AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0120340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0120340 MtrunA17_Chr1g0178671 97.810 137 3 0 1 137 1 137 2.12e-99 281
Msa0120340 MtrunA17_Chr8g0383271 36.634 101 61 2 22 119 70 170 4.50e-18 75.9
Msa0120340 MtrunA17_Chr7g0266291 35.714 84 53 1 44 126 76 159 4.79e-14 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0120340 AT2G16710.1 71.852 135 38 0 2 136 3 137 7.74e-72 211
Msa0120340 AT2G16710.3 69.286 140 37 1 3 136 4 143 3.18e-69 205
Msa0120340 AT2G36260.1 69.725 109 32 1 17 125 1 108 1.02e-55 170
Msa0120340 AT2G16710.2 73.529 102 27 0 2 103 3 104 1.45e-51 159
Msa0120340 AT1G10500.1 32.407 108 70 2 19 123 69 176 8.18e-18 75.9
Msa0120340 AT5G03905.1 31.481 108 72 2 21 126 50 157 4.90e-13 62.8

Find 61 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGGGTATGTTCGTCATTT+TGG 0.156614 1_3:-45052446 None:intergenic
ATCATCAACGAAATCCATTT+TGG 0.208042 1_3:-45052925 None:intergenic
CCACATTGGCCTTTGGAGTT+TGG 0.248774 1_3:-45055859 None:intergenic
AAAAGAGAAATTTGATGAAT+TGG 0.258711 1_3:+45052842 Msa0120340:CDS
GCACGTTGTTGGAACCAAAA+TGG 0.276938 1_3:+45052911 Msa0120340:CDS
TCAACCATTTCCTTCCTTAG+AGG 0.297312 1_3:-45055920 None:intergenic
TCCTTAGAGGCTCCAGTACT+TGG 0.316007 1_3:-45055907 None:intergenic
ACCAAGTACTGGAGCCTCTA+AGG 0.316388 1_3:+45055906 Msa0120340:CDS
TTTAGTCATTTCATCATGTA+AGG 0.342407 1_3:-45052464 None:intergenic
CGAAATTACTGAGATTGAAT+TGG 0.344813 1_3:-45052516 None:intergenic
GTGGATACTGTATAATTTGT+AGG 0.368896 1_3:+45056208 Msa0120340:three_prime_UTR
TTCTTCCGAATTCGTTGGAT+TGG 0.383312 1_3:+45052404 Msa0120340:five_prime_UTR
GATGAATTGGTTGAAGATAA+AGG 0.389292 1_3:+45052855 Msa0120340:CDS
TAGCATGCAAACACCACAAT+TGG 0.392440 1_3:+45056005 Msa0120340:three_prime_UTR
ACCACAACCACATTGGCCTT+TGG 0.397048 1_3:-45055866 None:intergenic
CTGAGATTGAATTGGTGATT+GGG 0.420217 1_3:-45052508 None:intergenic
AGACTCCAATCCAACGAATT+CGG 0.422958 1_3:-45052409 None:intergenic
CCACCTTCTTCCGAATTCGT+TGG 0.429773 1_3:+45052399 Msa0120340:five_prime_UTR
ACTGAGATTGAATTGGTGAT+TGG 0.437838 1_3:-45052509 None:intergenic
GAATTCGTTGGATTGGAGTC+TGG 0.444757 1_3:+45052411 Msa0120340:five_prime_UTR
TTTCGTAATTAACAAGCAAT+GGG 0.449583 1_3:+45052534 Msa0120340:exon
ATTTCGTAATTAACAAGCAA+TGG 0.463321 1_3:+45052533 Msa0120340:exon
AAGGCTCTTATGCACGTTGT+TGG 0.472081 1_3:+45052900 Msa0120340:CDS
GGAGCCTCTAAGGAAGGAAA+TGG 0.477979 1_3:+45055916 Msa0120340:CDS
CTCTGAAGCTGATGCTGACA+AGG 0.484682 1_3:+45056110 Msa0120340:three_prime_UTR
ACAACGTGCATAAGAGCCTT+AGG 0.496168 1_3:-45052897 None:intergenic
CGCTGCCATAGCCATCGCCT+TGG 0.499390 1_3:-45052559 None:intergenic
ACTGAAATCATATCAGTGTC+AGG 0.499683 1_3:-45056077 None:intergenic
GTCAAAGCTCGCGGTTGTAA+TGG 0.502505 1_3:+45052693 Msa0120340:CDS
ATTTCGTTGATGATAAACTA+AGG 0.504621 1_3:+45052934 Msa0120340:CDS
TTCATGACAAAACCAAGTAC+TGG 0.509644 1_3:+45055895 Msa0120340:CDS
GGGTTCCAAGGCGATGGCTA+TGG 0.513236 1_3:+45052554 Msa0120340:CDS
TCCAAAGGCCAATGTGGTTG+TGG 0.524509 1_3:+45055865 Msa0120340:CDS
AATCCAACGAATTCGGAAGA+AGG 0.529950 1_3:-45052402 None:intergenic
TTCATTAATCCAAACTCCAA+AGG 0.536589 1_3:+45055850 Msa0120340:CDS
TTAGTCATTTCATCATGTAA+GGG 0.539878 1_3:-45052463 None:intergenic
CAAGGCGATGGCTATGGCAG+CGG 0.545268 1_3:+45052560 Msa0120340:CDS
CAAAGACCGTTCTTAAAGCT+CGG 0.547413 1_3:+45052669 Msa0120340:CDS
TGAGATTGAATTGGTGATTG+GGG 0.550309 1_3:-45052507 None:intergenic
TATTCTAGAGGCGGCGGCGT+CGG 0.554070 1_3:-45052625 None:intergenic
TACACTTCTTGCTTCAGCAA+AGG 0.555478 1_3:+45052646 Msa0120340:CDS
TTAACAAGCAATGGGTTCCA+AGG 0.561441 1_3:+45052542 Msa0120340:exon
AGCAATGGGTTCCAAGGCGA+TGG 0.573401 1_3:+45052548 Msa0120340:exon
AGATAAGCACGGCGGTGCGA+CGG 0.576266 1_3:+45052586 Msa0120340:CDS
AATGACTAAATTATCCTCAC+AGG 0.577472 1_3:+45052477 Msa0120340:five_prime_UTR
GGCGGCGTCGGTTAACTCAA+CGG 0.585211 1_3:-45052613 None:intergenic
GTTGAAACTGTCATTCAACT+AGG 0.593745 1_3:+45055938 Msa0120340:exon
CCAACGAATTCGGAAGAAGG+TGG 0.596750 1_3:-45052399 None:intergenic
AGTACTGGAGCCTCTAAGGA+AGG 0.618446 1_3:+45055910 Msa0120340:CDS
GAAGTGTATTCTAGAGGCGG+CGG 0.620258 1_3:-45052631 None:intergenic
AAGATTCACCACAACCACAT+TGG 0.628045 1_3:-45055873 None:intergenic
CCAAACTCCAAAGGCCAATG+TGG 0.629156 1_3:+45055859 Msa0120340:CDS
CAAGAAGTGTATTCTAGAGG+CGG 0.641303 1_3:-45052634 None:intergenic
AAGCAAGAAGTGTATTCTAG+AGG 0.646366 1_3:-45052637 None:intergenic
TTGACGCCGAGCTTTAAGAA+CGG 0.652738 1_3:-45052675 None:intergenic
TCTTACACGCTAAATTACGC+AGG 0.659336 1_3:+45052720 Msa0120340:CDS
AAATTACAGAAATCCAATTG+TGG 0.661641 1_3:-45056018 None:intergenic
AAGCTCGGCGTCAAAGCTCG+CGG 0.670346 1_3:+45052684 Msa0120340:CDS
ATTGGGGATTTATACCTGTG+AGG 0.673840 1_3:-45052491 None:intergenic
GGCAGCGGAGAAGATAAGCA+CGG 0.676966 1_3:+45052575 Msa0120340:CDS
AGCGGAGAAGATAAGCACGG+CGG 0.763606 1_3:+45052578 Msa0120340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATAATTGTTTTTATGA+GGG - chr1_3:45054985-45055004 None:intergenic 10.0%
!! TAATTATATGATGAAGTTTA+TGG - chr1_3:45053807-45053826 None:intergenic 15.0%
!!! TATATAATTGTTTTTATGAG+GGG - chr1_3:45054984-45055003 None:intergenic 15.0%
!!! CATATATAATTGTTTTTATG+AGG - chr1_3:45054986-45055005 None:intergenic 15.0%
!! TTGTTATATAAATGTTGATA+TGG - chr1_3:45055468-45055487 None:intergenic 15.0%
!! TAATAAACGAAATTCAAAGA+GGG - chr1_3:45052759-45052778 None:intergenic 20.0%
!! ATAATAAACGAAATTCAAAG+AGG - chr1_3:45052760-45052779 None:intergenic 20.0%
!!! GTATTGATTTTAAGATTTGT+TGG + chr1_3:45052801-45052820 Msa0120340:intron 20.0%
!! AAAAGAGAAATTTGATGAAT+TGG + chr1_3:45052842-45052861 Msa0120340:CDS 20.0%
!!! TTCTTTGTTCAATTTTGTTT+TGG + chr1_3:45052995-45053014 Msa0120340:intron 20.0%
!! TGAATCTTATTATCTTATCA+AGG + chr1_3:45053051-45053070 Msa0120340:intron 20.0%
!!! TTTTTACTGTTGTTTGAAAT+TGG + chr1_3:45053114-45053133 Msa0120340:intron 20.0%
!! AAGTAATGCATATTCTTAAT+TGG - chr1_3:45054112-45054131 None:intergenic 20.0%
!! AAGAATATGCATTACTTAAA+AGG + chr1_3:45054115-45054134 Msa0120340:intron 20.0%
!! AGAATATGCATTACTTAAAA+GGG + chr1_3:45054116-45054135 Msa0120340:intron 20.0%
!! TGTTATGACAATAATGAAAT+AGG + chr1_3:45054552-45054571 Msa0120340:intron 20.0%
!! AGTGTTATGAATATTATAAG+TGG - chr1_3:45054796-45054815 None:intergenic 20.0%
!!! ATATAATTGTTTTTATGAGG+GGG - chr1_3:45054983-45055002 None:intergenic 20.0%
!! AAATTATGAACATCTTGAAT+TGG - chr1_3:45055373-45055392 None:intergenic 20.0%
!! CATGTAAAAAAATTGTATTG+TGG + chr1_3:45056189-45056208 Msa0120340:three_prime_UTR 20.0%
! TTAGTCATTTCATCATGTAA+GGG - chr1_3:45052466-45052485 None:intergenic 25.0%
! TTTAGTCATTTCATCATGTA+AGG - chr1_3:45052467-45052486 None:intergenic 25.0%
! ATTTCGTAATTAACAAGCAA+TGG + chr1_3:45052533-45052552 Msa0120340:exon 25.0%
! TTTCGTAATTAACAAGCAAT+GGG + chr1_3:45052534-45052553 Msa0120340:exon 25.0%
!!! TTGATTTTAAGATTTGTTGG+TGG + chr1_3:45052804-45052823 Msa0120340:intron 25.0%
!!! TAAGATTTTGATTGATCCTA+AGG + chr1_3:45052881-45052900 Msa0120340:CDS 25.0%
!!! ATTTCGTTGATGATAAACTA+AGG + chr1_3:45052934-45052953 Msa0120340:CDS 25.0%
! AAATTATCCACCTCAATATT+AGG + chr1_3:45053879-45053898 Msa0120340:intron 25.0%
!! TGTTGTACAGCATATTTTAT+CGG - chr1_3:45053916-45053935 None:intergenic 25.0%
! CATAGAAATTTCATTTAGTG+AGG - chr1_3:45054258-45054277 None:intergenic 25.0%
!! TGTATCAATTTTGTCAATTG+CGG + chr1_3:45054330-45054349 Msa0120340:intron 25.0%
! AGATGATTCTATTATTCTCT+TGG + chr1_3:45054626-45054645 Msa0120340:intron 25.0%
! TATAGAGAAATACAATGACT+TGG + chr1_3:45054681-45054700 Msa0120340:intron 25.0%
! ATAGAGAAATACAATGACTT+GGG + chr1_3:45054682-45054701 Msa0120340:intron 25.0%
! TGCTAATTTAGAGAAGAATA+TGG - chr1_3:45055094-45055113 None:intergenic 25.0%
! TTAGTAAATGCAGATATTCA+AGG - chr1_3:45055232-45055251 None:intergenic 25.0%
!! AGATGTTCATAATTTTCTTG+AGG + chr1_3:45055378-45055397 Msa0120340:intron 25.0%
! GAAAGAAAAACTTATAAGTG+TGG - chr1_3:45055971-45055990 None:intergenic 25.0%
! AAATTACAGAAATCCAATTG+TGG - chr1_3:45056021-45056040 None:intergenic 25.0%
! AGAGGAAAATAAAAAAGCTT+TGG + chr1_3:45056054-45056073 Msa0120340:three_prime_UTR 25.0%
AATGACTAAATTATCCTCAC+AGG + chr1_3:45052477-45052496 Msa0120340:five_prime_UTR 30.0%
CGAAATTACTGAGATTGAAT+TGG - chr1_3:45052519-45052538 None:intergenic 30.0%
GATGAATTGGTTGAAGATAA+AGG + chr1_3:45052855-45052874 Msa0120340:CDS 30.0%
! ATCATCAACGAAATCCATTT+TGG - chr1_3:45052928-45052947 None:intergenic 30.0%
GTAAAAACTATCTGAACAGA+AGG - chr1_3:45053101-45053120 None:intergenic 30.0%
ATTCATATCTTGATGTTGAG+TGG + chr1_3:45053142-45053161 Msa0120340:intron 30.0%
GCTATTAATTCTCATTCAAG+TGG - chr1_3:45053249-45053268 None:intergenic 30.0%
! CGAGACTGATTCAAAAAATT+TGG - chr1_3:45053277-45053296 None:intergenic 30.0%
GTTTAATGAGTGATTGAAAC+CGG + chr1_3:45053424-45053443 Msa0120340:intron 30.0%
ATTGTGTAATTAACCAGTTG+AGG - chr1_3:45053632-45053651 None:intergenic 30.0%
ATCATATAATTATACCCACC+CGG + chr1_3:45053815-45053834 Msa0120340:intron 30.0%
GTATTTATTCAGTTTGATCC+GGG - chr1_3:45053836-45053855 None:intergenic 30.0%
GGTATTTATTCAGTTTGATC+CGG - chr1_3:45053837-45053856 None:intergenic 30.0%
TTGAGGTGGATAATTTAATC+TGG - chr1_3:45053875-45053894 None:intergenic 30.0%
!! ACTTTTTCCTAATATTGAGG+TGG - chr1_3:45053889-45053908 None:intergenic 30.0%
ACCTCAATATTAGGAAAAAG+TGG + chr1_3:45053888-45053907 Msa0120340:intron 30.0%
CCTCAATATTAGGAAAAAGT+GGG + chr1_3:45053889-45053908 Msa0120340:intron 30.0%
ACTATGTCATAAACCTCATT+AGG + chr1_3:45054008-45054027 Msa0120340:intron 30.0%
TGCATATTCTTAATTGGTGA+TGG - chr1_3:45054106-45054125 None:intergenic 30.0%
ATTAGTTACCATTTGATCGT+TGG + chr1_3:45054453-45054472 Msa0120340:intron 30.0%
ATAAAGTAGAGAAGTAGAGA+AGG + chr1_3:45054582-45054601 Msa0120340:intron 30.0%
TTCTCTTGGTATGTACAATT+AGG + chr1_3:45054640-45054659 Msa0120340:intron 30.0%
TAGAGAAATACAATGACTTG+GGG + chr1_3:45054683-45054702 Msa0120340:intron 30.0%
CATATAGCAATTGGGTTATT+GGG - chr1_3:45054768-45054787 None:intergenic 30.0%
TTAATGAGGCATATCATCAA+TGG - chr1_3:45054832-45054851 None:intergenic 30.0%
!! TCTCTAGTAAGGTTTTAATG+AGG - chr1_3:45054846-45054865 None:intergenic 30.0%
TTACTAGAGAAAAACCCAAT+GGG + chr1_3:45054856-45054875 Msa0120340:intron 30.0%
!!! CTCGAATTTTTTTTCCCATT+GGG - chr1_3:45054873-45054892 None:intergenic 30.0%
!!! ACTCGAATTTTTTTTCCCAT+TGG - chr1_3:45054874-45054893 None:intergenic 30.0%
TGGGATAAAACAATGGTTAA+GGG + chr1_3:45054929-45054948 Msa0120340:intron 30.0%
!!! GGTTTTCTTATTTTGAAAGG+AGG - chr1_3:45055154-45055173 None:intergenic 30.0%
!!! TGCGGTTTTCTTATTTTGAA+AGG - chr1_3:45055157-45055176 None:intergenic 30.0%
TTACACATACAAGAAACTTG+CGG - chr1_3:45055175-45055194 None:intergenic 30.0%
GTGGAGAATGTTCTTTATTA+AGG - chr1_3:45055207-45055226 None:intergenic 30.0%
! TCATAATTTTCTTGAGGACA+TGG + chr1_3:45055384-45055403 Msa0120340:intron 30.0%
!!! ACGCTATTTTAGCATCTATT+TGG + chr1_3:45055540-45055559 Msa0120340:intron 30.0%
! CTTTACCTCTTTTGTAACAA+AGG + chr1_3:45055689-45055708 Msa0120340:intron 30.0%
ATCTTCCTTTGTTACAAAAG+AGG - chr1_3:45055697-45055716 None:intergenic 30.0%
GTAGCATGAATATTAGTGTT+TGG + chr1_3:45055729-45055748 Msa0120340:intron 30.0%
TTCATTAATCCAAACTCCAA+AGG + chr1_3:45055850-45055869 Msa0120340:CDS 30.0%
! GTGGATACTGTATAATTTGT+AGG + chr1_3:45056208-45056227 Msa0120340:three_prime_UTR 30.0%
!! AAGGGTATGTTCGTCATTTT+GGG - chr1_3:45052448-45052467 None:intergenic 35.0%
!! TAAGGGTATGTTCGTCATTT+TGG - chr1_3:45052449-45052468 None:intergenic 35.0%
! TGAGATTGAATTGGTGATTG+GGG - chr1_3:45052510-45052529 None:intergenic 35.0%
! CTGAGATTGAATTGGTGATT+GGG - chr1_3:45052511-45052530 None:intergenic 35.0%
! ACTGAGATTGAATTGGTGAT+TGG - chr1_3:45052512-45052531 None:intergenic 35.0%
! AAGCAAGAAGTGTATTCTAG+AGG - chr1_3:45052640-45052659 None:intergenic 35.0%
ATTAACCAGTTGAGGATGAT+CGG - chr1_3:45053624-45053643 None:intergenic 35.0%
TTACACAATTCACACACTAC+AGG + chr1_3:45053643-45053662 Msa0120340:intron 35.0%
TACACAATTCACACACTACA+GGG + chr1_3:45053644-45053663 Msa0120340:intron 35.0%
GTGGATAATTTAATCTGGAC+AGG - chr1_3:45053870-45053889 None:intergenic 35.0%
!!! CCCACTTTTTCCTAATATTG+AGG - chr1_3:45053892-45053911 None:intergenic 35.0%
AATCATCTCTCAACCTAATG+AGG - chr1_3:45054024-45054043 None:intergenic 35.0%
!! CTTAATTGGTGATGGAGTTA+GGG - chr1_3:45054098-45054117 None:intergenic 35.0%
!! TCTTAATTGGTGATGGAGTT+AGG - chr1_3:45054099-45054118 None:intergenic 35.0%
GATGAAACACTAATGAAACG+TGG + chr1_3:45054147-45054166 Msa0120340:intron 35.0%
TTGCAATCTCGATTCTAAGT+GGG + chr1_3:45054222-45054241 Msa0120340:intron 35.0%
! TCTTTTAAGCTTGTGCTCTT+GGG - chr1_3:45054422-45054441 None:intergenic 35.0%
! GGGTCATACTATTAGCTTAT+TGG - chr1_3:45054748-45054767 None:intergenic 35.0%
CCATATAGCAATTGGGTTAT+TGG - chr1_3:45054769-45054788 None:intergenic 35.0%
CCAATAACCCAATTGCTATA+TGG + chr1_3:45054766-45054785 Msa0120340:intron 35.0%
TGGATGTCCATATAGCAATT+GGG - chr1_3:45054776-45054795 None:intergenic 35.0%
TATCATCAATGGACATCCAA+GGG - chr1_3:45054821-45054840 None:intergenic 35.0%
ATATCATCAATGGACATCCA+AGG - chr1_3:45054822-45054841 None:intergenic 35.0%
! CATTGGGTTTTTCTCTAGTA+AGG - chr1_3:45054857-45054876 None:intergenic 35.0%
CTTACTAGAGAAAAACCCAA+TGG + chr1_3:45054855-45054874 Msa0120340:intron 35.0%
!! AACCATTGTTTTATCCCACT+GGG - chr1_3:45054927-45054946 None:intergenic 35.0%
!! TAACCATTGTTTTATCCCAC+TGG - chr1_3:45054928-45054947 None:intergenic 35.0%
GTGGGATAAAACAATGGTTA+AGG + chr1_3:45054928-45054947 Msa0120340:intron 35.0%
TCAACAACTTTACTTGACAG+TGG + chr1_3:45055043-45055062 Msa0120340:intron 35.0%
AATGCAGATATTCAAGGAAG+TGG - chr1_3:45055226-45055245 None:intergenic 35.0%
! AAATAGCGTAGTGGAATTTG+TGG - chr1_3:45055529-45055548 None:intergenic 35.0%
TAGATGCTAAAATAGCGTAG+TGG - chr1_3:45055538-45055557 None:intergenic 35.0%
! GTACTAAAAAGCACAGCTAT+AGG + chr1_3:45055572-45055591 Msa0120340:intron 35.0%
!!! TGCCTCTATTTTAGCATATG+TGG + chr1_3:45055642-45055661 Msa0120340:intron 35.0%
TGCCACATATGCTAAAATAG+AGG - chr1_3:45055647-45055666 None:intergenic 35.0%
GAGGTAAAGCTTAACAAAAG+AGG - chr1_3:45055678-45055697 None:intergenic 35.0%
TTCATGACAAAACCAAGTAC+TGG + chr1_3:45055895-45055914 Msa0120340:CDS 35.0%
GTTGAAACTGTCATTCAACT+AGG + chr1_3:45055938-45055957 Msa0120340:exon 35.0%
ACTGAAATCATATCAGTGTC+AGG - chr1_3:45056080-45056099 None:intergenic 35.0%
AATCCAACGAATTCGGAAGA+AGG - chr1_3:45052405-45052424 None:intergenic 40.0%
TTCTTCCGAATTCGTTGGAT+TGG + chr1_3:45052404-45052423 Msa0120340:five_prime_UTR 40.0%
AGACTCCAATCCAACGAATT+CGG - chr1_3:45052412-45052431 None:intergenic 40.0%
ATTGGGGATTTATACCTGTG+AGG - chr1_3:45052494-45052513 None:intergenic 40.0%
! TTAACAAGCAATGGGTTCCA+AGG + chr1_3:45052542-45052561 Msa0120340:exon 40.0%
! CAAGAAGTGTATTCTAGAGG+CGG - chr1_3:45052637-45052656 None:intergenic 40.0%
TACACTTCTTGCTTCAGCAA+AGG + chr1_3:45052646-45052665 Msa0120340:CDS 40.0%
CAAAGACCGTTCTTAAAGCT+CGG + chr1_3:45052669-45052688 Msa0120340:CDS 40.0%
TCTTACACGCTAAATTACGC+AGG + chr1_3:45052720-45052739 Msa0120340:CDS 40.0%
! GAACAGAAGGATTAGCAACT+TGG - chr1_3:45053088-45053107 None:intergenic 40.0%
TTCTCATTCAAGTGGTGTGT+CGG - chr1_3:45053241-45053260 None:intergenic 40.0%
!!! GAGTTTGTTTTGGTCATGTC+AGG - chr1_3:45053365-45053384 None:intergenic 40.0%
AGCATGAACAACATAGAGAC+CGG - chr1_3:45053446-45053465 None:intergenic 40.0%
AAAAGGTTCCGTGACACAAA+CGG - chr1_3:45053494-45053513 None:intergenic 40.0%
! AACCTTTTCCGTGACACAAA+CGG + chr1_3:45053506-45053525 Msa0120340:intron 40.0%
! TCCAGAGAGTATGCAATGTT+GGG - chr1_3:45053584-45053603 None:intergenic 40.0%
CTAGCTTGAAGGATTTGTCA+CGG - chr1_3:45053715-45053734 None:intergenic 40.0%
! AGGTTCGTAATCTAGCTTGA+AGG - chr1_3:45053726-45053745 None:intergenic 40.0%
CAAGCTAGATTACGAACCTT+TGG + chr1_3:45053727-45053746 Msa0120340:intron 40.0%
GTTGACAAGTTCCATGTTGA+GGG - chr1_3:45053783-45053802 None:intergenic 40.0%
AGTTGACAAGTTCCATGTTG+AGG - chr1_3:45053784-45053803 None:intergenic 40.0%
TTATTCAGTTTGATCCGGGT+GGG - chr1_3:45053832-45053851 None:intergenic 40.0%
TTTATTCAGTTTGATCCGGG+TGG - chr1_3:45053833-45053852 None:intergenic 40.0%
TGTGAGAGAACTAATGATCC+CGG - chr1_3:45053988-45054007 None:intergenic 40.0%
GTATTCTGCTATGCTATGCT+TGG + chr1_3:45054175-45054194 Msa0120340:intron 40.0%
GTTGCAATCTCGATTCTAAG+TGG + chr1_3:45054221-45054240 Msa0120340:intron 40.0%
TGTCTTGAGCTAGTGTTCTT+AGG - chr1_3:45054281-45054300 None:intergenic 40.0%
! GTCTTTTAAGCTTGTGCTCT+TGG - chr1_3:45054423-45054442 None:intergenic 40.0%
ACATCGATCCAACGATCAAA+TGG - chr1_3:45054464-45054483 None:intergenic 40.0%
TGGATCGATGTTGTTAACTG+CGG + chr1_3:45054473-45054492 Msa0120340:intron 40.0%
AGTAGAGAAGGAGAGAGAAA+AGG + chr1_3:45054594-45054613 Msa0120340:intron 40.0%
GTGGATGTCCATATAGCAAT+TGG - chr1_3:45054777-45054796 None:intergenic 40.0%
ATATTCATAACACTCCCCCT+TGG + chr1_3:45054802-45054821 Msa0120340:intron 40.0%
ATCATCAATGGACATCCAAG+GGG - chr1_3:45054820-45054839 None:intergenic 40.0%
! AACATCATTTTGTGCCCAGT+GGG + chr1_3:45054910-45054929 Msa0120340:intron 40.0%
TTGAATCCACTGCTCTTGAT+CGG + chr1_3:45055601-45055620 Msa0120340:intron 40.0%
AAGATTCACCACAACCACAT+TGG - chr1_3:45055876-45055895 None:intergenic 40.0%
TCAACCATTTCCTTCCTTAG+AGG - chr1_3:45055923-45055942 None:intergenic 40.0%
TAGCATGCAAACACCACAAT+TGG + chr1_3:45056005-45056024 Msa0120340:three_prime_UTR 40.0%
! AATTTTGCTTGCGAGTACAG+AGG + chr1_3:45056036-45056055 Msa0120340:three_prime_UTR 40.0%
! GAATTCGTTGGATTGGAGTC+TGG + chr1_3:45052411-45052430 Msa0120340:five_prime_UTR 45.0%
!! TTGACGCCGAGCTTTAAGAA+CGG - chr1_3:45052678-45052697 None:intergenic 45.0%
ACAACGTGCATAAGAGCCTT+AGG - chr1_3:45052900-45052919 None:intergenic 45.0%
AAGGCTCTTATGCACGTTGT+TGG + chr1_3:45052900-45052919 Msa0120340:CDS 45.0%
GCACGTTGTTGGAACCAAAA+TGG + chr1_3:45052911-45052930 Msa0120340:CDS 45.0%
TGCTGCTATGAATCCACAAC+CGG + chr1_3:45053316-45053335 Msa0120340:intron 45.0%
! GTCCAGAGAGTATGCAATGT+TGG - chr1_3:45053585-45053604 None:intergenic 45.0%
TGTGGTGTTCAAGAGACCAA+AGG - chr1_3:45053746-45053765 None:intergenic 45.0%
TATCCCAATCTCCCTCAACA+TGG + chr1_3:45053769-45053788 Msa0120340:intron 45.0%
GTTCCATGTTGAGGGAGATT+GGG - chr1_3:45053775-45053794 None:intergenic 45.0%
AGTTCCATGTTGAGGGAGAT+TGG - chr1_3:45053776-45053795 None:intergenic 45.0%
ATTTAATCTGGACAGGCGAG+AGG - chr1_3:45053863-45053882 None:intergenic 45.0%
AACTAATGATCCCGGTTGAG+AGG - chr1_3:45053980-45053999 None:intergenic 45.0%
! GCTATGCTATGCTTGGTCTT+AGG + chr1_3:45054182-45054201 Msa0120340:intron 45.0%
GAGCAAGCACCAATGACTTA+GGG + chr1_3:45054705-45054724 Msa0120340:intron 45.0%
CTTAGGGAGCAAGCACAATA+TGG + chr1_3:45054721-45054740 Msa0120340:intron 45.0%
TCATCAATGGACATCCAAGG+GGG - chr1_3:45054819-45054838 None:intergenic 45.0%
! CAACATCATTTTGTGCCCAG+TGG + chr1_3:45054909-45054928 Msa0120340:intron 45.0%
TGCCCAGTGGGATAAAACAA+TGG + chr1_3:45054922-45054941 Msa0120340:intron 45.0%
! CACTATTTCCCCTCTTTTCC+TGG + chr1_3:45055811-45055830 Msa0120340:intron 45.0%
TCAGATCTGCCAGGAAAAGA+GGG - chr1_3:45055823-45055842 None:intergenic 45.0%
AAAACGAACTCAGATCTGCC+AGG - chr1_3:45055832-45055851 None:intergenic 45.0%
!! ATATATATATATATATATTG+TGG - chr1_3:45055274-45055293 None:intergenic 5.0%
CCAACGAATTCGGAAGAAGG+TGG - chr1_3:45052402-45052421 None:intergenic 50.0%
CCACCTTCTTCCGAATTCGT+TGG + chr1_3:45052399-45052418 Msa0120340:five_prime_UTR 50.0%
! GAAGTGTATTCTAGAGGCGG+CGG - chr1_3:45052634-45052653 None:intergenic 50.0%
GTCAAAGCTCGCGGTTGTAA+TGG + chr1_3:45052693-45052712 Msa0120340:CDS 50.0%
!! AGCGGAGGGTGAGTTTGTTT+TGG - chr1_3:45053375-45053394 None:intergenic 50.0%
AGCTACAGCTGTTGCATCAG+AGG - chr1_3:45053398-45053417 None:intergenic 50.0%
ATTGCACGCCGTTTGTGTCA+CGG + chr1_3:45053483-45053502 Msa0120340:intron 50.0%
GCCCAACATTGCATACTCTC+TGG + chr1_3:45053580-45053599 Msa0120340:intron 50.0%
! ATGTGCCGATCATCCTCAAC+TGG + chr1_3:45053616-45053635 Msa0120340:intron 50.0%
GCAGTCAGATTTGAGCGAGT+TGG + chr1_3:45053682-45053701 Msa0120340:intron 50.0%
AGGGAGATTGGGATAGCATG+TGG - chr1_3:45053764-45053783 None:intergenic 50.0%
GTTGAGAGGAGGTGGAATGT+TGG - chr1_3:45053966-45053985 None:intergenic 50.0%
ACATTCCACCTCCTCTCAAC+CGG + chr1_3:45053966-45053985 Msa0120340:intron 50.0%
TAATGATCCCGGTTGAGAGG+AGG - chr1_3:45053977-45053996 None:intergenic 50.0%
TGATGAAGGATCCATGGCTG+CGG - chr1_3:45054069-45054088 None:intergenic 50.0%
TGAGGGTGATGAAGGATCCA+TGG - chr1_3:45054075-45054094 None:intergenic 50.0%
AGTTAGGGTGAGGGTGATGA+AGG - chr1_3:45054083-45054102 None:intergenic 50.0%
!! TGGTGATGGAGTTAGGGTGA+GGG - chr1_3:45054092-45054111 None:intergenic 50.0%
!! TTGGTGATGGAGTTAGGGTG+AGG - chr1_3:45054093-45054112 None:intergenic 50.0%
GGAGCAAGCACCAATGACTT+AGG + chr1_3:45054704-45054723 Msa0120340:intron 50.0%
GTGCTTGCTCCCTAAGTCAT+TGG - chr1_3:45054717-45054736 None:intergenic 50.0%
AAGGATCCGATCAAGAGCAG+TGG - chr1_3:45055610-45055629 None:intergenic 50.0%
AGAGGCAGAGCAGCATCAAA+AGG - chr1_3:45055629-45055648 None:intergenic 50.0%
CAGATCTGCCAGGAAAAGAG+GGG - chr1_3:45055822-45055841 None:intergenic 50.0%
CTCAGATCTGCCAGGAAAAG+AGG - chr1_3:45055824-45055843 None:intergenic 50.0%
!! CCACATTGGCCTTTGGAGTT+TGG - chr1_3:45055862-45055881 None:intergenic 50.0%
CCAAACTCCAAAGGCCAATG+TGG + chr1_3:45055859-45055878 Msa0120340:CDS 50.0%
TCCAAAGGCCAATGTGGTTG+TGG + chr1_3:45055865-45055884 Msa0120340:CDS 50.0%
!! ACCACAACCACATTGGCCTT+TGG - chr1_3:45055869-45055888 None:intergenic 50.0%
!! ACCAAGTACTGGAGCCTCTA+AGG + chr1_3:45055906-45055925 Msa0120340:CDS 50.0%
TCCTTAGAGGCTCCAGTACT+TGG - chr1_3:45055910-45055929 None:intergenic 50.0%
! AGTACTGGAGCCTCTAAGGA+AGG + chr1_3:45055910-45055929 Msa0120340:CDS 50.0%
! GGAGCCTCTAAGGAAGGAAA+TGG + chr1_3:45055916-45055935 Msa0120340:CDS 50.0%
!! CTCTGAAGCTGATGCTGACA+AGG + chr1_3:45056110-45056129 Msa0120340:three_prime_UTR 50.0%
!! GTTCGTCATTTTGGGTCGCG+TGG - chr1_3:45052440-45052459 None:intergenic 55.0%
! AGCAATGGGTTCCAAGGCGA+TGG + chr1_3:45052548-45052567 Msa0120340:exon 55.0%
GGCAGCGGAGAAGATAAGCA+CGG + chr1_3:45052575-45052594 Msa0120340:CDS 55.0%
AGCGGAGAAGATAAGCACGG+CGG + chr1_3:45052578-45052597 Msa0120340:CDS 55.0%
CATGTCAGGCTAGACAGACC+CGG - chr1_3:45053351-45053370 None:intergenic 55.0%
TGTTGCATCAGAGGAGCGGA+GGG - chr1_3:45053389-45053408 None:intergenic 55.0%
CAGCTGTTGCATCAGAGGAG+CGG - chr1_3:45053393-45053412 None:intergenic 55.0%
CGCCGTTTGTGTCACGGAAA+AGG - chr1_3:45053511-45053530 None:intergenic 55.0%
ACTGCACGCCGTTTGTGTCA+CGG - chr1_3:45053517-45053536 None:intergenic 55.0%
ATCTGGACAGGCGAGAGGAA+TGG - chr1_3:45053858-45053877 None:intergenic 55.0%
CATTCCACCTCCTCTCAACC+GGG + chr1_3:45053967-45053986 Msa0120340:intron 55.0%
TGCGGGCGGAAGATTCAGTT+TGG - chr1_3:45054051-45054070 None:intergenic 55.0%
GATGAAGGATCCATGGCTGC+GGG - chr1_3:45054068-45054087 None:intergenic 55.0%
GGGTTCCAAGGCGATGGCTA+TGG + chr1_3:45052554-45052573 Msa0120340:CDS 60.0%
CAAGGCGATGGCTATGGCAG+CGG + chr1_3:45052560-45052579 Msa0120340:CDS 60.0%
AGATAAGCACGGCGGTGCGA+CGG + chr1_3:45052586-45052605 Msa0120340:CDS 60.0%
!! GGCGGCGTCGGTTAACTCAA+CGG - chr1_3:45052616-45052635 None:intergenic 60.0%
! TATTCTAGAGGCGGCGGCGT+CGG - chr1_3:45052628-45052647 None:intergenic 60.0%
AAGCTCGGCGTCAAAGCTCG+CGG + chr1_3:45052684-45052703 Msa0120340:CDS 60.0%
! CCACAACCGGCGTCTAGAAC+CGG + chr1_3:45053329-45053348 Msa0120340:intron 60.0%
! CACAACCGGCGTCTAGAACC+GGG + chr1_3:45053330-45053349 Msa0120340:intron 60.0%
!! ACAGACCCGGTTCTAGACGC+CGG - chr1_3:45053338-45053357 None:intergenic 60.0%
CTGTTGCATCAGAGGAGCGG+AGG - chr1_3:45053390-45053409 None:intergenic 60.0%
TGATCCCGGTTGAGAGGAGG+TGG - chr1_3:45053974-45053993 None:intergenic 60.0%
CGCTGCCATAGCCATCGCCT+TGG - chr1_3:45052562-45052581 None:intergenic 65.0%
!! CCGGTTCTAGACGCCGGTTG+TGG - chr1_3:45053332-45053351 None:intergenic 65.0%
GAATCTTCCGCCCGCAGCCA+TGG + chr1_3:45054055-45054074 Msa0120340:intron 65.0%
GAAGGATCCATGGCTGCGGG+CGG - chr1_3:45054065-45054084 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 45052396 45056256 45052396 ID=Msa0120340;Name=Msa0120340
chr1_3 mRNA 45052396 45056256 45052396 ID=Msa0120340-mRNA-1;Parent=Msa0120340;Name=Msa0120340-mRNA-1;_AED=0.07;_eAED=0.07;_QI=156|1|1|1|1|1|3|314|137
chr1_3 exon 45052396 45052741 45052396 ID=Msa0120340-mRNA-1:exon:13512;Parent=Msa0120340-mRNA-1
chr1_3 exon 45052838 45052955 45052838 ID=Msa0120340-mRNA-1:exon:13513;Parent=Msa0120340-mRNA-1
chr1_3 exon 45055837 45056256 45055837 ID=Msa0120340-mRNA-1:exon:13514;Parent=Msa0120340-mRNA-1
chr1_3 five_prime_UTR 45052396 45052551 45052396 ID=Msa0120340-mRNA-1:five_prime_utr;Parent=Msa0120340-mRNA-1
chr1_3 CDS 45052552 45052741 45052552 ID=Msa0120340-mRNA-1:cds;Parent=Msa0120340-mRNA-1
chr1_3 CDS 45052838 45052955 45052838 ID=Msa0120340-mRNA-1:cds;Parent=Msa0120340-mRNA-1
chr1_3 CDS 45055837 45055942 45055837 ID=Msa0120340-mRNA-1:cds;Parent=Msa0120340-mRNA-1
chr1_3 three_prime_UTR 45055943 45056256 45055943 ID=Msa0120340-mRNA-1:three_prime_utr;Parent=Msa0120340-mRNA-1
Gene Sequence

>Msa0120340

ATGGGTTCCAAGGCGATGGCTATGGCAGCGGAGAAGATAAGCACGGCGGTGCGACGGCAAGCCGTTGAGTTAACCGACGCCGCCGCCTCTAGAATACACTTCTTGCTTCAGCAAAGGCAAAGACCGTTCTTAAAGCTCGGCGTCAAAGCTCGCGGTTGTAATGGTTTATCTTACACGCTAAATTACGCAGATAAAAAAGAGAAATTTGATGAATTGGTTGAAGATAAAGGTGTTAAGATTTTGATTGATCCTAAGGCTCTTATGCACGTTGTTGGAACCAAAATGGATTTCGTTGATGATAAACTAAGATCTGAGTTCGTTTTCATTAATCCAAACTCCAAAGGCCAATGTGGTTGTGGTGAATCTTTCATGACAAAACCAAGTACTGGAGCCTCTAAGGAAGGAAATGGTTGA

Protein sequence

>Msa0120340

MGSKAMAMAAEKISTAVRRQAVELTDAAASRIHFLLQQRQRPFLKLGVKARGCNGLSYTLNYADKKEKFDELVEDKGVKILIDPKALMHVVGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTKPSTGASKEGNG*