13407061-13407080 Msa1235400:intron 35.0%
GCTTCAAGAATCTAACTGAT+TGG + chr8_2:13407148-13407167 Msa1235400:intron 35.0%
!! ACTGATTGGTATGCTATTTC+AGG + chr8_2:13407162-13407181 Msa1235400:intron 35.0%
AAGAGCTGTCCTCATTAAAT+TGG + chr8_2:13407291-13407310 Msa1235400:CDS 35.0%
ATCGATCAGCCAATTTAATG+AGG - chr8_2:13407303-13407322 None:intergenic 35.0%
! TTTGGAGATTTTTGCACCTT+TGG + chr8_2:13407387-13407406 Msa1235400:CDS 35.0%
ATTAGCTATTCCTAATCGGT+TGG - chr8_2:13407413-13407432 None:intergenic 35.0%
ACCGATTAGGAATAGCTAAT+TGG + chr8_2:13407413-13407432 Msa1235400:CDS 35.0%
! CTTATCATGTCATTTCTGGA+CGG + chr8_2:13407584-13407603 Msa1235400:CDS 35.0%
TTACCTTTCCCTCTTTCATT+TGG + chr8_2:13407652-13407671 Msa1235400:intron 35.0%
ACAACATACCCATTGAACTT+GGG - chr8_2:13408002-13408021 None:intergenic 35.0%
TACAACATACCCATTGAACT+TGG - chr8_2:13408003-13408022 None:intergenic 35.0%
GGTATGTTGTAGCTCAATAA+TGG + chr8_2:13408012-13408031 Msa1235400:intron 35.0%
GTTCGAATTTGTACTTCAAG+GGG - chr8_2:13408141-13408160 None:intergenic 35.0%
ATGCATTTGCAAGCAGAATT+TGG + chr8_2:13408168-13408187 Msa1235400:CDS 35.0%
TTCTTCATATGTGCTTCAGA+TGG + chr8_2:13408233-13408252 Msa1235400:CDS 35.0%
AGTAAAGATTCCACTTCTGT+TGG + chr8_2:13408300-13408319 Msa1235400:CDS 35.0%
CAATCAGGCTTGTAAGAATA+TGG - chr8_2:13408381-13408400 None:intergenic 35.0%
ACTATCATTCTGTCTGATTC+TGG + chr8_2:13408741-13408760 Msa1235400:intron 35.0%
CTCAACAGTACTAGATTTGT+TGG + chr8_2:13408798-13408817 Msa1235400:CDS 35.0%
!! AGTACTAGATTTGTTGGAGA+GGG + chr8_2:13408804-13408823 Msa1235400:CDS 35.0%
TTGCAATTTGGATCACTTAC+AGG - chr8_2:13408907-13408926 None:intergenic 35.0%
! TCCAAATTGCAAGTTGAAGA+TGG + chr8_2:13408915-13408934 Msa1235400:CDS 35.0%
! CCAAATTGCAAGTTGAAGAT+GGG + chr8_2:13408916-13408935 Msa1235400:CDS 35.0%
ACAAGTATCTGACCGAATAT+AGG + chr8_2:13408971-13408990 Msa1235400:CDS 35.0%
CAAGTATCTGACCGAATATA+GGG + chr8_2:13408972-13408991 Msa1235400:CDS 35.0%
GCTGTGACTAAATCAAATGT+TGG - chr8_2:13409112-13409131 None:intergenic 35.0%
! TGAAAAGACGGGTTTAACCT+TGG - chr8_2:13405162-13405181 None:intergenic 40.0%
!! GTGTTTGTTTTCATCTCCGA+CGG + chr8_2:13405740-13405759 Msa1235400:CDS 40.0%
CCGGAAAAACTCGAAGTAAA+AGG - chr8_2:13405783-13405802 None:intergenic 40.0%
!! TTTACTTCGAGTTTTTCCGG+TGG + chr8_2:13405783-13405802 Msa1235400:CDS 40.0%
! TCATTTTCACCGACGAAGTT+TGG + chr8_2:13405855-13405874 Msa1235400:CDS 40.0%
GAGAGATCATAGTCCAGTTT+CGG + chr8_2:13405890-13405909 Msa1235400:CDS 40.0%
ATGCTACTACTACACGAAAC+AGG - chr8_2:13405927-13405946 None:intergenic 40.0%
TGTTTCGTGTAGTAGTAGCA+TGG + chr8_2:13405926-13405945 Msa1235400:CDS 40.0%
GTTTCGTGTAGTAGTAGCAT+GGG + chr8_2:13405927-13405946 Msa1235400:CDS 40.0%
! TGCTTTGGGTTCTTCTTGTT+TGG + chr8_2:13406028-13406047 Msa1235400:CDS 40.0%
! TCTACTGGTGTTAGATTACG+CGG + chr8_2:13406059-13406078 Msa1235400:CDS 40.0%
AGCTTTCTCAGCTTCACAAA+AGG - chr8_2:13406273-13406292 None:intergenic 40.0%
TCCGTATTTGCAGCATTGTT+TGG + chr8_2:13406413-13406432 Msa1235400:CDS 40.0%
TTTGGAAACTGCTGTGTTGT+TGG + chr8_2:13406431-13406450 Msa1235400:CDS 40.0%
AATTCAACAGTAGTTGCTGC+TGG + chr8_2:13406468-13406487 Msa1235400:CDS 40.0%
ATTCAACAGTAGTTGCTGCT+GGG + chr8_2:13406469-13406488 Msa1235400:CDS 40.0%
!! GGAGTTGCTGATTTAGTTGA+AGG + chr8_2:13406558-13406577 Msa1235400:CDS 40.0%
GATGTCTTCCACCAATTGTT+CGG + chr8_2:13406761-13406780 Msa1235400:intron 40.0%
ATGTCTTCCACCAATTGTTC+GGG + chr8_2:13406762-13406781 Msa1235400:intron 40.0%
TTGCAAGGAACATTGTATGC+AGG - chr8_2:13407261-13407280 None:intergenic 40.0%
GCATACAATGTTCCTTGCAA+TGG + chr8_2:13407261-13407280 Msa1235400:CDS 40.0%
GATGACACTAGATGCATTAC+CGG + chr8_2:13407333-13407352 Msa1235400:CDS 40.0%
GAGGTTTGCAAAGGAAACTT+TGG + chr8_2:13407369-13407388 Msa1235400:CDS 40.0%
AAAGCTCTTTGTGCTGTACA+GGG - chr8_2:13407477-13407496 None:intergenic 40.0%
AAGCCTTAGAAGTTGTTCAC+CGG + chr8_2:13407931-13407950 Msa1235400:CDS 40.0%
TAACCGGTGAACAACTTCTA+AGG - chr8_2:13407937-13407956 None:intergenic 40.0%
! TAGAAGTTGTTCACCGGTTA+TGG + chr8_2:13407937-13407956 Msa1235400:CDS 40.0%
ATACATTGCCCCAAGTTCAA+TGG + chr8_2:13407990-13408009 Msa1235400:CDS 40.0%
TACATTGCCCCAAGTTCAAT+GGG + chr8_2:13407991-13408010 Msa1235400:CDS 40.0%
CAACATACCCATTGAACTTG+GGG - chr8_2:13408001-13408020 None:intergenic 40.0%
TTATCAATCTCTGCACACTG+TGG + chr8_2:13408095-13408114 Msa1235400:CDS 40.0%
AATTTGGATTCGCTGCTCAT+TGG + chr8_2:13408184-13408203 Msa1235400:CDS 40.0%
ATCGACAAATCCAACAGAAG+TGG - chr8_2:13408313-13408332 None:intergenic 40.0%
GACAGTTATCAGCATGAGAA+GGG - chr8_2:13408359-13408378 None:intergenic 40.0%
!! CAGTACTAGATTTGTTGGAG+AGG + chr8_2:13408803-13408822 Msa1235400:CDS 40.0%
! GCTGTAGGTTGACAACATAT+AGG + chr8_2:13408839-13408858 Msa1235400:CDS 40.0%
AACATATAGGTTCCCTCTGA+AGG + chr8_2:13408852-13408871 Msa1235400:CDS 40.0%
CCCATCTTCAACTTGCAATT+TGG - chr8_2:13408919-13408938 None:intergenic 40.0%
TATTCGGTCAGATACTTGTC+AGG - chr8_2:13408970-13408989 None:intergenic 40.0%
ATTCAGCGAATGTATGATCG+CGG + chr8_2:13409000-13409019 Msa1235400:CDS 40.0%
! AGGGGAGGAGTATGAAAAGA+CGG - chr8_2:13405174-13405193 None:intergenic 45.0%
GAATAAGGAACAAGAAGGGG+AGG - chr8_2:13405189-13405208 None:intergenic 45.0%
GGTGTAGAACACACACTACT+CGG - chr8_2:13405615-13405634 None:intergenic 45.0%
AGGATCTAGATCTTCGTCAC+CGG + chr8_2:13405662-13405681 Msa1235400:CDS 45.0%
!! TTTGTTTTCATCTCCGACGG+TGG + chr8_2:13405743-13405762 Msa1235400:CDS 45.0%
! TTTTCACCGACGAAGTTTGG+TGG + chr8_2:13405858-13405877 Msa1235400:CDS 45.0%
CAAGATCCACCAAACTTCGT+CGG - chr8_2:13405867-13405886 None:intergenic 45.0%
GGACACTGAAAAACCGAAAC+TGG - chr8_2:13405906-13405925 None:intergenic 45.0%
GTACCGGAACAATTCGATCA+GGG + chr8_2:13405961-13405980 Msa1235400:CDS 45.0%
!!! ACTGGTGGTGGGTTTTTTGA+TGG + chr8_2:13405993-13406012 Msa1235400:CDS 45.0%
!!! CTGGTGGTGGGTTTTTTGAT+GGG + chr8_2:13405994-13406013 Msa1235400:CDS 45.0%
!! TGGGTTTGTGAGAAGTGCTT+TGG + chr8_2:13406013-13406032 Msa1235400:CDS 45.0%
!! GGGTTTGTGAGAAGTGCTTT+GGG + chr8_2:13406014-13406033 Msa1235400:CDS 45.0%
!! GGTGGTGAATTTGATGGTGT+TGG + chr8_2:13406092-13406111 Msa1235400:CDS 45.0%
!! GGTGAATTTGATGGTGTTGG+TGG + chr8_2:13406095-13406114 Msa1235400:CDS 45.0%
!! TGGTGGTGATTCTGGAATTG+TGG + chr8_2:13406112-13406131 Msa1235400:CDS 45.0%
! ACTTTTGTGGAGGGTTGTGT+TGG + chr8_2:13406161-13406180 Msa1235400:CDS 45.0%
GAAGCTGAGAAAGCTCATAG+AGG + chr8_2:13406278-13406297 Msa1235400:CDS 45.0%
TGAGAAAGCTCATAGAGGAC+AGG + chr8_2:13406283-13406302 Msa1235400:CDS 45.0%
TGTTTGTAGATGCGAGCTAG+TGG + chr8_2:13406387-13406406 Msa1235400:intron 45.0%
!! GCTGTGTTGTTGGCTTTGAT+CGG + chr8_2:13406441-13406460 Msa1235400:CDS 45.0%
! ATATACGGGATGTTTGGAGC+TGG + chr8_2:13406537-13406556 Msa1235400:CDS 45.0%
CTGATTTAGTTGAAGGGGTG+AGG + chr8_2:13406565-13406584 Msa1235400:intron 45.0%
TGTCTTCCACCAATTGTTCG+GGG + chr8_2:13406763-13406782 Msa1235400:intron 45.0%
AGAGATGTACCCCGAACAAT+TGG - chr8_2:13406775-13406794 None:intergenic 45.0%
AATTGTTCGGGGTACATCTC+TGG + chr8_2:13406774-13406793 Msa1235400:intron 45.0%
ACTGAGTCACTTAAGCAAGC+TGG + chr8_2:13407192-13407211 Msa1235400:CDS 45.0%
CAAGGAACATTGTATGCAGG+CGG - chr8_2:13407258-13407277 None:intergenic 45.0%
! ATTCCTAATCGGTTGGCCAA+AGG - chr8_2:13407406-13407425 None:intergenic 45.0%
GAAAGCTCTTTGTGCTGTAC+AGG - chr8_2:13407478-13407497 None:intergenic 45.0%
AGAGCTTTCGTCAAAGCTTG+TGG + chr8_2:13407489-13407508 Msa1235400:CDS 45.0%
GAGCAAGCACTCAAAGATGA+AGG + chr8_2:13407556-13407575 Msa1235400:CDS 45.0%
CAGCCAAATGAAAGAGGGAA+AGG - chr8_2:13407658-13407677 None:intergenic 45.0%
CTTTCCCTCTTTCATTTGGC+TGG + chr8_2:13407656-13407675 Msa1235400:intron 45.0%
GTGACCAGCCAAATGAAAGA+GGG - chr8_2:13407663-13407682 None:intergenic 45.0%
AGTGACCAGCCAAATGAAAG+AGG - chr8_2:13407664-13407683 None:intergenic 45.0%
GCTGCGCTTGATTGTTGATA+AGG + chr8_2:13407893-13407912 Msa1235400:CDS 45.0%
! GCGCTTGATTGTTGATAAGG+AGG + chr8_2:13407896-13407915 Msa1235400:CDS 45.0%
ATGTGCTTCAGATGGTTGAG+TGG + chr8_2:13408241-13408260 Msa1235400:CDS 45.0%
TGTGCTTCAGATGGTTGAGT+GGG + chr8_2:13408242-13408261 Msa1235400:CDS 45.0%
GGACAGTTATCAGCATGAGA+AGG - chr8_2:13408360-13408379 None:intergenic 45.0%
ATCTCAAACCAAACAGGCCT+TGG + chr8_2:13408672-13408691 Msa1235400:intron 45.0%
TCATGAAACCAAGGCCTGTT+TGG - chr8_2:13408683-13408702 None:intergenic 45.0%
!! CTAGATTTGTTGGAGAGGGT+CGG + chr8_2:13408808-13408827 Msa1235400:CDS 45.0%
!! TAGATTTGTTGGAGAGGGTC+GGG + chr8_2:13408809-13408828 Msa1235400:CDS 45.0%
! TCCCTCTGAAGGAAGAATTG+AGG + chr8_2:13408863-13408882 Msa1235400:CDS 45.0%
GCCTCAATTCTTCCTTCAGA+GGG - chr8_2:13408867-13408886 None:intergenic 45.0%
ACAGGCTTGTGATTCAGTCT+TGG - chr8_2:13408889-13408908 None:intergenic 45.0%
AGATACTTGTCAGGTATGGC+TGG - chr8_2:13408961-13408980 None:intergenic 45.0%
GGTCAGATACTTGTCAGGTA+TGG - chr8_2:13408965-13408984 None:intergenic 45.0%
TTCAGCGAATGTATGATCGC+GGG + chr8_2:13409001-13409020 Msa1235400:CDS 45.0%
GGGCTAACTGTATCAAGCAT+GGG + chr8_2:13409021-13409040 Msa1235400:CDS 45.0%
! GGGGAGGAGTATGAAAAGAC+GGG - chr8_2:13405173-13405192 None:intergenic 50.0%
! AGAGAGAAGCACGCAAGAGA+TGG - chr8_2:13405267-13405286 None:intergenic 50.0%
GTAGAACACACACTACTCGG+TGG - chr8_2:13405612-13405631 None:intergenic 50.0%
TACGTCTGGGAAATCGGTGA+TGG + chr8_2:13405707-13405726 Msa1235400:CDS 50.0%
ACGTCTGGGAAATCGGTGAT+GGG + chr8_2:13405708-13405727 Msa1235400:CDS 50.0%
!! ACTTCGAGTTTTTCCGGTGG+TGG + chr8_2:13405786-13405805 Msa1235400:CDS 50.0%
ATCTTCATCACCACCACCAC+CGG - chr8_2:13405802-13405821 None:intergenic 50.0%
! CGACGAAGTTTGGTGGATCT+TGG + chr8_2:13405865-13405884 Msa1235400:CDS 50.0%
TGTAGTAGTAGCATGGGTGC+CGG + chr8_2:13405933-13405952 Msa1235400:CDS 50.0%
! GGTACCGGAACAATTCGATC+AGG + chr8_2:13405960-13405979 Msa1235400:CDS 50.0%
CCTCCCTGATCGAATTGTTC+CGG - chr8_2:13405967-13405986 None:intergenic 50.0%
CGGAACAATTCGATCAGGGA+GGG + chr8_2:13405965-13405984 Msa1235400:CDS 50.0%
GGAACAATTCGATCAGGGAG+GGG + chr8_2:13405966-13405985 Msa1235400:CDS 50.0%
! ACTGGTGTTAGATTACGCGG+TGG + chr8_2:13406062-13406081 Msa1235400:CDS 50.0%
!! GGTGGTGGTGGTGAATTTGA+TGG + chr8_2:13406086-13406105 Msa1235400:CDS 50.0%
!! GATGGTGTTGGTGGTGATTC+TGG + chr8_2:13406104-13406123 Msa1235400:CDS 50.0%
GATGTACCCCGAACAATTGG+TGG - chr8_2:13406772-13406791 None:intergenic 50.0%
CTCTTGCATCTGCCATTGCA+AGG - chr8_2:13407276-13407295 None:intergenic 50.0%
CTTTGCAAACCTCTGCTGCT+TGG - chr8_2:13407362-13407381 None:intergenic 50.0%
CAAGCAGCAGAGGTTTGCAA+AGG + chr8_2:13407360-13407379 Msa1235400:CDS 50.0%
AGCGCAGCCCATAAATGTCA+TGG - chr8_2:13407881-13407900 None:intergenic 50.0%
! TGTTCACCGGTTATGGTCTG+AGG + chr8_2:13407944-13407963 Msa1235400:CDS 50.0%
CATGCACCTCAGACCATAAC+CGG - chr8_2:13407953-13407972 None:intergenic 50.0%
! GGTTATGGTCTGAGGTGCAT+GGG + chr8_2:13407952-13407971 Msa1235400:CDS 50.0%
ATCTCTGCACACTGTGGTGA+TGG + chr8_2:13408101-13408120 Msa1235400:CDS 50.0%
TCTCTGCACACTGTGGTGAT+GGG + chr8_2:13408102-13408121 Msa1235400:CDS 50.0%
TTGGATTCGCTGCTCATTGG+AGG + chr8_2:13408187-13408206 Msa1235400:CDS 50.0%
TGAGAAGGGAACTTGCAAGG+TGG - chr8_2:13408345-13408364 None:intergenic 50.0%
GCATGAGAAGGGAACTTGCA+AGG - chr8_2:13408348-13408367 None:intergenic 50.0%
TTACAAGCCTGATTGCGAGC+AGG + chr8_2:13408386-13408405 Msa1235400:CDS 50.0%
GGCCTCAATTCTTCCTTCAG+AGG - chr8_2:13408868-13408887 None:intergenic 50.0%
CGGGCTAACTGTATCAAGCA+TGG + chr8_2:13409020-13409039 Msa1235400:CDS 50.0%
TACTGCTACTGCAAGCAGCA+TGG + chr8_2:13409047-13409066 Msa1235400:CDS 50.0%
ATCTTCGTCACCGGCGTCTA+CGG + chr8_2:13405671-13405690 Msa1235400:CDS 55.0%
GGCGTCTACGTCTGGGAAAT+CGG + chr8_2:13405701-13405720 Msa1235400:CDS 55.0%
!! TCTGGGAAATCGGTGATGGG+TGG + chr8_2:13405711-13405730 Msa1235400:CDS 55.0%
! ACATGCTGCTTCACCACCGT+CGG - chr8_2:13405759-13405778 None:intergenic 55.0%
!! TCGAGTTTTTCCGGTGGTGG+TGG + chr8_2:13405789-13405808 Msa1235400:CDS 55.0%
AATTGTTCCGGTACCCGCAC+CGG - chr8_2:13405955-13405974 None:intergenic 55.0%
CCGGAACAATTCGATCAGGG+AGG + chr8_2:13405964-13405983 Msa1235400:CDS 55.0%
GGTGTTAGATTACGCGGTGG+TGG + chr8_2:13406065-13406084 Msa1235400:CDS 55.0%
! GTTAGATTACGCGGTGGTGG+TGG + chr8_2:13406068-13406087 Msa1235400:CDS 55.0%
! AACCTCTGCTGCTTGGCAAC+CGG - chr8_2:13407355-13407374 None:intergenic 55.0%
GCACCTTTGGCCAACCGATT+AGG + chr8_2:13407400-13407419 Msa1235400:CDS 55.0%
! CGGTTATGGTCTGAGGTGCA+TGG + chr8_2:13407951-13407970 Msa1235400:CDS 55.0%
!! CACACTGTGGTGATGGGTGA+AGG + chr8_2:13408108-13408127 Msa1235400:CDS 55.0%
!! TGTGGTGATGGGTGAAGGCA+AGG + chr8_2:13408113-13408132 Msa1235400:CDS 55.0%
! CGCTGCTCATTGGAGGTACA+AGG + chr8_2:13408194-13408213 Msa1235400:CDS 55.0%
! AGATGGTTGAGTGGGCTCGA+TGG + chr8_2:13408250-13408269 Msa1235400:CDS 55.0%
! GATGGTTGAGTGGGCTCGAT+GGG + chr8_2:13408251-13408270 Msa1235400:CDS 55.0%
ACTCATTGCTTCGCACTGCC+AGG - chr8_2:13408283-13408302 None:intergenic 55.0%
AAGCCTGATTGCGAGCAGGA+TGG + chr8_2:13408390-13408409 Msa1235400:CDS 55.0%
GCTACTGCAAGCAGCATGGT+TGG + chr8_2:13409051-13409070 Msa1235400:CDS 55.0%
!! TAGTAGCATGGGTGCCGGTG+CGG + chr8_2:13405938-13405957 Msa1235400:CDS 60.0%
! CGATCAGGGAGGGGAAGTAC+TGG + chr8_2:13405975-13405994 Msa1235400:CDS 60.0%
!! TCAGGGAGGGGAAGTACTGG+TGG + chr8_2:13405978-13405997 Msa1235400:CDS 60.0%
!! GGAGGGGAAGTACTGGTGGT+GGG + chr8_2:13405982-13406001 Msa1235400:CDS 60.0%
!! AGATTACGCGGTGGTGGTGG+TGG + chr8_2:13406071-13406090 Msa1235400:CDS 60.0%
! TACCGGTTGCCAAGCAGCAG+AGG + chr8_2:13407350-13407369 Msa1235400:CDS 60.0%
GGTCCATCCTGCTCGCAATC+AGG - chr8_2:13408396-13408415 None:intergenic 60.0%
!! AGTAGCATGGGTGCCGGTGC+GGG + chr8_2:13405939-13405958 Msa1235400:CDS 65.0%
!! GGGAGGGGAAGTACTGGTGG+TGG + chr8_2:13405981-13406000 Msa1235400:CDS 65.0%
!! TTACGCGGTGGTGGTGGTGG+TGG + chr8_2:13406074-13406093 Msa1235400:CDS 65.0%
!! GGGCTCGATGGGTTGTCACC+TGG + chr8_2:13408262-13408281 Msa1235400:CDS 65.0%
GTCACCGGCGTCTACGGCGA+CGG + chr8_2:13405677-13405696 Msa1235400:CDS 70.0%
CGACGGCGGCGTCTACGTCT+GGG + chr8_2:13405694-13405713 Msa1235400:CDS 70.0%
!! ATGGGTGCCGGTGCGGGTAC+CGG + chr8_2:13405945-13405964 Msa1235400:CDS 70.0%
GGGTCGGGCGAGCAAGCTGT+AGG + chr8_2:13408824-13408843 Msa1235400:CDS 70.0%
ACCGGCGTCTACGGCGACGG+CGG + chr8_2:13405680-13405699 Msa1235400:CDS 75.0%
GCGACGGCGGCGTCTACGTC+TGG + chr8_2:13405693-13405712 Msa1235400:CDS 75.0%
! GCCGCCGTCGCCGTAGACGC+CGG - chr8_2:13405684-13405703 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 13405138 13409261 13405138 ID=Msa1235400;Name=Msa1235400
chr8_2 mRNA 13405138 13409261 13405138 ID=Msa1235400-mRNA-1;Parent=Msa1235400;Name=Msa1235400-mRNA-1;_AED=0.05;_eAED=0.05;_QI=438|1|1|1|1|1|6|178|732
chr8_2 exon 13405138 13406304 13405138 ID=Msa1235400-mRNA-1:exon:5151;Parent=Msa1235400-mRNA-1
chr8_2 exon 13406396 13406581 13406396 ID=Msa1235400-mRNA-1:exon:5152;Parent=Msa1235400-mRNA-1
chr8_2 exon 13407184 13407644 13407184 ID=Msa1235400-mRNA-1:exon:5153;Parent=Msa1235400-mRNA-1
chr8_2 exon 13407854 13408012 13407854 ID=Msa1235400-mRNA-1:exon:5154;Parent=Msa1235400-mRNA-1
chr8_2 exon 13408095 13408446 13408095 ID=Msa1235400-mRNA-1:exon:5155;Parent=Msa1235400-mRNA-1
chr8_2 exon 13408772 13409261 13408772 ID=Msa1235400-mRNA-1:exon:5156;Parent=Msa1235400-mRNA-1
chr8_2 five_prime_UTR 13405138 13405575 13405138 ID=Msa1235400-mRNA-1:five_prime_utr;Parent=Msa1235400-mRNA-1
chr8_2 CDS 13405576 13406304 13405576 ID=Msa1235400-mRNA-1:cds;Parent=Msa1235400-mRNA-1
chr8_2 CDS 13406396 13406581 13406396 ID=Msa1235400-mRNA-1:cds;Parent=Msa1235400-mRNA-1
chr8_2 CDS 13407184 13407644 13407184 ID=Msa1235400-mRNA-1:cds;Parent=Msa1235400-mRNA-1
chr8_2 CDS 13407854 13408012 13407854 ID=Msa1235400-mRNA-1:cds;Parent=Msa1235400-mRNA-1
chr8_2 CDS 13408095 13408446 13408095 ID=Msa1235400-mRNA-1:cds;Parent=Msa1235400-mRNA-1
chr8_2 CDS 13408772 13409083 13408772 ID=Msa1235400-mRNA-1:cds;Parent=Msa1235400-mRNA-1
chr8_2 three_prime_UTR 13409084 13409261 13409084 ID=Msa1235400-mRNA-1:three_prime_utr;Parent=Msa1235400-mRNA-1
Gene Sequence

>Msa1235400

ATGGCGGTTTCAACTATAGCGTTATACGCGAGTCCACCGAGTAGTGTGTGTTCTACACCGCATCAGATTAACTATGATTTCGAATTAGGATCTAGATCTTCGTCACCGGCGTCTACGGCGACGGCGGCGTCTACGTCTGGGAAATCGGTGATGGGTGGTTTATCGTGTTTGTTTTCATCTCCGACGGTGGTGAAGCAGCATGTTCCTTTTACTTCGAGTTTTTCCGGTGGTGGTGGTGATGAAGATGAATTGAAGGAGCTGAGTAGTTCGTTTTCGTATTCATTTTCACCGACGAAGTTTGGTGGATCTTGGAAGAGAGATCATAGTCCAGTTTCGGTTTTTCAGTGTCCTGTTTCGTGTAGTAGTAGCATGGGTGCCGGTGCGGGTACCGGAACAATTCGATCAGGGAGGGGAAGTACTGGTGGTGGGTTTTTTGATGGGTTTGTGAGAAGTGCTTTGGGTTCTTCTTGTTTGGATTATGATTCTACTGGTGTTAGATTACGCGGTGGTGGTGGTGGTGGTGAATTTGATGGTGTTGGTGGTGATTCTGGAATTGTGGATGAGTTGACTTTTAATTTGGATGATACTTTTGTGGAGGGTTGTGTTGGAATTGAGATTGAGCCTTATGCTAAGAAGTTGTTGATGAATGCTCAGTTAAGACATAAGATCTTTTGTGAAGAGTTTGTTATTAAGGCCTTTTGTGAAGCTGAGAAAGCTCATAGAGGACAGATGCGAGCTAGTGGCGATCCGTATTTGCAGCATTGTTTGGAAACTGCTGTGTTGTTGGCTTTGATCGGTGCGAATTCAACAGTAGTTGCTGCTGGGCTTTTGCATGATACAGTTGATGATGCATTTCTTACTTATGATTATATATACGGGATGTTTGGAGCTGGAGTTGCTGATTTAGTTGAAGGGGTTTCTAAACTGAGTCACTTAAGCAAGCTGGCTCGAGACAATAATACAGCTAGCAAATCTGTTGAAGCTGACCGCCTGCATACAATGTTCCTTGCAATGGCAGATGCAAGAGCTGTCCTCATTAAATTGGCTGATCGATTACATAATATGATGACACTAGATGCATTACCGGTTGCCAAGCAGCAGAGGTTTGCAAAGGAAACTTTGGAGATTTTTGCACCTTTGGCCAACCGATTAGGAATAGCTAATTGGAAGGAACAATTAGAAAATTTATGTTTTAAGCATCTCAACCCTGTACAGCACAAAGAGCTTTCGTCAAAGCTTGTGGAATCGTATGATGACGCAATGATTGCTTCTGCAATAGAAAGATTAGAGCAAGCACTCAAAGATGAAGGCATTTCTTATCATGTCATTTCTGGACGGCACAAGAGCTTGTATAGCGTTTATTGCAAAATATTAAAGAAAAAACTAAGCATAGATGATATCCATGACATTTATGGGCTGCGCTTGATTGTTGATAAGGAGGAAGATTGTTACAAAGCCTTAGAAGTTGTTCACCGGTTATGGTCTGAGGTGCATGGGAAACTGAAAGATTACATACATTGCCCCAAGTTCAATGGTTATCAATCTCTGCACACTGTGGTGATGGGTGAAGGCAAGGTTCCCCTTGAAGTACAAATTCGAACAAAAGATATGCATTTGCAAGCAGAATTTGGATTCGCTGCTCATTGGAGGTACAAGGAAGATCATTGTCAACTTTCTTCATATGTGCTTCAGATGGTTGAGTGGGCTCGATGGGTTGTCACCTGGCAGTGCGAAGCAATGAGTAAAGATTCCACTTCTGTTGGATTTGTCGATTCAATCAAGCCACCTTGCAAGTTCCCTTCTCATGCTGATAACTGTCCATATTCTTACAAGCCTGATTGCGAGCAGGATGGACCTGTGTTTGTTATCATGATTGAGAATGACAAGATGTCTGTCCAAGAATTTTGTGCAAACTCAACAGTACTAGATTTGTTGGAGAGGGTCGGGCGAGCAAGCTGTAGGTTGACAACATATAGGTTCCCTCTGAAGGAAGAATTGAGGCCAAGACTGAATCACAAGCCTGTAAGTGATCCAAATTGCAAGTTGAAGATGGGAGATGTGATCGAGCTTACACCAGCCATACCTGACAAGTATCTGACCGAATATAGGGAAGAAATTCAGCGAATGTATGATCGCGGGCTAACTGTATCAAGCATGGGAACTACTGCTACTGCAAGCAGCATGGTTGGCACTAGTTGA

Protein sequence

>Msa1235400

MAVSTIALYASPPSSVCSTPHQINYDFELGSRSSSPASTATAASTSGKSVMGGLSCLFSSPTVVKQHVPFTSSFSGGGGDEDELKELSSSFSYSFSPTKFGGSWKRDHSPVSVFQCPVSCSSSMGAGAGTGTIRSGRGSTGGGFFDGFVRSALGSSCLDYDSTGVRLRGGGGGGEFDGVGGDSGIVDELTFNLDDTFVEGCVGIEIEPYAKKLLMNAQLRHKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLALIGANSTVVAAGLLHDTVDDAFLTYDYIYGMFGAGVADLVEGVSKLSHLSKLARDNNTASKSVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPVAKQQRFAKETLEIFAPLANRLGIANWKEQLENLCFKHLNPVQHKELSSKLVESYDDAMIASAIERLEQALKDEGISYHVISGRHKSLYSVYCKILKKKLSIDDIHDIYGLRLIVDKEEDCYKALEVVHRLWSEVHGKLKDYIHCPKFNGYQSLHTVVMGEGKVPLEVQIRTKDMHLQAEFGFAAHWRYKEDHCQLSSYVLQMVEWARWVVTWQCEAMSKDSTSVGFVDSIKPPCKFPSHADNCPYSYKPDCEQDGPVFVIMIENDKMSVQEFCANSTVLDLLERVGRASCRLTTYRFPLKEELRPRLNHKPVSDPNCKLKMGDVIELTPAIPDKYLTEYREEIQRMYDRGLTVSSMGTTATASSMVGTS*