AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0899230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0899230 MtrunA17_Chr6g0485111 98.010 402 3 1 1 397 1 402 0.0 806
Msa0899230 MtrunA17_Chr8g0390691 73.134 402 98 4 1 397 1 397 0.0 580
Msa0899230 MtrunA17_Chr1g0169271 47.606 376 186 6 28 396 43 414 9.33e-115 341
Msa0899230 MtrunA17_Chr2g0287641 29.703 404 249 8 16 393 13 407 8.09e-55 186
Msa0899230 MtrunA17_Chr7g0237091 32.723 382 230 10 36 393 31 409 1.03e-48 170
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0899230 AT3G24460.2 64.179 402 132 4 6 397 8 407 0.0 536
Msa0899230 AT3G24460.1 64.179 402 132 4 6 397 8 407 0.0 536
Msa0899230 AT4G13345.1 65.823 395 127 3 5 394 2 393 0.0 526
Msa0899230 AT4G13345.2 65.823 395 127 4 5 394 2 393 0.0 524
Msa0899230 AT4G13345.6 65.823 395 127 4 5 394 2 393 0.0 524
Msa0899230 AT4G13345.4 65.789 380 122 3 5 379 2 378 3.06e-179 504
Msa0899230 AT4G13345.5 64.607 356 118 4 5 355 2 354 7.88e-162 459
Msa0899230 AT4G13345.3 61.111 288 105 2 17 299 14 299 4.38e-118 345
Msa0899230 AT4G13345.7 61.111 288 105 2 17 299 14 299 4.38e-118 345
Msa0899230 AT2G33205.1 48.541 377 183 6 27 396 40 412 1.66e-115 343
Msa0899230 AT2G33205.8 47.884 378 186 6 27 396 40 414 3.04e-114 340
Msa0899230 AT2G33205.5 47.884 378 186 6 27 396 40 414 3.04e-114 340
Msa0899230 AT2G33205.9 47.368 361 179 6 27 379 40 397 9.56e-108 323
Msa0899230 AT2G33205.2 48.571 315 154 4 88 395 5 318 6.78e-98 295
Msa0899230 AT2G33205.7 49.671 304 145 4 99 395 1 303 4.62e-96 290
Msa0899230 AT2G33205.6 45.697 337 172 6 27 355 40 373 2.23e-92 283
Msa0899230 AT2G33205.3 43.299 291 155 5 27 310 40 327 2.30e-69 222
Msa0899230 AT2G33205.4 43.299 291 155 5 27 310 40 327 2.30e-69 222
Msa0899230 AT3G06170.1 30.713 407 240 10 16 393 14 407 1.88e-48 169
Msa0899230 AT1G16180.2 31.266 387 231 9 36 393 31 411 3.60e-44 158
Msa0899230 AT1G16180.1 31.266 387 231 9 36 393 31 411 3.60e-44 158

Find 99 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAGATTCTAAATGCTTTC+AGG 0.153702 6_1:+94127342 Msa0899230:CDS
GCAGGAGAAGTTGCACATTT+TGG 0.197851 6_1:+94124921 Msa0899230:intron
ACTATCTGATAGATCAAAAT+TGG 0.241729 6_1:-94128574 None:intergenic
TGTTGGCAGAGCTTTGTTAT+TGG 0.269454 6_1:+94127283 Msa0899230:intron
CTGATGCATTGATCTCCTTC+TGG 0.269494 6_1:-94126531 None:intergenic
TTATGCTTACTAGTTGAATT+AGG 0.274629 6_1:-94125052 None:intergenic
AGCAATTTAGTCTATGATAT+TGG 0.274697 6_1:+94121407 Msa0899230:five_prime_UTR
TCTGAATTGATTGATCTCTA+TGG 0.290027 6_1:+94124626 Msa0899230:CDS
TTTCTCTTGTTTCTCTCAAT+TGG 0.293298 6_1:+94121346 Msa0899230:five_prime_UTR
GAGATACGCTTGTCATGATT+TGG 0.303110 6_1:-94125637 None:intergenic
TATATGTTGTCTTCCTTTGT+TGG 0.308105 6_1:+94125830 Msa0899230:CDS
CCAAGAGATACATGGCATTC+TGG 0.323171 6_1:+94124542 Msa0899230:CDS
AGGATATATGAACATGTAAA+TGG 0.325827 6_1:-94128714 None:intergenic
CCTTGAAAGGGATAACAATA+TGG 0.333198 6_1:+94121121 None:intergenic
CAAATACCATCACATGGATT+TGG 0.338082 6_1:-94125499 None:intergenic
GATGATGTTCCATATGGATA+TGG 0.339974 6_1:+94127482 Msa0899230:CDS
TTACATAGTACGAGCATAAT+GGG 0.341580 6_1:-94128542 None:intergenic
CAAAGTTGGAAAAGACTGTT+TGG 0.346464 6_1:+94124150 Msa0899230:CDS
CCTTTAGTCCACAACCTTGT+TGG 0.356113 6_1:-94123798 None:intergenic
TATTTCTGTGTACCATCCTT+TGG 0.358026 6_1:-94128687 None:intergenic
TTGATGGCAAGATATGTCTA+TGG 0.370296 6_1:+94123862 Msa0899230:CDS
TACTTTGCAATGCTATTGAT+TGG 0.370812 6_1:+94127539 Msa0899230:CDS
ATGAAGCATATAAGCTTATA+CGG 0.380266 6_1:+94121164 Msa0899230:five_prime_UTR
AAATGCATCAAATCCTTTGA+TGG 0.383037 6_1:+94123846 Msa0899230:CDS
TTAATGTTGTTGCTTTCTCT+TGG 0.384289 6_1:-94123769 None:intergenic
GGGCAACCAAGATTGTTCTA+TGG 0.386886 6_1:+94124570 Msa0899230:CDS
GCATAATCAGCTTCATTACT+TGG 0.389215 6_1:+94125069 Msa0899230:CDS
CGTTACTTACAATCATTAGA+TGG 0.393097 6_1:+94128741 Msa0899230:three_prime_UTR
TGGGTTCTTGTAGAAGTCTA+TGG 0.393716 6_1:+94128815 Msa0899230:three_prime_UTR
ATTACATAGTACGAGCATAA+TGG 0.396295 6_1:-94128543 None:intergenic
ATGTGGGCTGGACCAGTGCT+TGG 0.396466 6_1:+94127968 Msa0899230:CDS
ATTTATCAGTTCAATGCATT+GGG 0.400158 6_1:+94128796 Msa0899230:three_prime_UTR
TGTCTTGCCTTCCATACAAT+TGG 0.400690 6_1:-94128488 None:intergenic
AATTTATCAGTTCAATGCAT+TGG 0.413494 6_1:+94128795 Msa0899230:three_prime_UTR
GTGGACTAAAGGATTCTTCA+TGG 0.420163 6_1:+94123809 Msa0899230:CDS
CATGTGATGGTATTTGCAAC+AGG 0.432557 6_1:+94125506 Msa0899230:CDS
GGAACATCATCTTCTTCTGC+TGG 0.439187 6_1:-94127470 None:intergenic
TGAATAGTGTGTAACATTAG+TGG 0.445733 6_1:+94123731 Msa0899230:five_prime_UTR
TTTACATGTTCATATATCCT+TGG 0.449738 6_1:+94128717 Msa0899230:three_prime_UTR
CTGCAGATGGTCACTTGATG+TGG 0.452717 6_1:+94127951 Msa0899230:intron
TATAATCCATAGAACAATCT+TGG 0.456766 6_1:-94124576 None:intergenic
ACATATAGCCCCATCAATCC+TGG 0.458090 6_1:-94125814 None:intergenic
TAGCTGCTAATATGTTGGCA+TGG 0.464913 6_1:+94123896 Msa0899230:CDS
GAAGAAGATGATGTTCCATA+TGG 0.466677 6_1:+94127476 Msa0899230:CDS
TGCTGATAGCTCCAATTGTA+TGG 0.471218 6_1:+94128477 Msa0899230:CDS
GTAATTTCAACAATAAGAAT+AGG 0.472061 6_1:-94128853 None:intergenic
CCAACAAGGTTGTGGACTAA+AGG 0.475753 6_1:+94123798 Msa0899230:CDS
GATCAATGCATCAGAACATC+AGG 0.477126 6_1:+94126540 Msa0899230:CDS
TTGCAATGCTATTGATTGGA+TGG 0.487844 6_1:+94127543 Msa0899230:CDS
AGAATAGAAGATCTTCTTAG+TGG 0.490986 6_1:+94123663 Msa0899230:five_prime_UTR
CCAGAATGCCATGTATCTCT+TGG 0.491441 6_1:-94124542 None:intergenic
CTATTCAAGTATATGATCAA+TGG 0.495256 6_1:-94123715 None:intergenic
ATTATGCTCGTACTATGTAA+TGG 0.495790 6_1:+94128545 Msa0899230:three_prime_UTR
GATGGTCACTTGATGTGGGC+TGG 0.502453 6_1:+94127956 Msa0899230:intron
TGTGGGCTGGACCAGTGCTT+GGG 0.503046 6_1:+94127969 Msa0899230:CDS
TACTATTCTGACCCAAGCAC+TGG 0.503124 6_1:-94127980 None:intergenic
CATTAATTTGCAGCTAAGGA+AGG 0.506153 6_1:+94127439 Msa0899230:intron
CATTTGTGCTAGAATCCAAT+TGG 0.512599 6_1:-94128614 None:intergenic
TCTGTGTACCATCCTTTGGA+TGG 0.517292 6_1:-94128683 None:intergenic
TGCAGATGGTCACTTGATGT+GGG 0.517995 6_1:+94127952 Msa0899230:intron
CAGAATAGTAAATGAATGGT+TGG 0.523254 6_1:+94127993 Msa0899230:CDS
AGTGAAGAAATTAAAAGAGA+AGG 0.524149 6_1:-94121238 None:intergenic
TGCTTACTAGTTGAATTAGG+AGG 0.533605 6_1:-94125049 None:intergenic
AAAGTTGGAAAAGACTGTTT+GGG 0.535404 6_1:+94124151 Msa0899230:CDS
TAGTGCATTGACTGAACTCA+AGG 0.537938 6_1:+94123945 Msa0899230:CDS
AATAGTAACCAACAAGGTTG+TGG 0.539024 6_1:+94123790 Msa0899230:CDS
TAGAGATCAATCAATTCAGA+AGG 0.539665 6_1:-94124623 None:intergenic
TTGAGGAGGCATGATGGTAT+TGG 0.539814 6_1:-94125581 None:intergenic
AGCTGCTAATATGTTGGCAT+GGG 0.541683 6_1:+94123897 Msa0899230:CDS
ATTAATTTGCAGCTAAGGAA+GGG 0.543167 6_1:+94127440 Msa0899230:intron
TTCTGATTGCACACCAACAA+AGG 0.551050 6_1:-94125843 None:intergenic
GGGTCAGAATAGTAAATGAA+TGG 0.552152 6_1:+94127989 Msa0899230:CDS
TACATGGCATTCTGGATGGT+GGG 0.553354 6_1:+94124550 Msa0899230:CDS
AGAAATTAAAAGAGAAGGAG+TGG 0.558708 6_1:-94121233 None:intergenic
TAGACATATCTTGCCATCAA+AGG 0.559648 6_1:-94123859 None:intergenic
GATAGCTCCAATTGTATGGA+AGG 0.571406 6_1:+94128481 Msa0899230:CDS
AAAATGTTGAGGAGGCATGA+TGG 0.587527 6_1:-94125587 None:intergenic
GAGATACATGGCATTCTGGA+TGG 0.589052 6_1:+94124546 Msa0899230:CDS
CTCTCATTCCATCCAAAGGA+TGG 0.589491 6_1:+94128675 Msa0899230:three_prime_UTR
TTGTGTCAATAGGTAAATGG+TGG 0.592494 6_1:+94125781 Msa0899230:intron
CATCCTTTGGATGGAATGAG+AGG 0.592659 6_1:-94128674 None:intergenic
CTGTTGCAAATACCATCACA+TGG 0.597757 6_1:-94125505 None:intergenic
AGAAGATCTTCTTAGTGGAG+TGG 0.604451 6_1:+94123668 Msa0899230:five_prime_UTR
AATTAAAAGAGAAGGAGTGG+TGG 0.612518 6_1:-94121230 None:intergenic
ACTCCTCTCATTCCATCCAA+AGG 0.616042 6_1:+94128671 Msa0899230:three_prime_UTR
ATACATGGCATTCTGGATGG+TGG 0.619650 6_1:+94124549 Msa0899230:CDS
TGAATGAACCAAGAGATACA+TGG 0.628217 6_1:+94124534 Msa0899230:CDS
ATGATTGTAAGTAACGTCCA+AGG 0.630967 6_1:-94128734 None:intergenic
GTGCAGCCAAATCCATGTGA+TGG 0.636534 6_1:+94125493 Msa0899230:intron
TGCAAAGTACATAGCTCCTG+TGG 0.637719 6_1:-94127525 None:intergenic
GCACTGTAACCAAAACAGAC+TGG 0.637874 6_1:+94126562 Msa0899230:CDS
AGTGCATTGACTGAACTCAA+GGG 0.641155 6_1:+94123946 Msa0899230:CDS
TGTGCATGCAGTGAACCAGA+AGG 0.646240 6_1:+94126516 Msa0899230:intron
AGAGATCAATCAATTCAGAA+GGG 0.664107 6_1:-94124622 None:intergenic
AAAGGGATAACAATATGGAG+AGG 0.664934 6_1:+94121126 None:intergenic
AAAGACTGTTTGGGAGCACA+TGG 0.665233 6_1:+94124160 Msa0899230:CDS
TATTGGATTAACATATACAA+AGG 0.674358 6_1:+94121424 Msa0899230:five_prime_UTR
TACATAGTACGAGCATAATG+GGG 0.690913 6_1:-94128541 None:intergenic
AACATTAATAGTAACCAACA+AGG 0.715322 6_1:+94123784 Msa0899230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAACAAAACAAAATT+TGG + chr6_1:94121922-94121941 Msa0899230:intron 10.0%
!!! TTTTTCAATAAAAAATGAAA+AGG - chr6_1:94122356-94122375 None:intergenic 10.0%
!!! CTTCTTTTTAAATTAAATTA+TGG + chr6_1:94122650-94122669 Msa0899230:intron 10.0%
!!! TCTCTTTAAAAAATATTTAA+TGG - chr6_1:94122705-94122724 None:intergenic 10.0%
!! ATTGTAAAAAAAAGATATTT+AGG - chr6_1:94122816-94122835 None:intergenic 10.0%
!!! TTATTTATTTATTTTGTGAA+AGG + chr6_1:94123509-94123528 Msa0899230:intron 10.0%
!!! CTCTATTATATATTTAAAAT+AGG + chr6_1:94124834-94124853 Msa0899230:intron 10.0%
!!! TGACATAATTAATTTTTTTT+GGG + chr6_1:94124899-94124918 Msa0899230:intron 10.0%
!! AAATTTAAAAATGCAAAAAA+AGG - chr6_1:94125879-94125898 None:intergenic 10.0%
!! ATATTCAATAGAAATAAAAA+GGG - chr6_1:94126479-94126498 None:intergenic 10.0%
!! TATATTCAATAGAAATAAAA+AGG - chr6_1:94126480-94126499 None:intergenic 10.0%
!!! GTATGAATTTTTTAATTTAT+TGG - chr6_1:94126911-94126930 None:intergenic 10.0%
!! ATAAAATATGTGTTTATGAA+AGG - chr6_1:94121494-94121513 None:intergenic 15.0%
!!! TTTTATCAATCTTTTATTGA+TGG + chr6_1:94122257-94122276 Msa0899230:intron 15.0%
!!! CTTTTTTAATTTTCAATTGT+TGG - chr6_1:94122457-94122476 None:intergenic 15.0%
!! ATTGAAATTTAATTCGATAA+AGG - chr6_1:94124218-94124237 None:intergenic 15.0%
!! TTTATAGTAAAAAAATTGCA+TGG + chr6_1:94124260-94124279 Msa0899230:intron 15.0%
!! TTATAGTAAAAAAATTGCAT+GGG + chr6_1:94124261-94124280 Msa0899230:intron 15.0%
!!! TATTTTTTATGATGATGTTT+TGG + chr6_1:94124489-94124508 Msa0899230:CDS 15.0%
!! CAAATATAGAGATTAATAAT+TGG - chr6_1:94124684-94124703 None:intergenic 15.0%
!! AAAAAAATTAATTATGTCAG+AGG - chr6_1:94124898-94124917 None:intergenic 15.0%
!!! CTGACATAATTAATTTTTTT+TGG + chr6_1:94124898-94124917 Msa0899230:intron 15.0%
!!! AATTATTGTCTATATTTTTC+AGG + chr6_1:94125021-94125040 Msa0899230:intron 15.0%
!!! ATTATTGTCTATATTTTTCA+GGG + chr6_1:94125022-94125041 Msa0899230:intron 15.0%
!!! TAAGAGTATTTTTATAAGAA+AGG - chr6_1:94125204-94125223 None:intergenic 15.0%
!!! CTTAAATAAAACATACTTTT+GGG - chr6_1:94125667-94125686 None:intergenic 15.0%
!!! TCTTAAATAAAACATACTTT+TGG - chr6_1:94125668-94125687 None:intergenic 15.0%
!!! AAAATTGGTTTTGATTAAAT+TGG + chr6_1:94125955-94125974 Msa0899230:intron 15.0%
!!! ATTTTTATCGATTTATGTTA+GGG + chr6_1:94126022-94126041 Msa0899230:intron 15.0%
!!! TTTTCATATTAAAAATGTCT+CGG + chr6_1:94126295-94126314 Msa0899230:intron 15.0%
!!! TTATGTTTGTTTATGTATTT+TGG + chr6_1:94126665-94126684 Msa0899230:intron 15.0%
!!! TAAGTTTTTTTTCCTTTTTT+CGG + chr6_1:94128032-94128051 Msa0899230:intron 15.0%
!!! TTCATTTTTTAAACTACTAT+TGG + chr6_1:94128348-94128367 Msa0899230:intron 15.0%
!! TATTGGATTAACATATACAA+AGG + chr6_1:94121424-94121443 Msa0899230:five_prime_UTR 20.0%
!! TAAACATATGAAAAAACATG+AGG - chr6_1:94121588-94121607 None:intergenic 20.0%
!! AAAATGAGAGAAAATGTTTA+AGG - chr6_1:94121620-94121639 None:intergenic 20.0%
!!! TATGTCATTTTGTTTTTGAA+TGG + chr6_1:94121748-94121767 Msa0899230:intron 20.0%
!! AAGATTAATGACATAAAAAC+AGG - chr6_1:94121774-94121793 None:intergenic 20.0%
!!! GTTTTTATGTCATTAATCTT+TGG + chr6_1:94121774-94121793 Msa0899230:intron 20.0%
!! CAAACTAATAATTCAAAGAA+TGG - chr6_1:94121850-94121869 None:intergenic 20.0%
!!! TTACTTTACTTTATTTTCCA+GGG - chr6_1:94122327-94122346 None:intergenic 20.0%
!!! ATTACTTTACTTTATTTTCC+AGG - chr6_1:94122328-94122347 None:intergenic 20.0%
!!! TTTTAATTTTCAATTGTTGG+AGG - chr6_1:94122454-94122473 None:intergenic 20.0%
!!! GTTTTTTCTTTCTTATTTTG+AGG + chr6_1:94122549-94122568 Msa0899230:intron 20.0%
!!! TTTAAAGACAAATTTTGTTG+AGG + chr6_1:94122782-94122801 Msa0899230:intron 20.0%
!!! GTTTTAGAAATTTTTTTGAG+AGG + chr6_1:94122924-94122943 Msa0899230:intron 20.0%
!!! TGTTCTATGGAATTTTATTT+TGG + chr6_1:94123117-94123136 Msa0899230:intron 20.0%
!!! GTTCTATGGAATTTTATTTT+GGG + chr6_1:94123118-94123137 Msa0899230:intron 20.0%
!!! TTCTATGGAATTTTATTTTG+GGG + chr6_1:94123119-94123138 Msa0899230:intron 20.0%
!! AAGAAGAAAAAATCTATGAT+GGG + chr6_1:94123288-94123307 Msa0899230:intron 20.0%
!! TTCAGTTGAATTTCTAAATT+AGG + chr6_1:94123431-94123450 Msa0899230:intron 20.0%
!! TCAGTTGAATTTCTAAATTA+GGG + chr6_1:94123432-94123451 Msa0899230:intron 20.0%
!! ATAAATAAACAACTACTAGA+TGG - chr6_1:94123497-94123516 None:intergenic 20.0%
!!! TAACGAATTTTCCATAAAAT+TGG + chr6_1:94123599-94123618 Msa0899230:intron 20.0%
!! AATTTATCAATTGACTATAG+AGG - chr6_1:94124041-94124060 None:intergenic 20.0%
!! TCTAACAAATATTGAATTAC+AGG + chr6_1:94124115-94124134 Msa0899230:intron 20.0%
!! AAATAGCTAATCAAGAATTA+AGG - chr6_1:94124474-94124493 None:intergenic 20.0%
!!! ATAATTAATTTTTTTTGGGC+AGG + chr6_1:94124903-94124922 Msa0899230:intron 20.0%
!!! CTTTTTTTTTTTGTGTCAAT+AGG + chr6_1:94125771-94125790 Msa0899230:intron 20.0%
!!! GATTTTTATCGATTTATGTT+AGG + chr6_1:94126021-94126040 Msa0899230:intron 20.0%
!!! TTTTAGTAGAATTGACTTTA+GGG + chr6_1:94126075-94126094 Msa0899230:intron 20.0%
!! ACTTTCGAAAATCAAATTTA+AGG - chr6_1:94126164-94126183 None:intergenic 20.0%
!! TTTCATATTAAAAATGTCTC+GGG + chr6_1:94126296-94126315 Msa0899230:intron 20.0%
!!! ACATATTTTTCTAACTAGTT+TGG + chr6_1:94126705-94126724 Msa0899230:intron 20.0%
!! TCATTGGAAACATATTTATT+GGG - chr6_1:94127715-94127734 None:intergenic 20.0%
!! TTCATTGGAAACATATTTAT+TGG - chr6_1:94127716-94127735 None:intergenic 20.0%
!!! AAGAACAGCTATAAATTTTT+TGG + chr6_1:94127918-94127937 Msa0899230:intron 20.0%
!!! TTCTTATCATTTTTACAGTA+TGG + chr6_1:94128453-94128472 Msa0899230:intron 20.0%
!! GTAATTTCAACAATAAGAAT+AGG - chr6_1:94128856-94128875 None:intergenic 20.0%
! ATGAAGCATATAAGCTTATA+CGG + chr6_1:94121164-94121183 Msa0899230:five_prime_UTR 25.0%
! AGTGAAGAAATTAAAAGAGA+AGG - chr6_1:94121241-94121260 None:intergenic 25.0%
! AGCAATTTAGTCTATGATAT+TGG + chr6_1:94121407-94121426 Msa0899230:five_prime_UTR 25.0%
! ATTCATTCTCATAAGAAACA+TGG - chr6_1:94121549-94121568 None:intergenic 25.0%
! TTCAAAGAATGGTGAATATA+TGG - chr6_1:94121839-94121858 None:intergenic 25.0%
! ACATATATGAACATGTTTGA+TGG + chr6_1:94121894-94121913 Msa0899230:intron 25.0%
! CATATATGAACATGTTTGAT+GGG + chr6_1:94121895-94121914 Msa0899230:intron 25.0%
!!! CTATGTTTACTTTTGTTGAA+GGG - chr6_1:94122115-94122134 None:intergenic 25.0%
!!! ACTCTACTTTTGTCTAAAAA+TGG - chr6_1:94122525-94122544 None:intergenic 25.0%
! AAGAAAAAATTGATCTGGTT+TGG - chr6_1:94123003-94123022 None:intergenic 25.0%
!!! ACCAGATCAATTTTTTCTTT+AGG + chr6_1:94123004-94123023 Msa0899230:intron 25.0%
! TCCTAAAGAAAAAATTGATC+TGG - chr6_1:94123008-94123027 None:intergenic 25.0%
! ATTCTAAATACCAACCTTTA+AGG - chr6_1:94123222-94123241 None:intergenic 25.0%
!!! AAGGTTGGTATTTAGAATTT+TGG + chr6_1:94123224-94123243 Msa0899230:intron 25.0%
!!! TTTTTTCTTCTTCTCTCTTT+TGG - chr6_1:94123280-94123299 None:intergenic 25.0%
! GAAGAAGAAAAAATCTATGA+TGG + chr6_1:94123287-94123306 Msa0899230:intron 25.0%
! TGTAGTACAATTTACAATAC+AGG + chr6_1:94123634-94123653 Msa0899230:intron 25.0%
! GTAGTACAATTTACAATACA+GGG + chr6_1:94123635-94123654 Msa0899230:intron 25.0%
! CTATTCAAGTATATGATCAA+TGG - chr6_1:94123718-94123737 None:intergenic 25.0%
! AACATTAATAGTAACCAACA+AGG + chr6_1:94123784-94123803 Msa0899230:CDS 25.0%
! TTTAGTTAGTGTGCTTAATT+TGG + chr6_1:94124003-94124022 Msa0899230:intron 25.0%
! ATGACAAGAATATACTATCA+TGG - chr6_1:94124080-94124099 None:intergenic 25.0%
! GTATTGTTATATACAGAGAT+CGG + chr6_1:94124342-94124361 Msa0899230:intron 25.0%
! TATAATCCATAGAACAATCT+TGG - chr6_1:94124579-94124598 None:intergenic 25.0%
! ATCAAACTAGATGTTTGAAT+CGG + chr6_1:94124723-94124742 Msa0899230:intron 25.0%
! TTATGCTTACTAGTTGAATT+AGG - chr6_1:94125055-94125074 None:intergenic 25.0%
!!! ACGATATGATGTGTTTTTAT+TGG - chr6_1:94125347-94125366 None:intergenic 25.0%
!!! GGATAATTTTGATGTACATT+TGG + chr6_1:94125552-94125571 Msa0899230:CDS 25.0%
! AAGTGATGAAAAAAATGTTG+AGG - chr6_1:94125601-94125620 None:intergenic 25.0%
!!! TCAACATTTTTTTCATCACT+TGG + chr6_1:94125600-94125619 Msa0899230:CDS 25.0%
! TCACATGAAAATCATATGAT+GGG - chr6_1:94125720-94125739 None:intergenic 25.0%
! TTCACATGAAAATCATATGA+TGG - chr6_1:94125721-94125740 None:intergenic 25.0%
! GAAAATTTCCCTAGAAAAAA+AGG - chr6_1:94125744-94125763 None:intergenic 25.0%
!! TTTTTGTGTCAATAGGTAAA+TGG + chr6_1:94125778-94125797 Msa0899230:intron 25.0%
! CATCACAAGTTAGAAATATT+AGG + chr6_1:94126052-94126071 Msa0899230:intron 25.0%
!!! GTTTTAGTAGAATTGACTTT+AGG + chr6_1:94126074-94126093 Msa0899230:intron 25.0%
! ATTATTATGATGTCACAAGA+TGG - chr6_1:94126777-94126796 None:intergenic 25.0%
! AAATTCATACAAACCAATTG+TGG + chr6_1:94126921-94126940 Msa0899230:intron 25.0%
! TCATTTACTATGTGATAAGA+TGG + chr6_1:94127076-94127095 Msa0899230:intron 25.0%
! CAAAAGACAAAAAGAAAACA+TGG - chr6_1:94127158-94127177 None:intergenic 25.0%
!!! ATATCATTAATTTGCAGCTA+AGG + chr6_1:94127435-94127454 Msa0899230:intron 25.0%
! TCAAAGAAAAGAAAAACAAG+TGG + chr6_1:94127649-94127668 Msa0899230:intron 25.0%
! CAAAGAAAAGAAAAACAAGT+GGG + chr6_1:94127650-94127669 Msa0899230:intron 25.0%
! TAATCTATTTAGCCTATGTT+AGG + chr6_1:94128099-94128118 Msa0899230:intron 25.0%
! TATCTTACAGAAAATCATGA+TGG - chr6_1:94128157-94128176 None:intergenic 25.0%
! AGAACAATAGATCTTATGAA+AGG - chr6_1:94128413-94128432 None:intergenic 25.0%
! ACTATCTGATAGATCAAAAT+TGG - chr6_1:94128577-94128596 None:intergenic 25.0%
!!! TAATTTTAGTCAGAACCAAT+TGG + chr6_1:94128599-94128618 Msa0899230:three_prime_UTR 25.0%
! AGGATATATGAACATGTAAA+TGG - chr6_1:94128717-94128736 None:intergenic 25.0%
! TTTACATGTTCATATATCCT+TGG + chr6_1:94128717-94128736 Msa0899230:three_prime_UTR 25.0%
! AATTTATCAGTTCAATGCAT+TGG + chr6_1:94128795-94128814 Msa0899230:three_prime_UTR 25.0%
! ATTTATCAGTTCAATGCATT+GGG + chr6_1:94128796-94128815 Msa0899230:three_prime_UTR 25.0%
AGAAATTAAAAGAGAAGGAG+TGG - chr6_1:94121236-94121255 None:intergenic 30.0%
! TTTCTCTTGTTTCTCTCAAT+TGG + chr6_1:94121346-94121365 Msa0899230:five_prime_UTR 30.0%
GAGAGAAAAAGAGAGATTAA+GGG + chr6_1:94121368-94121387 Msa0899230:five_prime_UTR 30.0%
! ACTTTTGTTGAAGGGTAAAT+AGG - chr6_1:94122107-94122126 None:intergenic 30.0%
!! CCTATGTTTACTTTTGTTGA+AGG - chr6_1:94122116-94122135 None:intergenic 30.0%
CCTTCAACAAAAGTAAACAT+AGG + chr6_1:94122113-94122132 Msa0899230:intron 30.0%
AAAACTCTTTAGCACTACAA+AGG + chr6_1:94122374-94122393 Msa0899230:intron 30.0%
TTTACCTTCTACAAGAAGAT+TGG - chr6_1:94123063-94123082 None:intergenic 30.0%
AAATTCCATAGAACATTCCT+TGG - chr6_1:94123112-94123131 None:intergenic 30.0%
!!! TATGGAATTTTATTTTGGGG+TGG + chr6_1:94123122-94123141 Msa0899230:intron 30.0%
!!! ATGGAATTTTATTTTGGGGT+GGG + chr6_1:94123123-94123142 Msa0899230:intron 30.0%
CATTAAGATTCCCTTCAATT+TGG - chr6_1:94123185-94123204 None:intergenic 30.0%
CTTCTAAATGATTCATGTGT+AGG - chr6_1:94123357-94123376 None:intergenic 30.0%
AATCAGAACTCTAACCTTAA+CGG + chr6_1:94123377-94123396 Msa0899230:intron 30.0%
! ATAAAAACTTGTTCCCGTTA+AGG - chr6_1:94123394-94123413 None:intergenic 30.0%
! GGGTTTCTTTTATCTGAAAA+CGG + chr6_1:94123452-94123471 Msa0899230:intron 30.0%
! TTTCTTTTATCTGAAAACGG+AGG + chr6_1:94123455-94123474 Msa0899230:intron 30.0%
! TTCTTTTATCTGAAAACGGA+GGG + chr6_1:94123456-94123475 Msa0899230:intron 30.0%
TGTGAAAGGAAAAAAGCTAA+TGG + chr6_1:94123523-94123542 Msa0899230:intron 30.0%
CTTCAACTATAAGCTTCAAT+TGG - chr6_1:94123578-94123597 None:intergenic 30.0%
! GAAAAGACTCACCAATTTTA+TGG - chr6_1:94123613-94123632 None:intergenic 30.0%
AGAATAGAAGATCTTCTTAG+TGG + chr6_1:94123663-94123682 Msa0899230:five_prime_UTR 30.0%
TGAATAGTGTGTAACATTAG+TGG + chr6_1:94123731-94123750 Msa0899230:five_prime_UTR 30.0%
ACATTAGTGGAAGAAAAAGA+TGG + chr6_1:94123744-94123763 Msa0899230:exon 30.0%
!! TTAATGTTGTTGCTTTCTCT+TGG - chr6_1:94123772-94123791 None:intergenic 30.0%
AAATGCATCAAATCCTTTGA+TGG + chr6_1:94123846-94123865 Msa0899230:CDS 30.0%
!!! TTTTCTAGCTGCTAATATGT+TGG + chr6_1:94123891-94123910 Msa0899230:CDS 30.0%
CAATTGACTATAGAGGATTT+AGG - chr6_1:94124034-94124053 None:intergenic 30.0%
AAAGTTGGAAAAGACTGTTT+GGG + chr6_1:94124151-94124170 Msa0899230:CDS 30.0%
TAATCTATTGACCATAAGTG+GGG - chr6_1:94124387-94124406 None:intergenic 30.0%
GTAATCTATTGACCATAAGT+GGG - chr6_1:94124388-94124407 None:intergenic 30.0%
AGTAATCTATTGACCATAAG+TGG - chr6_1:94124389-94124408 None:intergenic 30.0%
AAGCATTATATTAGCACTTG+TGG + chr6_1:94124421-94124440 Msa0899230:intron 30.0%
AGAGATCAATCAATTCAGAA+GGG - chr6_1:94124625-94124644 None:intergenic 30.0%
TAGAGATCAATCAATTCAGA+AGG - chr6_1:94124626-94124645 None:intergenic 30.0%
TCTGAATTGATTGATCTCTA+TGG + chr6_1:94124626-94124645 Msa0899230:CDS 30.0%
!! TTCAAATGCTTTGAAATCGT+CGG - chr6_1:94124761-94124780 None:intergenic 30.0%
CAGAAAAATATGCAGAAAGA+TGG + chr6_1:94125111-94125130 Msa0899230:CDS 30.0%
AAATATGCAGAAAGATGGTA+TGG + chr6_1:94125116-94125135 Msa0899230:intron 30.0%
!! GATGTGTTTTTATTGGATGT+CGG - chr6_1:94125340-94125359 None:intergenic 30.0%
! AGGTTCATATTTTATCTGCT+TGG + chr6_1:94125526-94125545 Msa0899230:CDS 30.0%
! TCATATTTTATCTGCTTGGT+TGG + chr6_1:94125530-94125549 Msa0899230:CDS 30.0%
! CATATTTTATCTGCTTGGTT+GGG + chr6_1:94125531-94125550 Msa0899230:CDS 30.0%
TGATGAAAAAAATGTTGAGG+AGG - chr6_1:94125598-94125617 None:intergenic 30.0%
! AAATCATATGATGGGAGAAA+AGG - chr6_1:94125712-94125731 None:intergenic 30.0%
!!! TCATGTGAACCTTTTTTTCT+AGG + chr6_1:94125732-94125751 Msa0899230:intron 30.0%
!!! CATGTGAACCTTTTTTTCTA+GGG + chr6_1:94125733-94125752 Msa0899230:intron 30.0%
!! ATTTTAAGTCCAGGATTGAT+GGG + chr6_1:94125805-94125824 Msa0899230:CDS 30.0%
TATATGTTGTCTTCCTTTGT+TGG + chr6_1:94125830-94125849 Msa0899230:CDS 30.0%
TTTAGCATGTATTTAGTGTG+CGG + chr6_1:94125927-94125946 Msa0899230:intron 30.0%
ACATAAGCTTAAAGTGTGTT+TGG + chr6_1:94126200-94126219 Msa0899230:intron 30.0%
AAAGATTCTAAGCATGTGTT+TGG - chr6_1:94126350-94126369 None:intergenic 30.0%
! CTTAGAATCTTTTCTCCAAA+AGG + chr6_1:94126358-94126377 Msa0899230:intron 30.0%
ATATGTTCTCAAGTAACAAG+AGG - chr6_1:94126691-94126710 None:intergenic 30.0%
TTAAGCAATGTTGTCAAAAC+TGG - chr6_1:94127055-94127074 None:intergenic 30.0%
! GTTATTGCAACATTTTCAAC+AGG + chr6_1:94127319-94127338 Msa0899230:CDS 30.0%
CATAGATTCTAAATGCTTTC+AGG + chr6_1:94127342-94127361 Msa0899230:CDS 30.0%
!! ATTAATTTGCAGCTAAGGAA+GGG + chr6_1:94127440-94127459 Msa0899230:intron 30.0%
TGGAAAAAACCATATCCATA+TGG - chr6_1:94127494-94127513 None:intergenic 30.0%
TACTTTGCAATGCTATTGAT+TGG + chr6_1:94127539-94127558 Msa0899230:CDS 30.0%
CATCATTCAATGAGAAAGTA+TGG + chr6_1:94127572-94127591 Msa0899230:intron 30.0%
TTCCATCTTGTTCATGTTAT+GGG + chr6_1:94127595-94127614 Msa0899230:intron 30.0%
ATATGTTTCCAATGAAGCTT+AGG + chr6_1:94127720-94127739 Msa0899230:intron 30.0%
CAGAATAGTAAATGAATGGT+TGG + chr6_1:94127993-94128012 Msa0899230:CDS 30.0%
ATCATATTGCTTCCGAAAAA+AGG - chr6_1:94128047-94128066 None:intergenic 30.0%
TTGTTCTAATGCACATCTAA+TGG + chr6_1:94128426-94128445 Msa0899230:intron 30.0%
TTACATAGTACGAGCATAAT+GGG - chr6_1:94128545-94128564 None:intergenic 30.0%
ATTACATAGTACGAGCATAA+TGG - chr6_1:94128546-94128565 None:intergenic 30.0%
ATTATGCTCGTACTATGTAA+TGG + chr6_1:94128545-94128564 Msa0899230:three_prime_UTR 30.0%
CGTTACTTACAATCATTAGA+TGG + chr6_1:94128741-94128760 Msa0899230:three_prime_UTR 30.0%
AATTAAAAGAGAAGGAGTGG+TGG - chr6_1:94121233-94121252 None:intergenic 35.0%
GGAGAGAAAAAGAGAGATTA+AGG + chr6_1:94121367-94121386 Msa0899230:five_prime_UTR 35.0%
TTGTTTCCTTTGTAGCTTTC+GGG - chr6_1:94122405-94122424 None:intergenic 35.0%
CTTGTTTCCTTTGTAGCTTT+CGG - chr6_1:94122406-94122425 None:intergenic 35.0%
TTACTCTATATAGTTGTGCG+TGG + chr6_1:94122747-94122766 Msa0899230:intron 35.0%
CATACCAATCTTCTTGTAGA+AGG + chr6_1:94123056-94123075 Msa0899230:intron 35.0%
!!! AATTTTATTTTGGGGTGGGA+GGG + chr6_1:94123127-94123146 Msa0899230:intron 35.0%
ACTACTACCATCCAAATTGA+AGG + chr6_1:94123171-94123190 Msa0899230:intron 35.0%
CTACTACCATCCAAATTGAA+GGG + chr6_1:94123172-94123191 Msa0899230:intron 35.0%
AAGATTCCCTTCAATTTGGA+TGG - chr6_1:94123181-94123200 None:intergenic 35.0%
TGAAGGGAATCTTAATGACA+TGG + chr6_1:94123188-94123207 Msa0899230:intron 35.0%
ATCAGAACTCTAACCTTAAC+GGG + chr6_1:94123378-94123397 Msa0899230:intron 35.0%
AATAGTAACCAACAAGGTTG+TGG + chr6_1:94123790-94123809 Msa0899230:CDS 35.0%
TAGACATATCTTGCCATCAA+AGG - chr6_1:94123862-94123881 None:intergenic 35.0%
! TTGATGGCAAGATATGTCTA+TGG + chr6_1:94123862-94123881 Msa0899230:CDS 35.0%
TGACTATAGAGGATTTAGGT+TGG - chr6_1:94124030-94124049 None:intergenic 35.0%
!!! GGTTTTAAAGCATGCAAAGT+TGG + chr6_1:94124136-94124155 Msa0899230:intron 35.0%
CAAAGTTGGAAAAGACTGTT+TGG + chr6_1:94124150-94124169 Msa0899230:CDS 35.0%
!!! TGATGTTTTGGTCAACTACA+AGG + chr6_1:94124501-94124520 Msa0899230:CDS 35.0%
TGAATGAACCAAGAGATACA+TGG + chr6_1:94124534-94124553 Msa0899230:CDS 35.0%
GCATTTGAACCATGACTTAA+AGG + chr6_1:94124772-94124791 Msa0899230:intron 35.0%
TGCTTACTAGTTGAATTAGG+AGG - chr6_1:94125052-94125071 None:intergenic 35.0%
GCATAATCAGCTTCATTACT+TGG + chr6_1:94125069-94125088 Msa0899230:CDS 35.0%
CAAATACCATCACATGGATT+TGG - chr6_1:94125502-94125521 None:intergenic 35.0%
TTGTGTCAATAGGTAAATGG+TGG + chr6_1:94125781-94125800 Msa0899230:intron 35.0%
!! CATTTTAAGTCCAGGATTGA+TGG + chr6_1:94125804-94125823 Msa0899230:CDS 35.0%
!! TTTTAAGTCCAGGATTGATG+GGG + chr6_1:94125806-94125825 Msa0899230:CDS 35.0%
TAGTGTGCGGTGATAAAAAT+TGG + chr6_1:94125940-94125959 Msa0899230:intron 35.0%
!! AGTAGAATTGACTTTAGGGT+TGG + chr6_1:94126079-94126098 Msa0899230:intron 35.0%
CAAAAATTTGATTGCGAACG+TGG + chr6_1:94126322-94126341 Msa0899230:intron 35.0%
! CTTTTCTCCAAAAGGAACTA+TGG + chr6_1:94126366-94126385 Msa0899230:intron 35.0%
! ATTGCATCCATAGTTCCTTT+TGG - chr6_1:94126376-94126395 None:intergenic 35.0%
TATAAGACATGATTGCATGC+AGG - chr6_1:94126414-94126433 None:intergenic 35.0%
ATTATGATGTCACAAGATGG+TGG - chr6_1:94126774-94126793 None:intergenic 35.0%
AACTTAACCAGAGAAGAAAC+CGG + chr6_1:94126824-94126843 Msa0899230:intron 35.0%
CATGGTTCAATTCGTCTAAT+CGG + chr6_1:94126861-94126880 Msa0899230:intron 35.0%
TTCGTCTAATCGGTTAAACT+AGG + chr6_1:94126871-94126890 Msa0899230:intron 35.0%
TCGTCTAATCGGTTAAACTA+GGG + chr6_1:94126872-94126891 Msa0899230:intron 35.0%
AAACCAATTGTGGTTCAACT+TGG + chr6_1:94126931-94126950 Msa0899230:intron 35.0%
ACAAAACTGTGAATCAACTG+TGG + chr6_1:94126968-94126987 Msa0899230:intron 35.0%
!! AATCAACTAGTCTTCTAGGT+TGG - chr6_1:94126999-94127018 None:intergenic 35.0%
!! TAGGAATCAACTAGTCTTCT+AGG - chr6_1:94127003-94127022 None:intergenic 35.0%
TCGATTCAACTGGTTGAATT+AGG - chr6_1:94127022-94127041 None:intergenic 35.0%
AACACTACTGTCTTGAATGT+TGG + chr6_1:94127242-94127261 Msa0899230:intron 35.0%
TGACATGTGACAATAACTGT+TGG + chr6_1:94127266-94127285 Msa0899230:intron 35.0%
!! CATTAATTTGCAGCTAAGGA+AGG + chr6_1:94127439-94127458 Msa0899230:intron 35.0%
GAAGAAGATGATGTTCCATA+TGG + chr6_1:94127476-94127495 Msa0899230:CDS 35.0%
GATGATGTTCCATATGGATA+TGG + chr6_1:94127482-94127501 Msa0899230:CDS 35.0%
!!! TTCCATTTTGTTTTTGCCAC+AGG + chr6_1:94127509-94127528 Msa0899230:CDS 35.0%
! TTGCAATGCTATTGATTGGA+TGG + chr6_1:94127543-94127562 Msa0899230:CDS 35.0%
GTTCCATCTTGTTCATGTTA+TGG + chr6_1:94127594-94127613 Msa0899230:intron 35.0%
AGAATACACCTAAGCTTCAT+TGG - chr6_1:94127731-94127750 None:intergenic 35.0%
TGAAGCTTAGGTGTATTCTT+TGG + chr6_1:94127732-94127751 Msa0899230:intron 35.0%
TGGAAATATTGTTCTGCAGA+TGG + chr6_1:94127938-94127957 Msa0899230:intron 35.0%
GGGTCAGAATAGTAAATGAA+TGG + chr6_1:94127989-94128008 Msa0899230:CDS 35.0%
TTAGCCTATGTTAGGTATCA+CGG + chr6_1:94128107-94128126 Msa0899230:intron 35.0%
TTGTAGCTTCTACGAAATCA+CGG + chr6_1:94128181-94128200 Msa0899230:intron 35.0%
ATTTGATGTCCACTACATGT+CGG + chr6_1:94128282-94128301 Msa0899230:intron 35.0%
TACATAGTACGAGCATAATG+GGG - chr6_1:94128544-94128563 None:intergenic 35.0%
CATTTGTGCTAGAATCCAAT+TGG - chr6_1:94128617-94128636 None:intergenic 35.0%
! TATTTCTGTGTACCATCCTT+TGG - chr6_1:94128690-94128709 None:intergenic 35.0%
ATGATTGTAAGTAACGTCCA+AGG - chr6_1:94128737-94128756 None:intergenic 35.0%
TCGAGTTTAGTGAAAATCCC+TGG + chr6_1:94122307-94122326 Msa0899230:intron 40.0%
GAAAATCCCGAAAGCTACAA+AGG + chr6_1:94122396-94122415 Msa0899230:intron 40.0%
GTAGAAGGTAAATCAACCAC+AGG + chr6_1:94123071-94123090 Msa0899230:intron 40.0%
GTACGATAAAGTCTTACCTG+TGG - chr6_1:94123090-94123109 None:intergenic 40.0%
GGTAAGACTTTATCGTACCA+AGG + chr6_1:94123092-94123111 Msa0899230:intron 40.0%
TCGTACCAAGGAATGTTCTA+TGG + chr6_1:94123104-94123123 Msa0899230:intron 40.0%
!!! GAATTTTATTTTGGGGTGGG+AGG + chr6_1:94123126-94123145 Msa0899230:intron 40.0%
GGGAATCTTAATGACATGGT+AGG + chr6_1:94123192-94123211 Msa0899230:intron 40.0%
ACATGGTAGGCATACCTTAA+AGG + chr6_1:94123205-94123224 Msa0899230:intron 40.0%
AGAAGATCTTCTTAGTGGAG+TGG + chr6_1:94123668-94123687 Msa0899230:five_prime_UTR 40.0%
! GTGGACTAAAGGATTCTTCA+TGG + chr6_1:94123809-94123828 Msa0899230:CDS 40.0%
TAGCTGCTAATATGTTGGCA+TGG + chr6_1:94123896-94123915 Msa0899230:CDS 40.0%
AGCTGCTAATATGTTGGCAT+GGG + chr6_1:94123897-94123916 Msa0899230:CDS 40.0%
!! TAGTGCATTGACTGAACTCA+AGG + chr6_1:94123945-94123964 Msa0899230:CDS 40.0%
!! AGTGCATTGACTGAACTCAA+GGG + chr6_1:94123946-94123965 Msa0899230:CDS 40.0%
!!! TGGTGTTTTGAGAGTTAGCA+TGG + chr6_1:94124180-94124199 Msa0899230:CDS 40.0%
!!! GGTGTTTTGAGAGTTAGCAT+GGG + chr6_1:94124181-94124200 Msa0899230:CDS 40.0%
TCAACTGAGTTATGTTCACG+AGG - chr6_1:94124312-94124331 None:intergenic 40.0%
CCAACAAGACCTTTAAGTCA+TGG - chr6_1:94124784-94124803 None:intergenic 40.0%
! CCATGACTTAAAGGTCTTGT+TGG + chr6_1:94124781-94124800 Msa0899230:intron 40.0%
!!! AAGTTGCACATTTTGGAGCA+GGG + chr6_1:94124928-94124947 Msa0899230:CDS 40.0%
CTGTTGCAAATACCATCACA+TGG - chr6_1:94125508-94125527 None:intergenic 40.0%
CATGTGATGGTATTTGCAAC+AGG + chr6_1:94125506-94125525 Msa0899230:CDS 40.0%
! AAAATGTTGAGGAGGCATGA+TGG - chr6_1:94125590-94125609 None:intergenic 40.0%
GAGATACGCTTGTCATGATT+TGG - chr6_1:94125640-94125659 None:intergenic 40.0%
!! AATGGTGGCATTTTAAGTCC+AGG + chr6_1:94125796-94125815 Msa0899230:CDS 40.0%
TTCTGATTGCACACCAACAA+AGG - chr6_1:94125846-94125865 None:intergenic 40.0%
TTTGTTGGTGTGCAATCAGA+AGG + chr6_1:94125845-94125864 Msa0899230:intron 40.0%
GATCAATGCATCAGAACATC+AGG + chr6_1:94126540-94126559 Msa0899230:CDS 40.0%
! GATGTTTTGCCAGTCTGTTT+TGG - chr6_1:94126574-94126593 None:intergenic 40.0%
CGATTAGACGAATTGAACCA+TGG - chr6_1:94126863-94126882 None:intergenic 40.0%
! GAACCAAGTTGAACCACAAT+TGG - chr6_1:94126937-94126956 None:intergenic 40.0%
ATTCAACCAGTTGAATCGAC+CGG + chr6_1:94127023-94127042 Msa0899230:intron 40.0%
!! TGTTGGCAGAGCTTTGTTAT+TGG + chr6_1:94127283-94127302 Msa0899230:intron 40.0%
CTCCTGTGGCAAAAACAAAA+TGG - chr6_1:94127514-94127533 None:intergenic 40.0%
TGCCCATAACATGAACAAGA+TGG - chr6_1:94127600-94127619 None:intergenic 40.0%
CATGTTATGGGCATCATACT+TGG + chr6_1:94127607-94127626 Msa0899230:intron 40.0%
GATACCAAACACACACTTAG+TGG + chr6_1:94128237-94128256 Msa0899230:intron 40.0%
TGCTGATAGCTCCAATTGTA+TGG + chr6_1:94128477-94128496 Msa0899230:CDS 40.0%
GATAGCTCCAATTGTATGGA+AGG + chr6_1:94128481-94128500 Msa0899230:CDS 40.0%
TGTCTTGCCTTCCATACAAT+TGG - chr6_1:94128491-94128510 None:intergenic 40.0%
TGGGTTCTTGTAGAAGTCTA+TGG + chr6_1:94128815-94128834 Msa0899230:three_prime_UTR 40.0%
GGTAGGCATACCTTAAAGGT+TGG + chr6_1:94123209-94123228 Msa0899230:intron 45.0%
CCTTTAGTCCACAACCTTGT+TGG - chr6_1:94123801-94123820 None:intergenic 45.0%
! CCAACAAGGTTGTGGACTAA+AGG + chr6_1:94123798-94123817 Msa0899230:CDS 45.0%
! AAAGACTGTTTGGGAGCACA+TGG + chr6_1:94124160-94124179 Msa0899230:CDS 45.0%
CCAGAATGCCATGTATCTCT+TGG - chr6_1:94124545-94124564 None:intergenic 45.0%
CCAAGAGATACATGGCATTC+TGG + chr6_1:94124542-94124561 Msa0899230:CDS 45.0%
GAGATACATGGCATTCTGGA+TGG + chr6_1:94124546-94124565 Msa0899230:CDS 45.0%
ATACATGGCATTCTGGATGG+TGG + chr6_1:94124549-94124568 Msa0899230:CDS 45.0%
TACATGGCATTCTGGATGGT+GGG + chr6_1:94124550-94124569 Msa0899230:CDS 45.0%
GGGCAACCAAGATTGTTCTA+TGG + chr6_1:94124570-94124589 Msa0899230:CDS 45.0%
!! GCTTTGAAATCGTCGGTTCA+TGG - chr6_1:94124754-94124773 None:intergenic 45.0%
! GCAGGAGAAGTTGCACATTT+TGG + chr6_1:94124921-94124940 Msa0899230:intron 45.0%
!!! GAAGTTGCACATTTTGGAGC+AGG + chr6_1:94124927-94124946 Msa0899230:CDS 45.0%
! TTGAGGAGGCATGATGGTAT+TGG - chr6_1:94125584-94125603 None:intergenic 45.0%
ACATATAGCCCCATCAATCC+TGG - chr6_1:94125817-94125836 None:intergenic 45.0%
! CTGATGCATTGATCTCCTTC+TGG - chr6_1:94126534-94126553 None:intergenic 45.0%
GCACTGTAACCAAAACAGAC+TGG + chr6_1:94126562-94126581 Msa0899230:CDS 45.0%
TTGTCAAAACTGGACCGAAC+CGG - chr6_1:94127045-94127064 None:intergenic 45.0%
GGAACATCATCTTCTTCTGC+TGG - chr6_1:94127473-94127492 None:intergenic 45.0%
TGCAAAGTACATAGCTCCTG+TGG - chr6_1:94127528-94127547 None:intergenic 45.0%
TGCAGATGGTCACTTGATGT+GGG + chr6_1:94127952-94127971 Msa0899230:intron 45.0%
TACTATTCTGACCCAAGCAC+TGG - chr6_1:94127983-94128002 None:intergenic 45.0%
CCTATGTTAGGTATCACGGT+GGG + chr6_1:94128111-94128130 Msa0899230:intron 45.0%
GTGTGTGTTTGGTATCACAG+TGG - chr6_1:94128233-94128252 None:intergenic 45.0%
GTTGCCACTAAGTGTGTGTT+TGG - chr6_1:94128244-94128263 None:intergenic 45.0%
ACTCCTCTCATTCCATCCAA+AGG + chr6_1:94128671-94128690 Msa0899230:three_prime_UTR 45.0%
CATCCTTTGGATGGAATGAG+AGG - chr6_1:94128677-94128696 None:intergenic 45.0%
CTCTCATTCCATCCAAAGGA+TGG + chr6_1:94128675-94128694 Msa0899230:three_prime_UTR 45.0%
TCTGTGTACCATCCTTTGGA+TGG - chr6_1:94128686-94128705 None:intergenic 45.0%
!!! TCTATTATATATTTAAAATA+GGG + chr6_1:94124835-94124854 Msa0899230:intron 5.0%
!!! TTTATTTTGGGGTGGGAGGG+TGG + chr6_1:94123130-94123149 Msa0899230:intron 50.0%
!!! TTATTTTGGGGTGGGAGGGT+GGG + chr6_1:94123131-94123150 Msa0899230:intron 50.0%
! AGAGATCGGTGTTCGAACCT+CGG + chr6_1:94124356-94124375 Msa0899230:intron 50.0%
GTGCAGCCAAATCCATGTGA+TGG + chr6_1:94125493-94125512 Msa0899230:intron 50.0%
TGTGCATGCAGTGAACCAGA+AGG + chr6_1:94126516-94126535 Msa0899230:intron 50.0%
!! AGTCTCACCGGTTTCTTCTC+TGG - chr6_1:94126834-94126853 None:intergenic 50.0%
ACCAGTTGAATCGACCGGTT+CGG + chr6_1:94127028-94127047 Msa0899230:intron 50.0%
CTGCAGATGGTCACTTGATG+TGG + chr6_1:94127951-94127970 Msa0899230:intron 50.0%
GCCTATGTTAGGTATCACGG+TGG + chr6_1:94128110-94128129 Msa0899230:intron 50.0%
CCCACCGTGATACCTAACAT+AGG - chr6_1:94128114-94128133 None:intergenic 50.0%
!!! TATTTTGGGGTGGGAGGGTG+GGG + chr6_1:94123132-94123151 Msa0899230:intron 55.0%
CCATGGCTCAGAAGTCTCAC+CGG - chr6_1:94126846-94126865 None:intergenic 55.0%
! ACCGAACCGGTCGATTCAAC+TGG - chr6_1:94127032-94127051 None:intergenic 55.0%
GATGGTCACTTGATGTGGGC+TGG + chr6_1:94127956-94127975 Msa0899230:intron 55.0%
CGTCTCACACCGACATGTAG+TGG - chr6_1:94128294-94128313 None:intergenic 55.0%
!!! ATTTTGGGGTGGGAGGGTGG+GGG + chr6_1:94123133-94123152 Msa0899230:intron 60.0%
CCATAAGTGGGGTGTGTCCG+AGG - chr6_1:94124376-94124395 None:intergenic 60.0%
CCTCGGACACACCCCACTTA+TGG + chr6_1:94124373-94124392 Msa0899230:intron 60.0%
CCGGTGAGACTTCTGAGCCA+TGG + chr6_1:94126843-94126862 Msa0899230:intron 60.0%
!! ATGTGGGCTGGACCAGTGCT+TGG + chr6_1:94127968-94127987 Msa0899230:CDS 60.0%
!! TGTGGGCTGGACCAGTGCTT+GGG + chr6_1:94127969-94127988 Msa0899230:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 94121134 94128885 94121134 ID=Msa0899230;Name=Msa0899230
chr6_1 mRNA 94121134 94128885 94121134 ID=Msa0899230-mRNA-1;Parent=Msa0899230;Name=Msa0899230-mRNA-1;_AED=0.12;_eAED=0.12;_QI=419|0.91|0.92|1|0.41|0.61|13|359|397
chr6_1 exon 94121134 94121445 94121134 ID=Msa0899230-mRNA-1:exon:16026;Parent=Msa0899230-mRNA-1
chr6_1 exon 94123656 94123967 94123656 ID=Msa0899230-mRNA-1:exon:16027;Parent=Msa0899230-mRNA-1
chr6_1 exon 94124137 94124210 94124137 ID=Msa0899230-mRNA-1:exon:16028;Parent=Msa0899230-mRNA-1
chr6_1 exon 94124488 94124647 94124488 ID=Msa0899230-mRNA-1:exon:16029;Parent=Msa0899230-mRNA-1
chr6_1 exon 94124925 94124949 94124925 ID=Msa0899230-mRNA-1:exon:16030;Parent=Msa0899230-mRNA-1
chr6_1 exon 94125043 94125132 94125043 ID=Msa0899230-mRNA-1:exon:16031;Parent=Msa0899230-mRNA-1
chr6_1 exon 94125499 94125670 94125499 ID=Msa0899230-mRNA-1:exon:16032;Parent=Msa0899230-mRNA-1
chr6_1 exon 94125793 94125851 94125793 ID=Msa0899230-mRNA-1:exon:16033;Parent=Msa0899230-mRNA-1
chr6_1 exon 94126527 94126596 94126527 ID=Msa0899230-mRNA-1:exon:16034;Parent=Msa0899230-mRNA-1
chr6_1 exon 94127292 94127363 94127292 ID=Msa0899230-mRNA-1:exon:16035;Parent=Msa0899230-mRNA-1
chr6_1 exon 94127452 94127588 94127452 ID=Msa0899230-mRNA-1:exon:16036;Parent=Msa0899230-mRNA-1
chr6_1 exon 94127957 94128030 94127957 ID=Msa0899230-mRNA-1:exon:16037;Parent=Msa0899230-mRNA-1
chr6_1 exon 94128471 94128885 94128471 ID=Msa0899230-mRNA-1:exon:16038;Parent=Msa0899230-mRNA-1
chr6_1 five_prime_UTR 94121134 94121445 94121134 ID=Msa0899230-mRNA-1:five_prime_utr;Parent=Msa0899230-mRNA-1
chr6_1 five_prime_UTR 94123656 94123762 94123656 ID=Msa0899230-mRNA-1:five_prime_utr;Parent=Msa0899230-mRNA-1
chr6_1 CDS 94123763 94123967 94123763 ID=Msa0899230-mRNA-1:cds;Parent=Msa0899230-mRNA-1
chr6_1 CDS 94124137 94124210 94124137 ID=Msa0899230-mRNA-1:cds;Parent=Msa0899230-mRNA-1
chr6_1 CDS 94124488 94124647 94124488 ID=Msa0899230-mRNA-1:cds;Parent=Msa0899230-mRNA-1
chr6_1 CDS 94124925 94124949 94124925 ID=Msa0899230-mRNA-1:cds;Parent=Msa0899230-mRNA-1
chr6_1 CDS 94125043 94125132 94125043 ID=Msa0899230-mRNA-1:cds;Parent=Msa0899230-mRNA-1
chr6_1 CDS 94125499 94125670 94125499 ID=Msa0899230-mRNA-1:cds;Parent=Msa0899230-mRNA-1
chr6_1 CDS 94125793 94125851 94125793 ID=Msa0899230-mRNA-1:cds;Parent=Msa0899230-mRNA-1
chr6_1 CDS 94126527 94126596 94126527 ID=Msa0899230-mRNA-1:cds;Parent=Msa0899230-mRNA-1
chr6_1 CDS 94127292 94127363 94127292 ID=Msa0899230-mRNA-1:cds;Parent=Msa0899230-mRNA-1
chr6_1 CDS 94127452 94127588 94127452 ID=Msa0899230-mRNA-1:cds;Parent=Msa0899230-mRNA-1
chr6_1 CDS 94127957 94128030 94127957 ID=Msa0899230-mRNA-1:cds;Parent=Msa0899230-mRNA-1
chr6_1 CDS 94128471 94128526 94128471 ID=Msa0899230-mRNA-1:cds;Parent=Msa0899230-mRNA-1
chr6_1 three_prime_UTR 94128527 94128885 94128527 ID=Msa0899230-mRNA-1:three_prime_utr;Parent=Msa0899230-mRNA-1
Gene Sequence

>Msa0899230

ATGGAACCAAGAGAAAGCAACAACATTAATAGTAACCAACAAGGTTGTGGACTAAAGGATTCTTCATGGTGTTGTCAATTCAAAAATGCATCAAATCCTTTGATGGCAAGATATGTCTATGGCTTGATTTTTCTAGCTGCTAATATGTTGGCATGGGCTACACGTGATGAACTTTCTAGTATTAGTGCATTGACTGAACTCAAGGGTTTTAAAGCATGCAAAGTTGGAAAAGACTGTTTGGGAGCACATGGTGTTTTGAGAGTTAGCATGGGTTGCTTTCTATTTTTTATGATGATGTTTTGGTCAACTACAAGGACTTCTAAATTGAATGAACCAAGAGATACATGGCATTCTGGATGGTGGGCAACCAAGATTGTTCTATGGATTATACTGACAATCTTTACATTTTTACTCCCTTCTGAATTGATTGATCTCTATGGAGAAGTTGCACATTTTGGAGCAGGGGTTTTCCTCCTAATTCAACTAGTAAGCATAATCAGCTTCATTACTTGGCTAAATGATTGTTTTGCATCAGAAAAATATGCAGAAAGATGCCAAATCCATGTGATGGTATTTGCAACAGGTTCATATTTTATCTGCTTGGTTGGGATAATTTTGATGTACATTTGGTATGCACCAATACCATCATGCCTCCTCAACATTTTTTTCATCACTTGGACTTTAGTACTTCTCCAAATCATGACAAGCGTATCTCTTCACCCAAAAGTAAATGGTGGCATTTTAAGTCCAGGATTGATGGGGCTATATGTTGTCTTCCTTTGTTGTGAACCAGAAGGAGATCAATGCATCAGAACATCAGGCACTGTAACCAAAACAGACTGGCAAAACATCATTAGCTTTGTTATTGGAATACTAGCAATAGTTATTGCAACATTTTCAACAGGCATAGATTCTAAATGCTTTCAGCTAAGGAAGGGTGATAAACCAGCAGAAGAAGATGATGTTCCATATGGATATGGTTTTTTCCATTTTGTTTTTGCCACAGGAGCTATGTACTTTGCAATGCTATTGATTGGATGGAATACTCATCATTCAATGAGAAAATGGTCACTTGATGTGGGCTGGACCAGTGCTTGGGTCAGAATAGTAAATGAATGGTTGGCAGTCTGTGTATACTTATGGATGCTGATAGCTCCAATTGTATGGAAGGCAAGACAGACTGAATCTACATGA

Protein sequence

>Msa0899230

MEPRESNNINSNQQGCGLKDSSWCCQFKNASNPLMARYVYGLIFLAANMLAWATRDELSSISALTELKGFKACKVGKDCLGAHGVLRVSMGCFLFFMMMFWSTTRTSKLNEPRDTWHSGWWATKIVLWIILTIFTFLLPSELIDLYGEVAHFGAGVFLLIQLVSIISFITWLNDCFASEKYAERCQIHVMVFATGSYFICLVGIILMYIWYAPIPSCLLNIFFITWTLVLLQIMTSVSLHPKVNGGILSPGLMGLYVVFLCCEPEGDQCIRTSGTVTKTDWQNIISFVIGILAIVIATFSTGIDSKCFQLRKGDKPAEEDDVPYGYGFFHFVFATGAMYFAMLLIGWNTHHSMRKWSLDVGWTSAWVRIVNEWLAVCVYLWMLIAPIVWKARQTEST*