AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1331170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1331170 MtrunA17_Chr4g0061791 97.143 490 11 2 1 488 1 489 0.0 978
Msa1331170 MtrunA17_Chr5g0420701 47.034 236 110 5 255 488 35 257 8.73e-59 197
Msa1331170 MtrunA17_Chr7g0220371 54.422 147 52 4 252 395 37 171 4.04e-38 142
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1331170 AT5G08130.7 46.548 507 207 18 1 488 1 462 5.73e-105 323
Msa1331170 AT5G08130.5 46.365 509 209 18 1 488 1 466 1.57e-104 322
Msa1331170 AT5G08130.2 46.351 507 209 18 1 488 1 463 1.73e-104 322
Msa1331170 AT5G08130.4 46.351 507 209 18 1 488 1 463 1.73e-104 322
Msa1331170 AT5G08130.8 46.169 509 211 18 1 488 1 467 5.92e-104 321
Msa1331170 AT5G08130.6 45.850 506 213 18 1 488 1 463 3.56e-102 316
Msa1331170 AT5G08130.3 46.966 379 154 13 119 488 2 342 4.43e-82 260
Msa1331170 AT5G08130.1 46.702 379 156 13 119 488 2 343 2.27e-81 258
Msa1331170 AT1G69010.1 41.132 265 118 10 226 486 8 238 1.41e-40 148
Msa1331170 AT5G38860.2 44.828 174 64 5 253 403 21 185 6.27e-34 127
Msa1331170 AT5G38860.1 37.549 253 106 9 253 481 21 245 2.17e-33 128

Find 204 sgRNAs with CRISPR-Local

Find 497 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTCTGTGATTGAAGATTT+TGG 0.130907 8_4:-50612565 Msa1331170:five_prime_UTR
TAAGAAGCAAATTGAAATTA+TGG 0.188070 8_4:+50605377 None:intergenic
GAAACCGTAATTCTCTTATT+AGG 0.205454 8_4:+50612347 None:intergenic
TTCTTCCTTGGCACTGGATT+TGG 0.224123 8_4:+50609818 None:intergenic
GAGCATTTGTGGATAGAAAT+TGG 0.227383 8_4:-50605633 Msa1331170:three_prime_UTR
AAGCTCTTGATTTGCGATTA+AGG 0.234916 8_4:-50612434 Msa1331170:five_prime_UTR
TTCATGGTTACCTCCTATAA+TGG 0.237349 8_4:+50609479 None:intergenic
CACCTCTTACCTGGAGGAAT+TGG 0.255162 8_4:-50609726 Msa1331170:CDS
AACTCAACAGAGAAAGTTAA+AGG 0.261850 8_4:-50613081 Msa1331170:five_prime_UTR
TGGGTTGAAGTTAAGAAATT+TGG 0.265205 8_4:+50605952 None:intergenic
CTTCCTCAAGCACGTTCTTA+TGG 0.267366 8_4:-50612143 Msa1331170:CDS
ATAAATATTTCCACAATATA+TGG 0.267977 8_4:-50605239 Msa1331170:three_prime_UTR
AAATGATAAATGTTGTAATT+AGG 0.289965 8_4:-50605111 Msa1331170:three_prime_UTR
TTCTACTGAAGGTTGATAAT+TGG 0.293752 8_4:+50605864 None:intergenic
CACATTGGCATTGGTATGTT+TGG 0.295978 8_4:+50604915 None:intergenic
ATGAATTGTTTGAATGGAAC+AGG 0.302336 8_4:+50605282 None:intergenic
AGAATTTCGAGAAAAGAAAA+TGG 0.303491 8_4:+50605137 None:intergenic
CTCCACCTAAACCTCCGATT+TGG 0.310407 8_4:+50605932 None:intergenic
AAGTTGTGTTGGACATGATA+TGG 0.317695 8_4:-50605670 Msa1331170:three_prime_UTR
AAATTTGGTTGGGAAGAAAT+AGG 0.321463 8_4:+50605967 None:intergenic
ATTACGGTTTCTACTAAATT+CGG 0.322606 8_4:-50612335 Msa1331170:five_prime_UTR
TTGTAATTAGGATGCCAAAT+TGG 0.328639 8_4:-50605099 Msa1331170:three_prime_UTR
CTTAGTTTGTTGGGATCCTT+AGG 0.342893 8_4:-50604501 Msa1331170:three_prime_UTR
TGAATTTACCTCTAACAAAA+AGG 0.343203 8_4:+50606742 None:intergenic
ATCTTCCTTTGATTCTTAGA+AGG 0.344596 8_4:+50604743 None:intergenic
TTCATCTGTGGCTTCTTCCT+TGG 0.345587 8_4:+50609806 None:intergenic
TGTGGCTTCTTCCTTGGCAC+TGG 0.347343 8_4:+50609812 None:intergenic
AACATTGCTGTTTGCTTCAA+AGG 0.352246 8_4:-50606124 Msa1331170:CDS
TCAACCCAAATCGGAGGTTT+AGG 0.354794 8_4:-50605937 Msa1331170:CDS
TCAAGCCAGATTCTACATTA+TGG 0.356652 8_4:+50606055 None:intergenic
GTTGGGGACAAACCCATTAT+AGG 0.362746 8_4:-50609492 Msa1331170:CDS
ATGTAGTGTCTTAGTTTGTT+GGG 0.370568 8_4:-50604510 Msa1331170:three_prime_UTR
TCATGGTTACCTCCTATAAT+GGG 0.372435 8_4:+50609480 None:intergenic
CATGTAGTGTCTTAGTTTGT+TGG 0.372497 8_4:-50604511 Msa1331170:three_prime_UTR
ACACATGCCTTGCAGAGTTC+AGG 0.377988 8_4:-50605002 Msa1331170:three_prime_UTR
GGGGTATTTATTTCCTGTGC+TGG 0.378434 8_4:-50604566 Msa1331170:three_prime_UTR
TTTATCACAGGCTAGCATTT+CGG 0.379312 8_4:-50604973 Msa1331170:three_prime_UTR
CGGATGATCTATTGTCTTCA+TGG 0.382464 8_4:+50606020 None:intergenic
TCAACCTAATAAGAGAATTA+CGG 0.385828 8_4:-50612351 Msa1331170:five_prime_UTR
TTCTGTTTGCAGCCTAAACT+TGG 0.389433 8_4:-50605477 Msa1331170:three_prime_UTR
TCCACCTAAACCTCCGATTT+GGG 0.392555 8_4:+50605933 None:intergenic
GCAGATTCTGCTGCTAAGTT+AGG 0.392981 8_4:-50608278 Msa1331170:intron
CAATCACTCAATTATCATTA+CGG 0.400967 8_4:-50612869 Msa1331170:intron
ACAACTTCAAAATAGTATAA+AGG 0.408201 8_4:+50605686 None:intergenic
CATCCCCTAGTGAGCATTTG+TGG 0.408785 8_4:-50605644 Msa1331170:three_prime_UTR
AATCGCAAATCAAGAGCTTA+AGG 0.410435 8_4:+50612438 None:intergenic
CAAAGTAAATGTGCTATACT+TGG 0.413343 8_4:-50605045 Msa1331170:three_prime_UTR
GTACCTTGAGCAGATGGCCT+TGG 0.414119 8_4:+50611927 None:intergenic
TTCTTAACTTCAACCCAAAT+CGG 0.419263 8_4:-50605946 Msa1331170:CDS
TGTATAATGAATTGTTTGAA+TGG 0.421879 8_4:+50605276 None:intergenic
TGCAGCGAAAGATGAGGTCT+TGG 0.423397 8_4:+50613051 None:intergenic
TTGTTTACTTGACCTTTCCT+TGG 0.424889 8_4:-50604200 Msa1331170:three_prime_UTR
CAATCTCGTGGCGCAAATGG+TGG 0.441241 8_4:-50606162 Msa1331170:CDS
AATCTTGAAAAGTATCTCAT+AGG 0.441412 8_4:+50604222 None:intergenic
GAATATATAAATACATTAGT+AGG 0.441540 8_4:+50605546 None:intergenic
ACCTCTTACCTGGAGGAATT+GGG 0.442515 8_4:-50609725 Msa1331170:CDS
CTGGCTCGTTATTCCAACCT+TGG 0.443215 8_4:+50606590 None:intergenic
AGATGGCCTTGGATCTTGTT+CGG 0.448814 8_4:+50611938 None:intergenic
ATTTCGGTGCAAATTGAACT+TGG 0.449045 8_4:-50604957 Msa1331170:three_prime_UTR
CGCTCTGGCTCTAGAGTCAC+TGG 0.450006 8_4:-50604719 Msa1331170:three_prime_UTR
GGTATCCATAATGTAGAATC+TGG 0.451732 8_4:-50606060 Msa1331170:CDS
TCAGTTGAGCACCTCTTACC+TGG 0.452136 8_4:-50609735 Msa1331170:CDS
ATTACCTCTTTGAACATTCG+AGG 0.454838 8_4:+50607943 None:intergenic
ACAGGAAAGGAGAATAATGT+TGG 0.460228 8_4:-50609510 Msa1331170:CDS
GGTTGGGAAGAAATAGGACT+TGG 0.461704 8_4:+50605973 None:intergenic
TTCAAGCGGTTTCACATTGT+GGG 0.462528 8_4:-50609559 Msa1331170:CDS
ATGAAGCTGGTGTTGCTAAA+GGG 0.464217 8_4:+50609757 None:intergenic
TCTATCCACAAATGCTCACT+AGG 0.466076 8_4:+50605639 None:intergenic
GCTGTAAATTAGTAAACTCT+TGG 0.466747 8_4:-50604375 Msa1331170:three_prime_UTR
GCTATACTTGGACAGGTTGT+TGG 0.468086 8_4:-50605033 Msa1331170:three_prime_UTR
GGATCAACCTAGCATGTTGT+TGG 0.470465 8_4:-50605218 Msa1331170:three_prime_UTR
ACCATCTCCCCAACAACTCA+TGG 0.472821 8_4:-50606084 Msa1331170:CDS
CTTCAAGCGGTTTCACATTG+TGG 0.473695 8_4:-50609560 Msa1331170:CDS
TGAAGTTAAGAAATTTGGTT+GGG 0.473775 8_4:+50605957 None:intergenic
ACTTGATACAATAGGACAAC+TGG 0.473797 8_4:-50608067 Msa1331170:intron
TGATTATCGAACGACCTTTG+TGG 0.474042 8_4:-50612532 Msa1331170:five_prime_UTR
GATTATTTACAGGAGAACTA+AGG 0.474437 8_4:-50607433 Msa1331170:intron
TCCCAATTCCTCCAGGTAAG+AGG 0.482696 8_4:+50609724 None:intergenic
GAGATTAGAAAGGGAAAGAC+AGG 0.483551 8_4:-50609528 Msa1331170:CDS
AGTGAAGTAAGTCCAAGTTT+AGG 0.484101 8_4:+50605465 None:intergenic
GCTAATGGCACCTCCTTCAA+TGG 0.484672 8_4:+50605792 None:intergenic
CTAGTGGCCGCAAGAAATCA+TGG 0.484886 8_4:+50609853 None:intergenic
CTAAATATATATAATTATAG+AGG 0.485547 8_4:-50604442 Msa1331170:three_prime_UTR
CAGGAAAGGAGAATAATGTT+GGG 0.486926 8_4:-50609509 Msa1331170:CDS
TTTGAAGCAAACAGCAATGT+TGG 0.487282 8_4:+50606126 None:intergenic
GGAAGAGTCTGAGATTAGAA+AGG 0.487727 8_4:-50609538 Msa1331170:CDS
CGAGATTGAAAACTTTCTGC+TGG 0.488725 8_4:+50606177 None:intergenic
TTTCAATCTCGTGGCGCAAA+TGG 0.497489 8_4:-50606165 Msa1331170:CDS
GAGAAAGAGCTCACCATTGA+AGG 0.497721 8_4:-50605805 Msa1331170:CDS
TCATCATTTCCATAAAACTC+TGG 0.498591 8_4:+50608035 None:intergenic
ATGAAGGTTCATTCCAAGGT+TGG 0.500331 8_4:-50606603 Msa1331170:CDS
GGAGATGTGGCAGGTGATTG+TGG 0.501550 8_4:-50605612 Msa1331170:three_prime_UTR
TGCTGGATTATTATCCTGCA+TGG 0.504277 8_4:-50604549 Msa1331170:three_prime_UTR
GTTAGGTCAGTGGACATTGA+AGG 0.508165 8_4:-50608261 Msa1331170:CDS
ACTCAACAGAGAAAGTTAAA+GGG 0.511879 8_4:-50613080 Msa1331170:five_prime_UTR
GCCTTGTTTGTTATTCCAGA+CGG 0.512631 8_4:+50606000 None:intergenic
TAAATGTGCTATACTTGGAC+AGG 0.513308 8_4:-50605040 Msa1331170:three_prime_UTR
GATGAAGCTGGTGTTGCTAA+AGG 0.513947 8_4:+50609756 None:intergenic
GCGTGAATAATAATAATCAA+AGG 0.514207 8_4:-50609674 Msa1331170:CDS
CCCATGAGTTGTTGGGGAGA+TGG 0.517548 8_4:+50606083 None:intergenic
CGTGAATAATAATAATCAAA+GGG 0.518006 8_4:-50609673 Msa1331170:intron
GAATTTCGAGAAAAGAAAAT+GGG 0.518677 8_4:+50605138 None:intergenic
ATGTAAACTATAACATAAAG+AGG 0.519364 8_4:+50605335 None:intergenic
TTGAAGTTAAGAAATTTGGT+TGG 0.519525 8_4:+50605956 None:intergenic
GCAGCGAAAGATGAGGTCTT+GGG 0.520455 8_4:+50613052 None:intergenic
GTACACACTTGATATGCTAA+TGG 0.523913 8_4:+50605777 None:intergenic
AAGACAATAGATCATCCGTC+TGG 0.528087 8_4:-50606015 Msa1331170:CDS
AATGCCAATGTGTGTTTCCA+AGG 0.530445 8_4:-50604904 Msa1331170:intron
TTGGAAACACACATTGGCAT+TGG 0.530708 8_4:+50604906 None:intergenic
TTCAGGAGTGGATTTATCAC+AGG 0.531531 8_4:-50604985 Msa1331170:three_prime_UTR
AATCAAAGGAAGATGCGCTC+TGG 0.532036 8_4:-50604734 Msa1331170:three_prime_UTR
TTTATTAGCTATCACAATGA+GGG 0.532937 8_4:+50604252 None:intergenic
TTCTCTGGTACGTAATTCAA+CGG 0.533332 8_4:+50612194 None:intergenic
TTCCACACAGTGATCAAAAG+AGG 0.537014 8_4:-50606775 Msa1331170:CDS
AAGATCCTTCTAAGAATCAA+AGG 0.539351 8_4:-50604748 Msa1331170:three_prime_UTR
CCATCTCCCCAACAACTCAT+GGG 0.540580 8_4:-50606083 Msa1331170:CDS
GAGAAGGTTCATAAGTATGA+AGG 0.541707 8_4:-50606619 Msa1331170:CDS
GAAGAAGCAAAATTAATGAC+AGG 0.542133 8_4:-50607334 Msa1331170:intron
GTGGACATCTATTCAGAGAA+AGG 0.545303 8_4:+50605441 None:intergenic
GATGAAGAGCTAGAAAATGA+AGG 0.546934 8_4:-50607989 Msa1331170:CDS
GCAAACAGCAATGTTGGAGA+TGG 0.547592 8_4:+50606132 None:intergenic
CTAGGTTGATCCATATATTG+TGG 0.548446 8_4:+50605229 None:intergenic
GAAGAGTCTGAGATTAGAAA+GGG 0.549063 8_4:-50609537 Msa1331170:CDS
GATTCTGTGAAATTTCTAGC+AGG 0.550131 8_4:-50612589 Msa1331170:five_prime_UTR
TCTCTTATTAGGTTGAAGAT+CGG 0.551105 8_4:+50612358 None:intergenic
AAGTATGAAGGTTCATTCCA+AGG 0.551145 8_4:-50606607 Msa1331170:CDS
AATCTCGTGGCGCAAATGGT+GGG 0.551190 8_4:-50606161 Msa1331170:CDS
TATACAGTACCTTGAGCAGA+TGG 0.553708 8_4:+50611921 None:intergenic
GGAAATGATGAAATCTGCAC+AGG 0.556382 8_4:-50608023 Msa1331170:CDS
TGCAGCTCACATACTTCAAG+CGG 0.558097 8_4:-50609573 Msa1331170:CDS
CTATCCACAAATGCTCACTA+GGG 0.558631 8_4:+50605640 None:intergenic
CAAAGCAGAGAAATAATGAC+AGG 0.558692 8_4:-50606200 Msa1331170:intron
AGCAACATGAATTGCACAAG+TGG 0.559497 8_4:+50605422 None:intergenic
GAACTAAGGGTGAGAGTGGA+CGG 0.560606 8_4:-50607419 Msa1331170:CDS
TGATTTCTTGCGGCCACTAG+AGG 0.563586 8_4:-50609850 Msa1331170:CDS
AATTGTTAGATGACTGTGGA+TGG 0.565285 8_4:+50605579 None:intergenic
AAATTATCTCTGAATTCTGA+AGG 0.565839 8_4:+50612275 None:intergenic
AGTTTACTAATTTACAGCAA+TGG 0.566532 8_4:+50604380 None:intergenic
ACCCAAATCGGAGGTTTAGG+TGG 0.566780 8_4:-50605934 Msa1331170:CDS
CTATAAGTCCCAATTCCTCC+AGG 0.567759 8_4:+50609717 None:intergenic
AGAAGCCAAATCCAGTGCCA+AGG 0.568313 8_4:-50609823 Msa1331170:CDS
AAAACAGCTTGTATCAGTAT+GGG 0.573845 8_4:+50604416 None:intergenic
TAAATAATGAGCTACGGAAG+AGG 0.574812 8_4:+50604285 None:intergenic
TCAAGACCCATGATTTCTTG+CGG 0.575342 8_4:-50609860 Msa1331170:CDS
ATTATTTACAGGAGAACTAA+GGG 0.578041 8_4:-50607432 Msa1331170:intron
ATAGTCTGAGATTCTACTGA+AGG 0.581921 8_4:+50605853 None:intergenic
AGGCTATAAATAATGAGCTA+CGG 0.582243 8_4:+50604279 None:intergenic
TGCCTTGCAGAGTTCAGGAG+TGG 0.584050 8_4:-50604997 Msa1331170:three_prime_UTR
CACCGATGAGATTTCATCTG+TGG 0.584148 8_4:+50609794 None:intergenic
ACAGTCAATCTCATCCATGC+AGG 0.585678 8_4:+50604535 None:intergenic
GCATTGGTATGTTTGGTCTG+AGG 0.586918 8_4:+50604922 None:intergenic
AATAGAAGCAATCCAAGGAA+AGG 0.589019 8_4:+50604188 None:intergenic
ATCTGCACAGGATTGTGCCC+AGG 0.592606 8_4:-50608011 Msa1331170:CDS
GCACGTTCTTATGGAGCCGA+AGG 0.594158 8_4:-50612134 Msa1331170:intron
GCAGGATAATAATCCAGCAC+AGG 0.595198 8_4:+50604553 None:intergenic
TTGATTATTATTATTCACGC+AGG 0.597539 8_4:+50609677 None:intergenic
TAAGGAAAGAATGAATGTAA+CGG 0.598378 8_4:+50604639 None:intergenic
TTTCTTGCGGCCACTAGAGG+AGG 0.598604 8_4:-50609847 Msa1331170:CDS
ATCCACTCCTGAACTCTGCA+AGG 0.600178 8_4:+50604995 None:intergenic
GCAAGAAATCATGGGTCTTG+AGG 0.600334 8_4:+50609862 None:intergenic
AGGTGCTCAACTGATGAAGC+TGG 0.601853 8_4:+50609744 None:intergenic
AGGAGAACTAAGGGTGAGAG+TGG 0.602089 8_4:-50607423 Msa1331170:CDS
ATTGAATTGTTAGATGACTG+TGG 0.605394 8_4:+50605575 None:intergenic
TTAACTTCAACCCAAATCGG+AGG 0.605590 8_4:-50605943 Msa1331170:CDS
TGAAGCTGGTGTTGCTAAAG+GGG 0.607506 8_4:+50609758 None:intergenic
TTGGCTTCTACCTCCTCTAG+TGG 0.607953 8_4:+50609837 None:intergenic
TGAAGTATGTGAGCTGCAGT+TGG 0.607956 8_4:+50609578 None:intergenic
TATTCACGCAGGAATTAATG+TGG 0.608444 8_4:+50609688 None:intergenic
TAGAAAGGGAAAGACAGGAA+AGG 0.608538 8_4:-50609523 Msa1331170:CDS
GCTCCATAAGAACGTGCTTG+AGG 0.609314 8_4:+50612140 None:intergenic
TAGTGGCCGCAAGAAATCAT+GGG 0.609935 8_4:+50609854 None:intergenic
GATCCAAGGCCATCTGCTCA+AGG 0.611922 8_4:-50611930 Msa1331170:intron
GTGGATAGAAATTGGAGATG+TGG 0.617637 8_4:-50605625 Msa1331170:three_prime_UTR
ATAGAAATTGGAGATGTGGC+AGG 0.617759 8_4:-50605621 Msa1331170:three_prime_UTR
ATATCAAGTGTGTACTCACA+AGG 0.619435 8_4:-50605769 Msa1331170:CDS
TGAATTGTTTGAATGGAACA+GGG 0.619907 8_4:+50605283 None:intergenic
AAAGAGCTCACCATTGAAGG+AGG 0.629369 8_4:-50605802 Msa1331170:CDS
CAACTGCCGAACAAGATCCA+AGG 0.629883 8_4:-50611944 Msa1331170:CDS
TATACCTTGGAAACACACAT+TGG 0.634078 8_4:+50604900 None:intergenic
CATCTCCCCAACAACTCATG+GGG 0.638824 8_4:-50606082 Msa1331170:CDS
CACAGATGAAATCTCATCGG+TGG 0.642838 8_4:-50609793 Msa1331170:CDS
AGCCACAGATGAAATCTCAT+CGG 0.643022 8_4:-50609796 Msa1331170:CDS
TCCACACAGTGATCAAAAGA+GGG 0.643944 8_4:-50606774 Msa1331170:CDS
GCTATCACAATGAGGGTGTG+AGG 0.644440 8_4:+50604259 None:intergenic
ACAGCTTGTATCAGTATGGG+AGG 0.645446 8_4:+50604419 None:intergenic
GAATCCTCGAATGTTCAAAG+AGG 0.645829 8_4:-50607947 Msa1331170:intron
GGGGACAAACCCATTATAGG+AGG 0.647556 8_4:-50609489 Msa1331170:intron
TCTGTGCGGAAACAGGAGCA+GGG 0.649932 8_4:-50612007 Msa1331170:intron
ATCTGGCTTGAGCACAACAA+CGG 0.650337 8_4:-50606043 Msa1331170:CDS
TTAGCAATTGACTTCCACAA+AGG 0.655989 8_4:+50612518 None:intergenic
GAATTAATAGAAGCAATCCA+AGG 0.657987 8_4:+50604183 None:intergenic
GAGCACTGCAGCGAAAGATG+AGG 0.658597 8_4:+50613045 None:intergenic
CGAAAGATGAGGTCTTGGGT+CGG 0.660416 8_4:+50613056 None:intergenic
TATATATTCACCCAGCCATG+AGG 0.661374 8_4:-50605532 Msa1331170:three_prime_UTR
CTGCTGCTAAGTTAGGTCAG+TGG 0.667387 8_4:-50608271 Msa1331170:CDS
AGGAAAGGAGAATAATGTTG+GGG 0.670249 8_4:-50609508 Msa1331170:CDS
TATCCACAAATGCTCACTAG+GGG 0.675975 8_4:+50605641 None:intergenic
TCCGTCTGGAATAACAAACA+AGG 0.684989 8_4:-50606001 Msa1331170:CDS
TATCAAGTGTGTACTCACAA+GGG 0.699426 8_4:-50605768 Msa1331170:CDS
TGTGCATCAAGCAACTAGTG+CGG 0.714634 8_4:-50609619 Msa1331170:CDS
GTTGAGCACCTCTTACCTGG+AGG 0.717651 8_4:-50609732 Msa1331170:CDS
ATCTCCCCAACAACTCATGG+GGG 0.722606 8_4:-50606081 Msa1331170:CDS
GAAGCTGGTGTTGCTAAAGG+GGG 0.738031 8_4:+50609759 None:intergenic
GTGCGGAAACAGGAGCAGGG+AGG 0.747996 8_4:-50612004 Msa1331170:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTATTATTAATTAATTTG+AGG + chr8_4:50606743-50606762 None:intergenic 10.0%
!!! TAAAATAAAAAACTATTTTC+AGG + chr8_4:50607151-50607170 None:intergenic 10.0%
!!! GATAATAAATAATTTTCATT+TGG + chr8_4:50608215-50608234 None:intergenic 10.0%
!!! GGATAATTTTTTAAAATAAT+GGG + chr8_4:50608628-50608647 None:intergenic 10.0%
!!! TGGATAATTTTTTAAAATAA+TGG + chr8_4:50608629-50608648 None:intergenic 10.0%
!! AAAATAAGATAAATAATTAC+AGG + chr8_4:50608658-50608677 None:intergenic 10.0%
!!! TATTTTTAACATTTTTTACT+CGG - chr8_4:50609180-50609199 Msa1331170:intron 10.0%
!! AAAGGAAAAAAAAAAAAAAA+AGG - chr8_4:50610266-50610285 Msa1331170:intron 10.0%
!!! TAATTTTTATCAATTATTTG+GGG - chr8_4:50612714-50612733 Msa1331170:intron 10.0%
!!! TTTTAAAATTAATTTTTGGA+AGG - chr8_4:50612742-50612761 Msa1331170:intron 10.0%
!!! TTTAAAATTAATTTTTGGAA+GGG - chr8_4:50612743-50612762 Msa1331170:intron 10.0%
!! CTAAATATATATAATTATAG+AGG - chr8_4:50612887-50612906 Msa1331170:five_prime_UTR 10.0%
!!! TATTTTTTTAACATTGATTT+TGG - chr8_4:50612993-50613012 Msa1331170:five_prime_UTR 10.0%
!! TGATTTGAATTAATATTGTT+TGG - chr8_4:50605279-50605298 Msa1331170:three_prime_UTR 15.0%
!! TATTATTATGCAAAATGATT+CGG - chr8_4:50605452-50605471 Msa1331170:three_prime_UTR 15.0%
!! TTATTTACAGTTGAATTATT+TGG + chr8_4:50605590-50605609 None:intergenic 15.0%
!! TTAATTAACAAAATTTCCTA+TGG - chr8_4:50605718-50605737 Msa1331170:three_prime_UTR 15.0%
!! CAAAATCTTTATATTCTTTA+AGG + chr8_4:50606450-50606469 None:intergenic 15.0%
!!! CTTAAAGAATATAAAGATTT+TGG - chr8_4:50606448-50606467 Msa1331170:intron 15.0%
!! TATTACTATATTCTTTCATA+TGG - chr8_4:50606505-50606524 Msa1331170:intron 15.0%
!! TTAAAACAATTGAAAGTTAA+TGG + chr8_4:50606532-50606551 None:intergenic 15.0%
!! TAGCTATTATTAGTTAATAA+TGG + chr8_4:50606676-50606695 None:intergenic 15.0%
!!! TTTTCATTTTTGGTTAAATA+CGG + chr8_4:50607294-50607313 None:intergenic 15.0%
!!! TTTTGTTTTCAAAATTCTTT+CGG - chr8_4:50607369-50607388 Msa1331170:CDS 15.0%
!! TATTTAAATGGAGAATAATA+AGG - chr8_4:50607940-50607959 Msa1331170:intron 15.0%
!! TTTACTTTAAATATACTTCT+AGG + chr8_4:50608390-50608409 None:intergenic 15.0%
!! ATTGAAATAAAACTTAAAAG+AGG + chr8_4:50609454-50609473 None:intergenic 15.0%
!!! ATTATTTACTGATTATTTAC+AGG - chr8_4:50609886-50609905 Msa1331170:intron 15.0%
!! TTTATTAGATTTATGGTTTA+TGG - chr8_4:50610343-50610362 Msa1331170:intron 15.0%
!! TTATTAGATTTATGGTTTAT+GGG - chr8_4:50610344-50610363 Msa1331170:intron 15.0%
!! GTTTAATCTAAATTATTTGT+AGG - chr8_4:50610661-50610680 Msa1331170:intron 15.0%
!! TCATGTTTATAAAGAAATAA+AGG + chr8_4:50610942-50610961 None:intergenic 15.0%
!! AATTTAAATCCATTAACAAT+AGG + chr8_4:50611066-50611085 None:intergenic 15.0%
!! GAATATATAAATACATTAGT+AGG + chr8_4:50611786-50611805 None:intergenic 15.0%
!! ATAAATATTTCCACAATATA+TGG - chr8_4:50612090-50612109 Msa1331170:intron 15.0%
!! AAATGATAAATGTTGTAATT+AGG - chr8_4:50612218-50612237 Msa1331170:five_prime_UTR 15.0%
!! TATAAAAAGACTTTACAAAA+GGG + chr8_4:50612468-50612487 None:intergenic 15.0%
!! TTATAAAAAGACTTTACAAA+AGG + chr8_4:50612469-50612488 None:intergenic 15.0%
!! ACAAATTAGATAATAATACA+TGG + chr8_4:50612537-50612556 None:intergenic 15.0%
!!! TTAAAATTAATTTTTGGAAG+GGG - chr8_4:50612744-50612763 Msa1331170:intron 15.0%
!!! TTCAATTTTTTGTTTCTTAG+TGG - chr8_4:50604498-50604517 Msa1331170:three_prime_UTR 20.0%
!! AATAAAATCATAACTACCTT+CGG + chr8_4:50605214-50605233 None:intergenic 20.0%
!! ATGTATGTAGTCTTTATTAT+AGG - chr8_4:50606037-50606056 Msa1331170:CDS 20.0%
!!! TTTTTGTTTATATTAGTGAC+CGG - chr8_4:50606098-50606117 Msa1331170:CDS 20.0%
!! TATAAGAGAATGAAAATGAA+AGG - chr8_4:50606127-50606146 Msa1331170:CDS 20.0%
!!! GAATTCAAATTTTCTTTGTA+AGG + chr8_4:50606269-50606288 None:intergenic 20.0%
!! AATTTCTTTCAATTTAACCA+AGG + chr8_4:50606295-50606314 None:intergenic 20.0%
!!! ATATATATTGTTTTCACTCA+TGG + chr8_4:50606405-50606424 None:intergenic 20.0%
!!! AGATTTTGGTGTTTTAATTT+TGG - chr8_4:50606462-50606481 Msa1331170:intron 20.0%
!!! GATTTTGGTGTTTTAATTTT+GGG - chr8_4:50606463-50606482 Msa1331170:intron 20.0%
!! ATATAGTAATACCATTATAC+TGG + chr8_4:50606496-50606515 None:intergenic 20.0%
!!! TAGTTAATAATGGAAAAATG+AGG + chr8_4:50606666-50606685 None:intergenic 20.0%
!!! AGTTTTCAAAACTATTTCTT+AGG + chr8_4:50607191-50607210 None:intergenic 20.0%
!!! TAAGAAATAGTTTTGAAAAC+TGG - chr8_4:50607190-50607209 Msa1331170:intron 20.0%
!!! ATACATATCGTTTTCATTTT+TGG + chr8_4:50607304-50607323 None:intergenic 20.0%
!! CGTGAATAATAATAATCAAA+GGG - chr8_4:50607656-50607675 Msa1331170:intron 20.0%
!! CATCTTCAAAAATTATTTCA+TGG + chr8_4:50607869-50607888 None:intergenic 20.0%
!!! AATTAAAGTGTTAGTATCTT+GGG + chr8_4:50608080-50608099 None:intergenic 20.0%
!!! AAATTAAAGTGTTAGTATCT+TGG + chr8_4:50608081-50608100 None:intergenic 20.0%
!! AATAGAGATAGAAAATGTTT+AGG - chr8_4:50608300-50608319 Msa1331170:intron 20.0%
!! ATAGAGATAGAAAATGTTTA+GGG - chr8_4:50608301-50608320 Msa1331170:intron 20.0%
!! ATGAAAATAACTGATTGAAA+GGG - chr8_4:50608569-50608588 Msa1331170:intron 20.0%
!! TAAATAATTACAGGTATGAT+TGG + chr8_4:50608649-50608668 None:intergenic 20.0%
!! CAAACATAAACAACTAAAAT+TGG + chr8_4:50608699-50608718 None:intergenic 20.0%
!!! ATTTGTTCCAATTATTTTCT+CGG - chr8_4:50608843-50608862 Msa1331170:intron 20.0%
!! AATTACATAACCATCTTAAA+AGG + chr8_4:50609214-50609233 None:intergenic 20.0%
!! AATTTGGCAACTATAATTAA+AGG + chr8_4:50609661-50609680 None:intergenic 20.0%
!!! AGTTTCATTCTTTTTTAGAA+AGG - chr8_4:50610248-50610267 Msa1331170:intron 20.0%
!! AATATTTGAATCAAACATGT+AGG - chr8_4:50610509-50610528 Msa1331170:intron 20.0%
!! ACAACTTCAAAATAGTATAA+AGG + chr8_4:50611646-50611665 None:intergenic 20.0%
!! TAAGAAGCAAATTGAAATTA+TGG + chr8_4:50611955-50611974 None:intergenic 20.0%
!! ATGTAAACTATAACATAAAG+AGG + chr8_4:50611997-50612016 None:intergenic 20.0%
!! TGTATAATGAATTGTTTGAA+TGG + chr8_4:50612056-50612075 None:intergenic 20.0%
!!! ATGATGCATATTATTTTGTT+GGG + chr8_4:50612859-50612878 None:intergenic 20.0%
!!! AATGATGCATATTATTTTGT+TGG + chr8_4:50612860-50612879 None:intergenic 20.0%
!!! TTTTTTAACATTGATTTTGG+TGG - chr8_4:50612996-50613015 Msa1331170:five_prime_UTR 20.0%
! CAATCACTCAATTATCATTA+CGG - chr8_4:50604460-50604479 Msa1331170:three_prime_UTR 25.0%
! AAACTCGAATTAGCATAATT+CGG + chr8_4:50604626-50604645 None:intergenic 25.0%
! TCAACCTAATAAGAGAATTA+CGG - chr8_4:50604978-50604997 Msa1331170:three_prime_UTR 25.0%
! ATTACGGTTTCTACTAAATT+CGG - chr8_4:50604994-50605013 Msa1331170:three_prime_UTR 25.0%
! AAATTATCTCTGAATTCTGA+AGG + chr8_4:50605057-50605076 None:intergenic 25.0%
!!! TTCAACGGAATTTTGAAATT+CGG + chr8_4:50605123-50605142 None:intergenic 25.0%
!!! AATTGAGATTCAAGTTTTGA+TGG - chr8_4:50605161-50605180 Msa1331170:three_prime_UTR 25.0%
! GTAGTATAAATTCTACATCA+CGG - chr8_4:50605553-50605572 Msa1331170:three_prime_UTR 25.0%
! ATTAACAAAATTTCCTATGG+TGG - chr8_4:50605721-50605740 Msa1331170:three_prime_UTR 25.0%
!! TTTTTGCTTATATTAGTGAC+TGG + chr8_4:50605989-50606008 None:intergenic 25.0%
! TAAGCAAAAATCCAATTTCT+AGG - chr8_4:50605999-50606018 Msa1331170:CDS 25.0%
! AATTGAATGAACCTAGAAAT+TGG + chr8_4:50606013-50606032 None:intergenic 25.0%
! TAAACAAAAATCCACTTTCT+AGG + chr8_4:50606088-50606107 None:intergenic 25.0%
! GAAAATTTGAATTCAAACCT+TGG - chr8_4:50606275-50606294 Msa1331170:intron 25.0%
!!! TTTACCACTTTTTGCATTTT+AGG - chr8_4:50606375-50606394 Msa1331170:intron 25.0%
! ATTTCCTAAAATGCAAAAAG+TGG + chr8_4:50606382-50606401 None:intergenic 25.0%
! AAATTCTTTCGGTTAATTGA+AGG - chr8_4:50607380-50607399 Msa1331170:CDS 25.0%
! TTGATTATTATTATTCACGC+AGG + chr8_4:50607655-50607674 None:intergenic 25.0%
! GCGTGAATAATAATAATCAA+AGG - chr8_4:50607655-50607674 Msa1331170:intron 25.0%
!!! AGCAAGAAGCATTATTTAAA+TGG - chr8_4:50607928-50607947 Msa1331170:intron 25.0%
!! ATGTTTAAAGCATAAAGTGT+AGG + chr8_4:50607988-50608007 None:intergenic 25.0%
!! ATTAAAGTGTTAGTATCTTG+GGG + chr8_4:50608079-50608098 None:intergenic 25.0%
! ACTAATCCTTGAAAAACATA+AGG - chr8_4:50608173-50608192 Msa1331170:intron 25.0%
! ATGAAATCATAAGAAAATGC+AGG + chr8_4:50608336-50608355 None:intergenic 25.0%
! CATGAAAATAACTGATTGAA+AGG - chr8_4:50608568-50608587 Msa1331170:intron 25.0%
! ATAAACAACTAAAATTGGCA+AGG + chr8_4:50608694-50608713 None:intergenic 25.0%
!! CGTTAATTAGTTAGATTTTG+AGG - chr8_4:50608936-50608955 Msa1331170:intron 25.0%
!!! ATCATTTTAACTTTGTGATG+AGG - chr8_4:50609608-50609627 Msa1331170:CDS 25.0%
!!! TCATTTTAACTTTGTGATGA+GGG - chr8_4:50609609-50609628 Msa1331170:CDS 25.0%
!!! GTGGTTTTAATATTATGTCT+CGG - chr8_4:50609762-50609781 Msa1331170:CDS 25.0%
! ATTATTTACAGGAGAACTAA+GGG - chr8_4:50609897-50609916 Msa1331170:intron 25.0%
! AATTCTATCACCATATTAGT+AGG + chr8_4:50610030-50610049 None:intergenic 25.0%
! GCAGTTCATAATTAAGAAAA+GGG + chr8_4:50610109-50610128 None:intergenic 25.0%
! TGCAGTTCATAATTAAGAAA+AGG + chr8_4:50610110-50610129 None:intergenic 25.0%
!!! TTTCCTAAAAGCCATTTTTA+GGG + chr8_4:50610296-50610315 None:intergenic 25.0%
!!! TTTTCCTAAAAGCCATTTTT+AGG + chr8_4:50610297-50610316 None:intergenic 25.0%
! TAACAATGATTCCAATTAAG+TGG - chr8_4:50610318-50610337 Msa1331170:intron 25.0%
! TCTAATAAAGTCCACTTAAT+TGG + chr8_4:50610332-50610351 None:intergenic 25.0%
!! AGTGGACTTTATTAGATTTA+TGG - chr8_4:50610336-50610355 Msa1331170:intron 25.0%
! CAAATAAAATCAGGTAATGA+TGG + chr8_4:50610471-50610490 None:intergenic 25.0%
! GATTATGAGCAAATAAAATC+AGG + chr8_4:50610480-50610499 None:intergenic 25.0%
! TGAATTTACCTCTAACAAAA+AGG + chr8_4:50610590-50610609 None:intergenic 25.0%
! TTGTTAGAGGTAAATTCATA+CGG - chr8_4:50610592-50610611 Msa1331170:intron 25.0%
! CAAAATAATAGCTTCATTGA+TGG - chr8_4:50610826-50610845 Msa1331170:intron 25.0%
! TTCTTTATAAACATGATCAG+AGG - chr8_4:50610946-50610965 Msa1331170:intron 25.0%
! TCTTTATAAACATGATCAGA+GGG - chr8_4:50610947-50610966 Msa1331170:intron 25.0%
!! GAAAAATGTGAATCAGTTTT+TGG + chr8_4:50611105-50611124 None:intergenic 25.0%
! TGAAGTTAAGAAATTTGGTT+GGG + chr8_4:50611375-50611394 None:intergenic 25.0%
! TTGAAGTTAAGAAATTTGGT+TGG + chr8_4:50611376-50611395 None:intergenic 25.0%
!!! ATACTATTTTGAAGTTGTGT+TGG - chr8_4:50611648-50611667 Msa1331170:intron 25.0%
!!! AAACAGTTTTTTAATCCTCA+TGG + chr8_4:50611815-50611834 None:intergenic 25.0%
! GAATTTCGAGAAAAGAAAAT+GGG + chr8_4:50612194-50612213 None:intergenic 25.0%
! AGAATTTCGAGAAAAGAAAA+TGG + chr8_4:50612195-50612214 None:intergenic 25.0%
! AATGCTAACAAAAACCAATT+TGG + chr8_4:50612247-50612266 None:intergenic 25.0%
! TAATACATGGTTTCATAATG+TGG + chr8_4:50612524-50612543 None:intergenic 25.0%
! TAAGGAAAGAATGAATGTAA+CGG + chr8_4:50612693-50612712 None:intergenic 25.0%
!!! TGATGCATATTATTTTGTTG+GGG + chr8_4:50612858-50612877 None:intergenic 25.0%
! AGTTTACTAATTTACAGCAA+TGG + chr8_4:50612952-50612971 None:intergenic 25.0%
! TTTATTAGCTATCACAATGA+GGG + chr8_4:50613080-50613099 None:intergenic 25.0%
!! TTTTATTAGCTATCACAATG+AGG + chr8_4:50613081-50613100 None:intergenic 25.0%
!!! AATCTTGAAAAGTATCTCAT+AGG + chr8_4:50613110-50613129 None:intergenic 25.0%
AACTCAACAGAGAAAGTTAA+AGG - chr8_4:50604248-50604267 Msa1331170:three_prime_UTR 30.0%
ACTCAACAGAGAAAGTTAAA+GGG - chr8_4:50604249-50604268 Msa1331170:three_prime_UTR 30.0%
AGTGATTATAAGAAAAAGCG+CGG - chr8_4:50604342-50604361 Msa1331170:three_prime_UTR 30.0%
!! TCTCTTATTAGGTTGAAGAT+CGG + chr8_4:50604974-50604993 None:intergenic 30.0%
GAAACCGTAATTCTCTTATT+AGG + chr8_4:50604985-50605004 None:intergenic 30.0%
! TGAATCTCAATTTTCTTCTC+TGG + chr8_4:50605153-50605172 None:intergenic 30.0%
!!! TTTTCTGAAACTTTTCTGTG+CGG - chr8_4:50605308-50605327 Msa1331170:three_prime_UTR 30.0%
TGTATTTAATCACAGGATCT+GGG - chr8_4:50605647-50605666 Msa1331170:three_prime_UTR 30.0%
CAGTCCATAAATAAAAAGCA+TGG + chr8_4:50605673-50605692 None:intergenic 30.0%
CCATTTGATGTTAAATCCTT+CGG + chr8_4:50605750-50605769 None:intergenic 30.0%
AACTACAAGTCCATCAAAAT+GGG + chr8_4:50605839-50605858 None:intergenic 30.0%
! TTGATTTGACATTTCACATC+AGG - chr8_4:50605857-50605876 Msa1331170:CDS 30.0%
! ATTTTGCAAACGAAAAGAAC+AGG + chr8_4:50605926-50605945 None:intergenic 30.0%
TATTGAATGAACCTAGAAAG+TGG - chr8_4:50606074-50606093 Msa1331170:CDS 30.0%
TAAGGAAATCTCACAGTATA+GGG + chr8_4:50606432-50606451 None:intergenic 30.0%
TTAAGGAAATCTCACAGTAT+AGG + chr8_4:50606433-50606452 None:intergenic 30.0%
AATGAGGAGAATGAAAAAAG+TGG + chr8_4:50606650-50606669 None:intergenic 30.0%
GTTATAACAAACATGAGTTG+AGG - chr8_4:50606800-50606819 Msa1331170:CDS 30.0%
TGACATGTAAGTGCATTAAA+TGG + chr8_4:50607243-50607262 None:intergenic 30.0%
TAATAATCAAAGGGTTCCAA+AGG - chr8_4:50607665-50607684 Msa1331170:intron 30.0%
GATTTGTGCTCAAATTCTAT+GGG + chr8_4:50608011-50608030 None:intergenic 30.0%
! TGATTTGTGCTCAAATTCTA+TGG + chr8_4:50608012-50608031 None:intergenic 30.0%
!! TCATTTGGTTTGCTATTATC+CGG + chr8_4:50608200-50608219 None:intergenic 30.0%
ATGATTTCATATAACGTGCA+TGG - chr8_4:50608346-50608365 Msa1331170:intron 30.0%
!!! ACGGTTTTTTGGGTATTATT+AGG + chr8_4:50608460-50608479 None:intergenic 30.0%
!!! AGTAAAAGCTACGGTTTTTT+GGG + chr8_4:50608470-50608489 None:intergenic 30.0%
!!! TAGTAAAAGCTACGGTTTTT+TGG + chr8_4:50608471-50608490 None:intergenic 30.0%
!!! TTAGTTTTTTCTTTCGCCAA+TGG - chr8_4:50608524-50608543 Msa1331170:intron 30.0%
GGATGAAAGTCATCTTAATT+CGG - chr8_4:50608751-50608770 Msa1331170:intron 30.0%
CAATTGTATAGTATTTGCGA+CGG - chr8_4:50608998-50609017 Msa1331170:intron 30.0%
TTTCACAGCACTTTATTATG+TGG - chr8_4:50609029-50609048 Msa1331170:intron 30.0%
! TCGTTTTCTAACAATCATCA+TGG - chr8_4:50609105-50609124 Msa1331170:intron 30.0%
!! GGAATAGTTTCCTTTTAAGA+TGG - chr8_4:50609201-50609220 Msa1331170:intron 30.0%
TCATCATTTCCATAAAACTC+TGG + chr8_4:50609297-50609316 None:intergenic 30.0%
TAATATCTCCTTGTTGAGAA+AGG - chr8_4:50609412-50609431 Msa1331170:intron 30.0%
TTAGTCAGATCAATGAAAAG+GGG + chr8_4:50609728-50609747 None:intergenic 30.0%
GTTAGTCAGATCAATGAAAA+GGG + chr8_4:50609729-50609748 None:intergenic 30.0%
AGTTAGTCAGATCAATGAAA+AGG + chr8_4:50609730-50609749 None:intergenic 30.0%
! ACTAACTAGTGTTTTGTAAG+TGG - chr8_4:50609743-50609762 Msa1331170:CDS 30.0%
TTTGAGTATATAACTCGTTG+TGG + chr8_4:50609804-50609823 None:intergenic 30.0%
ACAACGAGTTATATACTCAA+AGG - chr8_4:50609803-50609822 Msa1331170:CDS 30.0%
CAACGAGTTATATACTCAAA+GGG - chr8_4:50609804-50609823 Msa1331170:CDS 30.0%
! TTGTTCGAAAAGATTTTACG+AGG - chr8_4:50609850-50609869 Msa1331170:CDS 30.0%
GATTATTTACAGGAGAACTA+AGG - chr8_4:50609896-50609915 Msa1331170:intron 30.0%
GAAGAAGCAAAATTAATGAC+AGG - chr8_4:50609995-50610014 Msa1331170:intron 30.0%
!! GTTAGTCTTACCTACTAATA+TGG - chr8_4:50610017-50610036 Msa1331170:intron 30.0%
! AAAAAGGTGTACCCTAAAAA+TGG - chr8_4:50610282-50610301 Msa1331170:intron 30.0%
!!! CATTCACTTTTTACAAGAGA+AGG - chr8_4:50610694-50610713 Msa1331170:intron 30.0%
AATCTTTCACAGCTTAAGAT+AGG + chr8_4:50610798-50610817 None:intergenic 30.0%
TTTCTCATAAAATGATCTGG+AGG + chr8_4:50610869-50610888 None:intergenic 30.0%
ACGTTTCTCATAAAATGATC+TGG + chr8_4:50610872-50610891 None:intergenic 30.0%
CAATCAAAACTATTAGGTCT+AGG + chr8_4:50610913-50610932 None:intergenic 30.0%
!!! ACCTAATAGTTTTGATTGTC+TGG - chr8_4:50610915-50610934 Msa1331170:intron 30.0%
ACCAGACAATCAAAACTATT+AGG + chr8_4:50610919-50610938 None:intergenic 30.0%
ATCACATAGCCTATTGTTAA+TGG - chr8_4:50611054-50611073 Msa1331170:intron 30.0%
!! AATGTGAATCAGTTTTTGGA+TGG + chr8_4:50611101-50611120 None:intergenic 30.0%
AAATTTGGTTGGGAAGAAAT+AGG + chr8_4:50611365-50611384 None:intergenic 30.0%
! TGGGTTGAAGTTAAGAAATT+TGG + chr8_4:50611380-50611399 None:intergenic 30.0%
TTCTTAACTTCAACCCAAAT+CGG - chr8_4:50611383-50611402 Msa1331170:intron 30.0%
!! TTCTACTGAAGGTTGATAAT+TGG + chr8_4:50611468-50611487 None:intergenic 30.0%
ATTGAATTGTTAGATGACTG+TGG + chr8_4:50611757-50611776 None:intergenic 30.0%
TGAATTGTTTGAATGGAACA+GGG + chr8_4:50612049-50612068 None:intergenic 30.0%
ATGAATTGTTTGAATGGAAC+AGG + chr8_4:50612050-50612069 None:intergenic 30.0%
TTGTAATTAGGATGCCAAAT+TGG - chr8_4:50612230-50612249 Msa1331170:five_prime_UTR 30.0%
CAAAGTAAATGTGCTATACT+TGG - chr8_4:50612284-50612303 Msa1331170:five_prime_UTR 30.0%
CAATTTGAGCAAATATACCT+TGG + chr8_4:50612445-50612464 None:intergenic 30.0%
! AAGATCCTTCTAAGAATCAA+AGG - chr8_4:50612581-50612600 Msa1331170:five_prime_UTR 30.0%
ATCTTCCTTTGATTCTTAGA+AGG + chr8_4:50612589-50612608 None:intergenic 30.0%
!! ATGTAGTGTCTTAGTTTGTT+GGG - chr8_4:50612819-50612838 Msa1331170:intron 30.0%
!! ATGCATATTATTTTGTTGGG+GGG + chr8_4:50612856-50612875 None:intergenic 30.0%
!! GATGCATATTATTTTGTTGG+GGG + chr8_4:50612857-50612876 None:intergenic 30.0%
AAAACAGCTTGTATCAGTAT+GGG + chr8_4:50612916-50612935 None:intergenic 30.0%
AAAAACAGCTTGTATCAGTA+TGG + chr8_4:50612917-50612936 None:intergenic 30.0%
GCTGTAAATTAGTAAACTCT+TGG - chr8_4:50612954-50612973 Msa1331170:five_prime_UTR 30.0%
AGGCTATAAATAATGAGCTA+CGG + chr8_4:50613053-50613072 None:intergenic 30.0%
GAATTAATAGAAGCAATCCA+AGG + chr8_4:50613149-50613168 None:intergenic 30.0%
!! GATTCTGTGAAATTTCTAGC+AGG - chr8_4:50604740-50604759 Msa1331170:three_prime_UTR 35.0%
! TTAGCAATTGACTTCCACAA+AGG + chr8_4:50604814-50604833 None:intergenic 35.0%
AATCGCAAATCAAGAGCTTA+AGG + chr8_4:50604894-50604913 None:intergenic 35.0%
!! AAGCTCTTGATTTGCGATTA+AGG - chr8_4:50604895-50604914 Msa1331170:intron 35.0%
TTCTCTGGTACGTAATTCAA+CGG + chr8_4:50605138-50605157 None:intergenic 35.0%
CAGATCCTGTGATTAAATAC+AGG + chr8_4:50605648-50605667 None:intergenic 35.0%
CTGTATTTAATCACAGGATC+TGG - chr8_4:50605646-50605665 Msa1331170:three_prime_UTR 35.0%
!! TGGGCCATGCTTTTTATTTA+TGG - chr8_4:50605666-50605685 Msa1331170:three_prime_UTR 35.0%
CCGAAGGATTTAACATCAAA+TGG - chr8_4:50605747-50605766 Msa1331170:exon 35.0%
CAACTACAAGTCCATCAAAA+TGG + chr8_4:50605840-50605859 None:intergenic 35.0%
! GAGGGTGTAAAATCTTAATC+TGG + chr8_4:50605967-50605986 None:intergenic 35.0%
TGCTTATATTAGTGACTGGA+GGG + chr8_4:50605985-50606004 None:intergenic 35.0%
TTGCTTATATTAGTGACTGG+AGG + chr8_4:50605986-50606005 None:intergenic 35.0%
TTGTTTATATTAGTGACCGG+AGG - chr8_4:50606101-50606120 Msa1331170:CDS 35.0%
TGTTTATATTAGTGACCGGA+GGG - chr8_4:50606102-50606121 Msa1331170:CDS 35.0%
TCATTCTCTTATATACCCTC+CGG + chr8_4:50606120-50606139 None:intergenic 35.0%
TGGGCTAAAAACCAGTATAA+TGG - chr8_4:50606482-50606501 Msa1331170:intron 35.0%
TATTCACGCAGGAATTAATG+TGG + chr8_4:50607644-50607663 None:intergenic 35.0%
! GAAGAGTCTGAGATTAGAAA+GGG - chr8_4:50607792-50607811 Msa1331170:intron 35.0%
ACAGGAAAGGAGAATAATGT+TGG - chr8_4:50607819-50607838 Msa1331170:intron 35.0%
CAGGAAAGGAGAATAATGTT+GGG - chr8_4:50607820-50607839 Msa1331170:intron 35.0%
AGGAAAGGAGAATAATGTTG+GGG - chr8_4:50607821-50607840 Msa1331170:intron 35.0%
TCATGGTTACCTCCTATAAT+GGG + chr8_4:50607852-50607871 None:intergenic 35.0%
TTCATGGTTACCTCCTATAA+TGG + chr8_4:50607853-50607872 None:intergenic 35.0%
AAAGTGTAGGCTGTTGTAAT+GGG + chr8_4:50607975-50607994 None:intergenic 35.0%
TAAAGTGTAGGCTGTTGTAA+TGG + chr8_4:50607976-50607995 None:intergenic 35.0%
TCCTTGAAAAACATAAGGAC+CGG - chr8_4:50608178-50608197 Msa1331170:intron 35.0%
! AAAACCGTAGCTTTTACTAC+TGG - chr8_4:50608472-50608491 Msa1331170:intron 35.0%
CATTCCAGTAGTAAAAGCTA+CGG + chr8_4:50608479-50608498 None:intergenic 35.0%
TTTCATGAATCGATTATGCG+AGG + chr8_4:50608555-50608574 None:intergenic 35.0%
ATTAAGATGACTTTCATCCG+TGG + chr8_4:50608750-50608769 None:intergenic 35.0%
AGAACGTCCGAGAAAATAAT+TGG + chr8_4:50608853-50608872 None:intergenic 35.0%
ACACATGAATGACACTAGAT+AGG - chr8_4:50608877-50608896 Msa1331170:intron 35.0%
CACATGAATGACACTAGATA+GGG - chr8_4:50608878-50608897 Msa1331170:intron 35.0%
! ACAGAAGAACCAGAGTTTTA+TGG - chr8_4:50609285-50609304 Msa1331170:intron 35.0%
!!! ATTTTCTAGCTCTTCATCCT+GGG + chr8_4:50609338-50609357 None:intergenic 35.0%
GATGAAGAGCTAGAAAATGA+AGG - chr8_4:50609340-50609359 Msa1331170:intron 35.0%
ATTACCTCTTTGAACATTCG+AGG + chr8_4:50609389-50609408 None:intergenic 35.0%
!!! TGTTTTGATCTTGGTGTGTT+TGG + chr8_4:50609955-50609974 None:intergenic 35.0%
!!! GTTGCAGAATGTTTTGATCT+TGG + chr8_4:50609964-50609983 None:intergenic 35.0%
CAACTAACTCGTTAAGCATT+AGG + chr8_4:50610213-50610232 None:intergenic 35.0%
! GTACCCTAAAAATGGCTTTT+AGG - chr8_4:50610290-50610309 Msa1331170:intron 35.0%
!! CAAAGCATCCTTTTTGTTAG+AGG - chr8_4:50610579-50610598 Msa1331170:intron 35.0%
TAGAGGTAAATTCATACGGT+TGG - chr8_4:50610596-50610615 Msa1331170:intron 35.0%
GAGAAGGTTCATAAGTATGA+AGG - chr8_4:50610710-50610729 Msa1331170:intron 35.0%
AAGTATGAAGGTTCATTCCA+AGG - chr8_4:50610722-50610741 Msa1331170:intron 35.0%
! TTCAAGTTTGATGTCCTTGT+TGG - chr8_4:50610977-50610996 Msa1331170:intron 35.0%
!! AGATGCTTGTCTTGTTTAAG+TGG - chr8_4:50611017-50611036 Msa1331170:intron 35.0%
!! GATGCTTGTCTTGTTTAAGT+GGG - chr8_4:50611018-50611037 Msa1331170:intron 35.0%
CAAAGCAGAGAAATAATGAC+AGG - chr8_4:50611129-50611148 Msa1331170:intron 35.0%
! TTTGAAGCAAACAGCAATGT+TGG + chr8_4:50611206-50611225 None:intergenic 35.0%
!! AACATTGCTGTTTGCTTCAA+AGG - chr8_4:50611205-50611224 Msa1331170:intron 35.0%
GGTATCCATAATGTAGAATC+TGG - chr8_4:50611269-50611288 Msa1331170:intron 35.0%
TCAAGCCAGATTCTACATTA+TGG + chr8_4:50611277-50611296 None:intergenic 35.0%
! ATAGTCTGAGATTCTACTGA+AGG + chr8_4:50611479-50611498 None:intergenic 35.0%
! TTTCTCTTTCAGCTTTTCAC+TGG + chr8_4:50611510-50611529 None:intergenic 35.0%
GTACACACTTGATATGCTAA+TGG + chr8_4:50611555-50611574 None:intergenic 35.0%
ATATCAAGTGTGTACTCACA+AGG - chr8_4:50611560-50611579 Msa1331170:intron 35.0%
TATCAAGTGTGTACTCACAA+GGG - chr8_4:50611561-50611580 Msa1331170:intron 35.0%
AAGTTGTGTTGGACATGATA+TGG - chr8_4:50611659-50611678 Msa1331170:intron 35.0%
GAGCATTTGTGGATAGAAAT+TGG - chr8_4:50611696-50611715 Msa1331170:intron 35.0%
AATTGTTAGATGACTGTGGA+TGG + chr8_4:50611753-50611772 None:intergenic 35.0%
!!! GTTTTTTAATCCTCATGGCT+GGG + chr8_4:50611810-50611829 None:intergenic 35.0%
!!! AGTTTTTTAATCCTCATGGC+TGG + chr8_4:50611811-50611830 None:intergenic 35.0%
AGTGAAGTAAGTCCAAGTTT+AGG + chr8_4:50611867-50611886 None:intergenic 35.0%
!! CTAGGTTGATCCATATATTG+TGG + chr8_4:50612103-50612122 None:intergenic 35.0%
! AAGTTTTCCAACAACATGCT+AGG + chr8_4:50612121-50612140 None:intergenic 35.0%
TAAATGTGCTATACTTGGAC+AGG - chr8_4:50612289-50612308 Msa1331170:five_prime_UTR 35.0%
TTTATCACAGGCTAGCATTT+CGG - chr8_4:50612356-50612375 Msa1331170:five_prime_UTR 35.0%
! ATTTCGGTGCAAATTGAACT+TGG - chr8_4:50612372-50612391 Msa1331170:five_prime_UTR 35.0%
TATACCTTGGAAACACACAT+TGG + chr8_4:50612432-50612451 None:intergenic 35.0%
!! CATGTAGTGTCTTAGTTTGT+TGG - chr8_4:50612818-50612837 Msa1331170:intron 35.0%
TAAATAATGAGCTACGGAAG+AGG + chr8_4:50613047-50613066 None:intergenic 35.0%
TTGTTTACTTGACCTTTCCT+TGG - chr8_4:50613129-50613148 Msa1331170:five_prime_UTR 35.0%
AATAGAAGCAATCCAAGGAA+AGG + chr8_4:50613144-50613163 None:intergenic 35.0%
! CGCTCTGTGATTGAAGATTT+TGG - chr8_4:50604764-50604783 Msa1331170:intron 40.0%
TGATTATCGAACGACCTTTG+TGG - chr8_4:50604797-50604816 Msa1331170:intron 40.0%
! AAACTTTTCTGTGCGGAAAC+AGG - chr8_4:50605315-50605334 Msa1331170:three_prime_UTR 40.0%
TATACAGTACCTTGAGCAGA+TGG + chr8_4:50605411-50605430 None:intergenic 40.0%
GAAAAACATGGCAACAACAG+AGG + chr8_4:50605496-50605515 None:intergenic 40.0%
! CATGTTTTTCTCTGTGACGT+GGG - chr8_4:50605506-50605525 Msa1331170:three_prime_UTR 40.0%
! ATGTTTTTCTCTGTGACGTG+GGG - chr8_4:50605507-50605526 Msa1331170:three_prime_UTR 40.0%
ATTAAATACAGGTCACGTGC+AGG + chr8_4:50605637-50605656 None:intergenic 40.0%
CGTGACCTGTATTTAATCAC+AGG - chr8_4:50605640-50605659 Msa1331170:three_prime_UTR 40.0%
ATTTCACATCAGGCTCGATA+AGG - chr8_4:50605867-50605886 Msa1331170:CDS 40.0%
ATGTATGACATGCAGGTCAA+GGG + chr8_4:50607417-50607436 None:intergenic 40.0%
AATGTATGACATGCAGGTCA+AGG + chr8_4:50607418-50607437 None:intergenic 40.0%
GAAGGAAATGTATGACATGC+AGG + chr8_4:50607424-50607443 None:intergenic 40.0%
TGCTGTTCATGCATGAAAGA+AGG + chr8_4:50607442-50607461 None:intergenic 40.0%
TCAAGACCCATGATTTCTTG+CGG - chr8_4:50607469-50607488 Msa1331170:intron 40.0%
AGCCACAGATGAAATCTCAT+CGG - chr8_4:50607533-50607552 Msa1331170:intron 40.0%
!! ATGAAGCTGGTGTTGCTAAA+GGG + chr8_4:50607575-50607594 None:intergenic 40.0%
TTCAAGCGGTTTCACATTGT+GGG - chr8_4:50607770-50607789 Msa1331170:intron 40.0%
! GGAAGAGTCTGAGATTAGAA+AGG - chr8_4:50607791-50607810 Msa1331170:intron 40.0%
GAGATTAGAAAGGGAAAGAC+AGG - chr8_4:50607801-50607820 Msa1331170:intron 40.0%
TAGAAAGGGAAAGACAGGAA+AGG - chr8_4:50607806-50607825 Msa1331170:intron 40.0%
AAGTGTTAGTATCTTGGGGT+TGG + chr8_4:50608075-50608094 None:intergenic 40.0%
! TCCGGTCCTTATGTTTTTCA+AGG + chr8_4:50608182-50608201 None:intergenic 40.0%
! CGTAGCTTTTACTACTGGAA+TGG - chr8_4:50608477-50608496 Msa1331170:intron 40.0%
ATTATGCGAGGCAAAACCAT+TGG + chr8_4:50608543-50608562 None:intergenic 40.0%
! TATGCCTTTTGTCTACACCA+CGG - chr8_4:50608730-50608749 Msa1331170:intron 40.0%
GGAAATGATGAAATCTGCAC+AGG - chr8_4:50609306-50609325 Msa1331170:intron 40.0%
!!! CATTTTCTAGCTCTTCATCC+TGG + chr8_4:50609339-50609358 None:intergenic 40.0%
GAATCCTCGAATGTTCAAAG+AGG - chr8_4:50609382-50609401 Msa1331170:intron 40.0%
!!! TGGTGTGTTTGGCTTTTGAT+CGG + chr8_4:50609944-50609963 None:intergenic 40.0%
AGAGAAGAATTCCGTGCTAT+TGG - chr8_4:50610160-50610179 Msa1331170:intron 40.0%
! GAGAAGAATTCCGTGCTATT+GGG - chr8_4:50610161-50610180 Msa1331170:intron 40.0%
! AGTAAAAGTGTGGCTGAACA+AGG + chr8_4:50610374-50610393 None:intergenic 40.0%
! TTGTTCAGCCACACTTTTAC+TGG - chr8_4:50610373-50610392 Msa1331170:intron 40.0%
! TGTTCAGCCACACTTTTACT+GGG - chr8_4:50610374-50610393 Msa1331170:intron 40.0%
TTCCACACAGTGATCAAAAG+AGG - chr8_4:50610554-50610573 Msa1331170:intron 40.0%
TCCACACAGTGATCAAAAGA+GGG - chr8_4:50610555-50610574 Msa1331170:intron 40.0%
ATGAAGGTTCATTCCAAGGT+TGG - chr8_4:50610726-50610745 Msa1331170:intron 40.0%
! GAAAGTGTGGTATTTACCCA+TGG + chr8_4:50610776-50610795 None:intergenic 40.0%
CAGCTTAAGATAGGAAAGTG+TGG + chr8_4:50610789-50610808 None:intergenic 40.0%
TTGCTCAGTCAATTCCAACA+AGG + chr8_4:50610994-50611013 None:intergenic 40.0%
CGAGATTGAAAACTTTCTGC+TGG + chr8_4:50611155-50611174 None:intergenic 40.0%
! GCAGAAAGTTTTCAATCTCG+TGG - chr8_4:50611155-50611174 Msa1331170:intron 40.0%
CGGATGATCTATTGTCTTCA+TGG + chr8_4:50611312-50611331 None:intergenic 40.0%
AAGACAATAGATCATCCGTC+TGG - chr8_4:50611314-50611333 Msa1331170:intron 40.0%
! TCCGTCTGGAATAACAAACA+AGG - chr8_4:50611328-50611347 Msa1331170:intron 40.0%
!! GCCTTGTTTGTTATTCCAGA+CGG + chr8_4:50611332-50611351 None:intergenic 40.0%
TTAACTTCAACCCAAATCGG+AGG - chr8_4:50611386-50611405 Msa1331170:intron 40.0%
TATCCACAAATGCTCACTAG+GGG + chr8_4:50611691-50611710 None:intergenic 40.0%
CTATCCACAAATGCTCACTA+GGG + chr8_4:50611692-50611711 None:intergenic 40.0%
TCTATCCACAAATGCTCACT+AGG + chr8_4:50611693-50611712 None:intergenic 40.0%
GTGGATAGAAATTGGAGATG+TGG - chr8_4:50611704-50611723 Msa1331170:intron 40.0%
ATAGAAATTGGAGATGTGGC+AGG - chr8_4:50611708-50611727 Msa1331170:intron 40.0%
TATATATTCACCCAGCCATG+AGG - chr8_4:50611797-50611816 Msa1331170:intron 40.0%
TTCTGTTTGCAGCCTAAACT+TGG - chr8_4:50611852-50611871 Msa1331170:intron 40.0%
GTGGACATCTATTCAGAGAA+AGG + chr8_4:50611891-50611910 None:intergenic 40.0%
AGCAACATGAATTGCACAAG+TGG + chr8_4:50611910-50611929 None:intergenic 40.0%
! TTCAGGAGTGGATTTATCAC+AGG - chr8_4:50612344-50612363 Msa1331170:five_prime_UTR 40.0%
!! CACATTGGCATTGGTATGTT+TGG + chr8_4:50612417-50612436 None:intergenic 40.0%
TTGGAAACACACATTGGCAT+TGG + chr8_4:50612426-50612445 None:intergenic 40.0%
AATGCCAATGTGTGTTTCCA+AGG - chr8_4:50612425-50612444 Msa1331170:five_prime_UTR 40.0%
! TTTGTCGATCATTTTCCCCT+AGG - chr8_4:50612552-50612571 Msa1331170:five_prime_UTR 40.0%
AAGGATCTTCATCATCCTAG+GGG + chr8_4:50612570-50612589 None:intergenic 40.0%
GAAGGATCTTCATCATCCTA+GGG + chr8_4:50612571-50612590 None:intergenic 40.0%
AGAAGGATCTTCATCATCCT+AGG + chr8_4:50612572-50612591 None:intergenic 40.0%
TGCTGGATTATTATCCTGCA+TGG - chr8_4:50612780-50612799 Msa1331170:intron 40.0%
!! CTTAGTTTGTTGGGATCCTT+AGG - chr8_4:50612828-50612847 Msa1331170:intron 40.0%
CGCACTCTTAACTCGTTGTT+TGG - chr8_4:50604530-50604549 Msa1331170:three_prime_UTR 45.0%
CTTCCTCAAGCACGTTCTTA+TGG - chr8_4:50605186-50605205 Msa1331170:three_prime_UTR 45.0%
! AGATGGCCTTGGATCTTGTT+CGG + chr8_4:50605394-50605413 None:intergenic 45.0%
CCACGTCACAGAGAAAAACA+TGG + chr8_4:50605508-50605527 None:intergenic 45.0%
! CCATGTTTTTCTCTGTGACG+TGG - chr8_4:50605505-50605524 Msa1331170:three_prime_UTR 45.0%
!! TTTCCTATGGTGGATTCCGA+AGG - chr8_4:50605731-50605750 Msa1331170:three_prime_UTR 45.0%
AATCCTTCGGAATCCACCAT+AGG + chr8_4:50605737-50605756 None:intergenic 45.0%
ATGCTGCACACTTTATCGGA+CGG + chr8_4:50605801-50605820 None:intergenic 45.0%
CCTCATGCTGCACACTTTAT+CGG + chr8_4:50605805-50605824 None:intergenic 45.0%
TAAAGTGTGCAGCATGAGGA+TGG - chr8_4:50605806-50605825 Msa1331170:CDS 45.0%
ACATCAGGCTCGATAAGGAT+TGG - chr8_4:50605872-50605891 Msa1331170:CDS 45.0%
TAAACTACACCACACGCACA+CGG + chr8_4:50605903-50605922 None:intergenic 45.0%
TAGTTGCACGCAGAGTTACT+CGG + chr8_4:50606199-50606218 None:intergenic 45.0%
AGTAACTCTGCGTGCAACTA+TGG - chr8_4:50606199-50606218 Msa1331170:intron 45.0%
AAGTGCATTAAATGGTGCGC+AGG + chr8_4:50607235-50607254 None:intergenic 45.0%
GCAAGAAATCATGGGTCTTG+AGG + chr8_4:50607470-50607489 None:intergenic 45.0%
TAGTGGCCGCAAGAAATCAT+GGG + chr8_4:50607478-50607497 None:intergenic 45.0%
! TTCTTCCTTGGCACTGGATT+TGG + chr8_4:50607514-50607533 None:intergenic 45.0%
TTCATCTGTGGCTTCTTCCT+TGG + chr8_4:50607526-50607545 None:intergenic 45.0%
CACCGATGAGATTTCATCTG+TGG + chr8_4:50607538-50607557 None:intergenic 45.0%
CACAGATGAAATCTCATCGG+TGG - chr8_4:50607536-50607555 Msa1331170:intron 45.0%
!! TGAAGCTGGTGTTGCTAAAG+GGG + chr8_4:50607574-50607593 None:intergenic 45.0%
!! GATGAAGCTGGTGTTGCTAA+AGG + chr8_4:50607576-50607595 None:intergenic 45.0%
ACCTCTTACCTGGAGGAATT+GGG - chr8_4:50607604-50607623 Msa1331170:intron 45.0%
CTATAAGTCCCAATTCCTCC+AGG + chr8_4:50607615-50607634 None:intergenic 45.0%
! AGTGATGATGCTTCTGCCTT+TGG + chr8_4:50607684-50607703 None:intergenic 45.0%
TGTGCATCAAGCAACTAGTG+CGG - chr8_4:50607710-50607729 Msa1331170:intron 45.0%
TGAAGTATGTGAGCTGCAGT+TGG + chr8_4:50607754-50607773 None:intergenic 45.0%
TGCAGCTCACATACTTCAAG+CGG - chr8_4:50607756-50607775 Msa1331170:intron 45.0%
CTTCAAGCGGTTTCACATTG+TGG - chr8_4:50607769-50607788 Msa1331170:intron 45.0%
GTTGGGGACAAACCCATTAT+AGG - chr8_4:50607837-50607856 Msa1331170:intron 45.0%
TCATCCGTGGTGTAGACAAA+AGG + chr8_4:50608737-50608756 None:intergenic 45.0%
GAATGACACTAGATAGGGTG+TGG - chr8_4:50608883-50608902 Msa1331170:intron 45.0%
! TTGAAGCTGACTTCCTAGAC+AGG + chr8_4:50608916-50608935 None:intergenic 45.0%
GCAGATTCTGCTGCTAAGTT+AGG - chr8_4:50609051-50609070 Msa1331170:intron 45.0%
GTTAGGTCAGTGGACATTGA+AGG - chr8_4:50609068-50609087 Msa1331170:intron 45.0%
TGCTACTGCCTTTCTCAACA+AGG + chr8_4:50609423-50609442 None:intergenic 45.0%
! AATTCCGTGCTATTGGGACT+TGG - chr8_4:50610167-50610186 Msa1331170:intron 45.0%
! ATTCCGTGCTATTGGGACTT+GGG - chr8_4:50610168-50610187 Msa1331170:intron 45.0%
TTGGGAGTAGTGTAACTGGA+AGG - chr8_4:50610186-50610205 Msa1331170:intron 45.0%
! GTTCAGCCACACTTTTACTG+GGG - chr8_4:50610375-50610394 Msa1331170:intron 45.0%
! TCCCTCTTTTGATCACTGTG+TGG + chr8_4:50610559-50610578 None:intergenic 45.0%
AGCCAGAAAAACTGATGCCA+TGG - chr8_4:50610756-50610775 Msa1331170:intron 45.0%
GCCAGAAAAACTGATGCCAT+GGG - chr8_4:50610757-50610776 Msa1331170:intron 45.0%
! ACCCATGGCATCAGTTTTTC+TGG + chr8_4:50610761-50610780 None:intergenic 45.0%
TTTCAATCTCGTGGCGCAAA+TGG - chr8_4:50611164-50611183 Msa1331170:intron 45.0%
GCAAACAGCAATGTTGGAGA+TGG + chr8_4:50611200-50611219 None:intergenic 45.0%
! ATCTGGCTTGAGCACAACAA+CGG - chr8_4:50611286-50611305 Msa1331170:intron 45.0%
GGTTGGGAAGAAATAGGACT+TGG + chr8_4:50611359-50611378 None:intergenic 45.0%
TCAACCCAAATCGGAGGTTT+AGG - chr8_4:50611392-50611411 Msa1331170:intron 45.0%
TCCACCTAAACCTCCGATTT+GGG + chr8_4:50611399-50611418 None:intergenic 45.0%
GAGAAAGAGCTCACCATTGA+AGG - chr8_4:50611524-50611543 Msa1331170:intron 45.0%
AAAGAGCTCACCATTGAAGG+AGG - chr8_4:50611527-50611546 Msa1331170:intron 45.0%
GGATCAACCTAGCATGTTGT+TGG - chr8_4:50612111-50612130 Msa1331170:intron 45.0%
GCTATACTTGGACAGGTTGT+TGG - chr8_4:50612296-50612315 Msa1331170:five_prime_UTR 45.0%
! GCATTGGTATGTTTGGTCTG+AGG + chr8_4:50612410-50612429 None:intergenic 45.0%
AATCAAAGGAAGATGCGCTC+TGG - chr8_4:50612595-50612614 Msa1331170:intron 45.0%
! GGGGTATTTATTTCCTGTGC+TGG - chr8_4:50612763-50612782 Msa1331170:intron 45.0%
GCAGGATAATAATCCAGCAC+AGG + chr8_4:50612779-50612798 None:intergenic 45.0%
ACAGTCAATCTCATCCATGC+AGG + chr8_4:50612797-50612816 None:intergenic 45.0%
ACAGCTTGTATCAGTATGGG+AGG + chr8_4:50612913-50612932 None:intergenic 45.0%
!!! ATAATTTGTTTTATAATTTT+TGG - chr8_4:50605428-50605447 Msa1331170:three_prime_UTR 5.0%
!! TAATATTCTATAAATAAATA+TGG - chr8_4:50606694-50606713 Msa1331170:intron 5.0%
!! ATAATACTAAAAAATAAATT+TGG + chr8_4:50609677-50609696 None:intergenic 5.0%
!! ATAATTGATAAAAATTATTA+AGG + chr8_4:50612711-50612730 None:intergenic 5.0%
!!! AATAATTTTTATCAATTATT+TGG - chr8_4:50612712-50612731 Msa1331170:intron 5.0%
!!! ATAATTTTTATCAATTATTT+GGG - chr8_4:50612713-50612732 Msa1331170:intron 5.0%
!!! AACTTTTTAAAATTAATTTT+TGG - chr8_4:50612738-50612757 Msa1331170:intron 5.0%
CGAAAGATGAGGTCTTGGGT+CGG + chr8_4:50604276-50604295 None:intergenic 50.0%
GCAGCGAAAGATGAGGTCTT+GGG + chr8_4:50604280-50604299 None:intergenic 50.0%
TGCAGCGAAAGATGAGGTCT+TGG + chr8_4:50604281-50604300 None:intergenic 50.0%
GCTCCATAAGAACGTGCTTG+AGG + chr8_4:50605192-50605211 None:intergenic 50.0%
CAACTGCCGAACAAGATCCA+AGG - chr8_4:50605385-50605404 Msa1331170:three_prime_UTR 50.0%
CCGATAAAGTGTGCAGCATG+AGG - chr8_4:50605802-50605821 Msa1331170:CDS 50.0%
TGTGCAGCATGAGGATGGTA+GGG - chr8_4:50605811-50605830 Msa1331170:CDS 50.0%
AAACTACACCACACGCACAC+GGG + chr8_4:50605902-50605921 None:intergenic 50.0%
AACTCTGCGTGCAACTATGG+TGG - chr8_4:50606202-50606221 Msa1331170:intron 50.0%
CTAGTGGCCGCAAGAAATCA+TGG + chr8_4:50607479-50607498 None:intergenic 50.0%
TGATTTCTTGCGGCCACTAG+AGG - chr8_4:50607479-50607498 Msa1331170:intron 50.0%
TTGGCTTCTACCTCCTCTAG+TGG + chr8_4:50607495-50607514 None:intergenic 50.0%
AGAAGCCAAATCCAGTGCCA+AGG - chr8_4:50607506-50607525 Msa1331170:intron 50.0%
!! GAAGCTGGTGTTGCTAAAGG+GGG + chr8_4:50607573-50607592 None:intergenic 50.0%
AGGTGCTCAACTGATGAAGC+TGG + chr8_4:50607588-50607607 None:intergenic 50.0%
TCAGTTGAGCACCTCTTACC+TGG - chr8_4:50607594-50607613 Msa1331170:intron 50.0%
CACCTCTTACCTGGAGGAAT+TGG - chr8_4:50607603-50607622 Msa1331170:intron 50.0%
TCCCAATTCCTCCAGGTAAG+AGG + chr8_4:50607608-50607627 None:intergenic 50.0%
GGGGACAAACCCATTATAGG+AGG - chr8_4:50607840-50607859 Msa1331170:intron 50.0%
CATGGACACACACACACACA+TGG - chr8_4:50608364-50608383 Msa1331170:intron 50.0%
TGACACTAGATAGGGTGTGG+CGG - chr8_4:50608886-50608905 Msa1331170:intron 50.0%
CTGCTGCTAAGTTAGGTCAG+TGG - chr8_4:50609058-50609077 Msa1331170:intron 50.0%
AGGAGAACTAAGGGTGAGAG+TGG - chr8_4:50609906-50609925 Msa1331170:intron 50.0%
GAACTAAGGGTGAGAGTGGA+CGG - chr8_4:50609910-50609929 Msa1331170:intron 50.0%
GAGACACTTGCAAACTGCGA+TGG - chr8_4:50610066-50610085 Msa1331170:intron 50.0%
ACACTTGCAAACTGCGATGG+AGG - chr8_4:50610069-50610088 Msa1331170:intron 50.0%
ACTCCCAAGTCCCAATAGCA+CGG + chr8_4:50610174-50610193 None:intergenic 50.0%
GGACTTGGGAGTAGTGTAAC+TGG - chr8_4:50610182-50610201 Msa1331170:intron 50.0%
! AGCCACACTTTTACTGGGGT+TGG - chr8_4:50610379-50610398 Msa1331170:intron 50.0%
! GCCACACTTTTACTGGGGTT+GGG - chr8_4:50610380-50610399 Msa1331170:intron 50.0%
TCCCAACCCCAGTAAAAGTG+TGG + chr8_4:50610384-50610403 None:intergenic 50.0%
TTACTGGGGTTGGGATTGTC+TGG - chr8_4:50610389-50610408 Msa1331170:intron 50.0%
! CTGGCTCGTTATTCCAACCT+TGG + chr8_4:50610742-50610761 None:intergenic 50.0%
AATCTCGTGGCGCAAATGGT+GGG - chr8_4:50611168-50611187 Msa1331170:intron 50.0%
ACCATCTCCCCAACAACTCA+TGG - chr8_4:50611245-50611264 Msa1331170:intron 50.0%
CCATCTCCCCAACAACTCAT+GGG - chr8_4:50611246-50611265 Msa1331170:intron 50.0%
CATCTCCCCAACAACTCATG+GGG - chr8_4:50611247-50611266 Msa1331170:intron 50.0%
ATCTCCCCAACAACTCATGG+GGG - chr8_4:50611248-50611267 Msa1331170:intron 50.0%
GATACCCCCATGAGTTGTTG+GGG + chr8_4:50611255-50611274 None:intergenic 50.0%
GGATACCCCCATGAGTTGTT+GGG + chr8_4:50611256-50611275 None:intergenic 50.0%
TGGATACCCCCATGAGTTGT+TGG + chr8_4:50611257-50611276 None:intergenic 50.0%
ACCCAAATCGGAGGTTTAGG+TGG - chr8_4:50611395-50611414 Msa1331170:intron 50.0%
CTCCACCTAAACCTCCGATT+TGG + chr8_4:50611400-50611419 None:intergenic 50.0%
GCTAATGGCACCTCCTTCAA+TGG + chr8_4:50611540-50611559 None:intergenic 50.0%
CATCCCCTAGTGAGCATTTG+TGG - chr8_4:50611685-50611704 Msa1331170:intron 50.0%
ACACATGCCTTGCAGAGTTC+AGG - chr8_4:50612327-50612346 Msa1331170:five_prime_UTR 50.0%
ATCCACTCCTGAACTCTGCA+AGG + chr8_4:50612337-50612356 None:intergenic 50.0%
! ATTTTGTTGGGGGGAGCCTA+AGG + chr8_4:50612847-50612866 None:intergenic 50.0%
! GCTATCACAATGAGGGTGTG+AGG + chr8_4:50613073-50613092 None:intergenic 50.0%
! GAGCACTGCAGCGAAAGATG+AGG + chr8_4:50604287-50604306 None:intergenic 55.0%
GCACGTTCTTATGGAGCCGA+AGG - chr8_4:50605195-50605214 Msa1331170:three_prime_UTR 55.0%
TTCTGTGCGGAAACAGGAGC+AGG - chr8_4:50605321-50605340 Msa1331170:three_prime_UTR 55.0%
TCTGTGCGGAAACAGGAGCA+GGG - chr8_4:50605322-50605341 Msa1331170:three_prime_UTR 55.0%
GATCCAAGGCCATCTGCTCA+AGG - chr8_4:50605399-50605418 Msa1331170:three_prime_UTR 55.0%
GTACCTTGAGCAGATGGCCT+TGG + chr8_4:50605405-50605424 None:intergenic 55.0%
TCTCTGTGACGTGGGGATCA+TGG - chr8_4:50605514-50605533 Msa1331170:three_prime_UTR 55.0%
GTGTGCAGCATGAGGATGGT+AGG - chr8_4:50605810-50605829 Msa1331170:CDS 55.0%
GTGCAGCATGAGGATGGTAG+GGG - chr8_4:50605812-50605831 Msa1331170:CDS 55.0%
TGCAGCATGAGGATGGTAGG+GGG - chr8_4:50605813-50605832 Msa1331170:CDS 55.0%
! TGGTAGGGGGCCCATTTTGA+TGG - chr8_4:50605826-50605845 Msa1331170:CDS 55.0%
TTTCTTGCGGCCACTAGAGG+AGG - chr8_4:50607482-50607501 Msa1331170:intron 55.0%
TGTGGCTTCTTCCTTGGCAC+TGG + chr8_4:50607520-50607539 None:intergenic 55.0%
GTTGAGCACCTCTTACCTGG+AGG - chr8_4:50607597-50607616 Msa1331170:intron 55.0%
!! GTGTGGCGGATTACCTGTCT+AGG - chr8_4:50608900-50608919 Msa1331170:intron 55.0%
ATCTGCACAGGATTGTGCCC+AGG - chr8_4:50609318-50609337 Msa1331170:intron 55.0%
TTGGGATTGTCTGGCGGCTT+TGG - chr8_4:50610398-50610417 Msa1331170:intron 55.0%
CAATCTCGTGGCGCAAATGG+TGG - chr8_4:50611167-50611186 Msa1331170:intron 55.0%
CCCATGAGTTGTTGGGGAGA+TGG + chr8_4:50611249-50611268 None:intergenic 55.0%
GGAGATGTGGCAGGTGATTG+TGG - chr8_4:50611717-50611736 Msa1331170:intron 55.0%
TGCCTTGCAGAGTTCAGGAG+TGG - chr8_4:50612332-50612351 Msa1331170:five_prime_UTR 55.0%
TTGGCATTCCCGTGTGCGTG+TGG - chr8_4:50605891-50605910 Msa1331170:CDS 60.0%
CTGGGGTTGGGATTGTCTGG+CGG - chr8_4:50610392-50610411 Msa1331170:intron 60.0%
!! CGCTCTGGCTCTAGAGTCAC+TGG - chr8_4:50612610-50612629 Msa1331170:intron 60.0%
GTGCGGAAACAGGAGCAGGG+AGG - chr8_4:50605325-50605344 Msa1331170:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 50604174 50613177 50604174 ID=Msa1331170;Name=Msa1331170
chr8_4 mRNA 50604174 50613177 50604174 ID=Msa1331170-mRNA-1;Parent=Msa1331170;Name=Msa1331170-mRNA-1;_AED=0.04;_eAED=0.04;_QI=747|0.90|0.83|1|0.72|0.58|12|1464|488
chr8_4 exon 50604174 50604777 50604174 ID=Msa1331170-mRNA-1:exon:14834;Parent=Msa1331170-mRNA-1
chr8_4 exon 50604905 50606214 50604905 ID=Msa1331170-mRNA-1:exon:14833;Parent=Msa1331170-mRNA-1
chr8_4 exon 50606573 50606668 50606573 ID=Msa1331170-mRNA-1:exon:14832;Parent=Msa1331170-mRNA-1
chr8_4 exon 50606751 50606820 50606751 ID=Msa1331170-mRNA-1:exon:14831;Parent=Msa1331170-mRNA-1
chr8_4 exon 50607335 50607443 50607335 ID=Msa1331170-mRNA-1:exon:14830;Parent=Msa1331170-mRNA-1
chr8_4 exon 50607948 50608075 50607948 ID=Msa1331170-mRNA-1:exon:14829;Parent=Msa1331170-mRNA-1
chr8_4 exon 50608197 50608296 50608197 ID=Msa1331170-mRNA-1:exon:14828;Parent=Msa1331170-mRNA-1
chr8_4 exon 50609490 50609664 50609490 ID=Msa1331170-mRNA-1:exon:14827;Parent=Msa1331170-mRNA-1
chr8_4 exon 50609674 50609891 50609674 ID=Msa1331170-mRNA-1:exon:14826;Parent=Msa1331170-mRNA-1
chr8_4 exon 50611931 50612014 50611931 ID=Msa1331170-mRNA-1:exon:14825;Parent=Msa1331170-mRNA-1
chr8_4 exon 50612135 50612610 50612135 ID=Msa1331170-mRNA-1:exon:14824;Parent=Msa1331170-mRNA-1
chr8_4 exon 50612870 50613177 50612870 ID=Msa1331170-mRNA-1:exon:14823;Parent=Msa1331170-mRNA-1
chr8_4 five_prime_UTR 50612870 50613177 50612870 ID=Msa1331170-mRNA-1:five_prime_utr;Parent=Msa1331170-mRNA-1
chr8_4 five_prime_UTR 50612172 50612610 50612172 ID=Msa1331170-mRNA-1:five_prime_utr;Parent=Msa1331170-mRNA-1
chr8_4 CDS 50612135 50612171 50612135 ID=Msa1331170-mRNA-1:cds;Parent=Msa1331170-mRNA-1
chr8_4 CDS 50611931 50612014 50611931 ID=Msa1331170-mRNA-1:cds;Parent=Msa1331170-mRNA-1
chr8_4 CDS 50609674 50609891 50609674 ID=Msa1331170-mRNA-1:cds;Parent=Msa1331170-mRNA-1
chr8_4 CDS 50609490 50609664 50609490 ID=Msa1331170-mRNA-1:cds;Parent=Msa1331170-mRNA-1
chr8_4 CDS 50608197 50608296 50608197 ID=Msa1331170-mRNA-1:cds;Parent=Msa1331170-mRNA-1
chr8_4 CDS 50607948 50608075 50607948 ID=Msa1331170-mRNA-1:cds;Parent=Msa1331170-mRNA-1
chr8_4 CDS 50607335 50607443 50607335 ID=Msa1331170-mRNA-1:cds;Parent=Msa1331170-mRNA-1
chr8_4 CDS 50606751 50606820 50606751 ID=Msa1331170-mRNA-1:cds;Parent=Msa1331170-mRNA-1
chr8_4 CDS 50606573 50606668 50606573 ID=Msa1331170-mRNA-1:cds;Parent=Msa1331170-mRNA-1
chr8_4 CDS 50605765 50606214 50605765 ID=Msa1331170-mRNA-1:cds;Parent=Msa1331170-mRNA-1
chr8_4 three_prime_UTR 50604905 50605764 50604905 ID=Msa1331170-mRNA-1:three_prime_utr;Parent=Msa1331170-mRNA-1
chr8_4 three_prime_UTR 50604174 50604777 50604174 ID=Msa1331170-mRNA-1:three_prime_utr;Parent=Msa1331170-mRNA-1
Gene Sequence

>Msa1331170

ATGGAGCTTCCTCAAGCACGTTCTTATGGAGCCGAAGGAGCAGGGAGGAAATCGACGCATGATTTTTTGTCGCTATACAGTAATTCAACTGCCGAACAAGATCCAAGGCCATCTGCTCAAGCAAGTTTCCTCAAGACCCATGATTTCTTGCGGCCACTAGAGGAGGTAGAAGCCAAATCCAGTGCCAAGGAAGAAGCCACAGATGAAATCTCATCGGTGGTTGAGAAGCAACCCCCTTTAGCAACACCAGCTTCATCAGTTGAGCACCTCTTACCTGGAGGAATTGGGACTTATAGTATCAGCCACATTAATTCCTGCGTGAATAATAATAATCAAAGGGCAGAAGCATCATCACTTTTCACTGTGCATCAAGCAACTAGTGCGGATAGAAATGATGACAACTCCAACTGCAGCTCACATACTTCAAGCGGTTTCACATTGTGGGAAGAGTCTGAGATTAGAAAGGGAAAGACAGGAAAGGAGAATAATGTTGGGGACAAACCCATTATAGGAGATTCTGCTGCTAAGTTAGGTCAGTGGACATTGAAGGAGCGAACGTCTCAATCGTTTTCTAACAATCATCATGGCAGCTTCAACTCTCGCTCTTCATCTCAGACAACTGGACAGAAGAACCAGAGTTTTATGGAAATGATGAAATCTGCACAGGATTGTGCCCAGGATGAAGAGCTAGAAAATGAAGGAACGTTTTTTCTCAAGAGAGAATCCTCGAATGTTCAAAGAGGAGAACTAAGGGTGAGAGTGGACGGCAAGAGTACCGATCAAAAGCCAAACACACCAAGATCAAAACATTCTGCAACAGAGCAGCGAAGAAGAAGCAAAATTAATGACAGGTTTCAGATGCTACGAGAGCTTATTCCACACAGTGATCAAAAGAGGGACAAAGCATCCTTTTTGTTAGAGGTCATTGAGTACATTCACTTTTTACAAGAGAAGGTTCATAAGTATGAAGGTTCATTCCAAGGTTGGAATAACGAGCCAGAAAAACTGATGCCATGGAGAAATAATGACAGGCCAGCAGAAAGTTTTCAATCTCGTGGCGCAAATGGTGGGTCTAATCCATCTCCAACATTGCTGTTTGCTTCAAAGGTTGACGAGAAAAACATCACCATCTCCCCAACAACTCATGGGGGTATCCATAATGTAGAATCTGGCTTGAGCACAACAACGGCCATGAAGACAATAGATCATCCGTCTGGAATAACAAACAAGGCTTTTCCAAGTCCTATTTCTTCCCAACCAAATTTCTTAACTTCAACCCAAATCGGAGGTTTAGGTGGAGCAGTGTCTCAGCTCAGACGTAGATTATCATCTGATGCAGAGAACACCAATTATCAACCTTCAGTAGAATCTCAGACTATGACTTCAACCAGTGAAAAGCTGAAAGAGAAAGAGCTCACCATTGAAGGAGGTGCCATTAGCATATCAAGTGTGTACTCACAAGGGTGA
Protein sequence

>Msa1331170

MELPQARSYGAEGAGRKSTHDFLSLYSNSTAEQDPRPSAQASFLKTHDFLRPLEEVEAKSSAKEEATDEISSVVEKQPPLATPASSVEHLLPGGIGTYSISHINSCVNNNNQRAEASSLFTVHQATSADRNDDNSNCSSHTSSGFTLWEESEIRKGKTGKENNVGDKPIIGDSAAKLGQWTLKERTSQSFSNNHHGSFNSRSSSQTTGQKNQSFMEMMKSAQDCAQDEELENEGTFFLKRESSNVQRGELRVRVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWNNEPEKLMPWRNNDRPAESFQSRGANGGSNPSPTLLFASKVDEKNITISPTTHGGIHNVESGLSTTTAMKTIDHPSGITNKAFPSPISSQPNFLTSTQIGGLGGAVSQLRRRLSSDAENTNYQPSVESQTMTSTSEKLKEKELTIEGGAISISSVYSQG*