AlfalfaGEDB | Msa1215910

M. sativa cultivar zhongmu-4 / Msa1215910

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1215910	G7JHU0	87.156	109	14	0	1	109	1	109	2.44e-58	184

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005350	Msa1215910	0.809325	2.000628e-50	-8.615850e-47
Msa0053900	Msa1215910	0.814161	1.774101e-51	-8.615850e-47
Msa0120340	Msa1215910	0.800942	1.137235e-48	-8.615850e-47
Msa0148360	Msa1215910	0.809276	2.049674e-50	-8.615850e-47
Msa0328210	Msa1215910	0.802426	5.643257e-49	-8.615850e-47
Msa0426330	Msa1215910	0.808731	2.681337e-50	-8.615850e-47
Msa0697400	Msa1215910	0.801148	1.032351e-48	-8.615850e-47
Msa0748720	Msa1215910	0.995073	9.010444e-213	-8.615850e-47
Msa0899230	Msa1215910	0.801739	7.810342e-49	-8.615850e-47
Msa0993530	Msa1215910	0.805076	1.589864e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1215910	MtrunA17_Chr4g0065281	87.156	109	14	0	1	109	4	112	5.64e-62	184
Msa1215910	MtrunA17_Chr2g0305061	40.741	108	54	4	1	107	1	99	1.75e-19	77.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1215910	AT2G46490.1	45.588	68	30	2	4	64	2	69	2.24e-15	67.4

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Find 25 sgRNAs with CRISPR-Local

Find 23 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTCAAGAGCAGGAGG+AGG	0.580819	8_1:-77371749	Msa1215910:CDS
ACAATCCTGTTACAACAACT+TGG	0.566427	8_1:+77371889	None:intergenic
ACTGGAGAAGAAGAATCAGT+TGG	0.591197	8_1:+77371787	None:intergenic
AGACCTTACCACCGTAAATG+TGG	0.625137	8_1:-77371961	Msa1215910:CDS
AGGAGGAGGAGATTGATTCA+AGG	0.527577	8_1:-77371735	Msa1215910:CDS
ATATATGATATGGCCACTGC+TGG	0.465999	8_1:-77372048	None:intergenic
ATCCTATCAAGAAACAACGT+AGG	0.723502	8_1:-77371861	Msa1215910:CDS
CAACCACATTTACGGTGGTA+AGG	0.548420	8_1:+77371958	None:intergenic
CAAGAAACAACGTAGGAGTT+TGG	0.397063	8_1:-77371854	Msa1215910:CDS
CTCCTACGTTGTTTCTTGAT+AGG	0.341022	8_1:+77371859	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTACCAAACTGATCATTAC+TGG	+	chr8_1:77371993-77372012	None:intergenic	30.0%
TTGTTCTGGTCATTGTATGA+AGG	-	chr8_1:77371741-77371760	Msa1215910:CDS	35.0%
GAAGTACACAACCACATTTA+CGG	+	chr8_1:77371812-77371831	None:intergenic	35.0%
TGTTACCAAGTTGTTGTAAC+AGG	-	chr8_1:77371865-77371884	Msa1215910:CDS	35.0%
ACAATCCTGTTACAACAACT+TGG	+	chr8_1:77371873-77371892	None:intergenic	35.0%
ATCCTATCAAGAAACAACGT+AGG	-	chr8_1:77371898-77371917	Msa1215910:CDS	35.0%
TTCTCCAGTAATGATCAGTT+TGG	-	chr8_1:77371986-77372005	Msa1215910:CDS	35.0%
CAAGAAACAACGTAGGAGTT+TGG	-	chr8_1:77371905-77371924	Msa1215910:CDS	40.0%
ACTGGAGAAGAAGAATCAGT+TGG	+	chr8_1:77371975-77371994	None:intergenic	40.0%
TTTGGTAAACCTTCAAGAGC+AGG	-	chr8_1:77372004-77372023	Msa1215910:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	77371720	77372061	77371720	ID=Msa1215910;Name=Msa1215910
chr8_1	mRNA	77371720	77372061	77371720	ID=Msa1215910-mRNA-1;Parent=Msa1215910;Name=Msa1215910-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|113
chr8_1	exon	77371720	77372061	77371720	ID=Msa1215910-mRNA-1:exon:26687;Parent=Msa1215910-mRNA-1
chr8_1	CDS	77371720	77372061	77371720	ID=Msa1215910-mRNA-1:cds;Parent=Msa1215910-mRNA-1

Gene Sequence	>Msa1215910 ATGGCCACTGCTGGAGATGGATTGTTCTGGTCATTGTATGAAGGAAGCATCTCTGGCTACGACAATACTTTTGAAAAGAGACCTTACCACCGTAAATGTGGTTGTGTACTTCATAATAAAAAGTCACGTATGAACTACAACCACATGTTACCAAGTTGTTGTAACAGGATTGTGTCTTATCCTATCAAGAAACAACGTAGGAGTTTGGTCATGAAAACAGCTTCAACTGCTCTTTCTTCTTCTTTTTCTTTTCCAACTGATTCTTCTTCTCCAGTAATGATCAGTTTGGTAAACCTTCAAGAGCAGGAGGAGGAGATTGATTCAAGGTCTGAGGAGAATTAA
Protein sequence	>Msa1215910 MATAGDGLFWSLYEGSISGYDNTFEKRPYHRKCGCVLHNKKSRMNYNHMLPSCCNRIVSYPIKKQRRSLVMKTASTALSSSFSFPTDSSSPVMISLVNLQEQEEEIDSRSEEN*