Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221180 | XP_003610094.1 | 97.872 | 188 | 2 | 1 | 1 | 188 | 1 | 186 | 1.24e-120 | 348 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221180 | sp|Q6GLZ8|SNR27_XENLA | 45.263 | 95 | 39 | 4 | 89 | 182 | 72 | 154 | 2.71e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221180 | G7JVD2 | 97.872 | 188 | 2 | 1 | 1 | 188 | 1 | 186 | 5.94e-121 | 348 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0426990 | Msa1221180 | -0.802105 | 6.568351e-49 | -8.615850e-47 |
| Msa0478750 | Msa1221180 | -0.807512 | 4.874768e-50 | -8.615850e-47 |
| Msa1203090 | Msa1221180 | -0.808262 | 3.377401e-50 | -8.615850e-47 |
| Msa1221180 | Msa1265510 | 0.856516 | 3.051106e-62 | -8.615850e-47 |
| Msa1221180 | Msa1361510 | 0.887549 | 1.293858e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221180 | MtrunA17_Chr4g0072231 | 97.872 | 188 | 2 | 1 | 1 | 188 | 1 | 186 | 1.14e-124 | 348 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221180 | AT5G57370.1 | 54.857 | 175 | 50 | 7 | 39 | 188 | 49 | 219 | 1.14e-41 | 140 |
Find 77 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGAGTTCATGACTTAATT+TGG | 0.231974 | 8_1:+84700768 | None:intergenic |
| CACCAACTGTTTCTGCCTTC+AGG | 0.232895 | 8_1:+84696667 | None:intergenic |
| TTTGGTGGCGGTTCAATCTT+TGG | 0.236360 | 8_1:-84696694 | Msa1221180:three_prime_UTR |
| ATGTTTAACTAATACTCTTT+AGG | 0.250935 | 8_1:-84696404 | Msa1221180:three_prime_UTR |
| TGCATATAGGTAATATCTTT+TGG | 0.274225 | 8_1:-84696712 | Msa1221180:intron |
| TGTAGGTTATGTTAGTTAGT+AGG | 0.294728 | 8_1:-84696510 | Msa1221180:three_prime_UTR |
| GTAAAACATGACAATTAAAA+AGG | 0.301208 | 8_1:+84696379 | None:intergenic |
| GGTCGCTCATGGTGGAAGAT+AGG | 0.327312 | 8_1:+84700743 | None:intergenic |
| TCGGAACGACAAACATTTGT+AGG | 0.329970 | 8_1:-84696527 | Msa1221180:three_prime_UTR |
| GGAGCAAAGATGTTTATTAC+AGG | 0.339651 | 8_1:-84700799 | Msa1221180:five_prime_UTR |
| TTCGTCTCTTTGTGTTCTTT+CGG | 0.343797 | 8_1:+84700457 | None:intergenic |
| GTAGGTTATGTTAGTTAGTA+GGG | 0.387111 | 8_1:-84696509 | Msa1221180:three_prime_UTR |
| TGACGCTTTCTCGGAGGGTC+TGG | 0.391144 | 8_1:+84700505 | None:intergenic |
| CTCTGTCGCGGTGGCGCTCA+CGG | 0.393021 | 8_1:+84700722 | None:intergenic |
| TCACGCCGGTGACGCTTTCT+CGG | 0.409946 | 8_1:+84700496 | None:intergenic |
| TTGGTGGCGGTTCAATCTTT+GGG | 0.419989 | 8_1:-84696693 | Msa1221180:three_prime_UTR |
| CTGGAGAAGGTGTACGGTGG+TGG | 0.431728 | 8_1:+84700524 | None:intergenic |
| AGAGCGGTCGACGGGAGAAC+GGG | 0.445654 | 8_1:+84700558 | None:intergenic |
| TTCTTTCGGCTCGTCATCGA+CGG | 0.449334 | 8_1:+84700471 | None:intergenic |
| CAGCAAAAGCAGAAAGAGAA+TGG | 0.458617 | 8_1:-84700388 | Msa1221180:CDS |
| GTCAGCTCGATTGAAGAGTT+AGG | 0.464960 | 8_1:+84696476 | None:intergenic |
| TTCAATCGAGCTGACTGCTT+GGG | 0.465058 | 8_1:-84696468 | Msa1221180:three_prime_UTR |
| CTTCAATCGAGCTGACTGCT+TGG | 0.469096 | 8_1:-84696469 | Msa1221180:three_prime_UTR |
| CACGGTCAGGTGAACGTGTA+CGG | 0.473082 | 8_1:+84700602 | None:intergenic |
| CCCTAGCGATTCTTCTCAGC+AGG | 0.485061 | 8_1:+84700184 | None:intergenic |
| GTGGCGCTCACGGTCGCTCA+TGG | 0.487006 | 8_1:+84700732 | None:intergenic |
| CTCTGTCACGGTCACGGTCA+CGG | 0.489950 | 8_1:+84700641 | None:intergenic |
| TGACGAGAGCGTACACGGTC+AGG | 0.504053 | 8_1:+84700589 | None:intergenic |
| ACGGTCAGGTGAACGTGTAC+GGG | 0.508514 | 8_1:+84700603 | None:intergenic |
| GTGTACGGTGGTGGCGTCGA+CGG | 0.509241 | 8_1:+84700533 | None:intergenic |
| TTAGTGGAATCAAAACCAAC+AGG | 0.512200 | 8_1:+84700310 | None:intergenic |
| GTCGCTCATGGTGGAAGATA+GGG | 0.516293 | 8_1:+84700744 | None:intergenic |
| ACCCTCCGAGAAAGCGTCAC+CGG | 0.516482 | 8_1:-84700501 | Msa1221180:CDS |
| TCTTGCTGCGTGCTCTGTCA+CGG | 0.518504 | 8_1:+84700629 | None:intergenic |
| CGATTCTTCTCAGCAGGCAA+TGG | 0.522636 | 8_1:+84700190 | None:intergenic |
| ATGTTTGATATCAATTACAT+AGG | 0.523413 | 8_1:+84696437 | None:intergenic |
| GAGGGTCTGGAGAAGGTGTA+CGG | 0.524478 | 8_1:+84700518 | None:intergenic |
| TGCGTGCTCTGTCACGGTCA+CGG | 0.525050 | 8_1:+84700635 | None:intergenic |
| CACGATCGACGTCACGGTCG+CGG | 0.530206 | 8_1:+84700671 | None:intergenic |
| GAGAGCGGTCGACGGGAGAA+CGG | 0.536449 | 8_1:+84700557 | None:intergenic |
| GATCGAGATGATGAAGATGA+TGG | 0.542072 | 8_1:-84700338 | Msa1221180:CDS |
| TTTGAAAACAACATATAATG+TGG | 0.545775 | 8_1:+84696342 | None:intergenic |
| GTGGTGTCTGACTTCGTTGA+CGG | 0.549348 | 8_1:-84700430 | Msa1221180:CDS |
| AACACCGCTGACGTCAGCAC+CGG | 0.551004 | 8_1:+84700273 | None:intergenic |
| TTTCTCGGAGGGTCTGGAGA+AGG | 0.552400 | 8_1:+84700511 | None:intergenic |
| ATATCAATTACATAGGACAT+TGG | 0.557490 | 8_1:+84696444 | None:intergenic |
| TTCGCTCTCTTTCTCTGTCG+CGG | 0.559998 | 8_1:+84700710 | None:intergenic |
| GGCAGTATATGAATCGTCGT+GGG | 0.565157 | 8_1:-84700225 | Msa1221180:CDS |
| TCAATCTTTGGGAAGCCTGA+AGG | 0.565643 | 8_1:-84696682 | Msa1221180:three_prime_UTR |
| TACACTGGACATTGAGCTGA+AGG | 0.571442 | 8_1:+84696556 | None:intergenic |
| GTGTTAGAGCTGTTACGAAA+CGG | 0.577061 | 8_1:-84700255 | Msa1221180:CDS |
| CATTGAGCTGAAGGTAGCAA+AGG | 0.579411 | 8_1:+84696565 | None:intergenic |
| GCCTGCTGAGAAGAATCGCT+AGG | 0.579705 | 8_1:-84700185 | Msa1221180:intron |
| ACACAAAGAGACGAAGAAAG+TGG | 0.583689 | 8_1:-84700449 | Msa1221180:CDS |
| CGCCGGTGACGCTTTCTCGG+AGG | 0.583974 | 8_1:+84700499 | None:intergenic |
| ATTGAGCTGAAGGTAGCAAA+GGG | 0.589137 | 8_1:+84696566 | None:intergenic |
| TCGACGGTGAGAGCGGTCGA+CGG | 0.590232 | 8_1:+84700549 | None:intergenic |
| GAGAGTGACGAGAGCGTACA+CGG | 0.596965 | 8_1:+84700584 | None:intergenic |
| GAGCAAAGATGTTTATTACA+GGG | 0.597953 | 8_1:-84700798 | Msa1221180:five_prime_UTR |
| AAGATGATGGGAATTCCTGT+TGG | 0.599922 | 8_1:-84700325 | Msa1221180:CDS |
| CGACGATTCATATACTGCCT+CGG | 0.608944 | 8_1:+84700229 | None:intergenic |
| CCTGCTGAGAAGAATCGCTA+GGG | 0.615054 | 8_1:-84700184 | Msa1221180:intron |
| TGCGATCACGATCGACGTCA+CGG | 0.615119 | 8_1:+84700665 | None:intergenic |
| ATCGAGATGATGAAGATGAT+GGG | 0.616560 | 8_1:-84700337 | Msa1221180:CDS |
| GCGCTCACGGTCGCTCATGG+TGG | 0.631908 | 8_1:+84700735 | None:intergenic |
| GGTGGCGTCGACGGTGAGAG+CGG | 0.632925 | 8_1:+84700542 | None:intergenic |
| CTGAAGGCAGAAACAGTTGG+TGG | 0.634654 | 8_1:-84696666 | Msa1221180:three_prime_UTR |
| CTTCGTTGACGGAATCGCGA+AGG | 0.638838 | 8_1:-84700419 | Msa1221180:CDS |
| AGGCAGTATATGAATCGTCG+TGG | 0.641387 | 8_1:-84700226 | Msa1221180:CDS |
| TGGTGGAAACTAAAGAAGCA+AGG | 0.647494 | 8_1:-84696649 | Msa1221180:three_prime_UTR |
| AGCCTGAAGGCAGAAACAGT+TGG | 0.648842 | 8_1:-84696669 | Msa1221180:three_prime_UTR |
| GCTCTCTTTCTCTGTCGCGG+TGG | 0.660278 | 8_1:+84700713 | None:intergenic |
| GCAGTATATGAATCGTCGTG+GGG | 0.662492 | 8_1:-84700224 | Msa1221180:CDS |
| CAGTATATGAATCGTCGTGG+GGG | 0.663384 | 8_1:-84700223 | Msa1221180:CDS |
| GGTCTGGAGAAGGTGTACGG+TGG | 0.669757 | 8_1:+84700521 | None:intergenic |
| CGTCATCGACGGAATCACGC+CGG | 0.683749 | 8_1:+84700482 | None:intergenic |
| ACTAAGGGAAAACCAGTACC+CGG | 0.686892 | 8_1:-84700292 | Msa1221180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATCTATCATAAATTA+GGG | + | chr8_1:84697040-84697059 | None:intergenic | 10.0% |
| !! | TAAATTATCTATCATAAATT+AGG | + | chr8_1:84697041-84697060 | None:intergenic | 10.0% |
| !! | AAAATTAAAAAGAAAAAAGA+AGG | + | chr8_1:84700313-84700332 | None:intergenic | 10.0% |
| !! | TAGATAATTTATGATAGATT+AGG | - | chr8_1:84697050-84697069 | Msa1221180:intron | 15.0% |
| !! | AGATAATTTATGATAGATTA+GGG | - | chr8_1:84697051-84697070 | Msa1221180:intron | 15.0% |
| !! | TTAGGAATATCAAAATAATA+TGG | - | chr8_1:84698187-84698206 | Msa1221180:intron | 15.0% |
| !! | TCTTATCATTCTGATTTATT+TGG | - | chr8_1:84697352-84697371 | Msa1221180:intron | 20.0% |
| !! | AATTTGATTGTGTTACAATA+TGG | - | chr8_1:84698071-84698090 | Msa1221180:intron | 20.0% |
| !!! | TTACCTATTTATTTAGGATA+AGG | + | chr8_1:84698166-84698185 | None:intergenic | 20.0% |
| !! | CCTAATTTACCTATTTATTT+AGG | + | chr8_1:84698172-84698191 | None:intergenic | 20.0% |
| !! | CCTAAATAAATAGGTAAATT+AGG | - | chr8_1:84698169-84698188 | Msa1221180:intron | 20.0% |
| !!! | AATGGTATATTTGTTACAAA+TGG | + | chr8_1:84698275-84698294 | None:intergenic | 20.0% |
| !! | TTACAATTAAACAAAAGAAG+TGG | - | chr8_1:84698790-84698809 | Msa1221180:intron | 20.0% |
| !! | TACAATTAAACAAAAGAAGT+GGG | - | chr8_1:84698791-84698810 | Msa1221180:intron | 20.0% |
| !!! | ATGCATTTATTTTATTTCTG+AGG | - | chr8_1:84699890-84699909 | Msa1221180:intron | 20.0% |
| !!! | ATTGCATCTTTGAAAATTTA+GGG | + | chr8_1:84700127-84700146 | None:intergenic | 20.0% |
| !!! | ATTGTGCAGAAAATATTTTA+CGG | + | chr8_1:84700384-84700403 | None:intergenic | 20.0% |
| !! | ATGTTTGATATCAATTACAT+AGG | + | chr8_1:84700724-84700743 | None:intergenic | 20.0% |
| !! | ATGTTTAACTAATACTCTTT+AGG | - | chr8_1:84700754-84700773 | Msa1221180:five_prime_UTR | 20.0% |
| !! | GTAAAACATGACAATTAAAA+AGG | + | chr8_1:84700782-84700801 | None:intergenic | 20.0% |
| ! | TTAGAGTTCATGACTTAATT+TGG | + | chr8_1:84696393-84696412 | None:intergenic | 25.0% |
| !! | GATAACCTGTTAATTTGAAT+TGG | - | chr8_1:84697197-84697216 | Msa1221180:intron | 25.0% |
| !! | TTGTGATTAGTTCAATATTG+TGG | - | chr8_1:84697280-84697299 | Msa1221180:intron | 25.0% |
| ! | GTTTATTAAGACATATCTCT+GGG | + | chr8_1:84697402-84697421 | None:intergenic | 25.0% |
| ! | TGTTTATTAAGACATATCTC+TGG | + | chr8_1:84697403-84697422 | None:intergenic | 25.0% |
| !!! | AGGTTTTCTAAAAAACATCA+AGG | + | chr8_1:84697657-84697676 | None:intergenic | 25.0% |
| ! | TTCCTAACAAATACATTTAC+AGG | + | chr8_1:84697734-84697753 | None:intergenic | 25.0% |
| !! | TGTAAATGTATTTGTTAGGA+AGG | - | chr8_1:84697733-84697752 | Msa1221180:intron | 25.0% |
| ! | AATCATAGAACGATCATTAA+GGG | - | chr8_1:84697806-84697825 | Msa1221180:intron | 25.0% |
| ! | AGTGAAAAAAGATGGAAATA+CGG | + | chr8_1:84697995-84698014 | None:intergenic | 25.0% |
| !!! | TTTCCATCTTTTTTCACTTT+TGG | - | chr8_1:84697997-84698016 | Msa1221180:intron | 25.0% |
| !!! | TTCCATCTTTTTTCACTTTT+GGG | - | chr8_1:84697998-84698017 | Msa1221180:intron | 25.0% |
| ! | ACTCCTTATCCTAAATAAAT+AGG | - | chr8_1:84698160-84698179 | Msa1221180:intron | 25.0% |
| ! | ATAATATGGAAACTAATCCT+AGG | - | chr8_1:84698201-84698220 | Msa1221180:intron | 25.0% |
| ! | AATATCTTAGATAATCTCCT+AGG | + | chr8_1:84698221-84698240 | None:intergenic | 25.0% |
| !! | GAGATTATCTAAGATATTCT+TGG | - | chr8_1:84698223-84698242 | Msa1221180:intron | 25.0% |
| ! | TGACATTAGAATAAGATTGA+AGG | + | chr8_1:84698361-84698380 | None:intergenic | 25.0% |
| ! | AATAGTAAAAAACTCCAATC+TGG | - | chr8_1:84698397-84698416 | Msa1221180:intron | 25.0% |
| ! | ATAGTAAAAAACTCCAATCT+GGG | - | chr8_1:84698398-84698417 | Msa1221180:intron | 25.0% |
| ! | TTGCTTCTATTAAGTAGTAA+AGG | + | chr8_1:84698544-84698563 | None:intergenic | 25.0% |
| ! | TCATGTGTTTATATTTGACA+AGG | + | chr8_1:84698709-84698728 | None:intergenic | 25.0% |
| ! | AAACAAAGAGGAAAAACAAA+AGG | - | chr8_1:84699090-84699109 | Msa1221180:intron | 25.0% |
| ! | AACAAAGAGGAAAAACAAAA+GGG | - | chr8_1:84699091-84699110 | Msa1221180:intron | 25.0% |
| ! | ATGATATAGAAACTAATCCT+AGG | - | chr8_1:84699376-84699395 | Msa1221180:intron | 25.0% |
| ! | TGTAGTTTATCTCATACTAT+AGG | + | chr8_1:84699426-84699445 | None:intergenic | 25.0% |
| ! | ATTTCTGTTCTGTGAAAATT+AGG | - | chr8_1:84699636-84699655 | Msa1221180:intron | 25.0% |
| ! | TTTCTGTTCTGTGAAAATTA+GGG | - | chr8_1:84699637-84699656 | Msa1221180:intron | 25.0% |
| !!! | CAATTTTAAATAAAGCATCC+AGG | + | chr8_1:84699717-84699736 | None:intergenic | 25.0% |
| !!! | CTGGATGCTTTATTTAAAAT+TGG | - | chr8_1:84699715-84699734 | Msa1221180:intron | 25.0% |
| !! | CTTTATTTAAAATTGGAGAC+TGG | - | chr8_1:84699722-84699741 | Msa1221180:intron | 25.0% |
| !!! | TTATTTCTGAGGTTTTTGTT+TGG | - | chr8_1:84699901-84699920 | Msa1221180:intron | 25.0% |
| !!! | TATTTCTGAGGTTTTTGTTT+GGG | - | chr8_1:84699902-84699921 | Msa1221180:intron | 25.0% |
| !!! | TTTAGTAAGTAGCTTTAGAA+AGG | - | chr8_1:84699936-84699955 | Msa1221180:intron | 25.0% |
| ! | AATGGAACACATATTAAACA+GGG | + | chr8_1:84700043-84700062 | None:intergenic | 25.0% |
| ! | TAATGGAACACATATTAAAC+AGG | + | chr8_1:84700044-84700063 | None:intergenic | 25.0% |
| ! | CATAGGGCTTAAAAATATAA+TGG | + | chr8_1:84700061-84700080 | None:intergenic | 25.0% |
| !! | CATTGCATCTTTGAAAATTT+AGG | + | chr8_1:84700128-84700147 | None:intergenic | 25.0% |
| ! | ATGATGCTTATGAATGAAAT+TGG | - | chr8_1:84700287-84700306 | Msa1221180:CDS | 25.0% |
| !! | TGCATATAGGTAATATCTTT+TGG | - | chr8_1:84700446-84700465 | Msa1221180:CDS | 25.0% |
| !! | ATATAGGTAATATCTTTTGG+TGG | - | chr8_1:84700449-84700468 | Msa1221180:CDS | 25.0% |
| !!! | AATGTCCAGTGTAATTTTTT+CGG | - | chr8_1:84700612-84700631 | Msa1221180:CDS | 25.0% |
| ! | ATATCAATTACATAGGACAT+TGG | + | chr8_1:84700717-84700736 | None:intergenic | 25.0% |
| GAGCAAAGATGTTTATTACA+GGG | - | chr8_1:84696360-84696379 | Msa1221180:three_prime_UTR | 30.0% | |
| GGTAAAATTGAACAAACCTT+AGG | + | chr8_1:84697019-84697038 | None:intergenic | 30.0% | |
| !!! | GAAGATTTTGACTTGCTATT+AGG | - | chr8_1:84697088-84697107 | Msa1221180:intron | 30.0% |
| !!! | TTTTGACTTGCTATTAGGTT+AGG | - | chr8_1:84697093-84697112 | Msa1221180:intron | 30.0% |
| !! | TTTGACTTGCTATTAGGTTA+GGG | - | chr8_1:84697094-84697113 | Msa1221180:intron | 30.0% |
| TAGCTCCAATTCAAATTAAC+AGG | + | chr8_1:84697205-84697224 | None:intergenic | 30.0% | |
| TGAATTGGAGCTAAAATTGT+AGG | - | chr8_1:84697212-84697231 | Msa1221180:intron | 30.0% | |
| ! | TGATTAGTTCAATATTGTGG+TGG | - | chr8_1:84697283-84697302 | Msa1221180:intron | 30.0% |
| TTCAATATTGTGGTGGTTAA+TGG | - | chr8_1:84697290-84697309 | Msa1221180:intron | 30.0% | |
| TCTTCTTCTCTAATTCATTG+TGG | - | chr8_1:84697515-84697534 | Msa1221180:intron | 30.0% | |
| CTTCTTCTCTAATTCATTGT+GGG | - | chr8_1:84697516-84697535 | Msa1221180:intron | 30.0% | |
| ! | ATCACAAAACTCTCCATTTT+GGG | + | chr8_1:84697617-84697636 | None:intergenic | 30.0% |
| GACCTGTAAATGTATTTGTT+AGG | - | chr8_1:84697729-84697748 | Msa1221180:intron | 30.0% | |
| TATGATTGTTTAGTCTCTCT+CGG | + | chr8_1:84697793-84697812 | None:intergenic | 30.0% | |
| CAATCATAGAACGATCATTA+AGG | - | chr8_1:84697805-84697824 | Msa1221180:intron | 30.0% | |
| AACGATCATTAAGGGATATT+TGG | - | chr8_1:84697814-84697833 | Msa1221180:intron | 30.0% | |
| GTGAAAAAAGATGGAAATAC+GGG | + | chr8_1:84697994-84698013 | None:intergenic | 30.0% | |
| !!! | TCCATCTTTTTTCACTTTTG+GGG | - | chr8_1:84697999-84698018 | Msa1221180:intron | 30.0% |
| !!! | TTTTTTCACTTTTGGGGAAA+TGG | - | chr8_1:84698005-84698024 | Msa1221180:intron | 30.0% |
| AAACATTAGTCCCTATGTAT+AGG | - | chr8_1:84698129-84698148 | Msa1221180:intron | 30.0% | |
| AACATTAGTCCCTATGTATA+GGG | - | chr8_1:84698130-84698149 | Msa1221180:intron | 30.0% | |
| TTACAAATGGTTTATCTCAC+AGG | + | chr8_1:84698262-84698281 | None:intergenic | 30.0% | |
| GTTACAGTTTCTCTTTCAAA+TGG | + | chr8_1:84698293-84698312 | None:intergenic | 30.0% | |
| TGAAAGAGAAACTGTAACAA+TGG | - | chr8_1:84698295-84698314 | Msa1221180:intron | 30.0% | |
| AACCAGAAAAACAAAATCCA+AGG | - | chr8_1:84698763-84698782 | Msa1221180:intron | 30.0% | |
| ACCAGAAAAACAAAATCCAA+GGG | - | chr8_1:84698764-84698783 | Msa1221180:intron | 30.0% | |
| TGTTTAATTGTAATCTCCCT+TGG | + | chr8_1:84698783-84698802 | None:intergenic | 30.0% | |
| TCAAAGCAAGACAAATCTAA+TGG | - | chr8_1:84698905-84698924 | Msa1221180:intron | 30.0% | |
| !! | TTTTTCGTGAAACTTGTTCA+CGG | - | chr8_1:84698935-84698954 | Msa1221180:intron | 30.0% |
| !! | TTTTTCCTCTTTGTTTCAGA+GGG | + | chr8_1:84699086-84699105 | None:intergenic | 30.0% |
| ! | AGAAGCTGTGAACATAATTT+TGG | + | chr8_1:84699494-84699513 | None:intergenic | 30.0% |
| TTACATAACATGTCCAAGTA+TGG | + | chr8_1:84699578-84699597 | None:intergenic | 30.0% | |
| TACTTGGACATGTTATGTAA+TGG | - | chr8_1:84699578-84699597 | Msa1221180:intron | 30.0% | |
| ATCAAAGATTTGATGTGTGT+TGG | - | chr8_1:84699608-84699627 | Msa1221180:intron | 30.0% | |
| TAGAATCAACTTATCTTTCC+TGG | - | chr8_1:84699696-84699715 | Msa1221180:intron | 30.0% | |
| TAACTGAGAGATTACATGAT+TGG | - | chr8_1:84699975-84699994 | Msa1221180:intron | 30.0% | |
| AGATTACATGATTGGCAATA+AGG | - | chr8_1:84699983-84700002 | Msa1221180:intron | 30.0% | |
| CAAGTAAAAATATCCACATC+AGG | + | chr8_1:84700158-84700177 | None:intergenic | 30.0% | |
| TTTCATTCATAAGCATCATG+TGG | + | chr8_1:84700286-84700305 | None:intergenic | 30.0% | |
| ! | TCGTAGTTTTCATTGCATAT+AGG | - | chr8_1:84700433-84700452 | Msa1221180:CDS | 30.0% |
| GTGTGTCAAAAAAAAACAAG+AGG | + | chr8_1:84700546-84700565 | None:intergenic | 30.0% | |
| TGTAGGTTATGTTAGTTAGT+AGG | - | chr8_1:84700648-84700667 | Msa1221180:CDS | 30.0% | |
| GTAGGTTATGTTAGTTAGTA+GGG | - | chr8_1:84700649-84700668 | Msa1221180:CDS | 30.0% | |
| GGAGCAAAGATGTTTATTAC+AGG | - | chr8_1:84696359-84696378 | Msa1221180:three_prime_UTR | 35.0% | |
| TTCGTCTCTTTGTGTTCTTT+CGG | + | chr8_1:84696704-84696723 | None:intergenic | 35.0% | |
| ATCGAGATGATGAAGATGAT+GGG | - | chr8_1:84696821-84696840 | Msa1221180:intron | 35.0% | |
| TTAGTGGAATCAAAACCAAC+AGG | + | chr8_1:84696851-84696870 | None:intergenic | 35.0% | |
| !!! | TGTTGGTTTTGATTCCACTA+AGG | - | chr8_1:84696850-84696869 | Msa1221180:intron | 35.0% |
| !!! | GTTGGTTTTGATTCCACTAA+GGG | - | chr8_1:84696851-84696870 | Msa1221180:intron | 35.0% |
| !! | GATTCGTTCTGTTTTTCCTA+AGG | - | chr8_1:84697000-84697019 | Msa1221180:intron | 35.0% |
| ! | GGTTAGGGTTTAGCTTAAAT+CGG | - | chr8_1:84697109-84697128 | Msa1221180:intron | 35.0% |
| GAACTAATCACAAGCTATTC+AGG | + | chr8_1:84697273-84697292 | None:intergenic | 35.0% | |
| GTTAATGGTTATCAGCATTC+TGG | - | chr8_1:84697305-84697324 | Msa1221180:intron | 35.0% | |
| TAAAAGTTGCAGATTCACTC+TGG | - | chr8_1:84697425-84697444 | Msa1221180:intron | 35.0% | |
| !! | TATTGGTGTTGTTGTACTTG+AGG | - | chr8_1:84697457-84697476 | Msa1221180:intron | 35.0% |
| ATGAATTAGAGAAGAAGACG+AGG | + | chr8_1:84697513-84697532 | None:intergenic | 35.0% | |
| AGAGAGGATGAGAAAAGTAA+AGG | + | chr8_1:84697562-84697581 | None:intergenic | 35.0% | |
| ! | ACTTTTCTCATCCTCTCTTT+TGG | - | chr8_1:84697564-84697583 | Msa1221180:intron | 35.0% |
| ! | TCACAAAACTCTCCATTTTG+GGG | + | chr8_1:84697616-84697635 | None:intergenic | 35.0% |
| ! | CATCACAAAACTCTCCATTT+TGG | + | chr8_1:84697618-84697637 | None:intergenic | 35.0% |
| CACTTTACAATCTTCTCTAC+AGG | + | chr8_1:84697677-84697696 | None:intergenic | 35.0% | |
| GTATTTCACTATTCCCCATT+TGG | + | chr8_1:84697763-84697782 | None:intergenic | 35.0% | |
| GGGAATAGTGAAATACTTAG+AGG | - | chr8_1:84697767-84697786 | Msa1221180:intron | 35.0% | |
| ATAGTTCATGACACGACTTT+AGG | - | chr8_1:84697857-84697876 | Msa1221180:intron | 35.0% | |
| TCGTCACTTGATTCATATAG+TGG | - | chr8_1:84697880-84697899 | Msa1221180:intron | 35.0% | |
| !! | ATCCTGTAGAAGGTATTGAA+TGG | - | chr8_1:84697903-84697922 | Msa1221180:intron | 35.0% |
| TTCTACTATGTTGCAAGTCA+TGG | - | chr8_1:84697951-84697970 | Msa1221180:intron | 35.0% | |
| TCCCCAAAAGTGAAAAAAGA+TGG | + | chr8_1:84698003-84698022 | None:intergenic | 35.0% | |
| GTCTTGTATCCCTATACATA+GGG | + | chr8_1:84698142-84698161 | None:intergenic | 35.0% | |
| ! | AGTCTTGTATCCCTATACAT+AGG | + | chr8_1:84698143-84698162 | None:intergenic | 35.0% |
| ! | CTTTCCTACTTGAAGCATTA+CGG | + | chr8_1:84698431-84698450 | None:intergenic | 35.0% |
| !! | GAGTTGTGGCTTTTGATTAA+TGG | + | chr8_1:84698518-84698537 | None:intergenic | 35.0% |
| TTATCTAGGCGGTTAAGATT+TGG | + | chr8_1:84698599-84698618 | None:intergenic | 35.0% | |
| ! | GGATTATCCGACAATGATTT+TGG | + | chr8_1:84698671-84698690 | None:intergenic | 35.0% |
| !!! | TCCCTTGGATTTTGTTTTTC+TGG | + | chr8_1:84698768-84698787 | None:intergenic | 35.0% |
| ATGGGTTTGAATCCTTGTTA+TGG | + | chr8_1:84698819-84698838 | None:intergenic | 35.0% | |
| AAGCAAGACAAATCTAATGG+TGG | - | chr8_1:84698908-84698927 | Msa1221180:intron | 35.0% | |
| !! | GTTTTTCCTCTTTGTTTCAG+AGG | + | chr8_1:84699087-84699106 | None:intergenic | 35.0% |
| ! | AGTCTTGTACCTCTATAAAG+GGG | + | chr8_1:84699324-84699343 | None:intergenic | 35.0% |
| ! | GAGTCTTGTACCTCTATAAA+GGG | + | chr8_1:84699325-84699344 | None:intergenic | 35.0% |
| ! | TGAGTCTTGTACCTCTATAA+AGG | + | chr8_1:84699326-84699345 | None:intergenic | 35.0% |
| CACATCTTGTATTATCTCCT+AGG | + | chr8_1:84699396-84699415 | None:intergenic | 35.0% | |
| AAAGATTTGATGTGTGTTGG+AGG | - | chr8_1:84699611-84699630 | Msa1221180:intron | 35.0% | |
| AAGATTTGATGTGTGTTGGA+GGG | - | chr8_1:84699612-84699631 | Msa1221180:intron | 35.0% | |
| AGAACAGATGTGAATTGTGA+TGG | - | chr8_1:84699780-84699799 | Msa1221180:intron | 35.0% | |
| GAACAGATGTGAATTGTGAT+GGG | - | chr8_1:84699781-84699800 | Msa1221180:intron | 35.0% | |
| AACAGATGTGAATTGTGATG+GGG | - | chr8_1:84699782-84699801 | Msa1221180:intron | 35.0% | |
| ACTACTCGAGTATAGCTAAA+AGG | + | chr8_1:84700203-84700222 | None:intergenic | 35.0% | |
| ATTCATAAGCATCATGTGGT+TGG | + | chr8_1:84700282-84700301 | None:intergenic | 35.0% | |
| ! | TAGGTAATATCTTTTGGTGG+CGG | - | chr8_1:84700452-84700471 | Msa1221180:CDS | 35.0% |
| TCGTTCCGAAAAAATTACAC+TGG | + | chr8_1:84700620-84700639 | None:intergenic | 35.0% | |
| ACACAAAGAGACGAAGAAAG+TGG | - | chr8_1:84696709-84696728 | Msa1221180:intron | 40.0% | |
| CAGCAAAAGCAGAAAGAGAA+TGG | - | chr8_1:84696770-84696789 | Msa1221180:intron | 40.0% | |
| GATCGAGATGATGAAGATGA+TGG | - | chr8_1:84696820-84696839 | Msa1221180:intron | 40.0% | |
| !! | AAGATGATGGGAATTCCTGT+TGG | - | chr8_1:84696833-84696852 | Msa1221180:intron | 40.0% |
| GTGTTAGAGCTGTTACGAAA+CGG | - | chr8_1:84696903-84696922 | Msa1221180:intron | 40.0% | |
| ! | CTCTAATTCATTGTGGGTTG+TGG | - | chr8_1:84697522-84697541 | Msa1221180:intron | 40.0% |
| ATACTTGCCATACTCAGAGT+AGG | + | chr8_1:84697590-84697609 | None:intergenic | 40.0% | |
| GGCAAGTATTATCCCCAAAA+TGG | - | chr8_1:84697601-84697620 | Msa1221180:intron | 40.0% | |
| AAGTGTCAAGCTTGAGTGAT+TGG | - | chr8_1:84697692-84697711 | Msa1221180:intron | 40.0% | |
| TGTTAGGAAGGTAGACCAAA+TGG | - | chr8_1:84697745-84697764 | Msa1221180:intron | 40.0% | |
| GTTAGGAAGGTAGACCAAAT+GGG | - | chr8_1:84697746-84697765 | Msa1221180:intron | 40.0% | |
| TTAGGAAGGTAGACCAAATG+GGG | - | chr8_1:84697747-84697766 | Msa1221180:intron | 40.0% | |
| !! | CATATAGTGGATCCTGTAGA+AGG | - | chr8_1:84697893-84697912 | Msa1221180:intron | 40.0% |
| CACCATTCAATACCTTCTAC+AGG | + | chr8_1:84697908-84697927 | None:intergenic | 40.0% | |
| !! | CTGTAGAAGGTATTGAATGG+TGG | - | chr8_1:84697906-84697925 | Msa1221180:intron | 40.0% |
| TATGTTGCAAGTCATGGTAG+TGG | - | chr8_1:84697957-84697976 | Msa1221180:intron | 40.0% | |
| ACCTGATGTACTTACTTGCT+AGG | - | chr8_1:84698326-84698345 | Msa1221180:intron | 40.0% | |
| TCCTAGCAAGTAAGTACATC+AGG | + | chr8_1:84698330-84698349 | None:intergenic | 40.0% | |
| ATTGCCGTAATGCTTCAAGT+AGG | - | chr8_1:84698424-84698443 | Msa1221180:intron | 40.0% | |
| CTTGAGAAGTTGCTTGTTCT+TGG | + | chr8_1:84698467-84698486 | None:intergenic | 40.0% | |
| CAAGAACAAGCAACTTCTCA+AGG | - | chr8_1:84698465-84698484 | Msa1221180:intron | 40.0% | |
| ! | AGTAGTAAAGGCTTGAGTTG+TGG | + | chr8_1:84698532-84698551 | None:intergenic | 40.0% |
| TTGGCAGCTAATGTCTTATG+TGG | + | chr8_1:84698580-84698599 | None:intergenic | 40.0% | |
| GTTTCAGCTTCTTATCTAGG+CGG | + | chr8_1:84698610-84698629 | None:intergenic | 40.0% | |
| CGTGTTTCAGCTTCTTATCT+AGG | + | chr8_1:84698613-84698632 | None:intergenic | 40.0% | |
| TGTCAGCTTATTCTGTAGAC+AGG | + | chr8_1:84698643-84698662 | None:intergenic | 40.0% | |
| TGTCTACAGAATAAGCTGAC+AGG | - | chr8_1:84698642-84698661 | Msa1221180:intron | 40.0% | |
| GTCTACAGAATAAGCTGACA+GGG | - | chr8_1:84698643-84698662 | Msa1221180:intron | 40.0% | |
| CAGGGAACCAAAATCATTGT+CGG | - | chr8_1:84698661-84698680 | Msa1221180:intron | 40.0% | |
| ACAAGGCTTTGCTCATAGTT+GGG | + | chr8_1:84698692-84698711 | None:intergenic | 40.0% | |
| AGGATTCAAACCCATTACCT+AGG | - | chr8_1:84698824-84698843 | Msa1221180:intron | 40.0% | |
| GGATTCAAACCCATTACCTA+GGG | - | chr8_1:84698825-84698844 | Msa1221180:intron | 40.0% | |
| AAGGATGCTTCCATAGACTT+AGG | + | chr8_1:84698851-84698870 | None:intergenic | 40.0% | |
| TGTTTCACCACTTGAGCTAT+AGG | - | chr8_1:84698872-84698891 | Msa1221180:intron | 40.0% | |
| GTTTCACCACTTGAGCTATA+GGG | - | chr8_1:84698873-84698892 | Msa1221180:intron | 40.0% | |
| AAAAGTCCCTATAGCTCAAG+TGG | + | chr8_1:84698882-84698901 | None:intergenic | 40.0% | |
| AAAACGTAGCAACCAACAGA+GGG | - | chr8_1:84699014-84699033 | Msa1221180:intron | 40.0% | |
| TCCAGTTTAATCTGCACTGT+TGG | + | chr8_1:84699046-84699065 | None:intergenic | 40.0% | |
| ! | TCTTTGTTTCAGAGGGTTAC+TGG | + | chr8_1:84699079-84699098 | None:intergenic | 40.0% |
| !! | AGTAACCCTCTGAAACAAAG+AGG | - | chr8_1:84699078-84699097 | Msa1221180:intron | 40.0% |
| !! | TTCCCAACCTTTCTGAAACT+CGG | - | chr8_1:84699151-84699170 | Msa1221180:intron | 40.0% |
| AGATCACAAAGGATCAAACC+AGG | - | chr8_1:84699194-84699213 | Msa1221180:intron | 40.0% | |
| ! | TCAACATGATATCTAGAGCC+TGG | + | chr8_1:84699215-84699234 | None:intergenic | 40.0% |
| TCTTGTACCTCTATAAAGGG+GGG | + | chr8_1:84699322-84699341 | None:intergenic | 40.0% | |
| GTCTTGTACCTCTATAAAGG+GGG | + | chr8_1:84699323-84699342 | None:intergenic | 40.0% | |
| CTGCTAGAAACAAACACCAT+CGG | - | chr8_1:84699520-84699539 | Msa1221180:intron | 40.0% | |
| ATTCTTGTCGATGCCATACT+TGG | - | chr8_1:84699562-84699581 | Msa1221180:intron | 40.0% | |
| TGATTTATTGGGTGCACTGT+TGG | - | chr8_1:84699866-84699885 | Msa1221180:intron | 40.0% | |
| GCAGAACATATCGTCTCATA+GGG | + | chr8_1:84700077-84700096 | None:intergenic | 40.0% | |
| AGCAGAACATATCGTCTCAT+AGG | + | chr8_1:84700078-84700097 | None:intergenic | 40.0% | |
| GCAATGCTAATTTCCTGATG+TGG | - | chr8_1:84700142-84700161 | Msa1221180:intron | 40.0% | |
| TTACTTGTATACGCTCACGT+TGG | - | chr8_1:84700171-84700190 | Msa1221180:intron | 40.0% | |
| TGGTGGAAACTAAAGAAGCA+AGG | - | chr8_1:84700509-84700528 | Msa1221180:CDS | 40.0% | |
| ATTGAGCTGAAGGTAGCAAA+GGG | + | chr8_1:84700595-84700614 | None:intergenic | 40.0% | |
| TCGGAACGACAAACATTTGT+AGG | - | chr8_1:84700631-84700650 | Msa1221180:CDS | 40.0% | |
| ACTAAGGGAAAACCAGTACC+CGG | - | chr8_1:84696866-84696885 | Msa1221180:intron | 45.0% | |
| CGACGATTCATATACTGCCT+CGG | + | chr8_1:84696932-84696951 | None:intergenic | 45.0% | |
| AGGCAGTATATGAATCGTCG+TGG | - | chr8_1:84696932-84696951 | Msa1221180:intron | 45.0% | |
| GGCAGTATATGAATCGTCGT+GGG | - | chr8_1:84696933-84696952 | Msa1221180:intron | 45.0% | |
| GCAGTATATGAATCGTCGTG+GGG | - | chr8_1:84696934-84696953 | Msa1221180:intron | 45.0% | |
| CAGTATATGAATCGTCGTGG+GGG | - | chr8_1:84696935-84696954 | Msa1221180:intron | 45.0% | |
| CACTCTGGCACACTCTTTAT+TGG | - | chr8_1:84697440-84697459 | Msa1221180:intron | 45.0% | |
| GAAGAAGACGAGGTGAACTA+CGG | + | chr8_1:84697503-84697522 | None:intergenic | 45.0% | |
| ! | CTTTTGGCCTACTCTGAGTA+TGG | - | chr8_1:84697580-84697599 | Msa1221180:intron | 45.0% |
| TTACGGCAATGTTCCCAGAT+TGG | + | chr8_1:84698414-84698433 | None:intergenic | 45.0% | |
| CTCAAGGCTGCTTAACCATT+TGG | - | chr8_1:84698481-84698500 | Msa1221180:intron | 45.0% | |
| ATGGTTCAGTGCTAGCCAAA+TGG | + | chr8_1:84698499-84698518 | None:intergenic | 45.0% | |
| GCAGCTAATGTCTTATGTGG+TGG | + | chr8_1:84698577-84698596 | None:intergenic | 45.0% | |
| GACAAGGCTTTGCTCATAGT+TGG | + | chr8_1:84698693-84698712 | None:intergenic | 45.0% | |
| ! | AAGAAGTGGGCTCCATAACA+AGG | - | chr8_1:84698804-84698823 | Msa1221180:intron | 45.0% |
| AGACTTAGGCCCTAGGTAAT+GGG | + | chr8_1:84698837-84698856 | None:intergenic | 45.0% | |
| TAGACTTAGGCCCTAGGTAA+TGG | + | chr8_1:84698838-84698857 | None:intergenic | 45.0% | |
| TTACCTAGGGCCTAAGTCTA+TGG | - | chr8_1:84698838-84698857 | Msa1221180:intron | 45.0% | |
| AGCTCAAGTGGTGAAACACA+AGG | + | chr8_1:84698870-84698889 | None:intergenic | 45.0% | |
| ! | TTCGTGAAACTTGTTCACGG+TGG | - | chr8_1:84698938-84698957 | Msa1221180:intron | 45.0% |
| GCCTGAAGTTATAGCTGCTA+GGG | - | chr8_1:84698982-84699001 | Msa1221180:intron | 45.0% | |
| ACCCTAGCAGCTATAACTTC+AGG | + | chr8_1:84698986-84699005 | None:intergenic | 45.0% | |
| AAGTTATAGCTGCTAGGGTG+AGG | - | chr8_1:84698987-84699006 | Msa1221180:intron | 45.0% | |
| AGTTATAGCTGCTAGGGTGA+GGG | - | chr8_1:84698988-84699007 | Msa1221180:intron | 45.0% | |
| GAAAACGTAGCAACCAACAG+AGG | - | chr8_1:84699013-84699032 | Msa1221180:intron | 45.0% | |
| GCCAACAGTGCAGATTAAAC+TGG | - | chr8_1:84699042-84699061 | Msa1221180:intron | 45.0% | |
| ACACTAACCCCCCTTTATAG+AGG | - | chr8_1:84699312-84699331 | Msa1221180:intron | 45.0% | |
| !! | GTTTGCACGCGTTGATTTCT+AGG | - | chr8_1:84700225-84700244 | Msa1221180:CDS | 45.0% |
| !! | TTTGGTGGCGGTTCAATCTT+TGG | - | chr8_1:84700464-84700483 | Msa1221180:CDS | 45.0% |
| !! | TTGGTGGCGGTTCAATCTTT+GGG | - | chr8_1:84700465-84700484 | Msa1221180:CDS | 45.0% |
| ! | TCAATCTTTGGGAAGCCTGA+AGG | - | chr8_1:84700476-84700495 | Msa1221180:CDS | 45.0% |
| CATTGAGCTGAAGGTAGCAA+AGG | + | chr8_1:84700596-84700615 | None:intergenic | 45.0% | |
| TACACTGGACATTGAGCTGA+AGG | + | chr8_1:84700605-84700624 | None:intergenic | 45.0% | |
| GTCAGCTCGATTGAAGAGTT+AGG | + | chr8_1:84700685-84700704 | None:intergenic | 45.0% | |
| TTCAATCGAGCTGACTGCTT+GGG | - | chr8_1:84700690-84700709 | Msa1221180:CDS | 45.0% | |
| !! | ATTAATTATTAATGATTTAT+TGG | - | chr8_1:84699854-84699873 | Msa1221180:intron | 5.0% |
| !! | TTAATTATTAATGATTTATT+GGG | - | chr8_1:84699855-84699874 | Msa1221180:intron | 5.0% |
| ! | GTCGCTCATGGTGGAAGATA+GGG | + | chr8_1:84696417-84696436 | None:intergenic | 50.0% |
| TTCGCTCTCTTTCTCTGTCG+CGG | + | chr8_1:84696451-84696470 | None:intergenic | 50.0% | |
| ! | TTCTTTCGGCTCGTCATCGA+CGG | + | chr8_1:84696690-84696709 | None:intergenic | 50.0% |
| GTGGTGTCTGACTTCGTTGA+CGG | - | chr8_1:84696728-84696747 | Msa1221180:intron | 50.0% | |
| !!! | GGGTACTGGTTTTCCCTTAG+TGG | + | chr8_1:84696867-84696886 | None:intergenic | 50.0% |
| CGATTCTTCTCAGCAGGCAA+TGG | + | chr8_1:84696971-84696990 | None:intergenic | 50.0% | |
| CCTGCTGAGAAGAATCGCTA+GGG | - | chr8_1:84696974-84696993 | Msa1221180:intron | 50.0% | |
| ! | TGTGGGTTGTGGTTGCTGTT+TGG | - | chr8_1:84697533-84697552 | Msa1221180:intron | 50.0% |
| CTCAGAGTAGGCCAAAAGAG+AGG | + | chr8_1:84697578-84697597 | None:intergenic | 50.0% | |
| CTTCCATAGACTTAGGCCCT+AGG | + | chr8_1:84698844-84698863 | None:intergenic | 50.0% | |
| ! | GTGAAACTTGTTCACGGTGG+CGG | - | chr8_1:84698941-84698960 | Msa1221180:intron | 50.0% |
| GGCCTGAAGTTATAGCTGCT+AGG | - | chr8_1:84698981-84699000 | Msa1221180:intron | 50.0% | |
| CGCCGAGTTTCAGAAAGGTT+GGG | + | chr8_1:84699156-84699175 | None:intergenic | 50.0% | |
| !! | CCAACCTTTCTGAAACTCGG+CGG | - | chr8_1:84699154-84699173 | Msa1221180:intron | 50.0% |
| ! | AGTGACGGGACAGATCACAA+AGG | - | chr8_1:84699183-84699202 | Msa1221180:intron | 50.0% |
| ACAAACACCATCGGATGCGT+AGG | - | chr8_1:84699529-84699548 | Msa1221180:intron | 50.0% | |
| AGCCTGAAGGCAGAAACAGT+TGG | - | chr8_1:84700489-84700508 | Msa1221180:CDS | 50.0% | |
| !! | CACCAACTGTTTCTGCCTTC+AGG | + | chr8_1:84700494-84700513 | None:intergenic | 50.0% |
| CTGAAGGCAGAAACAGTTGG+TGG | - | chr8_1:84700492-84700511 | Msa1221180:CDS | 50.0% | |
| CTTCAATCGAGCTGACTGCT+TGG | - | chr8_1:84700689-84700708 | Msa1221180:CDS | 50.0% | |
| ! | GGTCGCTCATGGTGGAAGAT+AGG | + | chr8_1:84696418-84696437 | None:intergenic | 55.0% |
| TGCGATCACGATCGACGTCA+CGG | + | chr8_1:84696496-84696515 | None:intergenic | 55.0% | |
| TCTTGCTGCGTGCTCTGTCA+CGG | + | chr8_1:84696532-84696551 | None:intergenic | 55.0% | |
| ACGGTCAGGTGAACGTGTAC+GGG | + | chr8_1:84696558-84696577 | None:intergenic | 55.0% | |
| CACGGTCAGGTGAACGTGTA+CGG | + | chr8_1:84696559-84696578 | None:intergenic | 55.0% | |
| ! | GAGAGTGACGAGAGCGTACA+CGG | + | chr8_1:84696577-84696596 | None:intergenic | 55.0% |
| ! | GAGGGTCTGGAGAAGGTGTA+CGG | + | chr8_1:84696643-84696662 | None:intergenic | 55.0% |
| TTTCTCGGAGGGTCTGGAGA+AGG | + | chr8_1:84696650-84696669 | None:intergenic | 55.0% | |
| CTTCGTTGACGGAATCGCGA+AGG | - | chr8_1:84696739-84696758 | Msa1221180:intron | 55.0% | |
| GCCTGCTGAGAAGAATCGCT+AGG | - | chr8_1:84696973-84696992 | Msa1221180:intron | 55.0% | |
| CCCTAGCGATTCTTCTCAGC+AGG | + | chr8_1:84696977-84696996 | None:intergenic | 55.0% | |
| GAAGACGAGGTGAACTACGG+AGG | + | chr8_1:84697500-84697519 | None:intergenic | 55.0% | |
| ACGTAGCAACCAACAGAGGG+AGG | - | chr8_1:84699017-84699036 | Msa1221180:intron | 55.0% | |
| !! | TGTTGGCTTCCTCCCTCTGT+TGG | + | chr8_1:84699029-84699048 | None:intergenic | 55.0% |
| CCGCCGAGTTTCAGAAAGGT+TGG | + | chr8_1:84699157-84699176 | None:intergenic | 55.0% | |
| !! | ACCTTTCTGAAACTCGGCGG+TGG | - | chr8_1:84699157-84699176 | Msa1221180:intron | 55.0% |
| TCCACCGCCGAGTTTCAGAA+AGG | + | chr8_1:84699161-84699180 | None:intergenic | 55.0% | |
| ACTCGGCGGTGGAATAGTGA+CGG | - | chr8_1:84699168-84699187 | Msa1221180:intron | 55.0% | |
| GCTCTCTTTCTCTGTCGCGG+TGG | + | chr8_1:84696448-84696467 | None:intergenic | 60.0% | |
| CTCTGTCACGGTCACGGTCA+CGG | + | chr8_1:84696520-84696539 | None:intergenic | 60.0% | |
| TGCGTGCTCTGTCACGGTCA+CGG | + | chr8_1:84696526-84696545 | None:intergenic | 60.0% | |
| ! | TGACGAGAGCGTACACGGTC+AGG | + | chr8_1:84696572-84696591 | None:intergenic | 60.0% |
| ! | CTGGAGAAGGTGTACGGTGG+TGG | + | chr8_1:84696637-84696656 | None:intergenic | 60.0% |
| ! | GGTCTGGAGAAGGTGTACGG+TGG | + | chr8_1:84696640-84696659 | None:intergenic | 60.0% |
| TGACGCTTTCTCGGAGGGTC+TGG | + | chr8_1:84696656-84696675 | None:intergenic | 60.0% | |
| !! | ACCCTCCGAGAAAGCGTCAC+CGG | - | chr8_1:84696657-84696676 | Msa1221180:three_prime_UTR | 60.0% |
| TCACGCCGGTGACGCTTTCT+CGG | + | chr8_1:84696665-84696684 | None:intergenic | 60.0% | |
| CGTCATCGACGGAATCACGC+CGG | + | chr8_1:84696679-84696698 | None:intergenic | 60.0% | |
| AACACCGCTGACGTCAGCAC+CGG | + | chr8_1:84696888-84696907 | None:intergenic | 60.0% | |
| CTGTTACGAAACGGCAGCCG+AGG | - | chr8_1:84696912-84696931 | Msa1221180:intron | 60.0% | |
| GACGAGGTGAACTACGGAGG+AGG | + | chr8_1:84697497-84697516 | None:intergenic | 60.0% | |
| ! | AACTTGTTCACGGTGGCGGC+CGG | - | chr8_1:84698945-84698964 | Msa1221180:intron | 60.0% |
| CTCGGCGGTGGAATAGTGAC+GGG | - | chr8_1:84699169-84699188 | Msa1221180:intron | 60.0% | |
| ACACCATCGGATGCGTAGGC+TGG | - | chr8_1:84699533-84699552 | Msa1221180:intron | 60.0% | |
| TCACCAGCCTACGCATCCGA+TGG | + | chr8_1:84699539-84699558 | None:intergenic | 60.0% | |
| CACGATCGACGTCACGGTCG+CGG | + | chr8_1:84696490-84696509 | None:intergenic | 65.0% | |
| AGAGCGGTCGACGGGAGAAC+GGG | + | chr8_1:84696603-84696622 | None:intergenic | 65.0% | |
| GAGAGCGGTCGACGGGAGAA+CGG | + | chr8_1:84696604-84696623 | None:intergenic | 65.0% | |
| TCGACGGTGAGAGCGGTCGA+CGG | + | chr8_1:84696612-84696631 | None:intergenic | 65.0% | |
| ! | GTGTACGGTGGTGGCGTCGA+CGG | + | chr8_1:84696628-84696647 | None:intergenic | 65.0% |
| GCCGGTGACGCTTTCTCGGA+GGG | + | chr8_1:84696661-84696680 | None:intergenic | 65.0% | |
| ! | CTGACGTCAGCACCGGGTAC+TGG | + | chr8_1:84696881-84696900 | None:intergenic | 65.0% |
| !! | GTACCCGGTGCTGACGTCAG+CGG | - | chr8_1:84696881-84696900 | Msa1221180:intron | 65.0% |
| ACACCGCTGACGTCAGCACC+GGG | + | chr8_1:84696887-84696906 | None:intergenic | 65.0% | |
| GCGCTCACGGTCGCTCATGG+TGG | + | chr8_1:84696426-84696445 | None:intergenic | 70.0% | |
| GTGGCGCTCACGGTCGCTCA+TGG | + | chr8_1:84696429-84696448 | None:intergenic | 70.0% | |
| CTCTGTCGCGGTGGCGCTCA+CGG | + | chr8_1:84696439-84696458 | None:intergenic | 70.0% | |
| CGACGGTGAGAGCGGTCGAC+GGG | + | chr8_1:84696611-84696630 | None:intergenic | 70.0% | |
| !! | GGTGGCGTCGACGGTGAGAG+CGG | + | chr8_1:84696619-84696638 | None:intergenic | 70.0% |
| CGCCGGTGACGCTTTCTCGG+AGG | + | chr8_1:84696662-84696681 | None:intergenic | 70.0% | |
| ! | TTGTTCACGGTGGCGGCCGG+CGG | - | chr8_1:84698948-84698967 | Msa1221180:intron | 70.0% |
| CAGGCCACCATCACCACCGC+CGG | + | chr8_1:84698967-84698986 | None:intergenic | 70.0% | |
| !! | TTCACGGTGGCGGCCGGCGG+TGG | - | chr8_1:84698951-84698970 | Msa1221180:intron | 80.0% |
| ! | GTGGCGGCCGGCGGTGGTGA+TGG | - | chr8_1:84698957-84698976 | Msa1221180:intron | 80.0% |
| !!! | GCGGCCGGCGGTGGTGATGG+TGG | - | chr8_1:84698960-84698979 | Msa1221180:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 84696347 | 84700833 | 84696347 | ID=Msa1221180;Name=Msa1221180 |
| chr8_1 | mRNA | 84696347 | 84700833 | 84696347 | ID=Msa1221180-mRNA-1;Parent=Msa1221180;Name=Msa1221180-mRNA-1;_AED=0.01;_eAED=0.01;_QI=81|0|0.5|1|0|0.5|2|379|188 |
| chr8_1 | exon | 84696347 | 84696725 | 84696347 | ID=Msa1221180-mRNA-1:exon:30456;Parent=Msa1221180-mRNA-1 |
| chr8_1 | exon | 84700186 | 84700833 | 84700186 | ID=Msa1221180-mRNA-1:exon:30455;Parent=Msa1221180-mRNA-1 |
| chr8_1 | five_prime_UTR | 84700753 | 84700833 | 84700753 | ID=Msa1221180-mRNA-1:five_prime_utr;Parent=Msa1221180-mRNA-1 |
| chr8_1 | CDS | 84700186 | 84700752 | 84700186 | ID=Msa1221180-mRNA-1:cds;Parent=Msa1221180-mRNA-1 |
| chr8_1 | three_prime_UTR | 84696347 | 84696725 | 84696347 | ID=Msa1221180-mRNA-1:three_prime_utr;Parent=Msa1221180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
