AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1203090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1203090 MtrunA17_Chr8g0373601 92.225 373 5 3 1 350 1 372 0.0 685
Msa1203090 MtrunA17_Chr5g0403581 67.802 323 84 1 48 350 49 371 1.38e-157 446
Msa1203090 MtrunA17_Chr8g0375771 36.313 358 198 10 9 344 93 442 1.33e-69 224
Msa1203090 MtrunA17_Chr5g0444251 32.212 208 132 2 90 293 54 256 2.81e-24 100
Msa1203090 MtrunA17_Chr2g0313871 32.530 249 128 8 90 311 113 348 2.53e-22 97.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1203090 AT4G36810.1 65.775 374 101 6 1 350 1 371 3.60e-166 468
Msa1203090 AT2G18620.1 67.059 340 86 4 36 350 9 347 1.43e-155 441
Msa1203090 AT2G18640.1 63.176 296 85 3 77 350 79 372 7.93e-132 381
Msa1203090 AT2G23800.1 62.542 299 88 3 74 350 80 376 6.53e-130 377
Msa1203090 AT3G20160.1 60.535 299 91 5 77 350 48 344 1.10e-123 359
Msa1203090 AT3G14550.3 61.947 339 98 6 42 350 23 360 3.31e-123 359
Msa1203090 AT3G14550.1 61.947 339 98 6 42 350 23 360 3.31e-123 359
Msa1203090 AT3G14550.2 61.947 339 98 6 42 350 23 360 3.31e-123 359
Msa1203090 AT3G14530.1 60.472 339 103 6 42 350 23 360 2.51e-121 354
Msa1203090 AT3G29430.1 64.918 305 84 3 69 350 53 357 1.90e-120 352
Msa1203090 AT3G14510.1 66.065 277 71 3 97 350 8 284 1.77e-119 347
Msa1203090 AT3G32040.1 63.607 305 88 3 69 350 56 360 1.17e-117 345
Msa1203090 AT1G49530.1 54.426 305 106 5 79 350 32 336 4.46e-106 314
Msa1203090 AT3G20160.2 54.730 296 85 5 77 350 48 316 5.31e-105 311
Msa1203090 AT4G38460.1 46.296 216 107 3 77 289 45 254 2.06e-64 207
Msa1203090 AT1G78510.2 30.702 228 121 6 116 317 84 300 3.90e-19 87.8
Msa1203090 AT1G78510.1 30.702 228 121 6 116 317 123 339 7.22e-19 87.4
Msa1203090 AT1G17050.1 26.866 335 202 11 14 317 28 350 1.18e-18 87.0

Find 69 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCTAATTACATTGCTTAT+AGG 0.225968 8_1:-56930376 Msa1203090:CDS
GATGCACAAGAACAACTTTC+TGG 0.227841 8_1:-56930434 Msa1203090:CDS
TTAGAAGGTGCTGTTGTTCT+TGG 0.252595 8_1:-56930780 Msa1203090:CDS
TGAAACTGAAATGGGTATTT+TGG 0.254823 8_1:+56931448 None:intergenic
CCGAAGACTTTGTGGTTTGT+AGG 0.273097 8_1:+56931041 None:intergenic
AACTTGATTGAACATGAAAT+TGG 0.287751 8_1:+56931523 None:intergenic
GTTGTTCTTGGTGCAATATT+AGG 0.288632 8_1:-56930768 Msa1203090:CDS
CGAAAATTCGCGAGATATAT+CGG 0.296068 8_1:-56930714 Msa1203090:intron
ATCTGCTCCTTTGATTGCTT+TGG 0.315020 8_1:-56930396 Msa1203090:CDS
AAAACTGCGGCTTTGTTAGA+AGG 0.342543 8_1:-56930795 Msa1203090:CDS
CGTCTTCTCCGAAGACTTTG+TGG 0.343711 8_1:+56931033 None:intergenic
AAAATAGAAAGATGGGATTC+TGG 0.344376 8_1:+56931472 None:intergenic
TAATGAAACGGCGTCGTCTA+AGG 0.368203 8_1:+56931280 None:intergenic
GGCTCGGAAGGACTCGTTGC+TGG 0.376904 8_1:-56930891 Msa1203090:CDS
GAAAGATTTGGTAGCTGATA+AGG 0.381248 8_1:-56930519 Msa1203090:CDS
TAGGATTTGAAATTGAAGAT+TGG 0.396930 8_1:+56931335 None:intergenic
AGGATTTGAAATTGAAGATT+GGG 0.398523 8_1:+56931336 None:intergenic
CCACGACGACCTTCCTTGTA+TGG 0.400090 8_1:-56931090 Msa1203090:CDS
TTTAATGGGTGAAACTGAAA+TGG 0.414231 8_1:+56931439 None:intergenic
CAGGCGGCCGGCATCGCCAT+CGG 0.414541 8_1:+56931146 None:intergenic
GGCCGGCATCGCCATCGGTT+CGG 0.427454 8_1:+56931151 None:intergenic
GAAAGATGGGATTCTGGATC+TGG 0.430542 8_1:+56931478 None:intergenic
ATTTCAACGGCGCAGGCGGC+CGG 0.436594 8_1:+56931134 None:intergenic
ATGCACAAGAACAACTTTCT+GGG 0.437672 8_1:-56930433 Msa1203090:CDS
GAAAACTGCTGGGAAAGATT+TGG 0.439022 8_1:-56930531 Msa1203090:CDS
GCGAGAATTGTCCGTGCAAT+CGG 0.446559 8_1:-56930933 Msa1203090:CDS
TAACGGTTCGCGTAATGAAA+CGG 0.452982 8_1:+56931268 None:intergenic
AACCGAACCGATGGCGATGC+CGG 0.457738 8_1:-56931153 Msa1203090:CDS
TCGCCGGCGGAAAACGTGTC+AGG 0.458070 8_1:-56931214 Msa1203090:CDS
CCTACAAACCACAAAGTCTT+CGG 0.467203 8_1:-56931041 Msa1203090:CDS
GGTGAATTAGCAAAATCAAT+TGG 0.470164 8_1:-56930912 Msa1203090:CDS
CGCCGGAGAAACACCGGCGG+TGG 0.473224 8_1:+56930953 None:intergenic
CTCCACCGCCGGTGTTTCTC+CGG 0.475973 8_1:-56930955 Msa1203090:CDS
AAAAGCGAGAAGAGCGTCAC+CGG 0.482767 8_1:+56930998 None:intergenic
GTATGGATAACGACGATCTC+CGG 0.512700 8_1:-56931073 Msa1203090:CDS
TTGCTAATTCACCGATTGCA+CGG 0.521598 8_1:+56930922 None:intergenic
CAGGCGGCTAAACAGAGAAC+TGG 0.522019 8_1:+56931191 None:intergenic
GTGGATCATTTCAACGGCGC+AGG 0.524802 8_1:+56931127 None:intergenic
GGTTCCGCCGACGAGTTCGC+AGG 0.527687 8_1:+56931172 None:intergenic
TCAGAAGGTTTATCCGATGT+TGG 0.530197 8_1:-56930849 Msa1203090:CDS
GCAAAATCAATTGGCTCGGA+AGG 0.538303 8_1:-56930903 Msa1203090:CDS
GGTTTGTAGGTTTACCTCGC+CGG 0.539958 8_1:+56931054 None:intergenic
TTAATGGGTGAAACTGAAAT+GGG 0.544577 8_1:+56931440 None:intergenic
GTTGTTGATATCAACTCAGA+AGG 0.546305 8_1:-56930864 Msa1203090:CDS
GATCATTTCAACGGCGCAGG+CGG 0.547898 8_1:+56931130 None:intergenic
CATATCGCTGTCTCCACCGC+CGG 0.579244 8_1:-56930966 Msa1203090:CDS
AATTCTCGCCGGAGAAACAC+CGG 0.583236 8_1:+56930947 None:intergenic
ATTAGCAAAATCAATTGGCT+CGG 0.586837 8_1:-56930907 Msa1203090:CDS
GAAGACGTTGCTGTTCTCGC+CGG 0.587256 8_1:-56931017 Msa1203090:CDS
AAAGTTGTTCTTGTGCATCA+CGG 0.594174 8_1:+56930438 None:intergenic
CATCGTGTGGATCATTTCAA+CGG 0.597412 8_1:+56931121 None:intergenic
AGATCGTCGTTATCCATACA+AGG 0.598288 8_1:+56931077 None:intergenic
ATGCGTTACTCTCTCCTCGC+CGG 0.606596 8_1:-56931230 Msa1203090:CDS
TAATTAGCCAAAGCAATCAA+AGG 0.617462 8_1:+56930389 None:intergenic
GCCGCCTGCGAACTCGTCGG+CGG 0.623082 8_1:-56931176 Msa1203090:CDS
GTTCTTGGTGCAATATTAGG+TGG 0.624578 8_1:-56930765 Msa1203090:CDS
CTTGGTGCAATATTAGGTGG+TGG 0.625172 8_1:-56930762 Msa1203090:CDS
CGTCGTTATCCATACAAGGA+AGG 0.629409 8_1:+56931081 None:intergenic
CATTCATCTGCATAAAACTG+CGG 0.633100 8_1:-56930808 Msa1203090:CDS
TCCGCCGACGAGTTCGCAGG+CGG 0.634828 8_1:+56931175 None:intergenic
CGTTACTCTCTCCTCGCCGG+CGG 0.638430 8_1:-56931227 Msa1203090:CDS
TTAGCCGCCTGCGAACTCGT+CGG 0.642109 8_1:-56931179 Msa1203090:CDS
CCATACAAGGAAGGTCGTCG+TGG 0.653424 8_1:+56931090 None:intergenic
AAGCTGTTCGAGTCCAACAT+CGG 0.661724 8_1:+56930836 None:intergenic
CGTGGATTAGAGACATCGTG+TGG 0.678617 8_1:+56931108 None:intergenic
ATTGCACGGACAATTCTCGC+CGG 0.689391 8_1:+56930936 None:intergenic
GATAACGACGATCTCCGGCG+AGG 0.695961 8_1:-56931068 Msa1203090:CDS
GTGCTGTGAATCTTAACACA+TGG 0.731215 8_1:-56931553 Msa1203090:CDS
TCTCGCCGGAGAAACACCGG+CGG 0.762110 8_1:+56930950 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGGTAAAATAGAAAGAT+GGG + chr8_1:56930462-56930481 None:intergenic 20.0%
!!! ATTTTGGTAAAATAGAAAGA+TGG + chr8_1:56930463-56930482 None:intergenic 20.0%
!!! TTTTGGTAAAATAGAAAGAT+GGG + chr8_1:56930462-56930481 None:intergenic 20.0%
!!! ATTTTGGTAAAATAGAAAGA+TGG + chr8_1:56930463-56930482 None:intergenic 20.0%
! AACTTGATTGAACATGAAAT+TGG + chr8_1:56930404-56930423 None:intergenic 25.0%
! GAAACAGAAAAAGAAGAATT+GGG + chr8_1:56930523-56930542 None:intergenic 25.0%
! TGAAACAGAAAAAGAAGAAT+TGG + chr8_1:56930524-56930543 None:intergenic 25.0%
!! AGGATTTGAAATTGAAGATT+GGG + chr8_1:56930591-56930610 None:intergenic 25.0%
!! TAGGATTTGAAATTGAAGAT+TGG + chr8_1:56930592-56930611 None:intergenic 25.0%
!!! ATATATCGGTTTATTGTTTC+AGG - chr8_1:56931224-56931243 Msa1203090:CDS 25.0%
!! TTTTCAATTCCTAAAAGCTT+AGG + chr8_1:56931439-56931458 None:intergenic 25.0%
! AACTTGATTGAACATGAAAT+TGG + chr8_1:56930404-56930423 None:intergenic 25.0%
! GAAACAGAAAAAGAAGAATT+GGG + chr8_1:56930523-56930542 None:intergenic 25.0%
! TGAAACAGAAAAAGAAGAAT+TGG + chr8_1:56930524-56930543 None:intergenic 25.0%
!! AGGATTTGAAATTGAAGATT+GGG + chr8_1:56930591-56930610 None:intergenic 25.0%
!! TAGGATTTGAAATTGAAGAT+TGG + chr8_1:56930592-56930611 None:intergenic 25.0%
!!! ATATATCGGTTTATTGTTTC+AGG - chr8_1:56931224-56931243 Msa1203090:CDS 25.0%
!! TTTTCAATTCCTAAAAGCTT+AGG + chr8_1:56931439-56931458 None:intergenic 25.0%
AAAATAGAAAGATGGGATTC+TGG + chr8_1:56930455-56930474 None:intergenic 30.0%
! TGAAACTGAAATGGGTATTT+TGG + chr8_1:56930479-56930498 None:intergenic 30.0%
! TTAATGGGTGAAACTGAAAT+GGG + chr8_1:56930487-56930506 None:intergenic 30.0%
! TTTAATGGGTGAAACTGAAA+TGG + chr8_1:56930488-56930507 None:intergenic 30.0%
!!! GGTTTTGATGATGGTTTAAT+GGG + chr8_1:56930502-56930521 None:intergenic 30.0%
! TTTTGTTCTTCTGCTTCTAT+TGG + chr8_1:56930568-56930587 None:intergenic 30.0%
!!! AGTTGCTTTTTCTATCATGT+AGG + chr8_1:56930611-56930630 None:intergenic 30.0%
ACATGATAGAAAAAGCAACT+AGG - chr8_1:56930611-56930630 Msa1203090:intron 30.0%
CATGATAGAAAAAGCAACTA+GGG - chr8_1:56930612-56930631 Msa1203090:intron 30.0%
GGTGAATTAGCAAAATCAAT+TGG - chr8_1:56931012-56931031 Msa1203090:CDS 30.0%
ATTAGCAAAATCAATTGGCT+CGG - chr8_1:56931017-56931036 Msa1203090:CDS 30.0%
! GTTACTTATCCTAAGCTTTT+AGG - chr8_1:56931427-56931446 Msa1203090:CDS 30.0%
TAATTAGCCAAAGCAATCAA+AGG + chr8_1:56931538-56931557 None:intergenic 30.0%
TGGCTAATTACATTGCTTAT+AGG - chr8_1:56931548-56931567 Msa1203090:CDS 30.0%
AAAATAGAAAGATGGGATTC+TGG + chr8_1:56930455-56930474 None:intergenic 30.0%
! TGAAACTGAAATGGGTATTT+TGG + chr8_1:56930479-56930498 None:intergenic 30.0%
! TTAATGGGTGAAACTGAAAT+GGG + chr8_1:56930487-56930506 None:intergenic 30.0%
! TTTAATGGGTGAAACTGAAA+TGG + chr8_1:56930488-56930507 None:intergenic 30.0%
!!! GGTTTTGATGATGGTTTAAT+GGG + chr8_1:56930502-56930521 None:intergenic 30.0%
! TTTTGTTCTTCTGCTTCTAT+TGG + chr8_1:56930568-56930587 None:intergenic 30.0%
!!! AGTTGCTTTTTCTATCATGT+AGG + chr8_1:56930611-56930630 None:intergenic 30.0%
ACATGATAGAAAAAGCAACT+AGG - chr8_1:56930611-56930630 Msa1203090:intron 30.0%
CATGATAGAAAAAGCAACTA+GGG - chr8_1:56930612-56930631 Msa1203090:intron 30.0%
GGTGAATTAGCAAAATCAAT+TGG - chr8_1:56931012-56931031 Msa1203090:CDS 30.0%
ATTAGCAAAATCAATTGGCT+CGG - chr8_1:56931017-56931036 Msa1203090:CDS 30.0%
! GTTACTTATCCTAAGCTTTT+AGG - chr8_1:56931427-56931446 Msa1203090:CDS 30.0%
TAATTAGCCAAAGCAATCAA+AGG + chr8_1:56931538-56931557 None:intergenic 30.0%
TGGCTAATTACATTGCTTAT+AGG - chr8_1:56931548-56931567 Msa1203090:CDS 30.0%
!!! GGGTTTTGATGATGGTTTAA+TGG + chr8_1:56930503-56930522 None:intergenic 35.0%
!! GAAGAATTGGGTTTTGATGA+TGG + chr8_1:56930511-56930530 None:intergenic 35.0%
! ATCGCTTCGTGAACTTTTAA+CGG + chr8_1:56930676-56930695 None:intergenic 35.0%
GTTGTTGATATCAACTCAGA+AGG - chr8_1:56931060-56931079 Msa1203090:CDS 35.0%
CATTCATCTGCATAAAACTG+CGG - chr8_1:56931116-56931135 Msa1203090:CDS 35.0%
! GTTGTTCTTGGTGCAATATT+AGG - chr8_1:56931156-56931175 Msa1203090:CDS 35.0%
CGAAAATTCGCGAGATATAT+CGG - chr8_1:56931210-56931229 Msa1203090:CDS 35.0%
! GAAAGATTTGGTAGCTGATA+AGG - chr8_1:56931405-56931424 Msa1203090:CDS 35.0%
AAAGTTGTTCTTGTGCATCA+CGG + chr8_1:56931489-56931508 None:intergenic 35.0%
ATGCACAAGAACAACTTTCT+GGG - chr8_1:56931491-56931510 Msa1203090:CDS 35.0%
!!! GGGTTTTGATGATGGTTTAA+TGG + chr8_1:56930503-56930522 None:intergenic 35.0%
!! GAAGAATTGGGTTTTGATGA+TGG + chr8_1:56930511-56930530 None:intergenic 35.0%
! ATCGCTTCGTGAACTTTTAA+CGG + chr8_1:56930676-56930695 None:intergenic 35.0%
GTTGTTGATATCAACTCAGA+AGG - chr8_1:56931060-56931079 Msa1203090:CDS 35.0%
CATTCATCTGCATAAAACTG+CGG - chr8_1:56931116-56931135 Msa1203090:CDS 35.0%
! GTTGTTCTTGGTGCAATATT+AGG - chr8_1:56931156-56931175 Msa1203090:CDS 35.0%
CGAAAATTCGCGAGATATAT+CGG - chr8_1:56931210-56931229 Msa1203090:CDS 35.0%
! GAAAGATTTGGTAGCTGATA+AGG - chr8_1:56931405-56931424 Msa1203090:CDS 35.0%
AAAGTTGTTCTTGTGCATCA+CGG + chr8_1:56931489-56931508 None:intergenic 35.0%
ATGCACAAGAACAACTTTCT+GGG - chr8_1:56931491-56931510 Msa1203090:CDS 35.0%
GTGCTGTGAATCTTAACACA+TGG - chr8_1:56930371-56930390 Msa1203090:CDS 40.0%
TAACGGTTCGCGTAATGAAA+CGG + chr8_1:56930659-56930678 None:intergenic 40.0%
CATCGTGTGGATCATTTCAA+CGG + chr8_1:56930806-56930825 None:intergenic 40.0%
AGATCGTCGTTATCCATACA+AGG + chr8_1:56930850-56930869 None:intergenic 40.0%
CCTACAAACCACAAAGTCTT+CGG - chr8_1:56930883-56930902 Msa1203090:CDS 40.0%
! TTGCTAATTCACCGATTGCA+CGG + chr8_1:56931005-56931024 None:intergenic 40.0%
TCAGAAGGTTTATCCGATGT+TGG - chr8_1:56931075-56931094 Msa1203090:CDS 40.0%
!! AAAACTGCGGCTTTGTTAGA+AGG - chr8_1:56931129-56931148 Msa1203090:CDS 40.0%
!! TTAGAAGGTGCTGTTGTTCT+TGG - chr8_1:56931144-56931163 Msa1203090:CDS 40.0%
! GTTCTTGGTGCAATATTAGG+TGG - chr8_1:56931159-56931178 Msa1203090:CDS 40.0%
GAAAACTGCTGGGAAAGATT+TGG - chr8_1:56931393-56931412 Msa1203090:CDS 40.0%
GATGCACAAGAACAACTTTC+TGG - chr8_1:56931490-56931509 Msa1203090:CDS 40.0%
ATCTGCTCCTTTGATTGCTT+TGG - chr8_1:56931528-56931547 Msa1203090:CDS 40.0%
GTGCTGTGAATCTTAACACA+TGG - chr8_1:56930371-56930390 Msa1203090:CDS 40.0%
TAACGGTTCGCGTAATGAAA+CGG + chr8_1:56930659-56930678 None:intergenic 40.0%
CATCGTGTGGATCATTTCAA+CGG + chr8_1:56930806-56930825 None:intergenic 40.0%
AGATCGTCGTTATCCATACA+AGG + chr8_1:56930850-56930869 None:intergenic 40.0%
CCTACAAACCACAAAGTCTT+CGG - chr8_1:56930883-56930902 Msa1203090:CDS 40.0%
! TTGCTAATTCACCGATTGCA+CGG + chr8_1:56931005-56931024 None:intergenic 40.0%
TCAGAAGGTTTATCCGATGT+TGG - chr8_1:56931075-56931094 Msa1203090:CDS 40.0%
!! AAAACTGCGGCTTTGTTAGA+AGG - chr8_1:56931129-56931148 Msa1203090:CDS 40.0%
!! TTAGAAGGTGCTGTTGTTCT+TGG - chr8_1:56931144-56931163 Msa1203090:CDS 40.0%
! GTTCTTGGTGCAATATTAGG+TGG - chr8_1:56931159-56931178 Msa1203090:CDS 40.0%
GAAAACTGCTGGGAAAGATT+TGG - chr8_1:56931393-56931412 Msa1203090:CDS 40.0%
GATGCACAAGAACAACTTTC+TGG - chr8_1:56931490-56931509 Msa1203090:CDS 40.0%
ATCTGCTCCTTTGATTGCTT+TGG - chr8_1:56931528-56931547 Msa1203090:CDS 40.0%
GAAAGATGGGATTCTGGATC+TGG + chr8_1:56930449-56930468 None:intergenic 45.0%
TAATGAAACGGCGTCGTCTA+AGG + chr8_1:56930647-56930666 None:intergenic 45.0%
CGTCGTTATCCATACAAGGA+AGG + chr8_1:56930846-56930865 None:intergenic 45.0%
GTATGGATAACGACGATCTC+CGG - chr8_1:56930851-56930870 Msa1203090:CDS 45.0%
! CCGAAGACTTTGTGGTTTGT+AGG + chr8_1:56930886-56930905 None:intergenic 45.0%
!! GCAAAATCAATTGGCTCGGA+AGG - chr8_1:56931021-56931040 Msa1203090:CDS 45.0%
AAGCTGTTCGAGTCCAACAT+CGG + chr8_1:56931091-56931110 None:intergenic 45.0%
! CTTGGTGCAATATTAGGTGG+TGG - chr8_1:56931162-56931181 Msa1203090:CDS 45.0%
GAAAGATGGGATTCTGGATC+TGG + chr8_1:56930449-56930468 None:intergenic 45.0%
TAATGAAACGGCGTCGTCTA+AGG + chr8_1:56930647-56930666 None:intergenic 45.0%
CGTCGTTATCCATACAAGGA+AGG + chr8_1:56930846-56930865 None:intergenic 45.0%
GTATGGATAACGACGATCTC+CGG - chr8_1:56930851-56930870 Msa1203090:CDS 45.0%
! CCGAAGACTTTGTGGTTTGT+AGG + chr8_1:56930886-56930905 None:intergenic 45.0%
!! GCAAAATCAATTGGCTCGGA+AGG - chr8_1:56931021-56931040 Msa1203090:CDS 45.0%
AAGCTGTTCGAGTCCAACAT+CGG + chr8_1:56931091-56931110 None:intergenic 45.0%
! CTTGGTGCAATATTAGGTGG+TGG - chr8_1:56931162-56931181 Msa1203090:CDS 45.0%
!! CGTGGATTAGAGACATCGTG+TGG + chr8_1:56930819-56930838 None:intergenic 50.0%
GGTTTGTAGGTTTACCTCGC+CGG + chr8_1:56930873-56930892 None:intergenic 50.0%
CGTCTTCTCCGAAGACTTTG+TGG + chr8_1:56930894-56930913 None:intergenic 50.0%
!! AAAAGCGAGAAGAGCGTCAC+CGG + chr8_1:56930929-56930948 None:intergenic 50.0%
AATTCTCGCCGGAGAAACAC+CGG + chr8_1:56930980-56930999 None:intergenic 50.0%
ATTGCACGGACAATTCTCGC+CGG + chr8_1:56930991-56931010 None:intergenic 50.0%
GCGAGAATTGTCCGTGCAAT+CGG - chr8_1:56930991-56931010 Msa1203090:CDS 50.0%
!! CGTGGATTAGAGACATCGTG+TGG + chr8_1:56930819-56930838 None:intergenic 50.0%
GGTTTGTAGGTTTACCTCGC+CGG + chr8_1:56930873-56930892 None:intergenic 50.0%
CGTCTTCTCCGAAGACTTTG+TGG + chr8_1:56930894-56930913 None:intergenic 50.0%
!! AAAAGCGAGAAGAGCGTCAC+CGG + chr8_1:56930929-56930948 None:intergenic 50.0%
AATTCTCGCCGGAGAAACAC+CGG + chr8_1:56930980-56930999 None:intergenic 50.0%
ATTGCACGGACAATTCTCGC+CGG + chr8_1:56930991-56931010 None:intergenic 50.0%
GCGAGAATTGTCCGTGCAAT+CGG - chr8_1:56930991-56931010 Msa1203090:CDS 50.0%
ATGCGTTACTCTCTCCTCGC+CGG - chr8_1:56930694-56930713 Msa1203090:intron 55.0%
CAGGCGGCTAAACAGAGAAC+TGG + chr8_1:56930736-56930755 None:intergenic 55.0%
GATCATTTCAACGGCGCAGG+CGG + chr8_1:56930797-56930816 None:intergenic 55.0%
GTGGATCATTTCAACGGCGC+AGG + chr8_1:56930800-56930819 None:intergenic 55.0%
CCATACAAGGAAGGTCGTCG+TGG + chr8_1:56930837-56930856 None:intergenic 55.0%
CCACGACGACCTTCCTTGTA+TGG - chr8_1:56930834-56930853 Msa1203090:CDS 55.0%
! GAAGACGTTGCTGTTCTCGC+CGG - chr8_1:56930907-56930926 Msa1203090:CDS 55.0%
ATGCGTTACTCTCTCCTCGC+CGG - chr8_1:56930694-56930713 Msa1203090:intron 55.0%
CAGGCGGCTAAACAGAGAAC+TGG + chr8_1:56930736-56930755 None:intergenic 55.0%
GATCATTTCAACGGCGCAGG+CGG + chr8_1:56930797-56930816 None:intergenic 55.0%
GTGGATCATTTCAACGGCGC+AGG + chr8_1:56930800-56930819 None:intergenic 55.0%
CCATACAAGGAAGGTCGTCG+TGG + chr8_1:56930837-56930856 None:intergenic 55.0%
CCACGACGACCTTCCTTGTA+TGG - chr8_1:56930834-56930853 Msa1203090:CDS 55.0%
! GAAGACGTTGCTGTTCTCGC+CGG - chr8_1:56930907-56930926 Msa1203090:CDS 55.0%
! TGGCCTGACACGTTTTCCGC+CGG + chr8_1:56930716-56930735 None:intergenic 60.0%
TTAGCCGCCTGCGAACTCGT+CGG - chr8_1:56930745-56930764 Msa1203090:CDS 60.0%
AACCGAACCGATGGCGATGC+CGG - chr8_1:56930771-56930790 Msa1203090:CDS 60.0%
GATAACGACGATCTCCGGCG+AGG - chr8_1:56930856-56930875 Msa1203090:CDS 60.0%
CATATCGCTGTCTCCACCGC+CGG - chr8_1:56930958-56930977 Msa1203090:CDS 60.0%
! TGGCCTGACACGTTTTCCGC+CGG + chr8_1:56930716-56930735 None:intergenic 60.0%
TTAGCCGCCTGCGAACTCGT+CGG - chr8_1:56930745-56930764 Msa1203090:CDS 60.0%
AACCGAACCGATGGCGATGC+CGG - chr8_1:56930771-56930790 Msa1203090:CDS 60.0%
GATAACGACGATCTCCGGCG+AGG - chr8_1:56930856-56930875 Msa1203090:CDS 60.0%
CATATCGCTGTCTCCACCGC+CGG - chr8_1:56930958-56930977 Msa1203090:CDS 60.0%
CGTTACTCTCTCCTCGCCGG+CGG - chr8_1:56930697-56930716 Msa1203090:intron 65.0%
! TGACACGTTTTCCGCCGGCG+AGG + chr8_1:56930711-56930730 None:intergenic 65.0%
TCGCCGGCGGAAAACGTGTC+AGG - chr8_1:56930710-56930729 Msa1203090:intron 65.0%
ATTTCAACGGCGCAGGCGGC+CGG + chr8_1:56930793-56930812 None:intergenic 65.0%
CTCCACCGCCGGTGTTTCTC+CGG - chr8_1:56930969-56930988 Msa1203090:CDS 65.0%
TCTCGCCGGAGAAACACCGG+CGG + chr8_1:56930977-56930996 None:intergenic 65.0%
GGCTCGGAAGGACTCGTTGC+TGG - chr8_1:56931033-56931052 Msa1203090:CDS 65.0%
CGTTACTCTCTCCTCGCCGG+CGG - chr8_1:56930697-56930716 Msa1203090:intron 65.0%
! TGACACGTTTTCCGCCGGCG+AGG + chr8_1:56930711-56930730 None:intergenic 65.0%
TCGCCGGCGGAAAACGTGTC+AGG - chr8_1:56930710-56930729 Msa1203090:intron 65.0%
ATTTCAACGGCGCAGGCGGC+CGG + chr8_1:56930793-56930812 None:intergenic 65.0%
CTCCACCGCCGGTGTTTCTC+CGG - chr8_1:56930969-56930988 Msa1203090:CDS 65.0%
TCTCGCCGGAGAAACACCGG+CGG + chr8_1:56930977-56930996 None:intergenic 65.0%
GGCTCGGAAGGACTCGTTGC+TGG - chr8_1:56931033-56931052 Msa1203090:CDS 65.0%
TCCGCCGACGAGTTCGCAGG+CGG + chr8_1:56930752-56930771 None:intergenic 70.0%
GGTTCCGCCGACGAGTTCGC+AGG + chr8_1:56930755-56930774 None:intergenic 70.0%
CGTCGGCGGAACCGAACCGA+TGG - chr8_1:56930762-56930781 Msa1203090:CDS 70.0%
! GGCCGGCATCGCCATCGGTT+CGG + chr8_1:56930776-56930795 None:intergenic 70.0%
TCCGCCGACGAGTTCGCAGG+CGG + chr8_1:56930752-56930771 None:intergenic 70.0%
GGTTCCGCCGACGAGTTCGC+AGG + chr8_1:56930755-56930774 None:intergenic 70.0%
CGTCGGCGGAACCGAACCGA+TGG - chr8_1:56930762-56930781 Msa1203090:CDS 70.0%
! GGCCGGCATCGCCATCGGTT+CGG + chr8_1:56930776-56930795 None:intergenic 70.0%
GCCGCCTGCGAACTCGTCGG+CGG - chr8_1:56930748-56930767 Msa1203090:CDS 75.0%
CAGGCGGCCGGCATCGCCAT+CGG + chr8_1:56930781-56930800 None:intergenic 75.0%
CGCCGGAGAAACACCGGCGG+TGG + chr8_1:56930974-56930993 None:intergenic 75.0%
GCCGCCTGCGAACTCGTCGG+CGG - chr8_1:56930748-56930767 Msa1203090:CDS 75.0%
CAGGCGGCCGGCATCGCCAT+CGG + chr8_1:56930781-56930800 None:intergenic 75.0%
CGCCGGAGAAACACCGGCGG+TGG + chr8_1:56930974-56930993 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 56930367 56931579 56930367 ID=Msa1203090;Name=Msa1203090
chr8_1 mRNA 56930367 56931579 56930367 ID=Msa1203090-mRNA-1;Parent=Msa1203090;Name=Msa1203090-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|350
chr8_1 exon 56930715 56931579 56930715 ID=Msa1203090-mRNA-1:exon:18591;Parent=Msa1203090-mRNA-1
chr8_1 exon 56930367 56930554 56930367 ID=Msa1203090-mRNA-1:exon:18590;Parent=Msa1203090-mRNA-1
chr8_1 CDS 56930715 56931579 56930715 ID=Msa1203090-mRNA-1:cds;Parent=Msa1203090-mRNA-1
chr8_1 CDS 56930367 56930554 56930367 ID=Msa1203090-mRNA-1:cds;Parent=Msa1203090-mRNA-1
Gene Sequence

>Msa1203090

ATGAGTGCTGTGAATCTTAACACATGGACACACTCCAATTTCATGTTCAATCAAGTTACTACTACTGCTACAACTAGATCCAGATCCAGAATCCCATCTTTCTATTTTACCAAAATACCCATTTCAGTTTCACCCATTAAACCATCATCAAAACCCAATTCTTCTTTTTCTGTTTCATCATTACTCACAAAACAAGAACCAATAGAAGCAGAAGAACAAAACCCAATCTTCAATTTCAAATCCTACATGATAGAAAAAGCAACTAGGGTTAACAAAGCCTTAGACGACGCCGTTTCATTACGCGAACCGTTAAAAGTTCACGAAGCGATGCGTTACTCTCTCCTCGCCGGCGGAAAACGTGTCAGGCCAGTTCTCTGTTTAGCCGCCTGCGAACTCGTCGGCGGAACCGAACCGATGGCGATGCCGGCCGCCTGCGCCGTTGAAATGATCCACACGATGTCTCTAATCCACGACGACCTTCCTTGTATGGATAACGACGATCTCCGGCGAGGTAAACCTACAAACCACAAAGTCTTCGGAGAAGACGTTGCTGTTCTCGCCGGTGACGCTCTTCTCGCTTTTGCTTTCGAACATATCGCTGTCTCCACCGCCGGTGTTTCTCCGGCGAGAATTGTCCGTGCAATCGGTGAATTAGCAAAATCAATTGGCTCGGAAGGACTCGTTGCTGGACAAGTTGTTGATATCAACTCAGAAGGTTTATCCGATGTTGGACTCGAACAGCTTGAATTCATTCATCTGCATAAAACTGCGGCTTTGTTAGAAGGTGCTGTTGTTCTTGGTGCAATATTAGGTGGTGGAAGTGATGAAGACGTTGAAAAACTGCGAAAATTCGCGAGATATATCGGGAAAACTGCTGGGAAAGATTTGGTAGCTGATAAGGTTACTTATCCTAAGCTTTTAGGAATTGAAAAATCGAAAGAGTTTGCTGAGAAATTGAACCGTGATGCACAAGAACAACTTTCTGGGTTTGATTTGAATAAATCTGCTCCTTTGATTGCTTTGGCTAATTACATTGCTTATAGGCAAAACTAA

Protein sequence

>Msa1203090

MSAVNLNTWTHSNFMFNQVTTTATTRSRSRIPSFYFTKIPISVSPIKPSSKPNSSFSVSSLLTKQEPIEAEEQNPIFNFKSYMIEKATRVNKALDDAVSLREPLKVHEAMRYSLLAGGKRVRPVLCLAACELVGGTEPMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIAVSTAGVSPARIVRAIGELAKSIGSEGLVAGQVVDINSEGLSDVGLEQLEFIHLHKTAALLEGAVVLGAILGGGSDEDVEKLRKFARYIGKTAGKDLVADKVTYPKLLGIEKSKEFAEKLNRDAQEQLSGFDLNKSAPLIALANYIAYRQN*