AlfalfaGEDB | Msa1212900

M. sativa cultivar zhongmu-4 / Msa1212900

KEGG: -
GO: -
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1212900	sp\|Q9LEZ3\|BIM1_ARATH	45.759	507	213	18	1	489	1	463	3.09e-102	319

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1212900	A0A072USK3	96.741	491	12	3	1	489	1	489	0.0	970

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TFs/TRs:

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Gene ID	Type	Classification
Msa1212900	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1212900	Msa1260420	0.831931	1.262110e-55	-8.615850e-47
Msa1212900	Msa1331110	0.828051	1.114209e-54	-8.615850e-47
Msa1212900	Msa1331170	0.978158	3.046871e-145	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1212900	MtrunA17_Chr4g0061791	96.741	491	12	3	1	489	1	489	0.0	970
Msa1212900	MtrunA17_Chr5g0420701	47.034	236	110	5	256	489	35	257	9.12e-59	197
Msa1212900	MtrunA17_Chr7g0220371	54.422	147	52	4	253	396	37	171	4.06e-38	142

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1212900	AT5G08130.5	45.972	509	212	18	1	489	1	466	6.47e-104	321
Msa1212900	AT5G08130.7	45.957	507	211	18	1	489	1	462	9.99e-104	320
Msa1212900	AT5G08130.8	45.776	509	214	18	1	489	1	467	1.95e-103	320
Msa1212900	AT5G08130.2	45.759	507	213	18	1	489	1	463	3.14e-103	319
Msa1212900	AT5G08130.4	45.759	507	213	18	1	489	1	463	3.14e-103	319
Msa1212900	AT5G08130.6	45.472	508	213	18	1	489	1	463	1.74e-101	314
Msa1212900	AT5G08130.3	46.966	379	154	13	120	489	2	342	4.51e-82	260
Msa1212900	AT5G08130.1	46.702	379	156	13	120	489	2	343	1.87e-81	259
Msa1212900	AT1G69010.1	41.132	265	118	10	227	487	8	238	1.31e-40	148
Msa1212900	AT5G38860.2	44.828	174	64	5	254	404	21	185	5.91e-34	127

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Find 204 sgRNAs with CRISPR-Local

Find 494 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGCTTGTATCAGTAT+GGG	0.573845	8_1:+72921769	None:intergenic
AAAGAGCTCACCATTGAAGG+AGG	0.629369	8_1:-72923155	Msa1212900:CDS
AAATGATAAATGTTGTAATT+AGG	0.289965	8_1:-72922464	Msa1212900:three_prime_UTR
AAATTATCTCTGAATTCTGA+AGG	0.565839	8_1:+72929748	None:intergenic
AAATTTGGTTGGGAAGAAAT+AGG	0.321463	8_1:+72923320	None:intergenic
AACATTGCTGTTTGCTTCAA+AGG	0.352246	8_1:-72923477	Msa1212900:CDS
AACTCAACAGAGAAAGTTAA+AGG	0.261850	8_1:-72930554	Msa1212900:five_prime_UTR
AAGACAATAGATCATCCGTC+TGG	0.528087	8_1:-72923368	Msa1212900:CDS
AAGATCCTTCTAAGAATCAA+AGG	0.539351	8_1:-72922101	Msa1212900:three_prime_UTR
AAGCTCTTGATTTGCGATTA+AGG	0.234916	8_1:-72929907	Msa1212900:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTCAACAGAGAAAGTTAA+AGG	-	chr8_1:72921601-72921620	Msa1212900:three_prime_UTR	30.0%
ACTCAACAGAGAAAGTTAAA+GGG	-	chr8_1:72921602-72921621	Msa1212900:three_prime_UTR	30.0%
AGTGATTATAAGAAAAAGCG+CGG	-	chr8_1:72921695-72921714	Msa1212900:three_prime_UTR	30.0%
GAAACCGTAATTCTCTTATT+AGG	+	chr8_1:72922338-72922357	None:intergenic	30.0%
TGTATTTAATCACAGGATCT+GGG	-	chr8_1:72923003-72923022	Msa1212900:three_prime_UTR	30.0%
CAGTCCATAAATAAAAAGCA+TGG	+	chr8_1:72923029-72923048	None:intergenic	30.0%
CCATTTGATGTTAAATCCTT+CGG	+	chr8_1:72923106-72923125	None:intergenic	30.0%
AACTACAAGTCCATCAAAAT+GGG	+	chr8_1:72923195-72923214	None:intergenic	30.0%
TAAGGAAATCTCACAGTATA+GGG	+	chr8_1:72923904-72923923	None:intergenic	30.0%
TTAAGGAAATCTCACAGTAT+AGG	+	chr8_1:72923905-72923924	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	72921527	72930650	72921527	ID=Msa1212900;Name=Msa1212900
chr8_1	mRNA	72921527	72930650	72921527	ID=Msa1212900-mRNA-1;Parent=Msa1212900;Name=Msa1212900-mRNA-1;_AED=0.04;_eAED=0.04;_QI=747\|0.90\|0.83\|1\|0.72\|0.58\|12\|1464\|489
chr8_1	exon	72921527	72922130	72921527	ID=Msa1212900-mRNA-1:exon:24722;Parent=Msa1212900-mRNA-1
chr8_1	exon	72922258	72923567	72922258	ID=Msa1212900-mRNA-1:exon:24721;Parent=Msa1212900-mRNA-1
chr8_1	exon	72923926	72924021	72923926	ID=Msa1212900-mRNA-1:exon:24720;Parent=Msa1212900-mRNA-1
chr8_1	exon	72924104	72924173	72924104	ID=Msa1212900-mRNA-1:exon:24719;Parent=Msa1212900-mRNA-1
chr8_1	exon	72924688	72924796	72924688	ID=Msa1212900-mRNA-1:exon:24718;Parent=Msa1212900-mRNA-1
chr8_1	exon	72925301	72925428	72925301	ID=Msa1212900-mRNA-1:exon:24717;Parent=Msa1212900-mRNA-1
chr8_1	exon	72925550	72925649	72925550	ID=Msa1212900-mRNA-1:exon:24716;Parent=Msa1212900-mRNA-1
chr8_1	exon	72926843	72927017	72926843	ID=Msa1212900-mRNA-1:exon:24715;Parent=Msa1212900-mRNA-1
chr8_1	exon	72927027	72927244	72927027	ID=Msa1212900-mRNA-1:exon:24714;Parent=Msa1212900-mRNA-1
chr8_1	exon	72929401	72929487	72929401	ID=Msa1212900-mRNA-1:exon:24713;Parent=Msa1212900-mRNA-1
chr8_1	exon	72929608	72930083	72929608	ID=Msa1212900-mRNA-1:exon:24712;Parent=Msa1212900-mRNA-1
chr8_1	exon	72930343	72930650	72930343	ID=Msa1212900-mRNA-1:exon:24711;Parent=Msa1212900-mRNA-1
chr8_1	five_prime_UTR	72930343	72930650	72930343	ID=Msa1212900-mRNA-1:five_prime_utr;Parent=Msa1212900-mRNA-1
chr8_1	five_prime_UTR	72929645	72930083	72929645	ID=Msa1212900-mRNA-1:five_prime_utr;Parent=Msa1212900-mRNA-1
chr8_1	CDS	72929608	72929644	72929608	ID=Msa1212900-mRNA-1:cds;Parent=Msa1212900-mRNA-1
chr8_1	CDS	72929401	72929487	72929401	ID=Msa1212900-mRNA-1:cds;Parent=Msa1212900-mRNA-1
chr8_1	CDS	72927027	72927244	72927027	ID=Msa1212900-mRNA-1:cds;Parent=Msa1212900-mRNA-1
chr8_1	CDS	72926843	72927017	72926843	ID=Msa1212900-mRNA-1:cds;Parent=Msa1212900-mRNA-1
chr8_1	CDS	72925550	72925649	72925550	ID=Msa1212900-mRNA-1:cds;Parent=Msa1212900-mRNA-1
chr8_1	CDS	72925301	72925428	72925301	ID=Msa1212900-mRNA-1:cds;Parent=Msa1212900-mRNA-1
chr8_1	CDS	72924688	72924796	72924688	ID=Msa1212900-mRNA-1:cds;Parent=Msa1212900-mRNA-1
chr8_1	CDS	72924104	72924173	72924104	ID=Msa1212900-mRNA-1:cds;Parent=Msa1212900-mRNA-1
chr8_1	CDS	72923926	72924021	72923926	ID=Msa1212900-mRNA-1:cds;Parent=Msa1212900-mRNA-1
chr8_1	CDS	72923118	72923567	72923118	ID=Msa1212900-mRNA-1:cds;Parent=Msa1212900-mRNA-1
chr8_1	three_prime_UTR	72922258	72923117	72922258	ID=Msa1212900-mRNA-1:three_prime_utr;Parent=Msa1212900-mRNA-1
chr8_1	three_prime_UTR	72921527	72922130	72921527	ID=Msa1212900-mRNA-1:three_prime_utr;Parent=Msa1212900-mRNA-1

Gene Sequence

>Msa1212900

ATGGAGCTTCCTCAAGCACGTTCTTATGGAGCCGAAGGAACAGGGAGGAAATCGACGCATGATTTTCTGTCGCTATACAGTAGTAATTCAACTGCCGAACAAGATCCAAGGCCATCTGCTCAAGCAAGTTTCCTCAAGACCCATGATTTCTTGCGGCCACTAGAGGAGGTAGAAGCCAAATCCAGTGCCAAGGAAGAAGCCACAGATGAAATCTCATCGGTGGTTGAGAAGCAACCCCCTTTAGCAACACCAGCTTCATCAGTTGAGCACCTCTTACCTGGAGGAATTGGGACTTATAGTATCAGCCACATTAATTCCTGCGTGAATAATAATAATCAAAGGGCAGAAGCATCATCACTTTTCACTGTGCATCAAGCAACTAGTGCGGATAGAAATGATGACAACTCCAACTGCAGCTCACATACTTCAAGCGGTTTCACATTGTGGGAAGAGTCTGAGATTAGAAAGGGAAAGACAGGAAAGGAGAATAATGTTGGGGACAAACCCATTATAGGAGATTCTGCTGCTAAGTTAGGTCAGTGGACATTGAAGGAGCGAACGTCTCAATCGTTTTCTAACAATCATCATGGCAGCTTCAACTCTCGCTCTTCATCTCAGACAACTGGACAGAAGAACCAGAGTTTTATGGAAATGATGAAATCTGCACAGGATTGTGCCCAGGATGAAGAGCTAGAAAATGAAGGAACGTTTTTTCTCAAGAGAGAATCCTCGAATGTTCAAAGAGGAGAACTAAGGGTGAGAGTGGACGGCAAGAGTACCGATCAAAAGCCAAACACACCAAGATCAAAACATTCTGCAACAGAGCAGCGAAGAAGAAGCAAAATTAATGACAGGTTTCAGATGCTACGAGAGCTTATTCCACACAGTGATCAAAAGAGGGACAAAGCATCCTTTTTGTTAGAGGTCATTGAGTACATTCACTTTTTACAAGAGAAGGTTCATAAGTATGAAGGTTCATTCCAAGGTTGGAATAACGAGCCAGAAAAACTGATGCCATGGAGAAATAATGACAGGCCAGCAGAAAGTTTTCAATCTCGTGGCGCAAATGGTGGGTCTAATCCATCTCCAACATTGCTGTTTGCTTCAAAGGTTGACGAGAAAAACATCACCATCTCCCCAACAACTCATGGGGGTATCCATAATGTAGAATCTGGCTTGAGCACAACAACGGCCATGAAGACAATAGATCATCCGTCTGGAATAACAAACAAGGCTTTTCCAAGTCCTATTTCTTCCCAACCAAATTTCTTAACTTCAACCCAAATCGGAGGTTTAGGTGGAGCAGTGTCTCAGCTCAGACGTAGATTATCATCTGATGCAGAGAACACCAATTATCAACCTTCAGTAGAATCTCAGACTATGACTTCAACCAGTGAAAAGCTGAAAGAGAAAGAGCTCACCATTGAAGGAGGTGCCATTAGCATATCAAGTGTGTACTCACAAGGGTGA

Protein sequence

>Msa1212900

MELPQARSYGAEGTGRKSTHDFLSLYSSNSTAEQDPRPSAQASFLKTHDFLRPLEEVEAKSSAKEEATDEISSVVEKQPPLATPASSVEHLLPGGIGTYSISHINSCVNNNNQRAEASSLFTVHQATSADRNDDNSNCSSHTSSGFTLWEESEIRKGKTGKENNVGDKPIIGDSAAKLGQWTLKERTSQSFSNNHHGSFNSRSSSQTTGQKNQSFMEMMKSAQDCAQDEELENEGTFFLKRESSNVQRGELRVRVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWNNEPEKLMPWRNNDRPAESFQSRGANGGSNPSPTLLFASKVDEKNITISPTTHGGIHNVESGLSTTTAMKTIDHPSGITNKAFPSPISSQPNFLTSTQIGGLGGAVSQLRRRLSSDAENTNYQPSVESQTMTSTSEKLKEKELTIEGGAISISSVYSQG*