Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1331110 | KEH32062.1 | 86.376 | 367 | 20 | 1 | 2 | 368 | 102 | 438 | 0.0 | 635 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1331110 | sp|Q9LEZ3|BIM1_ARATH | 44.013 | 309 | 105 | 9 | 13 | 319 | 253 | 495 | 8.43e-58 | 199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1331110 | A0A072UQV4 | 86.376 | 367 | 20 | 1 | 2 | 368 | 102 | 438 | 0.0 | 635 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1331110 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1260420 | Msa1331110 | 0.876023 | 1.941154e-68 | -8.615850e-47 |
| Msa1300260 | Msa1331110 | 0.804721 | 1.885419e-49 | -8.615850e-47 |
| Msa1331110 | Msa1331170 | 0.824884 | 6.336555e-54 | -8.615850e-47 |
| Msa1212900 | Msa1331110 | 0.828051 | 1.114209e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1331110 | MtrunA17_Chr4g0061791 | 86.376 | 367 | 20 | 1 | 2 | 368 | 234 | 570 | 0.0 | 634 |
| Msa1331110 | MtrunA17_Chr5g0420701 | 41.311 | 351 | 143 | 9 | 24 | 364 | 35 | 332 | 4.98e-70 | 223 |
| Msa1331110 | MtrunA17_Chr7g0220371 | 38.188 | 309 | 136 | 8 | 21 | 319 | 37 | 300 | 6.82e-46 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1331110 | AT5G08130.3 | 44.337 | 309 | 103 | 9 | 13 | 319 | 133 | 374 | 6.33e-61 | 201 |
| Msa1331110 | AT5G08130.1 | 44.013 | 309 | 105 | 9 | 13 | 319 | 133 | 375 | 2.18e-60 | 200 |
| Msa1331110 | AT5G08130.5 | 44.337 | 309 | 103 | 9 | 13 | 319 | 257 | 498 | 1.95e-59 | 201 |
| Msa1331110 | AT5G08130.7 | 44.337 | 309 | 103 | 9 | 13 | 319 | 253 | 494 | 2.06e-59 | 201 |
| Msa1331110 | AT5G08130.8 | 44.013 | 309 | 105 | 9 | 13 | 319 | 257 | 499 | 7.29e-59 | 199 |
| Msa1331110 | AT5G08130.6 | 44.013 | 309 | 105 | 9 | 13 | 319 | 253 | 495 | 7.71e-59 | 199 |
| Msa1331110 | AT5G08130.2 | 44.013 | 309 | 105 | 9 | 13 | 319 | 253 | 495 | 8.57e-59 | 199 |
| Msa1331110 | AT5G08130.4 | 44.013 | 309 | 105 | 9 | 13 | 319 | 253 | 495 | 8.57e-59 | 199 |
| Msa1331110 | AT1G69010.1 | 40.333 | 300 | 112 | 11 | 24 | 319 | 36 | 272 | 2.90e-50 | 171 |
| Msa1331110 | AT5G38860.1 | 34.228 | 298 | 128 | 6 | 22 | 317 | 21 | 252 | 3.51e-38 | 139 |
| Msa1331110 | AT5G38860.2 | 44.828 | 174 | 64 | 5 | 22 | 172 | 21 | 185 | 2.84e-34 | 126 |
Find 103 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCATTTGTGGATAGAAAT+TGG | 0.227383 | 8_4:+50520915 | Msa1331110:CDS |
| TGGGTTGAAGTTAAGAAATT+TGG | 0.265205 | 8_4:-50520596 | None:intergenic |
| TTCTACTGAAGGTTGATAAT+TGG | 0.293752 | 8_4:-50520684 | None:intergenic |
| CTCCACCTAAACCTCCGATT+TGG | 0.310407 | 8_4:-50520616 | None:intergenic |
| AAGTTGTGTTGGACATGATA+TGG | 0.317695 | 8_4:+50520878 | Msa1331110:intron |
| AAATTTGGTTGGGAAGAAAT+AGG | 0.321463 | 8_4:-50520581 | None:intergenic |
| CTTAGTTTGTTGGGATCCTT+AGG | 0.342893 | 8_4:+50522048 | Msa1331110:three_prime_UTR |
| TGAATTTACCTCTAACAAAA+AGG | 0.343203 | 8_4:-50519806 | None:intergenic |
| ATCTTCCTTTGATTCTTAGA+AGG | 0.344596 | 8_4:-50521806 | None:intergenic |
| AACATTGCTGTTTGCTTCAA+AGG | 0.352246 | 8_4:+50520424 | Msa1331110:CDS |
| TCAACCCAAATCGGAGGTTT+AGG | 0.354794 | 8_4:+50520611 | Msa1331110:CDS |
| TCAAGCCAGATTCTACATTA+TGG | 0.356652 | 8_4:-50520493 | None:intergenic |
| ATGTAGTGTCTTAGTTTGTT+GGG | 0.370568 | 8_4:+50522039 | Msa1331110:three_prime_UTR |
| CATGTAGTGTCTTAGTTTGT+TGG | 0.372497 | 8_4:+50522038 | Msa1331110:three_prime_UTR |
| ACACATGCCTTGCAGAGTTC+AGG | 0.377988 | 8_4:+50521547 | Msa1331110:CDS |
| GGGGTATTTATTTCCTGTGC+TGG | 0.378434 | 8_4:+50521983 | Msa1331110:three_prime_UTR |
| TTTATCACAGGCTAGCATTT+CGG | 0.379312 | 8_4:+50521576 | Msa1331110:CDS |
| CGGATGATCTATTGTCTTCA+TGG | 0.382464 | 8_4:-50520528 | None:intergenic |
| TCCACCTAAACCTCCGATTT+GGG | 0.392555 | 8_4:-50520615 | None:intergenic |
| CATCCCCTAGTGAGCATTTG+TGG | 0.408785 | 8_4:+50520904 | Msa1331110:CDS |
| CAAAGTAAATGTGCTATACT+TGG | 0.413343 | 8_4:+50521504 | Msa1331110:intron |
| CACATTGGCATTGGTATGTC+TGG | 0.415087 | 8_4:-50521634 | None:intergenic |
| TTCTTAACTTCAACCCAAAT+CGG | 0.419263 | 8_4:+50520602 | Msa1331110:CDS |
| TTGTTTACTTGACCTTTCCT+TGG | 0.424889 | 8_4:+50522348 | Msa1331110:three_prime_UTR |
| AATTACCTCTTTGACATTCG+AGG | 0.433236 | 8_4:-50518595 | None:intergenic |
| CAATCTCGTGGCGCAAATGG+TGG | 0.441241 | 8_4:+50520386 | Msa1331110:CDS |
| AATCTTGAAAAGTATCTCAT+AGG | 0.441412 | 8_4:-50522326 | None:intergenic |
| CTGATTATACAGGAGAACTA+AGG | 0.441891 | 8_4:+50519117 | Msa1331110:intron |
| CTGGCTCGTTATTCCAACCT+TGG | 0.443215 | 8_4:-50519958 | None:intergenic |
| ATTTCGGTGCAAATTGAACT+TGG | 0.449045 | 8_4:+50521592 | Msa1331110:CDS |
| CGCTCTGGCTCTAGAGTCAC+TGG | 0.450006 | 8_4:+50521830 | Msa1331110:CDS |
| GGTATCCATAATGTAGAATC+TGG | 0.451732 | 8_4:+50520488 | Msa1331110:CDS |
| GGTTGGGAAGAAATAGGACT+TGG | 0.461704 | 8_4:-50520575 | None:intergenic |
| TCTATCCACAAATGCTCACT+AGG | 0.466076 | 8_4:-50520909 | None:intergenic |
| GCTGTAAATTAGTAAACTCT+TGG | 0.466747 | 8_4:+50522174 | Msa1331110:three_prime_UTR |
| GCTATACTTGGACAGGTTGT+TGG | 0.468086 | 8_4:+50521516 | Msa1331110:CDS |
| ACCATCTCCCCAACAACTCA+TGG | 0.472821 | 8_4:+50520464 | Msa1331110:CDS |
| TGAAGTTAAGAAATTTGGTT+GGG | 0.473775 | 8_4:-50520591 | None:intergenic |
| GCTAATGGCACCTCCTTCAA+TGG | 0.484672 | 8_4:-50520756 | None:intergenic |
| CTAAATATATATAATTATAG+AGG | 0.485547 | 8_4:+50522107 | Msa1331110:three_prime_UTR |
| TTTGAAGCAAACAGCAATGT+TGG | 0.487282 | 8_4:-50520422 | None:intergenic |
| CGAGATTGAAAACTTTCTGC+TGG | 0.488725 | 8_4:-50520371 | None:intergenic |
| TTTCAATCTCGTGGCGCAAA+TGG | 0.497489 | 8_4:+50520383 | Msa1331110:CDS |
| GAGAAAGAGCTCACCATTGA+AGG | 0.497721 | 8_4:+50520743 | Msa1331110:CDS |
| ATGAAGGTTCATTCCAAGGT+TGG | 0.500331 | 8_4:+50519945 | Msa1331110:CDS |
| TGCTGGATTATTATCCTGCA+TGG | 0.504277 | 8_4:+50522000 | Msa1331110:three_prime_UTR |
| GCCTTGTTTGTTATTCCAGA+CGG | 0.512631 | 8_4:-50520548 | None:intergenic |
| TAAATGTGCTATACTTGGAC+AGG | 0.513308 | 8_4:+50521509 | Msa1331110:CDS |
| CCCATGAGTTGTTGGGGAGA+TGG | 0.517548 | 8_4:-50520465 | None:intergenic |
| TTGAAGTTAAGAAATTTGGT+TGG | 0.519525 | 8_4:-50520592 | None:intergenic |
| GTACACACTTGATATGCTAA+TGG | 0.523913 | 8_4:-50520771 | None:intergenic |
| AAGACAATAGATCATCCGTC+TGG | 0.528087 | 8_4:+50520533 | Msa1331110:CDS |
| AATGCCAATGTGTGTTTCCA+AGG | 0.530445 | 8_4:+50521645 | Msa1331110:CDS |
| TTGGAAACACACATTGGCAT+TGG | 0.530708 | 8_4:-50521643 | None:intergenic |
| TTCAGGAGTGGATTTATCAC+AGG | 0.531531 | 8_4:+50521564 | Msa1331110:CDS |
| AATCAAAGGAAGATGCGCTC+TGG | 0.532036 | 8_4:+50521815 | Msa1331110:CDS |
| TTTATTAGCTATCACAATGA+GGG | 0.532937 | 8_4:-50522296 | None:intergenic |
| TTCCACACAGTGATCAAAAG+AGG | 0.537014 | 8_4:+50519773 | Msa1331110:CDS |
| AAGATCCTTCTAAGAATCAA+AGG | 0.539351 | 8_4:+50521801 | Msa1331110:CDS |
| CCATCTCCCCAACAACTCAT+GGG | 0.540580 | 8_4:+50520465 | Msa1331110:CDS |
| GAGAAGGTTCATAAGTATGA+AGG | 0.541707 | 8_4:+50519929 | Msa1331110:CDS |
| GAAGAAGCAAAATTAATGAC+AGG | 0.542133 | 8_4:+50519216 | Msa1331110:CDS |
| GCAAACAGCAATGTTGGAGA+TGG | 0.547592 | 8_4:-50520416 | None:intergenic |
| AAGTATGAAGGTTCATTCCA+AGG | 0.551145 | 8_4:+50519941 | Msa1331110:CDS |
| AATCTCGTGGCGCAAATGGT+GGG | 0.551190 | 8_4:+50520387 | Msa1331110:CDS |
| CTATCCACAAATGCTCACTA+GGG | 0.558631 | 8_4:-50520908 | None:intergenic |
| CAAAGCAGAGAAATAATGAC+AGG | 0.558692 | 8_4:+50520348 | Msa1331110:intron |
| GAACTAAGGGTGAGAGTGGA+CGG | 0.560606 | 8_4:+50519131 | Msa1331110:CDS |
| AGTTTACTAATTTACAGCAA+TGG | 0.566532 | 8_4:-50522169 | None:intergenic |
| ACCCAAATCGGAGGTTTAGG+TGG | 0.566780 | 8_4:+50520614 | Msa1331110:CDS |
| TATAAATAATGAGCTACGGA+AGG | 0.570947 | 8_4:-50522265 | None:intergenic |
| AAAACAGCTTGTATCAGTAT+GGG | 0.573845 | 8_4:-50522133 | None:intergenic |
| ATGAAGAGCTAGAAAATGAA+GGG | 0.575416 | 8_4:+50518548 | None:intergenic |
| ATAGTCTGAGATTCTACTGA+AGG | 0.581921 | 8_4:-50520695 | None:intergenic |
| AGGCTATAAATAATGAGCTA+CGG | 0.582243 | 8_4:-50522269 | None:intergenic |
| TGCCTTGCAGAGTTCAGGAG+TGG | 0.584050 | 8_4:+50521552 | Msa1331110:CDS |
| ACAGTCAATCTCATCCATGC+AGG | 0.585678 | 8_4:-50522014 | None:intergenic |
| ATAAATAATGAGCTACGGAA+GGG | 0.588340 | 8_4:-50522264 | None:intergenic |
| GATAGAAGCAATCCAAGGAA+AGG | 0.589019 | 8_4:-50522360 | None:intergenic |
| GCAGGATAATAATCCAGCAC+AGG | 0.595198 | 8_4:-50521996 | None:intergenic |
| TAAATAATGAGCTACGGAAG+GGG | 0.597042 | 8_4:-50522263 | None:intergenic |
| ATCCACTCCTGAACTCTGCA+AGG | 0.600178 | 8_4:-50521554 | None:intergenic |
| AGGAGAACTAAGGGTGAGAG+TGG | 0.602089 | 8_4:+50519127 | Msa1331110:intron |
| TTAACTTCAACCCAAATCGG+AGG | 0.605590 | 8_4:+50520605 | Msa1331110:CDS |
| TGATTATACAGGAGAACTAA+GGG | 0.608296 | 8_4:+50519118 | Msa1331110:intron |
| TGAGGAAAGAATGAATGTAA+CGG | 0.614056 | 8_4:-50521910 | None:intergenic |
| GTGGATAGAAATTGGAGATG+TGG | 0.617637 | 8_4:+50520923 | Msa1331110:CDS |
| GCATTGGTATGTCTGGTCTG+AGG | 0.617749 | 8_4:-50521627 | None:intergenic |
| ATAGAAATTGGAGATGTGGC+AGG | 0.617759 | 8_4:+50520927 | Msa1331110:CDS |
| ATATCAAGTGTGTACTCACA+AGG | 0.619435 | 8_4:+50520779 | Msa1331110:CDS |
| AGAATCCTCGAATGTCAAAG+AGG | 0.623632 | 8_4:+50518590 | Msa1331110:CDS |
| AAAGAGCTCACCATTGAAGG+AGG | 0.629369 | 8_4:+50520746 | Msa1331110:CDS |
| TATACCTTGGAAACACACAT+TGG | 0.634078 | 8_4:-50521649 | None:intergenic |
| CATCTCCCCAACAACTCATG+GGG | 0.638824 | 8_4:+50520466 | Msa1331110:CDS |
| TCCACACAGTGATCAAAAGA+GGG | 0.643944 | 8_4:+50519774 | Msa1331110:CDS |
| GCTATCACAATGAGGGTGTG+AGG | 0.644440 | 8_4:-50522289 | None:intergenic |
| ACAGCTTGTATCAGTATGGG+AGG | 0.645446 | 8_4:-50522130 | None:intergenic |
| ATCTGGCTTGAGCACAACAA+CGG | 0.650337 | 8_4:+50520505 | Msa1331110:CDS |
| GAATTGATAGAAGCAATCCA+AGG | 0.672992 | 8_4:-50522365 | None:intergenic |
| TATCCACAAATGCTCACTAG+GGG | 0.675975 | 8_4:-50520907 | None:intergenic |
| TCCGTCTGGAATAACAAACA+AGG | 0.684989 | 8_4:+50520547 | Msa1331110:CDS |
| TATCAAGTGTGTACTCACAA+GGG | 0.699426 | 8_4:+50520780 | Msa1331110:CDS |
| ATCTCCCCAACAACTCATGG+GGG | 0.722606 | 8_4:+50520467 | Msa1331110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTGAAATAAAACTTAAAA+AGG | - | chr8_4:50518662-50518681 | None:intergenic | 10.0% |
| !! | AAAGGAAAAAAAAAAAAAAA+AGG | + | chr8_4:50519489-50519508 | Msa1331110:intron | 10.0% |
| !! | ATAATTGATAAAAATTATTG+AGG | - | chr8_4:50521931-50521950 | None:intergenic | 10.0% |
| !!! | TAATTTTTATCAATTATTTG+GGG | + | chr8_4:50521934-50521953 | Msa1331110:three_prime_UTR | 10.0% |
| !!! | TTTTAAAATTAATTTTTGGA+AGG | + | chr8_4:50521962-50521981 | Msa1331110:three_prime_UTR | 10.0% |
| !!! | TTTAAAATTAATTTTTGGAA+GGG | + | chr8_4:50521963-50521982 | Msa1331110:three_prime_UTR | 10.0% |
| !! | CTAAATATATATAATTATAG+AGG | + | chr8_4:50522107-50522126 | Msa1331110:three_prime_UTR | 10.0% |
| !!! | ATTTTTTTTAACATTGATTT+TGG | + | chr8_4:50522212-50522231 | Msa1331110:three_prime_UTR | 10.0% |
| !! | TTTATTAGATTTATGGTTTA+TGG | + | chr8_4:50519566-50519585 | Msa1331110:intron | 15.0% |
| !! | TTATTAGATTTATGGTTTAT+GGG | + | chr8_4:50519567-50519586 | Msa1331110:intron | 15.0% |
| !! | GTTTAATCTAAATTATTTGT+AGG | + | chr8_4:50519880-50519899 | Msa1331110:intron | 15.0% |
| !! | TCATGTTTATAAAGAAATAA+AGG | - | chr8_4:50520161-50520180 | None:intergenic | 15.0% |
| !! | AATTTAAATCCATTAACAAT+AGG | - | chr8_4:50520285-50520304 | None:intergenic | 15.0% |
| !! | GAATATATAAATACATTAGT+AGG | - | chr8_4:50521005-50521024 | None:intergenic | 15.0% |
| !! | ATAAATATTTCCACAATATA+TGG | + | chr8_4:50521310-50521329 | Msa1331110:intron | 15.0% |
| !! | AAATGATAAATGTTGTAATT+AGG | + | chr8_4:50521438-50521457 | Msa1331110:intron | 15.0% |
| !!! | TTAAAATTAATTTTTGGAAG+GGG | + | chr8_4:50521964-50521983 | Msa1331110:three_prime_UTR | 15.0% |
| !! | AATTTGGCAACTATAATTAA+AGG | - | chr8_4:50518884-50518903 | None:intergenic | 20.0% |
| !!! | GAATTATTTACTGATTATAC+AGG | + | chr8_4:50519107-50519126 | Msa1331110:intron | 20.0% |
| !!! | AGTTTCATTCTTTTTTAGAA+AGG | + | chr8_4:50519471-50519490 | Msa1331110:intron | 20.0% |
| !! | ACAACTTCAAAATAGTATAA+AGG | - | chr8_4:50520865-50520884 | None:intergenic | 20.0% |
| !!! | AACAATTTTTTTAATCCTCA+TGG | - | chr8_4:50521034-50521053 | None:intergenic | 20.0% |
| !! | TAAGAAGCAAATTGAAATTA+TGG | - | chr8_4:50521175-50521194 | None:intergenic | 20.0% |
| !! | ATGTAAACTATAACATAAAG+AGG | - | chr8_4:50521217-50521236 | None:intergenic | 20.0% |
| !! | TGTATAATGAATTGTTTGAA+TGG | - | chr8_4:50521276-50521295 | None:intergenic | 20.0% |
| !! | TATAAAAAGACTTTACAAGA+GGG | - | chr8_4:50521688-50521707 | None:intergenic | 20.0% |
| !! | TTATAAAAAGACTTTACAAG+AGG | - | chr8_4:50521689-50521708 | None:intergenic | 20.0% |
| !! | ACAGATTAGATAATAATACA+TGG | - | chr8_4:50521757-50521776 | None:intergenic | 20.0% |
| !!! | ATGATGCATATTATTTTGTT+GGG | - | chr8_4:50522079-50522098 | None:intergenic | 20.0% |
| !!! | AATGATGCATATTATTTTGT+TGG | - | chr8_4:50522080-50522099 | None:intergenic | 20.0% |
| !!! | TTTTTTAACATTGATTTTGG+TGG | + | chr8_4:50522215-50522234 | Msa1331110:three_prime_UTR | 20.0% |
| !!! | ATCATTTTAACTTTGTGATG+AGG | + | chr8_4:50518831-50518850 | Msa1331110:intron | 25.0% |
| !!! | TCATTTTAACTTTGTGATGA+GGG | + | chr8_4:50518832-50518851 | Msa1331110:intron | 25.0% |
| !!! | GTGGTTTTAATATTATGTCT+CGG | + | chr8_4:50518985-50519004 | Msa1331110:intron | 25.0% |
| ! | AATTCTATCACCATATTAGT+AGG | - | chr8_4:50519251-50519270 | None:intergenic | 25.0% |
| ! | GCAGTTCATAATTAAGAAAA+GGG | - | chr8_4:50519331-50519350 | None:intergenic | 25.0% |
| ! | TGCAGTTCATAATTAAGAAA+AGG | - | chr8_4:50519332-50519351 | None:intergenic | 25.0% |
| !!! | TTTCCTAAAAGCCATTTTTA+GGG | - | chr8_4:50519519-50519538 | None:intergenic | 25.0% |
| !!! | TTTTCCTAAAAGCCATTTTT+AGG | - | chr8_4:50519520-50519539 | None:intergenic | 25.0% |
| ! | TAACAATGATTCCAATTAAG+TGG | + | chr8_4:50519541-50519560 | Msa1331110:intron | 25.0% |
| ! | TCTAATAAAGTCCACTTAAT+TGG | - | chr8_4:50519555-50519574 | None:intergenic | 25.0% |
| !! | AGTGGACTTTATTAGATTTA+TGG | + | chr8_4:50519559-50519578 | Msa1331110:intron | 25.0% |
| ! | CAAATAAAATCAGGTAATGA+TGG | - | chr8_4:50519690-50519709 | None:intergenic | 25.0% |
| ! | GATTATGAGCAAATAAAATC+AGG | - | chr8_4:50519699-50519718 | None:intergenic | 25.0% |
| ! | AACATTTGAATCAAACATGT+AGG | + | chr8_4:50519728-50519747 | Msa1331110:intron | 25.0% |
| ! | TGAATTTACCTCTAACAAAA+AGG | - | chr8_4:50519809-50519828 | None:intergenic | 25.0% |
| ! | TTGTTAGAGGTAAATTCATA+CGG | + | chr8_4:50519811-50519830 | Msa1331110:intron | 25.0% |
| ! | CAAAATAATAGCTTCATTGA+TGG | + | chr8_4:50520045-50520064 | Msa1331110:intron | 25.0% |
| ! | TTCTTTATAAACATGATCAG+AGG | + | chr8_4:50520165-50520184 | Msa1331110:intron | 25.0% |
| ! | TCTTTATAAACATGATCAGA+GGG | + | chr8_4:50520166-50520185 | Msa1331110:intron | 25.0% |
| !! | GAAAAATGTGAATCAGTTTT+TGG | - | chr8_4:50520324-50520343 | None:intergenic | 25.0% |
| ! | TGAAGTTAAGAAATTTGGTT+GGG | - | chr8_4:50520594-50520613 | None:intergenic | 25.0% |
| ! | TTGAAGTTAAGAAATTTGGT+TGG | - | chr8_4:50520595-50520614 | None:intergenic | 25.0% |
| !!! | ATACTATTTTGAAGTTGTGT+TGG | + | chr8_4:50520867-50520886 | Msa1331110:intron | 25.0% |
| ! | GAATTTCGAGAAAAGAAAAT+GGG | - | chr8_4:50521414-50521433 | None:intergenic | 25.0% |
| ! | AGAATTTCGAGAAAAGAAAA+TGG | - | chr8_4:50521415-50521434 | None:intergenic | 25.0% |
| ! | AATGCTAACAAAAACCAATT+TGG | - | chr8_4:50521467-50521486 | None:intergenic | 25.0% |
| ! | TAATACATGGTTTCATAATG+TGG | - | chr8_4:50521744-50521763 | None:intergenic | 25.0% |
| !!! | TGATGCATATTATTTTGTTG+GGG | - | chr8_4:50522078-50522097 | None:intergenic | 25.0% |
| ! | AGTTTACTAATTTACAGCAA+TGG | - | chr8_4:50522172-50522191 | None:intergenic | 25.0% |
| ! | TTTATTAGCTATCACAATGA+GGG | - | chr8_4:50522299-50522318 | None:intergenic | 25.0% |
| !! | TTTTATTAGCTATCACAATG+AGG | - | chr8_4:50522300-50522319 | None:intergenic | 25.0% |
| !!! | AATCTTGAAAAGTATCTCAT+AGG | - | chr8_4:50522329-50522348 | None:intergenic | 25.0% |
| TATATTCTCCTTGTTGAGAA+AGG | + | chr8_4:50518620-50518639 | Msa1331110:intron | 30.0% | |
| TTAGTCAGATCAATGAAAAG+GGG | - | chr8_4:50518951-50518970 | None:intergenic | 30.0% | |
| GTTAGTCAGATCAATGAAAA+GGG | - | chr8_4:50518952-50518971 | None:intergenic | 30.0% | |
| AGTTAGTCAGATCAATGAAA+AGG | - | chr8_4:50518953-50518972 | None:intergenic | 30.0% | |
| ! | ACTAACTAGTGTTTTGTAAG+TGG | + | chr8_4:50518966-50518985 | Msa1331110:intron | 30.0% |
| TTTGAGTATATAACTCGTTG+TGG | - | chr8_4:50519027-50519046 | None:intergenic | 30.0% | |
| ACAACGAGTTATATACTCAA+AGG | + | chr8_4:50519026-50519045 | Msa1331110:intron | 30.0% | |
| CAACGAGTTATATACTCAAA+GGG | + | chr8_4:50519027-50519046 | Msa1331110:intron | 30.0% | |
| ! | TTGTTCGAAAAGATTTTACG+AGG | + | chr8_4:50519073-50519092 | Msa1331110:intron | 30.0% |
| TGATTATACAGGAGAACTAA+GGG | + | chr8_4:50519118-50519137 | Msa1331110:intron | 30.0% | |
| GAAGAAGCAAAATTAATGAC+AGG | + | chr8_4:50519216-50519235 | Msa1331110:CDS | 30.0% | |
| !! | GTTAGTCTTACCTACTAATA+TGG | + | chr8_4:50519238-50519257 | Msa1331110:intron | 30.0% |
| ! | AAAAAGGTGTACCCTAAAAA+TGG | + | chr8_4:50519505-50519524 | Msa1331110:intron | 30.0% |
| !!! | CATTCACTTTTTACAAGAGA+AGG | + | chr8_4:50519913-50519932 | Msa1331110:CDS | 30.0% |
| AATCTTTCACAGCTTAAGAT+AGG | - | chr8_4:50520017-50520036 | None:intergenic | 30.0% | |
| TTTCTCATAAAATGATCTGG+AGG | - | chr8_4:50520088-50520107 | None:intergenic | 30.0% | |
| ACGTTTCTCATAAAATGATC+TGG | - | chr8_4:50520091-50520110 | None:intergenic | 30.0% | |
| CAATCAAAACTATTAGGTCT+AGG | - | chr8_4:50520132-50520151 | None:intergenic | 30.0% | |
| !!! | ACCTAATAGTTTTGATTGTC+TGG | + | chr8_4:50520134-50520153 | Msa1331110:intron | 30.0% |
| ACCAGACAATCAAAACTATT+AGG | - | chr8_4:50520138-50520157 | None:intergenic | 30.0% | |
| ATCACATAGCCTATTGTTAA+TGG | + | chr8_4:50520273-50520292 | Msa1331110:intron | 30.0% | |
| !! | AATGTGAATCAGTTTTTGGA+TGG | - | chr8_4:50520320-50520339 | None:intergenic | 30.0% |
| AAATTTGGTTGGGAAGAAAT+AGG | - | chr8_4:50520584-50520603 | None:intergenic | 30.0% | |
| ! | TGGGTTGAAGTTAAGAAATT+TGG | - | chr8_4:50520599-50520618 | None:intergenic | 30.0% |
| TTCTTAACTTCAACCCAAAT+CGG | + | chr8_4:50520602-50520621 | Msa1331110:CDS | 30.0% | |
| !! | TTCTACTGAAGGTTGATAAT+TGG | - | chr8_4:50520687-50520706 | None:intergenic | 30.0% |
| ATTGAATTGTTAGATGACTG+TGG | - | chr8_4:50520976-50520995 | None:intergenic | 30.0% | |
| !!! | TTTTTTTAATCCTCATGGCT+GGG | - | chr8_4:50521029-50521048 | None:intergenic | 30.0% |
| !!! | ATTTTTTTAATCCTCATGGC+TGG | - | chr8_4:50521030-50521049 | None:intergenic | 30.0% |
| TGAATTGTTTGAATGGAACA+GGG | - | chr8_4:50521269-50521288 | None:intergenic | 30.0% | |
| ATGAATTGTTTGAATGGAAC+AGG | - | chr8_4:50521270-50521289 | None:intergenic | 30.0% | |
| TTGTAATTAGGATGCCAAAT+TGG | + | chr8_4:50521450-50521469 | Msa1331110:intron | 30.0% | |
| CAAAGTAAATGTGCTATACT+TGG | + | chr8_4:50521504-50521523 | Msa1331110:intron | 30.0% | |
| CAATTTGAGCAAATATACCT+TGG | - | chr8_4:50521665-50521684 | None:intergenic | 30.0% | |
| ! | AAGATCCTTCTAAGAATCAA+AGG | + | chr8_4:50521801-50521820 | Msa1331110:CDS | 30.0% |
| ATCTTCCTTTGATTCTTAGA+AGG | - | chr8_4:50521809-50521828 | None:intergenic | 30.0% | |
| TGAGGAAAGAATGAATGTAA+CGG | - | chr8_4:50521913-50521932 | None:intergenic | 30.0% | |
| !! | ATGTAGTGTCTTAGTTTGTT+GGG | + | chr8_4:50522039-50522058 | Msa1331110:three_prime_UTR | 30.0% |
| !! | ATGCATATTATTTTGTTGGG+GGG | - | chr8_4:50522076-50522095 | None:intergenic | 30.0% |
| !! | GATGCATATTATTTTGTTGG+GGG | - | chr8_4:50522077-50522096 | None:intergenic | 30.0% |
| AAAACAGCTTGTATCAGTAT+GGG | - | chr8_4:50522136-50522155 | None:intergenic | 30.0% | |
| AAAAACAGCTTGTATCAGTA+TGG | - | chr8_4:50522137-50522156 | None:intergenic | 30.0% | |
| GCTGTAAATTAGTAAACTCT+TGG | + | chr8_4:50522174-50522193 | Msa1331110:three_prime_UTR | 30.0% | |
| ATAAATAATGAGCTACGGAA+GGG | - | chr8_4:50522267-50522286 | None:intergenic | 30.0% | |
| TATAAATAATGAGCTACGGA+AGG | - | chr8_4:50522268-50522287 | None:intergenic | 30.0% | |
| AGGCTATAAATAATGAGCTA+CGG | - | chr8_4:50522272-50522291 | None:intergenic | 30.0% | |
| AATTACCTCTTTGACATTCG+AGG | - | chr8_4:50518598-50518617 | None:intergenic | 35.0% | |
| CTGATTATACAGGAGAACTA+AGG | + | chr8_4:50519117-50519136 | Msa1331110:intron | 35.0% | |
| !!! | TGTTTTGATCTTGGTGTGTT+TGG | - | chr8_4:50519176-50519195 | None:intergenic | 35.0% |
| !!! | GTTGCAGAATGTTTTGATCT+TGG | - | chr8_4:50519185-50519204 | None:intergenic | 35.0% |
| CAACTAACTCGTTAAGCATT+AGG | - | chr8_4:50519436-50519455 | None:intergenic | 35.0% | |
| ! | GTACCCTAAAAATGGCTTTT+AGG | + | chr8_4:50519513-50519532 | Msa1331110:intron | 35.0% |
| !! | CAAAGCATCCTTTTTGTTAG+AGG | + | chr8_4:50519798-50519817 | Msa1331110:CDS | 35.0% |
| TAGAGGTAAATTCATACGGT+TGG | + | chr8_4:50519815-50519834 | Msa1331110:intron | 35.0% | |
| GAGAAGGTTCATAAGTATGA+AGG | + | chr8_4:50519929-50519948 | Msa1331110:CDS | 35.0% | |
| AAGTATGAAGGTTCATTCCA+AGG | + | chr8_4:50519941-50519960 | Msa1331110:CDS | 35.0% | |
| ! | TTCAAGTTTGATGTCCTTGT+TGG | + | chr8_4:50520196-50520215 | Msa1331110:intron | 35.0% |
| !! | AGATGCTTGTCTTGTTTAAG+TGG | + | chr8_4:50520236-50520255 | Msa1331110:intron | 35.0% |
| !! | GATGCTTGTCTTGTTTAAGT+GGG | + | chr8_4:50520237-50520256 | Msa1331110:intron | 35.0% |
| CAAAGCAGAGAAATAATGAC+AGG | + | chr8_4:50520348-50520367 | Msa1331110:intron | 35.0% | |
| ! | TTTGAAGCAAACAGCAATGT+TGG | - | chr8_4:50520425-50520444 | None:intergenic | 35.0% |
| !! | AACATTGCTGTTTGCTTCAA+AGG | + | chr8_4:50520424-50520443 | Msa1331110:CDS | 35.0% |
| GGTATCCATAATGTAGAATC+TGG | + | chr8_4:50520488-50520507 | Msa1331110:CDS | 35.0% | |
| TCAAGCCAGATTCTACATTA+TGG | - | chr8_4:50520496-50520515 | None:intergenic | 35.0% | |
| ! | ATAGTCTGAGATTCTACTGA+AGG | - | chr8_4:50520698-50520717 | None:intergenic | 35.0% |
| ! | TTTCTCTTTCAGCTTTTCAC+TGG | - | chr8_4:50520729-50520748 | None:intergenic | 35.0% |
| GTACACACTTGATATGCTAA+TGG | - | chr8_4:50520774-50520793 | None:intergenic | 35.0% | |
| ATATCAAGTGTGTACTCACA+AGG | + | chr8_4:50520779-50520798 | Msa1331110:CDS | 35.0% | |
| TATCAAGTGTGTACTCACAA+GGG | + | chr8_4:50520780-50520799 | Msa1331110:CDS | 35.0% | |
| AAGTTGTGTTGGACATGATA+TGG | + | chr8_4:50520878-50520897 | Msa1331110:intron | 35.0% | |
| GAGCATTTGTGGATAGAAAT+TGG | + | chr8_4:50520915-50520934 | Msa1331110:CDS | 35.0% | |
| AATTGTTAGATGACTGTGGA+TGG | - | chr8_4:50520972-50520991 | None:intergenic | 35.0% | |
| AGTGAAGTAAGTCCAAGTTT+AGG | - | chr8_4:50521087-50521106 | None:intergenic | 35.0% | |
| !! | CTAGGTTGATCCATATATTG+TGG | - | chr8_4:50521323-50521342 | None:intergenic | 35.0% |
| ! | AAGTTTTCCAACAACATGCT+AGG | - | chr8_4:50521341-50521360 | None:intergenic | 35.0% |
| TAAATGTGCTATACTTGGAC+AGG | + | chr8_4:50521509-50521528 | Msa1331110:CDS | 35.0% | |
| TTTATCACAGGCTAGCATTT+CGG | + | chr8_4:50521576-50521595 | Msa1331110:CDS | 35.0% | |
| ! | ATTTCGGTGCAAATTGAACT+TGG | + | chr8_4:50521592-50521611 | Msa1331110:CDS | 35.0% |
| TATACCTTGGAAACACACAT+TGG | - | chr8_4:50521652-50521671 | None:intergenic | 35.0% | |
| !! | CATGTAGTGTCTTAGTTTGT+TGG | + | chr8_4:50522038-50522057 | Msa1331110:three_prime_UTR | 35.0% |
| TAAATAATGAGCTACGGAAG+GGG | - | chr8_4:50522266-50522285 | None:intergenic | 35.0% | |
| TTGTTTACTTGACCTTTCCT+TGG | + | chr8_4:50522348-50522367 | Msa1331110:three_prime_UTR | 35.0% | |
| AGAATCCTCGAATGTCAAAG+AGG | + | chr8_4:50518590-50518609 | Msa1331110:CDS | 40.0% | |
| !!! | TGGTGTGTTTGGCTTTTGAT+CGG | - | chr8_4:50519165-50519184 | None:intergenic | 40.0% |
| AGAGAAGAATTCCGTGCTAT+TGG | + | chr8_4:50519382-50519401 | Msa1331110:intron | 40.0% | |
| ! | GAGAAGAATTCCGTGCTATT+GGG | + | chr8_4:50519383-50519402 | Msa1331110:intron | 40.0% |
| ! | AGTAAAAGTGTGGCTGAACA+AGG | - | chr8_4:50519597-50519616 | None:intergenic | 40.0% |
| ! | TTGTTCAGCCACACTTTTAC+TGG | + | chr8_4:50519596-50519615 | Msa1331110:intron | 40.0% |
| ! | TGTTCAGCCACACTTTTACT+GGG | + | chr8_4:50519597-50519616 | Msa1331110:intron | 40.0% |
| TTCCACACAGTGATCAAAAG+AGG | + | chr8_4:50519773-50519792 | Msa1331110:CDS | 40.0% | |
| TCCACACAGTGATCAAAAGA+GGG | + | chr8_4:50519774-50519793 | Msa1331110:CDS | 40.0% | |
| ATGAAGGTTCATTCCAAGGT+TGG | + | chr8_4:50519945-50519964 | Msa1331110:CDS | 40.0% | |
| ! | GAAAGTGTGGTATTTACCCA+TGG | - | chr8_4:50519995-50520014 | None:intergenic | 40.0% |
| CAGCTTAAGATAGGAAAGTG+TGG | - | chr8_4:50520008-50520027 | None:intergenic | 40.0% | |
| TTGCTCAGTCAATTCCAACA+AGG | - | chr8_4:50520213-50520232 | None:intergenic | 40.0% | |
| CGAGATTGAAAACTTTCTGC+TGG | - | chr8_4:50520374-50520393 | None:intergenic | 40.0% | |
| ! | GCAGAAAGTTTTCAATCTCG+TGG | + | chr8_4:50520374-50520393 | Msa1331110:CDS | 40.0% |
| CGGATGATCTATTGTCTTCA+TGG | - | chr8_4:50520531-50520550 | None:intergenic | 40.0% | |
| AAGACAATAGATCATCCGTC+TGG | + | chr8_4:50520533-50520552 | Msa1331110:CDS | 40.0% | |
| ! | TCCGTCTGGAATAACAAACA+AGG | + | chr8_4:50520547-50520566 | Msa1331110:CDS | 40.0% |
| !! | GCCTTGTTTGTTATTCCAGA+CGG | - | chr8_4:50520551-50520570 | None:intergenic | 40.0% |
| TTAACTTCAACCCAAATCGG+AGG | + | chr8_4:50520605-50520624 | Msa1331110:CDS | 40.0% | |
| TATCCACAAATGCTCACTAG+GGG | - | chr8_4:50520910-50520929 | None:intergenic | 40.0% | |
| CTATCCACAAATGCTCACTA+GGG | - | chr8_4:50520911-50520930 | None:intergenic | 40.0% | |
| TCTATCCACAAATGCTCACT+AGG | - | chr8_4:50520912-50520931 | None:intergenic | 40.0% | |
| GTGGATAGAAATTGGAGATG+TGG | + | chr8_4:50520923-50520942 | Msa1331110:CDS | 40.0% | |
| ATAGAAATTGGAGATGTGGC+AGG | + | chr8_4:50520927-50520946 | Msa1331110:CDS | 40.0% | |
| TATATATTCACCCAGCCATG+AGG | + | chr8_4:50521016-50521035 | Msa1331110:intron | 40.0% | |
| TTCTGTTTGCAGCCTAAACT+TGG | + | chr8_4:50521072-50521091 | Msa1331110:intron | 40.0% | |
| GTGGACATCTATTCAGAGAA+AGG | - | chr8_4:50521111-50521130 | None:intergenic | 40.0% | |
| AGCAACATGAATTGCACAAG+TGG | - | chr8_4:50521130-50521149 | None:intergenic | 40.0% | |
| ! | TTCAGGAGTGGATTTATCAC+AGG | + | chr8_4:50521564-50521583 | Msa1331110:CDS | 40.0% |
| TTGGAAACACACATTGGCAT+TGG | - | chr8_4:50521646-50521665 | None:intergenic | 40.0% | |
| AATGCCAATGTGTGTTTCCA+AGG | + | chr8_4:50521645-50521664 | Msa1331110:CDS | 40.0% | |
| AAGGATCTTCATCATCCTAG+GGG | - | chr8_4:50521790-50521809 | None:intergenic | 40.0% | |
| GAAGGATCTTCATCATCCTA+GGG | - | chr8_4:50521791-50521810 | None:intergenic | 40.0% | |
| AGAAGGATCTTCATCATCCT+AGG | - | chr8_4:50521792-50521811 | None:intergenic | 40.0% | |
| TGCTGGATTATTATCCTGCA+TGG | + | chr8_4:50522000-50522019 | Msa1331110:three_prime_UTR | 40.0% | |
| !! | CTTAGTTTGTTGGGATCCTT+AGG | + | chr8_4:50522048-50522067 | Msa1331110:three_prime_UTR | 40.0% |
| TGCTACTGCCTTTCTCAACA+AGG | - | chr8_4:50518631-50518650 | None:intergenic | 45.0% | |
| ! | AATTCCGTGCTATTGGGACT+TGG | + | chr8_4:50519389-50519408 | Msa1331110:intron | 45.0% |
| GACTTGGAGAGTAGTGTAAC+TGG | + | chr8_4:50519405-50519424 | Msa1331110:intron | 45.0% | |
| TGGAGAGTAGTGTAACTGGA+AGG | + | chr8_4:50519409-50519428 | Msa1331110:intron | 45.0% | |
| ! | GTTCAGCCACACTTTTACTG+GGG | + | chr8_4:50519598-50519617 | Msa1331110:intron | 45.0% |
| ! | TCCCTCTTTTGATCACTGTG+TGG | - | chr8_4:50519778-50519797 | None:intergenic | 45.0% |
| AGCCAGAAAAACTGATGCCA+TGG | + | chr8_4:50519975-50519994 | Msa1331110:CDS | 45.0% | |
| GCCAGAAAAACTGATGCCAT+GGG | + | chr8_4:50519976-50519995 | Msa1331110:CDS | 45.0% | |
| ! | ACCCATGGCATCAGTTTTTC+TGG | - | chr8_4:50519980-50519999 | None:intergenic | 45.0% |
| TTTCAATCTCGTGGCGCAAA+TGG | + | chr8_4:50520383-50520402 | Msa1331110:CDS | 45.0% | |
| GCAAACAGCAATGTTGGAGA+TGG | - | chr8_4:50520419-50520438 | None:intergenic | 45.0% | |
| ! | ATCTGGCTTGAGCACAACAA+CGG | + | chr8_4:50520505-50520524 | Msa1331110:CDS | 45.0% |
| GGTTGGGAAGAAATAGGACT+TGG | - | chr8_4:50520578-50520597 | None:intergenic | 45.0% | |
| TCAACCCAAATCGGAGGTTT+AGG | + | chr8_4:50520611-50520630 | Msa1331110:CDS | 45.0% | |
| TCCACCTAAACCTCCGATTT+GGG | - | chr8_4:50520618-50520637 | None:intergenic | 45.0% | |
| GAGAAAGAGCTCACCATTGA+AGG | + | chr8_4:50520743-50520762 | Msa1331110:CDS | 45.0% | |
| AAAGAGCTCACCATTGAAGG+AGG | + | chr8_4:50520746-50520765 | Msa1331110:CDS | 45.0% | |
| GGATCAACCTAGCATGTTGT+TGG | + | chr8_4:50521331-50521350 | Msa1331110:intron | 45.0% | |
| GCTATACTTGGACAGGTTGT+TGG | + | chr8_4:50521516-50521535 | Msa1331110:CDS | 45.0% | |
| !! | CACATTGGCATTGGTATGTC+TGG | - | chr8_4:50521637-50521656 | None:intergenic | 45.0% |
| ! | TCTGTCGATCATTTTCCCCT+AGG | + | chr8_4:50521772-50521791 | Msa1331110:intron | 45.0% |
| AATCAAAGGAAGATGCGCTC+TGG | + | chr8_4:50521815-50521834 | Msa1331110:CDS | 45.0% | |
| ! | GGGGTATTTATTTCCTGTGC+TGG | + | chr8_4:50521983-50522002 | Msa1331110:three_prime_UTR | 45.0% |
| GCAGGATAATAATCCAGCAC+AGG | - | chr8_4:50521999-50522018 | None:intergenic | 45.0% | |
| ACAGTCAATCTCATCCATGC+AGG | - | chr8_4:50522017-50522036 | None:intergenic | 45.0% | |
| ACAGCTTGTATCAGTATGGG+AGG | - | chr8_4:50522133-50522152 | None:intergenic | 45.0% | |
| !! | ATAATACTAAAAAATAAATT+TGG | - | chr8_4:50518900-50518919 | None:intergenic | 5.0% |
| !!! | AATAATTTTTATCAATTATT+TGG | + | chr8_4:50521932-50521951 | Msa1331110:three_prime_UTR | 5.0% |
| !!! | ATAATTTTTATCAATTATTT+GGG | + | chr8_4:50521933-50521952 | Msa1331110:three_prime_UTR | 5.0% |
| !!! | AACTTTTTAAAATTAATTTT+TGG | + | chr8_4:50521958-50521977 | Msa1331110:three_prime_UTR | 5.0% |
| AGGAGAACTAAGGGTGAGAG+TGG | + | chr8_4:50519127-50519146 | Msa1331110:intron | 50.0% | |
| GAACTAAGGGTGAGAGTGGA+CGG | + | chr8_4:50519131-50519150 | Msa1331110:CDS | 50.0% | |
| GAGACACTTGCAAACTGCGA+TGG | + | chr8_4:50519287-50519306 | Msa1331110:intron | 50.0% | |
| ACACTTGCAAACTGCGATGG+AGG | + | chr8_4:50519290-50519309 | Msa1331110:intron | 50.0% | |
| CTCTCCAAGTCCCAATAGCA+CGG | - | chr8_4:50519396-50519415 | None:intergenic | 50.0% | |
| ! | AGCCACACTTTTACTGGGGT+TGG | + | chr8_4:50519602-50519621 | Msa1331110:intron | 50.0% |
| ! | GCCACACTTTTACTGGGGTT+GGG | + | chr8_4:50519603-50519622 | Msa1331110:intron | 50.0% |
| TCCCAACCCCAGTAAAAGTG+TGG | - | chr8_4:50519607-50519626 | None:intergenic | 50.0% | |
| TTACTGGGGTTGGGATTGTC+TGG | + | chr8_4:50519612-50519631 | Msa1331110:intron | 50.0% | |
| ! | CTGGCTCGTTATTCCAACCT+TGG | - | chr8_4:50519961-50519980 | None:intergenic | 50.0% |
| AATCTCGTGGCGCAAATGGT+GGG | + | chr8_4:50520387-50520406 | Msa1331110:CDS | 50.0% | |
| ACCATCTCCCCAACAACTCA+TGG | + | chr8_4:50520464-50520483 | Msa1331110:CDS | 50.0% | |
| CCATCTCCCCAACAACTCAT+GGG | + | chr8_4:50520465-50520484 | Msa1331110:CDS | 50.0% | |
| CATCTCCCCAACAACTCATG+GGG | + | chr8_4:50520466-50520485 | Msa1331110:CDS | 50.0% | |
| ATCTCCCCAACAACTCATGG+GGG | + | chr8_4:50520467-50520486 | Msa1331110:CDS | 50.0% | |
| GATACCCCCATGAGTTGTTG+GGG | - | chr8_4:50520474-50520493 | None:intergenic | 50.0% | |
| GGATACCCCCATGAGTTGTT+GGG | - | chr8_4:50520475-50520494 | None:intergenic | 50.0% | |
| TGGATACCCCCATGAGTTGT+TGG | - | chr8_4:50520476-50520495 | None:intergenic | 50.0% | |
| ACCCAAATCGGAGGTTTAGG+TGG | + | chr8_4:50520614-50520633 | Msa1331110:CDS | 50.0% | |
| CTCCACCTAAACCTCCGATT+TGG | - | chr8_4:50520619-50520638 | None:intergenic | 50.0% | |
| GCTAATGGCACCTCCTTCAA+TGG | - | chr8_4:50520759-50520778 | None:intergenic | 50.0% | |
| CATCCCCTAGTGAGCATTTG+TGG | + | chr8_4:50520904-50520923 | Msa1331110:CDS | 50.0% | |
| ACACATGCCTTGCAGAGTTC+AGG | + | chr8_4:50521547-50521566 | Msa1331110:CDS | 50.0% | |
| ATCCACTCCTGAACTCTGCA+AGG | - | chr8_4:50521557-50521576 | None:intergenic | 50.0% | |
| ! | GCATTGGTATGTCTGGTCTG+AGG | - | chr8_4:50521630-50521649 | None:intergenic | 50.0% |
| ! | ATTTTGTTGGGGGGAGCCTA+AGG | - | chr8_4:50522067-50522086 | None:intergenic | 50.0% |
| ! | GCTATCACAATGAGGGTGTG+AGG | - | chr8_4:50522292-50522311 | None:intergenic | 50.0% |
| TTGGGATTGTCTGGCGGCTT+TGG | + | chr8_4:50519621-50519640 | Msa1331110:intron | 55.0% | |
| CAATCTCGTGGCGCAAATGG+TGG | + | chr8_4:50520386-50520405 | Msa1331110:CDS | 55.0% | |
| CCCATGAGTTGTTGGGGAGA+TGG | - | chr8_4:50520468-50520487 | None:intergenic | 55.0% | |
| GGAGATGTGGCAGGTGATTG+TGG | + | chr8_4:50520936-50520955 | Msa1331110:intron | 55.0% | |
| TGCCTTGCAGAGTTCAGGAG+TGG | + | chr8_4:50521552-50521571 | Msa1331110:CDS | 55.0% | |
| CTGGGGTTGGGATTGTCTGG+CGG | + | chr8_4:50519615-50519634 | Msa1331110:intron | 60.0% | |
| !! | CGCTCTGGCTCTAGAGTCAC+TGG | + | chr8_4:50521830-50521849 | Msa1331110:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 50518563 | 50522377 | 50518563 | ID=Msa1331110;Name=Msa1331110 |
| chr8_4 | mRNA | 50518563 | 50522377 | 50518563 | ID=Msa1331110-mRNA-1;Parent=Msa1331110;Name=Msa1331110-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.42|0.37|0.87|1|1|8|473|368 |
| chr8_4 | exon | 50518563 | 50518611 | 50518563 | ID=Msa1331110-mRNA-1:exon:14757;Parent=Msa1331110-mRNA-1 |
| chr8_4 | exon | 50519129 | 50519237 | 50519129 | ID=Msa1331110-mRNA-1:exon:14758;Parent=Msa1331110-mRNA-1 |
| chr8_4 | exon | 50519750 | 50519819 | 50519750 | ID=Msa1331110-mRNA-1:exon:14759;Parent=Msa1331110-mRNA-1 |
| chr8_4 | exon | 50519902 | 50519997 | 50519902 | ID=Msa1331110-mRNA-1:exon:14760;Parent=Msa1331110-mRNA-1 |
| chr8_4 | exon | 50520356 | 50520801 | 50520356 | ID=Msa1331110-mRNA-1:exon:14761;Parent=Msa1331110-mRNA-1 |
| chr8_4 | exon | 50520881 | 50520948 | 50520881 | ID=Msa1331110-mRNA-1:exon:14762;Parent=Msa1331110-mRNA-1 |
| chr8_4 | exon | 50521509 | 50521666 | 50521509 | ID=Msa1331110-mRNA-1:exon:14763;Parent=Msa1331110-mRNA-1 |
| chr8_4 | exon | 50521794 | 50522377 | 50521794 | ID=Msa1331110-mRNA-1:exon:14764;Parent=Msa1331110-mRNA-1 |
| chr8_4 | CDS | 50518563 | 50518611 | 50518563 | ID=Msa1331110-mRNA-1:cds;Parent=Msa1331110-mRNA-1 |
| chr8_4 | CDS | 50519129 | 50519237 | 50519129 | ID=Msa1331110-mRNA-1:cds;Parent=Msa1331110-mRNA-1 |
| chr8_4 | CDS | 50519750 | 50519819 | 50519750 | ID=Msa1331110-mRNA-1:cds;Parent=Msa1331110-mRNA-1 |
| chr8_4 | CDS | 50519902 | 50519997 | 50519902 | ID=Msa1331110-mRNA-1:cds;Parent=Msa1331110-mRNA-1 |
| chr8_4 | CDS | 50520356 | 50520801 | 50520356 | ID=Msa1331110-mRNA-1:cds;Parent=Msa1331110-mRNA-1 |
| chr8_4 | CDS | 50520881 | 50520948 | 50520881 | ID=Msa1331110-mRNA-1:cds;Parent=Msa1331110-mRNA-1 |
| chr8_4 | CDS | 50521509 | 50521666 | 50521509 | ID=Msa1331110-mRNA-1:cds;Parent=Msa1331110-mRNA-1 |
| chr8_4 | CDS | 50521794 | 50521904 | 50521794 | ID=Msa1331110-mRNA-1:cds;Parent=Msa1331110-mRNA-1 |
| chr8_4 | three_prime_UTR | 50521905 | 50522377 | 50521905 | ID=Msa1331110-mRNA-1:three_prime_utr;Parent=Msa1331110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
