Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1361510 | XP_003610094.1 | 97.872 | 188 | 2 | 1 | 1 | 188 | 1 | 186 | 1.24e-120 | 348 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1361510 | sp|Q6GLZ8|SNR27_XENLA | 45.263 | 95 | 39 | 4 | 89 | 182 | 72 | 154 | 2.71e-13 | 67.4 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1361510 | G7JVD2 | 97.872 | 188 | 2 | 1 | 1 | 188 | 1 | 186 | 5.94e-121 | 348 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1265510 | Msa1361510 | 0.972831 | 2.062245e-135 | -8.615850e-47 |
Msa1037030 | Msa1361510 | 0.815143 | 1.075013e-51 | -8.615850e-47 |
Msa1221180 | Msa1361510 | 0.887549 | 1.293858e-72 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1361510 | MtrunA17_Chr4g0072231 | 97.872 | 188 | 2 | 1 | 1 | 188 | 1 | 186 | 1.14e-124 | 348 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1361510 | AT5G57370.1 | 54.857 | 175 | 50 | 7 | 39 | 188 | 49 | 219 | 1.14e-41 | 140 |
Find 77 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTAGAGTTCATGACTTAATT+TGG | 0.231974 | tig0017501:+21661 | None:intergenic |
CACCAACTGTTTCTGCCTTC+AGG | 0.232895 | tig0017501:+17580 | None:intergenic |
TTTGGTGGCGGTTCAATCTT+TGG | 0.236360 | tig0017501:-17607 | Msa1361510:three_prime_UTR |
ATGTTTAACTAATACTCTTT+AGG | 0.250935 | tig0017501:-17317 | Msa1361510:three_prime_UTR |
TGCATATAGGTAATATCTTT+TGG | 0.274225 | tig0017501:-17625 | Msa1361510:intron |
GTAAAACATGACAATTAAAA+AGG | 0.301208 | tig0017501:+17292 | None:intergenic |
GGTCGCTCATGGTGGAAGAT+AGG | 0.327312 | tig0017501:+21636 | None:intergenic |
TCGGAACGACAAACATTTGT+AGG | 0.329970 | tig0017501:-17440 | Msa1361510:three_prime_UTR |
TTCGTCTCTTTGTGTTCTTT+CGG | 0.343797 | tig0017501:+21350 | None:intergenic |
GGAGCAAAGATGTTTATTAC+AGG | 0.348183 | tig0017501:-21692 | Msa1361510:five_prime_UTR |
GTAGGTTATGTTAGTTAGTC+GGG | 0.384661 | tig0017501:-17422 | Msa1361510:three_prime_UTR |
TGACGCTTTCTCGGAGGGTC+TGG | 0.391144 | tig0017501:+21398 | None:intergenic |
CTCTGTCGCGGTGGCGCTCA+CGG | 0.393021 | tig0017501:+21615 | None:intergenic |
TCACGCCGGTGACGCTTTCT+CGG | 0.409946 | tig0017501:+21389 | None:intergenic |
TTGGTGGCGGTTCAATCTTT+GGG | 0.419989 | tig0017501:-17606 | Msa1361510:three_prime_UTR |
CTGGAGAAGGTGTACGGTGG+TGG | 0.431728 | tig0017501:+21417 | None:intergenic |
TGTAGGTTATGTTAGTTAGT+CGG | 0.442867 | tig0017501:-17423 | Msa1361510:three_prime_UTR |
AGAGCGGTCGACGGGAGAAC+GGG | 0.445654 | tig0017501:+21451 | None:intergenic |
TTCTTTCGGCTCGTCATCGA+CGG | 0.449334 | tig0017501:+21364 | None:intergenic |
CAGCAAAAGCAGAAAGAGAA+TGG | 0.458617 | tig0017501:-21281 | Msa1361510:CDS |
GTCAGCTCGATTGAAGAGTT+AGG | 0.464960 | tig0017501:+17389 | None:intergenic |
TTCAATCGAGCTGACTGCTT+GGG | 0.465058 | tig0017501:-17381 | Msa1361510:three_prime_UTR |
CTTCAATCGAGCTGACTGCT+TGG | 0.469096 | tig0017501:-17382 | Msa1361510:three_prime_UTR |
CACGGTCAGGTGAACGTGTA+CGG | 0.473082 | tig0017501:+21495 | None:intergenic |
CCCTAGCGATTCTTCTCAGC+AGG | 0.485061 | tig0017501:+21077 | None:intergenic |
GTGGCGCTCACGGTCGCTCA+TGG | 0.487006 | tig0017501:+21625 | None:intergenic |
CTCTGTCACGGTCACGGTCA+CGG | 0.489950 | tig0017501:+21534 | None:intergenic |
TGACGAGAGCGTACACGGTC+AGG | 0.504053 | tig0017501:+21482 | None:intergenic |
ACGGTCAGGTGAACGTGTAC+GGG | 0.508514 | tig0017501:+21496 | None:intergenic |
GTGTACGGTGGTGGCGTCGA+CGG | 0.509241 | tig0017501:+21426 | None:intergenic |
TTAGTGGAATCAAAACCAAC+AGG | 0.512200 | tig0017501:+21203 | None:intergenic |
GTCGCTCATGGTGGAAGATA+GGG | 0.516293 | tig0017501:+21637 | None:intergenic |
ACCCTCCGAGAAAGCGTCAC+CGG | 0.516482 | tig0017501:-21394 | Msa1361510:CDS |
TCTTGCTGCGTGCTCTGTCA+CGG | 0.518504 | tig0017501:+21522 | None:intergenic |
CGATTCTTCTCAGCAGGCAA+TGG | 0.522636 | tig0017501:+21083 | None:intergenic |
ATGTTTGATATCAATTACAT+AGG | 0.523413 | tig0017501:+17350 | None:intergenic |
GAGGGTCTGGAGAAGGTGTA+CGG | 0.524478 | tig0017501:+21411 | None:intergenic |
TGCGTGCTCTGTCACGGTCA+CGG | 0.525050 | tig0017501:+21528 | None:intergenic |
CACGATCGACGTCACGGTCG+CGG | 0.530206 | tig0017501:+21564 | None:intergenic |
GAGAGCGGTCGACGGGAGAA+CGG | 0.536449 | tig0017501:+21450 | None:intergenic |
GATCGAGATGATGAAGATGA+TGG | 0.542072 | tig0017501:-21231 | Msa1361510:CDS |
TTTGAAAACAACATATAATG+TGG | 0.545775 | tig0017501:+17255 | None:intergenic |
GTGGTGTCTGACTTCGTTGA+CGG | 0.549348 | tig0017501:-21323 | Msa1361510:CDS |
AACACCGCTGACGTCAGCAC+CGG | 0.551004 | tig0017501:+21166 | None:intergenic |
TTTCTCGGAGGGTCTGGAGA+AGG | 0.552400 | tig0017501:+21404 | None:intergenic |
ATATCAATTACATAGGACAT+TGG | 0.557490 | tig0017501:+17357 | None:intergenic |
TTCGCTCTCTTTCTCTGTCG+CGG | 0.559998 | tig0017501:+21603 | None:intergenic |
GGCAGTATATGAATCGTCGT+GGG | 0.565157 | tig0017501:-21118 | Msa1361510:CDS |
TCAATCTTTGGGAAGCCTGA+AGG | 0.565643 | tig0017501:-17595 | Msa1361510:three_prime_UTR |
TACACTGGACATTGAGCTGA+AGG | 0.571442 | tig0017501:+17469 | None:intergenic |
GTGTTAGAGCTGTTACGAAA+CGG | 0.577061 | tig0017501:-21148 | Msa1361510:CDS |
CATTGAGCTGAAGGTAGCAA+AGG | 0.579411 | tig0017501:+17478 | None:intergenic |
GCCTGCTGAGAAGAATCGCT+AGG | 0.579705 | tig0017501:-21078 | Msa1361510:intron |
ACACAAAGAGACGAAGAAAG+TGG | 0.583689 | tig0017501:-21342 | Msa1361510:CDS |
CGCCGGTGACGCTTTCTCGG+AGG | 0.583974 | tig0017501:+21392 | None:intergenic |
ATTGAGCTGAAGGTAGCAAA+GGG | 0.589137 | tig0017501:+17479 | None:intergenic |
TCGACGGTGAGAGCGGTCGA+CGG | 0.590232 | tig0017501:+21442 | None:intergenic |
GAGAGTGACGAGAGCGTACA+CGG | 0.596965 | tig0017501:+21477 | None:intergenic |
AAGATGATGGGAATTCCTGT+TGG | 0.599922 | tig0017501:-21218 | Msa1361510:CDS |
GAGCAAAGATGTTTATTACA+GGG | 0.606977 | tig0017501:-21691 | Msa1361510:five_prime_UTR |
CGACGATTCATATACTGCCT+CGG | 0.608944 | tig0017501:+21122 | None:intergenic |
CCTGCTGAGAAGAATCGCTA+GGG | 0.615054 | tig0017501:-21077 | Msa1361510:intron |
TGCGATCACGATCGACGTCA+CGG | 0.615119 | tig0017501:+21558 | None:intergenic |
ATCGAGATGATGAAGATGAT+GGG | 0.616560 | tig0017501:-21230 | Msa1361510:CDS |
GCGCTCACGGTCGCTCATGG+TGG | 0.631908 | tig0017501:+21628 | None:intergenic |
GGTGGCGTCGACGGTGAGAG+CGG | 0.632925 | tig0017501:+21435 | None:intergenic |
CTGAAGGCAGAAACAGTTGG+TGG | 0.634654 | tig0017501:-17579 | Msa1361510:three_prime_UTR |
CTTCGTTGACGGAATCGCGA+AGG | 0.638838 | tig0017501:-21312 | Msa1361510:CDS |
AGGCAGTATATGAATCGTCG+TGG | 0.641387 | tig0017501:-21119 | Msa1361510:CDS |
TGGTGGAAACTAAAGAAGCA+AGG | 0.647494 | tig0017501:-17562 | Msa1361510:three_prime_UTR |
AGCCTGAAGGCAGAAACAGT+TGG | 0.648842 | tig0017501:-17582 | Msa1361510:three_prime_UTR |
GCTCTCTTTCTCTGTCGCGG+TGG | 0.660278 | tig0017501:+21606 | None:intergenic |
GCAGTATATGAATCGTCGTG+GGG | 0.662492 | tig0017501:-21117 | Msa1361510:CDS |
CAGTATATGAATCGTCGTGG+GGG | 0.663384 | tig0017501:-21116 | Msa1361510:CDS |
GGTCTGGAGAAGGTGTACGG+TGG | 0.669757 | tig0017501:+21414 | None:intergenic |
CGTCATCGACGGAATCACGC+CGG | 0.683749 | tig0017501:+21375 | None:intergenic |
ACTAAGGGAAAACCAGTACC+CGG | 0.686892 | tig0017501:-21185 | Msa1361510:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATTAAAAAGAAAAAAGA+AGG | + | tig0017501:21206-21225 | None:intergenic | 10.0% |
!! | TTAGGAATATCAAAATAATA+TGG | - | tig0017501:19080-19099 | Msa1361510:intron | 15.0% |
!! | TCTTATCATTCTGATTTATT+TGG | - | tig0017501:18250-18269 | Msa1361510:intron | 20.0% |
!! | AATTTGATTGTGTTACAATA+TGG | - | tig0017501:18964-18983 | Msa1361510:intron | 20.0% |
!!! | TTACCTATTTATTTAGGATA+AGG | + | tig0017501:19059-19078 | None:intergenic | 20.0% |
!! | CCTAATTTACCTATTTATTT+AGG | + | tig0017501:19065-19084 | None:intergenic | 20.0% |
!! | CCTAAATAAATAGGTAAATT+AGG | - | tig0017501:19062-19081 | Msa1361510:intron | 20.0% |
!!! | AATGGTATATTTGTTACAAA+TGG | + | tig0017501:19168-19187 | None:intergenic | 20.0% |
!! | TTACAATTAAACAAAAGAAG+TGG | - | tig0017501:19683-19702 | Msa1361510:intron | 20.0% |
!! | TACAATTAAACAAAAGAAGT+GGG | - | tig0017501:19684-19703 | Msa1361510:intron | 20.0% |
!!! | ATGCATTTATTTTATTTCTG+AGG | - | tig0017501:20783-20802 | Msa1361510:intron | 20.0% |
!!! | ATTGCATCTTTGAAAATTTA+GGG | + | tig0017501:21020-21039 | None:intergenic | 20.0% |
!!! | ATTGTGCAGAAAATATTTTA+CGG | + | tig0017501:21277-21296 | None:intergenic | 20.0% |
!! | ATGTTTGATATCAATTACAT+AGG | + | tig0017501:21617-21636 | None:intergenic | 20.0% |
!! | ATGTTTAACTAATACTCTTT+AGG | - | tig0017501:21647-21666 | Msa1361510:five_prime_UTR | 20.0% |
!! | GTAAAACATGACAATTAAAA+AGG | + | tig0017501:21675-21694 | None:intergenic | 20.0% |
! | TTAGAGTTCATGACTTAATT+TGG | + | tig0017501:17306-17325 | None:intergenic | 25.0% |
! | ACCCTAATTTATGATAGATT+AGG | - | tig0017501:17948-17967 | Msa1361510:intron | 25.0% |
! | CCCTAATCTATCATAAATTA+GGG | + | tig0017501:17952-17971 | None:intergenic | 25.0% |
! | CCCTAATTTATGATAGATTA+GGG | - | tig0017501:17949-17968 | Msa1361510:intron | 25.0% |
! | ACCCTAATCTATCATAAATT+AGG | + | tig0017501:17953-17972 | None:intergenic | 25.0% |
!! | GATAACCTGTTAATTTGAAT+TGG | - | tig0017501:18095-18114 | Msa1361510:intron | 25.0% |
!! | TTGTGATTAGTTCAATATTG+TGG | - | tig0017501:18178-18197 | Msa1361510:intron | 25.0% |
! | GTTTATTAAGACATATCTCT+GGG | + | tig0017501:18300-18319 | None:intergenic | 25.0% |
! | TGTTTATTAAGACATATCTC+TGG | + | tig0017501:18301-18320 | None:intergenic | 25.0% |
!!! | AGGTTTTCTAAAAAACATCA+AGG | + | tig0017501:18550-18569 | None:intergenic | 25.0% |
! | TTCCTAACAAATACATTTAC+AGG | + | tig0017501:18627-18646 | None:intergenic | 25.0% |
!! | TGTAAATGTATTTGTTAGGA+AGG | - | tig0017501:18626-18645 | Msa1361510:intron | 25.0% |
! | AATCATAGAACGATCATTAA+GGG | - | tig0017501:18699-18718 | Msa1361510:intron | 25.0% |
! | AGTGAAAAAAGATGGAAATA+CGG | + | tig0017501:18888-18907 | None:intergenic | 25.0% |
!!! | TTTCCATCTTTTTTCACTTT+TGG | - | tig0017501:18890-18909 | Msa1361510:intron | 25.0% |
!!! | TTCCATCTTTTTTCACTTTT+GGG | - | tig0017501:18891-18910 | Msa1361510:intron | 25.0% |
! | ACTCCTTATCCTAAATAAAT+AGG | - | tig0017501:19053-19072 | Msa1361510:intron | 25.0% |
! | ATAATATGGAAACTAATCCT+AGG | - | tig0017501:19094-19113 | Msa1361510:intron | 25.0% |
! | AATATCTTAGATAATCTCCT+AGG | + | tig0017501:19114-19133 | None:intergenic | 25.0% |
!! | GAGATTATCTAAGATATTCT+TGG | - | tig0017501:19116-19135 | Msa1361510:intron | 25.0% |
! | TGACATTAGAATAAGATTGA+AGG | + | tig0017501:19254-19273 | None:intergenic | 25.0% |
! | AATAGTAAAAAACTCCAATC+TGG | - | tig0017501:19290-19309 | Msa1361510:intron | 25.0% |
! | ATAGTAAAAAACTCCAATCT+GGG | - | tig0017501:19291-19310 | Msa1361510:intron | 25.0% |
! | TTGCTTCTATTAAGTAGTAA+AGG | + | tig0017501:19437-19456 | None:intergenic | 25.0% |
! | TCATGTGTTTATATTTGACA+AGG | + | tig0017501:19602-19621 | None:intergenic | 25.0% |
! | AAACAAAGAGGAAAAACAAA+AGG | - | tig0017501:19983-20002 | Msa1361510:intron | 25.0% |
! | AACAAAGAGGAAAAACAAAA+GGG | - | tig0017501:19984-20003 | Msa1361510:intron | 25.0% |
! | ATGATATAGAATCTAATCCT+AGG | - | tig0017501:20269-20288 | Msa1361510:intron | 25.0% |
! | TGTAGTTTATCTCATACTAT+AGG | + | tig0017501:20319-20338 | None:intergenic | 25.0% |
! | ATTTCTGTTCTGTGAAAATT+AGG | - | tig0017501:20529-20548 | Msa1361510:intron | 25.0% |
! | TTTCTGTTCTGTGAAAATTA+GGG | - | tig0017501:20530-20549 | Msa1361510:intron | 25.0% |
!!! | CAATTTTAAATAAAGCATCC+AGG | + | tig0017501:20610-20629 | None:intergenic | 25.0% |
!!! | CTGGATGCTTTATTTAAAAT+TGG | - | tig0017501:20608-20627 | Msa1361510:intron | 25.0% |
!! | CTTTATTTAAAATTGGAGAC+TGG | - | tig0017501:20615-20634 | Msa1361510:intron | 25.0% |
!!! | TTATTTCTGAGGTTTTTGTT+TGG | - | tig0017501:20794-20813 | Msa1361510:intron | 25.0% |
!!! | TATTTCTGAGGTTTTTGTTT+GGG | - | tig0017501:20795-20814 | Msa1361510:intron | 25.0% |
!!! | TTTAGTAAGTAGCTTTAGAA+AGG | - | tig0017501:20829-20848 | Msa1361510:intron | 25.0% |
! | AATGGAACACATATTAAACA+GGG | + | tig0017501:20936-20955 | None:intergenic | 25.0% |
! | TAATGGAACACATATTAAAC+AGG | + | tig0017501:20937-20956 | None:intergenic | 25.0% |
! | CATAGGGCTTAAAAATATAA+TGG | + | tig0017501:20954-20973 | None:intergenic | 25.0% |
!! | CATTGCATCTTTGAAAATTT+AGG | + | tig0017501:21021-21040 | None:intergenic | 25.0% |
! | ATGATGCTTATGAATGAAAT+TGG | - | tig0017501:21180-21199 | Msa1361510:CDS | 25.0% |
!! | TGCATATAGGTAATATCTTT+TGG | - | tig0017501:21339-21358 | Msa1361510:CDS | 25.0% |
!! | ATATAGGTAATATCTTTTGG+TGG | - | tig0017501:21342-21361 | Msa1361510:CDS | 25.0% |
!!! | AATGTCCAGTGTAATTTTTT+CGG | - | tig0017501:21505-21524 | Msa1361510:CDS | 25.0% |
! | ATATCAATTACATAGGACAT+TGG | + | tig0017501:21610-21629 | None:intergenic | 25.0% |
GAGCAAAGATGTTTATTACA+GGG | - | tig0017501:17273-17292 | Msa1361510:three_prime_UTR | 30.0% | |
GGGTAAAATTGAACAAACTT+AGG | + | tig0017501:17932-17951 | None:intergenic | 30.0% | |
!!! | GAAGATTTTGACTTGCTATT+AGG | - | tig0017501:17986-18005 | Msa1361510:intron | 30.0% |
!!! | TTTTGACTTGCTATTAGGTT+AGG | - | tig0017501:17991-18010 | Msa1361510:intron | 30.0% |
!! | TTTGACTTGCTATTAGGTTA+GGG | - | tig0017501:17992-18011 | Msa1361510:intron | 30.0% |
TAGCTCCAATTCAAATTAAC+AGG | + | tig0017501:18103-18122 | None:intergenic | 30.0% | |
TGAATTGGAGCTAAAATTGT+AGG | - | tig0017501:18110-18129 | Msa1361510:intron | 30.0% | |
! | TGATTAGTTCAATATTGTGG+TGG | - | tig0017501:18181-18200 | Msa1361510:intron | 30.0% |
TTCAATATTGTGGTGGTTAA+TGG | - | tig0017501:18188-18207 | Msa1361510:intron | 30.0% | |
TCTTCTTCTCTAATTCATTG+TGG | - | tig0017501:18413-18432 | Msa1361510:intron | 30.0% | |
CTTCTTCTCTAATTCATTGT+GGG | - | tig0017501:18414-18433 | Msa1361510:intron | 30.0% | |
! | ATCACAAAACTCTCCATTTT+GGG | + | tig0017501:18510-18529 | None:intergenic | 30.0% |
GACCTGTAAATGTATTTGTT+AGG | - | tig0017501:18622-18641 | Msa1361510:intron | 30.0% | |
TATGATTGTTTAGTCTCTCT+CGG | + | tig0017501:18686-18705 | None:intergenic | 30.0% | |
CAATCATAGAACGATCATTA+AGG | - | tig0017501:18698-18717 | Msa1361510:intron | 30.0% | |
AACGATCATTAAGGGATATT+TGG | - | tig0017501:18707-18726 | Msa1361510:intron | 30.0% | |
GTGAAAAAAGATGGAAATAC+GGG | + | tig0017501:18887-18906 | None:intergenic | 30.0% | |
!!! | TCCATCTTTTTTCACTTTTG+GGG | - | tig0017501:18892-18911 | Msa1361510:intron | 30.0% |
!!! | TTTTTTCACTTTTGGGGAAA+TGG | - | tig0017501:18898-18917 | Msa1361510:intron | 30.0% |
AAACATTAGTCCCTATGTAT+AGG | - | tig0017501:19022-19041 | Msa1361510:intron | 30.0% | |
AACATTAGTCCCTATGTATA+GGG | - | tig0017501:19023-19042 | Msa1361510:intron | 30.0% | |
TTACAAATGGTTTATCTCAC+AGG | + | tig0017501:19155-19174 | None:intergenic | 30.0% | |
GTTACAGTTTCTCTTTCAAA+TGG | + | tig0017501:19186-19205 | None:intergenic | 30.0% | |
TGAAAGAGAAACTGTAACAA+TGG | - | tig0017501:19188-19207 | Msa1361510:intron | 30.0% | |
AACCAGAAAAACAAAATCCA+AGG | - | tig0017501:19656-19675 | Msa1361510:intron | 30.0% | |
ACCAGAAAAACAAAATCCAA+GGG | - | tig0017501:19657-19676 | Msa1361510:intron | 30.0% | |
TGTTTAATTGTAATCTCCCT+TGG | + | tig0017501:19676-19695 | None:intergenic | 30.0% | |
TCAAAGCAAGACAAATCTAA+TGG | - | tig0017501:19798-19817 | Msa1361510:intron | 30.0% | |
!! | TTTTTCGTGAAACTTGTTCA+CGG | - | tig0017501:19828-19847 | Msa1361510:intron | 30.0% |
!! | TTTTTCCTCTTTGTTTCAGA+GGG | + | tig0017501:19979-19998 | None:intergenic | 30.0% |
! | AGAAGCTGTGAACATAATTT+TGG | + | tig0017501:20387-20406 | None:intergenic | 30.0% |
TTACATAACATGTCCAAGTA+TGG | + | tig0017501:20471-20490 | None:intergenic | 30.0% | |
TACTTGGACATGTTATGTAA+TGG | - | tig0017501:20471-20490 | Msa1361510:intron | 30.0% | |
ATCAAAGATTTGATGTGTGT+TGG | - | tig0017501:20501-20520 | Msa1361510:intron | 30.0% | |
TAGAATCAACTTATCTTTCC+TGG | - | tig0017501:20589-20608 | Msa1361510:intron | 30.0% | |
TAACTGAGAGATTACATGAT+TGG | - | tig0017501:20868-20887 | Msa1361510:intron | 30.0% | |
AGATTACATGATTGGCAATA+AGG | - | tig0017501:20876-20895 | Msa1361510:intron | 30.0% | |
CAAGTAAAAATATCCACATC+AGG | + | tig0017501:21051-21070 | None:intergenic | 30.0% | |
TTTCATTCATAAGCATCATG+TGG | + | tig0017501:21179-21198 | None:intergenic | 30.0% | |
! | TCGTAGTTTTCATTGCATAT+AGG | - | tig0017501:21326-21345 | Msa1361510:CDS | 30.0% |
GTGTGTCAAAAAAAAACAAG+AGG | + | tig0017501:21439-21458 | None:intergenic | 30.0% | |
TGTAGGTTATGTTAGTTAGT+CGG | - | tig0017501:21541-21560 | Msa1361510:CDS | 30.0% | |
GGAGCAAAGATGTTTATTAC+AGG | - | tig0017501:17272-17291 | Msa1361510:three_prime_UTR | 35.0% | |
TTCGTCTCTTTGTGTTCTTT+CGG | + | tig0017501:17617-17636 | None:intergenic | 35.0% | |
ATCGAGATGATGAAGATGAT+GGG | - | tig0017501:17734-17753 | Msa1361510:intron | 35.0% | |
TTAGTGGAATCAAAACCAAC+AGG | + | tig0017501:17764-17783 | None:intergenic | 35.0% | |
!!! | TGTTGGTTTTGATTCCACTA+AGG | - | tig0017501:17763-17782 | Msa1361510:intron | 35.0% |
!!! | GTTGGTTTTGATTCCACTAA+GGG | - | tig0017501:17764-17783 | Msa1361510:intron | 35.0% |
! | GGTTAGGGTTTAGCTTAAAT+CGG | - | tig0017501:18007-18026 | Msa1361510:intron | 35.0% |
GAACTAATCACAAGCTATTC+AGG | + | tig0017501:18171-18190 | None:intergenic | 35.0% | |
GTTAATGGTTATCAGCATTC+TGG | - | tig0017501:18203-18222 | Msa1361510:intron | 35.0% | |
TAAAAGTTGCAGATTCACTC+TGG | - | tig0017501:18323-18342 | Msa1361510:intron | 35.0% | |
!! | TATTGGTGTTGTTGTACTTG+AGG | - | tig0017501:18355-18374 | Msa1361510:intron | 35.0% |
ATGAATTAGAGAAGAAGACG+AGG | + | tig0017501:18411-18430 | None:intergenic | 35.0% | |
! | TCTAATTCATTGTGGGTTGT+GGG | - | tig0017501:18421-18440 | Msa1361510:intron | 35.0% |
AGAGAGGATGAGAAAAGTAA+AGG | + | tig0017501:18455-18474 | None:intergenic | 35.0% | |
! | ACTTTTCTCATCCTCTCTTT+TGG | - | tig0017501:18457-18476 | Msa1361510:intron | 35.0% |
! | TCACAAAACTCTCCATTTTG+GGG | + | tig0017501:18509-18528 | None:intergenic | 35.0% |
! | CATCACAAAACTCTCCATTT+TGG | + | tig0017501:18511-18530 | None:intergenic | 35.0% |
CACTTTACAATCTTCTCTAC+AGG | + | tig0017501:18570-18589 | None:intergenic | 35.0% | |
ATAGTTCATGACACGACTTT+AGG | - | tig0017501:18750-18769 | Msa1361510:intron | 35.0% | |
TCGTCACTTGATTCATATAG+TGG | - | tig0017501:18773-18792 | Msa1361510:intron | 35.0% | |
!! | ATCCTGTAGAAGGTATTGAA+TGG | - | tig0017501:18796-18815 | Msa1361510:intron | 35.0% |
TTCTACTATGTTGCAAGTCA+TGG | - | tig0017501:18844-18863 | Msa1361510:intron | 35.0% | |
TCCCCAAAAGTGAAAAAAGA+TGG | + | tig0017501:18896-18915 | None:intergenic | 35.0% | |
GTCTTGTATCCCTATACATA+GGG | + | tig0017501:19035-19054 | None:intergenic | 35.0% | |
! | AGTCTTGTATCCCTATACAT+AGG | + | tig0017501:19036-19055 | None:intergenic | 35.0% |
! | CTTTCCTACTTGAAGCATTA+CGG | + | tig0017501:19324-19343 | None:intergenic | 35.0% |
!! | GAGTTGTGGCTTTTGATTAA+TGG | + | tig0017501:19411-19430 | None:intergenic | 35.0% |
TTATCTAGGCGGTTAAGATT+TGG | + | tig0017501:19492-19511 | None:intergenic | 35.0% | |
! | GGATTATCCGACAATGATTT+TGG | + | tig0017501:19564-19583 | None:intergenic | 35.0% |
!!! | TCCCTTGGATTTTGTTTTTC+TGG | + | tig0017501:19661-19680 | None:intergenic | 35.0% |
ATGGGTTTGAATCCTTGTTA+TGG | + | tig0017501:19712-19731 | None:intergenic | 35.0% | |
AAGCAAGACAAATCTAATGG+TGG | - | tig0017501:19801-19820 | Msa1361510:intron | 35.0% | |
!! | GTTTTTCCTCTTTGTTTCAG+AGG | + | tig0017501:19980-19999 | None:intergenic | 35.0% |
! | AGTCTTGTACCTCTATAAAG+GGG | + | tig0017501:20217-20236 | None:intergenic | 35.0% |
! | GAGTCTTGTACCTCTATAAA+GGG | + | tig0017501:20218-20237 | None:intergenic | 35.0% |
! | TGAGTCTTGTACCTCTATAA+AGG | + | tig0017501:20219-20238 | None:intergenic | 35.0% |
CACATCTTGTATTATCTCCT+AGG | + | tig0017501:20289-20308 | None:intergenic | 35.0% | |
AAAGATTTGATGTGTGTTGG+AGG | - | tig0017501:20504-20523 | Msa1361510:intron | 35.0% | |
AAGATTTGATGTGTGTTGGA+GGG | - | tig0017501:20505-20524 | Msa1361510:intron | 35.0% | |
AGAACAGATGTGAATTGTGA+TGG | - | tig0017501:20673-20692 | Msa1361510:intron | 35.0% | |
GAACAGATGTGAATTGTGAT+GGG | - | tig0017501:20674-20693 | Msa1361510:intron | 35.0% | |
AACAGATGTGAATTGTGATG+GGG | - | tig0017501:20675-20694 | Msa1361510:intron | 35.0% | |
ACTACTCGAGTATAGCTAAA+AGG | + | tig0017501:21096-21115 | None:intergenic | 35.0% | |
ATTCATAAGCATCATGTGGT+TGG | + | tig0017501:21175-21194 | None:intergenic | 35.0% | |
! | TAGGTAATATCTTTTGGTGG+CGG | - | tig0017501:21345-21364 | Msa1361510:CDS | 35.0% |
TCGTTCCGAAAAAATTACAC+TGG | + | tig0017501:21513-21532 | None:intergenic | 35.0% | |
GTAGGTTATGTTAGTTAGTC+GGG | - | tig0017501:21542-21561 | Msa1361510:CDS | 35.0% | |
ACACAAAGAGACGAAGAAAG+TGG | - | tig0017501:17622-17641 | Msa1361510:intron | 40.0% | |
CAGCAAAAGCAGAAAGAGAA+TGG | - | tig0017501:17683-17702 | Msa1361510:intron | 40.0% | |
GATCGAGATGATGAAGATGA+TGG | - | tig0017501:17733-17752 | Msa1361510:intron | 40.0% | |
!! | AAGATGATGGGAATTCCTGT+TGG | - | tig0017501:17746-17765 | Msa1361510:intron | 40.0% |
GTGTTAGAGCTGTTACGAAA+CGG | - | tig0017501:17816-17835 | Msa1361510:intron | 40.0% | |
! | CTCTAATTCATTGTGGGTTG+TGG | - | tig0017501:18420-18439 | Msa1361510:intron | 40.0% |
ATACTTGCCATACTCAGAGT+AGG | + | tig0017501:18483-18502 | None:intergenic | 40.0% | |
GGCAAGTATTATCCCCAAAA+TGG | - | tig0017501:18494-18513 | Msa1361510:intron | 40.0% | |
AAGTGTCAAGCTTGAGTGAT+TGG | - | tig0017501:18585-18604 | Msa1361510:intron | 40.0% | |
TGTTAGGAAGGTAGACCAAA+TGG | - | tig0017501:18638-18657 | Msa1361510:intron | 40.0% | |
GTTAGGAAGGTAGACCAAAT+GGG | - | tig0017501:18639-18658 | Msa1361510:intron | 40.0% | |
TTAGGAAGGTAGACCAAATG+GGG | - | tig0017501:18640-18659 | Msa1361510:intron | 40.0% | |
GTATTTCACTGTTCCCCATT+TGG | + | tig0017501:18656-18675 | None:intergenic | 40.0% | |
GGGAACAGTGAAATACTTAG+AGG | - | tig0017501:18660-18679 | Msa1361510:intron | 40.0% | |
!! | CATATAGTGGATCCTGTAGA+AGG | - | tig0017501:18786-18805 | Msa1361510:intron | 40.0% |
CACCATTCAATACCTTCTAC+AGG | + | tig0017501:18801-18820 | None:intergenic | 40.0% | |
!! | CTGTAGAAGGTATTGAATGG+TGG | - | tig0017501:18799-18818 | Msa1361510:intron | 40.0% |
TATGTTGCAAGTCATGGTAG+TGG | - | tig0017501:18850-18869 | Msa1361510:intron | 40.0% | |
ACCTGATGTACTTACTTGCT+AGG | - | tig0017501:19219-19238 | Msa1361510:intron | 40.0% | |
TCCTAGCAAGTAAGTACATC+AGG | + | tig0017501:19223-19242 | None:intergenic | 40.0% | |
ATTGCCGTAATGCTTCAAGT+AGG | - | tig0017501:19317-19336 | Msa1361510:intron | 40.0% | |
CTTGAGAAGTTGCTTGTTCT+TGG | + | tig0017501:19360-19379 | None:intergenic | 40.0% | |
CAAGAACAAGCAACTTCTCA+AGG | - | tig0017501:19358-19377 | Msa1361510:intron | 40.0% | |
! | AGTAGTAAAGGCTTGAGTTG+TGG | + | tig0017501:19425-19444 | None:intergenic | 40.0% |
TTGGCAGCTAATGTCTTATG+TGG | + | tig0017501:19473-19492 | None:intergenic | 40.0% | |
GTTTCAGCTTCTTATCTAGG+CGG | + | tig0017501:19503-19522 | None:intergenic | 40.0% | |
CGTGTTTCAGCTTCTTATCT+AGG | + | tig0017501:19506-19525 | None:intergenic | 40.0% | |
TGTCAGCTTATTCTGTAGAC+AGG | + | tig0017501:19536-19555 | None:intergenic | 40.0% | |
TGTCTACAGAATAAGCTGAC+AGG | - | tig0017501:19535-19554 | Msa1361510:intron | 40.0% | |
GTCTACAGAATAAGCTGACA+GGG | - | tig0017501:19536-19555 | Msa1361510:intron | 40.0% | |
CAGGGAACCAAAATCATTGT+CGG | - | tig0017501:19554-19573 | Msa1361510:intron | 40.0% | |
ACAAGGCTTTGCTCATAGTT+GGG | + | tig0017501:19585-19604 | None:intergenic | 40.0% | |
AGGATTCAAACCCATTACCT+AGG | - | tig0017501:19717-19736 | Msa1361510:intron | 40.0% | |
GGATTCAAACCCATTACCTA+GGG | - | tig0017501:19718-19737 | Msa1361510:intron | 40.0% | |
AAGGATGCTTCCATAGACTT+AGG | + | tig0017501:19744-19763 | None:intergenic | 40.0% | |
TGTTTCACCACTTGAGCTAT+AGG | - | tig0017501:19765-19784 | Msa1361510:intron | 40.0% | |
GTTTCACCACTTGAGCTATA+GGG | - | tig0017501:19766-19785 | Msa1361510:intron | 40.0% | |
AAAAGTCCCTATAGCTCAAG+TGG | + | tig0017501:19775-19794 | None:intergenic | 40.0% | |
AAAACGTAGCAACCAACAGA+GGG | - | tig0017501:19907-19926 | Msa1361510:intron | 40.0% | |
TCCAGTTTAATCTGCACTGT+TGG | + | tig0017501:19939-19958 | None:intergenic | 40.0% | |
! | TCTTTGTTTCAGAGGGTTAC+TGG | + | tig0017501:19972-19991 | None:intergenic | 40.0% |
!! | AGTAACCCTCTGAAACAAAG+AGG | - | tig0017501:19971-19990 | Msa1361510:intron | 40.0% |
!! | TTCCCAACCTTTCTGAAACT+CGG | - | tig0017501:20044-20063 | Msa1361510:intron | 40.0% |
AGATCACAAAGGATCAAACC+AGG | - | tig0017501:20087-20106 | Msa1361510:intron | 40.0% | |
! | TCAACATGATATCTAGAGCC+TGG | + | tig0017501:20108-20127 | None:intergenic | 40.0% |
TCTTGTACCTCTATAAAGGG+GGG | + | tig0017501:20215-20234 | None:intergenic | 40.0% | |
GTCTTGTACCTCTATAAAGG+GGG | + | tig0017501:20216-20235 | None:intergenic | 40.0% | |
CTGCTAGAAACAAACACCAT+CGG | - | tig0017501:20413-20432 | Msa1361510:intron | 40.0% | |
ATTCTTGTCGATGCCATACT+TGG | - | tig0017501:20455-20474 | Msa1361510:intron | 40.0% | |
TGATTTATTGGGTGCACTGT+TGG | - | tig0017501:20759-20778 | Msa1361510:intron | 40.0% | |
GCAGAACATATCGTCTCATA+GGG | + | tig0017501:20970-20989 | None:intergenic | 40.0% | |
AGCAGAACATATCGTCTCAT+AGG | + | tig0017501:20971-20990 | None:intergenic | 40.0% | |
GCAATGCTAATTTCCTGATG+TGG | - | tig0017501:21035-21054 | Msa1361510:intron | 40.0% | |
TTACTTGTATACGCTCACGT+TGG | - | tig0017501:21064-21083 | Msa1361510:intron | 40.0% | |
TGGTGGAAACTAAAGAAGCA+AGG | - | tig0017501:21402-21421 | Msa1361510:CDS | 40.0% | |
ATTGAGCTGAAGGTAGCAAA+GGG | + | tig0017501:21488-21507 | None:intergenic | 40.0% | |
TCGGAACGACAAACATTTGT+AGG | - | tig0017501:21524-21543 | Msa1361510:CDS | 40.0% | |
ACTAAGGGAAAACCAGTACC+CGG | - | tig0017501:17779-17798 | Msa1361510:intron | 45.0% | |
CGACGATTCATATACTGCCT+CGG | + | tig0017501:17845-17864 | None:intergenic | 45.0% | |
AGGCAGTATATGAATCGTCG+TGG | - | tig0017501:17845-17864 | Msa1361510:intron | 45.0% | |
GGCAGTATATGAATCGTCGT+GGG | - | tig0017501:17846-17865 | Msa1361510:intron | 45.0% | |
GCAGTATATGAATCGTCGTG+GGG | - | tig0017501:17847-17866 | Msa1361510:intron | 45.0% | |
CAGTATATGAATCGTCGTGG+GGG | - | tig0017501:17848-17867 | Msa1361510:intron | 45.0% | |
CACTCTGGCACACTCTTTAT+TGG | - | tig0017501:18338-18357 | Msa1361510:intron | 45.0% | |
GAAGAAGACGAGGTGAACTA+CGG | + | tig0017501:18401-18420 | None:intergenic | 45.0% | |
! | TTCATTGTGGGTTGTGGGTT+TGG | - | tig0017501:18426-18445 | Msa1361510:intron | 45.0% |
! | CTTTTGGCCTACTCTGAGTA+TGG | - | tig0017501:18473-18492 | Msa1361510:intron | 45.0% |
TTACGGCAATGTTCCCAGAT+TGG | + | tig0017501:19307-19326 | None:intergenic | 45.0% | |
CTCAAGGCTGCTTAACCATT+TGG | - | tig0017501:19374-19393 | Msa1361510:intron | 45.0% | |
ATGGTTCAGTGCTAGCCAAA+TGG | + | tig0017501:19392-19411 | None:intergenic | 45.0% | |
GCAGCTAATGTCTTATGTGG+TGG | + | tig0017501:19470-19489 | None:intergenic | 45.0% | |
GACAAGGCTTTGCTCATAGT+TGG | + | tig0017501:19586-19605 | None:intergenic | 45.0% | |
! | AAGAAGTGGGCTCCATAACA+AGG | - | tig0017501:19697-19716 | Msa1361510:intron | 45.0% |
AGACTTAGGCCCTAGGTAAT+GGG | + | tig0017501:19730-19749 | None:intergenic | 45.0% | |
TAGACTTAGGCCCTAGGTAA+TGG | + | tig0017501:19731-19750 | None:intergenic | 45.0% | |
TTACCTAGGGCCTAAGTCTA+TGG | - | tig0017501:19731-19750 | Msa1361510:intron | 45.0% | |
AGCTCAAGTGGTGAAACACA+AGG | + | tig0017501:19763-19782 | None:intergenic | 45.0% | |
! | TTCGTGAAACTTGTTCACGG+TGG | - | tig0017501:19831-19850 | Msa1361510:intron | 45.0% |
GCCTGAAGTTATAGCTGCTA+GGG | - | tig0017501:19875-19894 | Msa1361510:intron | 45.0% | |
ACCCTAGCAGCTATAACTTC+AGG | + | tig0017501:19879-19898 | None:intergenic | 45.0% | |
AAGTTATAGCTGCTAGGGTG+AGG | - | tig0017501:19880-19899 | Msa1361510:intron | 45.0% | |
AGTTATAGCTGCTAGGGTGA+GGG | - | tig0017501:19881-19900 | Msa1361510:intron | 45.0% | |
GAAAACGTAGCAACCAACAG+AGG | - | tig0017501:19906-19925 | Msa1361510:intron | 45.0% | |
GCCAACAGTGCAGATTAAAC+TGG | - | tig0017501:19935-19954 | Msa1361510:intron | 45.0% | |
ACACTAACCCCCCTTTATAG+AGG | - | tig0017501:20205-20224 | Msa1361510:intron | 45.0% | |
!! | GTTTGCACGCGTTGATTTCT+AGG | - | tig0017501:21118-21137 | Msa1361510:CDS | 45.0% |
!! | TTTGGTGGCGGTTCAATCTT+TGG | - | tig0017501:21357-21376 | Msa1361510:CDS | 45.0% |
!! | TTGGTGGCGGTTCAATCTTT+GGG | - | tig0017501:21358-21377 | Msa1361510:CDS | 45.0% |
! | TCAATCTTTGGGAAGCCTGA+AGG | - | tig0017501:21369-21388 | Msa1361510:CDS | 45.0% |
CATTGAGCTGAAGGTAGCAA+AGG | + | tig0017501:21489-21508 | None:intergenic | 45.0% | |
TACACTGGACATTGAGCTGA+AGG | + | tig0017501:21498-21517 | None:intergenic | 45.0% | |
GTCAGCTCGATTGAAGAGTT+AGG | + | tig0017501:21578-21597 | None:intergenic | 45.0% | |
TTCAATCGAGCTGACTGCTT+GGG | - | tig0017501:21583-21602 | Msa1361510:CDS | 45.0% | |
!! | ATTAATTATTAATGATTTAT+TGG | - | tig0017501:20747-20766 | Msa1361510:intron | 5.0% |
!! | TTAATTATTAATGATTTATT+GGG | - | tig0017501:20748-20767 | Msa1361510:intron | 5.0% |
! | GTCGCTCATGGTGGAAGATA+GGG | + | tig0017501:17330-17349 | None:intergenic | 50.0% |
TTCGCTCTCTTTCTCTGTCG+CGG | + | tig0017501:17364-17383 | None:intergenic | 50.0% | |
! | TTCTTTCGGCTCGTCATCGA+CGG | + | tig0017501:17603-17622 | None:intergenic | 50.0% |
GTGGTGTCTGACTTCGTTGA+CGG | - | tig0017501:17641-17660 | Msa1361510:intron | 50.0% | |
!!! | GGGTACTGGTTTTCCCTTAG+TGG | + | tig0017501:17780-17799 | None:intergenic | 50.0% |
CGATTCTTCTCAGCAGGCAA+TGG | + | tig0017501:17884-17903 | None:intergenic | 50.0% | |
CCTGCTGAGAAGAATCGCTA+GGG | - | tig0017501:17887-17906 | Msa1361510:intron | 50.0% | |
CTCAGAGTAGGCCAAAAGAG+AGG | + | tig0017501:18471-18490 | None:intergenic | 50.0% | |
CTTCCATAGACTTAGGCCCT+AGG | + | tig0017501:19737-19756 | None:intergenic | 50.0% | |
! | GTGAAACTTGTTCACGGTGG+CGG | - | tig0017501:19834-19853 | Msa1361510:intron | 50.0% |
GGCCTGAAGTTATAGCTGCT+AGG | - | tig0017501:19874-19893 | Msa1361510:intron | 50.0% | |
CGCCGAGTTTCAGAAAGGTT+GGG | + | tig0017501:20049-20068 | None:intergenic | 50.0% | |
!! | CCAACCTTTCTGAAACTCGG+CGG | - | tig0017501:20047-20066 | Msa1361510:intron | 50.0% |
! | AGTGACGGGACAGATCACAA+AGG | - | tig0017501:20076-20095 | Msa1361510:intron | 50.0% |
ACAAACACCATCGGATGCGT+AGG | - | tig0017501:20422-20441 | Msa1361510:intron | 50.0% | |
AGCCTGAAGGCAGAAACAGT+TGG | - | tig0017501:21382-21401 | Msa1361510:CDS | 50.0% | |
!! | CACCAACTGTTTCTGCCTTC+AGG | + | tig0017501:21387-21406 | None:intergenic | 50.0% |
CTGAAGGCAGAAACAGTTGG+TGG | - | tig0017501:21385-21404 | Msa1361510:CDS | 50.0% | |
CTTCAATCGAGCTGACTGCT+TGG | - | tig0017501:21582-21601 | Msa1361510:CDS | 50.0% | |
! | GGTCGCTCATGGTGGAAGAT+AGG | + | tig0017501:17331-17350 | None:intergenic | 55.0% |
TGCGATCACGATCGACGTCA+CGG | + | tig0017501:17409-17428 | None:intergenic | 55.0% | |
TCTTGCTGCGTGCTCTGTCA+CGG | + | tig0017501:17445-17464 | None:intergenic | 55.0% | |
ACGGTCAGGTGAACGTGTAC+GGG | + | tig0017501:17471-17490 | None:intergenic | 55.0% | |
CACGGTCAGGTGAACGTGTA+CGG | + | tig0017501:17472-17491 | None:intergenic | 55.0% | |
! | GAGAGTGACGAGAGCGTACA+CGG | + | tig0017501:17490-17509 | None:intergenic | 55.0% |
! | GAGGGTCTGGAGAAGGTGTA+CGG | + | tig0017501:17556-17575 | None:intergenic | 55.0% |
TTTCTCGGAGGGTCTGGAGA+AGG | + | tig0017501:17563-17582 | None:intergenic | 55.0% | |
CTTCGTTGACGGAATCGCGA+AGG | - | tig0017501:17652-17671 | Msa1361510:intron | 55.0% | |
GCCTGCTGAGAAGAATCGCT+AGG | - | tig0017501:17886-17905 | Msa1361510:intron | 55.0% | |
CCCTAGCGATTCTTCTCAGC+AGG | + | tig0017501:17890-17909 | None:intergenic | 55.0% | |
GAAGACGAGGTGAACTACGG+AGG | + | tig0017501:18398-18417 | None:intergenic | 55.0% | |
ACGTAGCAACCAACAGAGGG+AGG | - | tig0017501:19910-19929 | Msa1361510:intron | 55.0% | |
!! | TGTTGGCTTCCTCCCTCTGT+TGG | + | tig0017501:19922-19941 | None:intergenic | 55.0% |
CCGCCGAGTTTCAGAAAGGT+TGG | + | tig0017501:20050-20069 | None:intergenic | 55.0% | |
!! | ACCTTTCTGAAACTCGGCGG+TGG | - | tig0017501:20050-20069 | Msa1361510:intron | 55.0% |
TCCACCGCCGAGTTTCAGAA+AGG | + | tig0017501:20054-20073 | None:intergenic | 55.0% | |
ACTCGGCGGTGGAATAGTGA+CGG | - | tig0017501:20061-20080 | Msa1361510:intron | 55.0% | |
GCTCTCTTTCTCTGTCGCGG+TGG | + | tig0017501:17361-17380 | None:intergenic | 60.0% | |
CTCTGTCACGGTCACGGTCA+CGG | + | tig0017501:17433-17452 | None:intergenic | 60.0% | |
TGCGTGCTCTGTCACGGTCA+CGG | + | tig0017501:17439-17458 | None:intergenic | 60.0% | |
! | TGACGAGAGCGTACACGGTC+AGG | + | tig0017501:17485-17504 | None:intergenic | 60.0% |
! | CTGGAGAAGGTGTACGGTGG+TGG | + | tig0017501:17550-17569 | None:intergenic | 60.0% |
! | GGTCTGGAGAAGGTGTACGG+TGG | + | tig0017501:17553-17572 | None:intergenic | 60.0% |
TGACGCTTTCTCGGAGGGTC+TGG | + | tig0017501:17569-17588 | None:intergenic | 60.0% | |
!! | ACCCTCCGAGAAAGCGTCAC+CGG | - | tig0017501:17570-17589 | Msa1361510:three_prime_UTR | 60.0% |
TCACGCCGGTGACGCTTTCT+CGG | + | tig0017501:17578-17597 | None:intergenic | 60.0% | |
CGTCATCGACGGAATCACGC+CGG | + | tig0017501:17592-17611 | None:intergenic | 60.0% | |
AACACCGCTGACGTCAGCAC+CGG | + | tig0017501:17801-17820 | None:intergenic | 60.0% | |
CTGTTACGAAACGGCAGCCG+AGG | - | tig0017501:17825-17844 | Msa1361510:intron | 60.0% | |
GACGAGGTGAACTACGGAGG+AGG | + | tig0017501:18395-18414 | None:intergenic | 60.0% | |
! | AACTTGTTCACGGTGGCGGC+CGG | - | tig0017501:19838-19857 | Msa1361510:intron | 60.0% |
CTCGGCGGTGGAATAGTGAC+GGG | - | tig0017501:20062-20081 | Msa1361510:intron | 60.0% | |
ACACCATCGGATGCGTAGGC+TGG | - | tig0017501:20426-20445 | Msa1361510:intron | 60.0% | |
TCACCAGCCTACGCATCCGA+TGG | + | tig0017501:20432-20451 | None:intergenic | 60.0% | |
CACGATCGACGTCACGGTCG+CGG | + | tig0017501:17403-17422 | None:intergenic | 65.0% | |
AGAGCGGTCGACGGGAGAAC+GGG | + | tig0017501:17516-17535 | None:intergenic | 65.0% | |
GAGAGCGGTCGACGGGAGAA+CGG | + | tig0017501:17517-17536 | None:intergenic | 65.0% | |
TCGACGGTGAGAGCGGTCGA+CGG | + | tig0017501:17525-17544 | None:intergenic | 65.0% | |
! | GTGTACGGTGGTGGCGTCGA+CGG | + | tig0017501:17541-17560 | None:intergenic | 65.0% |
GCCGGTGACGCTTTCTCGGA+GGG | + | tig0017501:17574-17593 | None:intergenic | 65.0% | |
! | CTGACGTCAGCACCGGGTAC+TGG | + | tig0017501:17794-17813 | None:intergenic | 65.0% |
!! | GTACCCGGTGCTGACGTCAG+CGG | - | tig0017501:17794-17813 | Msa1361510:intron | 65.0% |
ACACCGCTGACGTCAGCACC+GGG | + | tig0017501:17800-17819 | None:intergenic | 65.0% | |
GCGCTCACGGTCGCTCATGG+TGG | + | tig0017501:17339-17358 | None:intergenic | 70.0% | |
GTGGCGCTCACGGTCGCTCA+TGG | + | tig0017501:17342-17361 | None:intergenic | 70.0% | |
CTCTGTCGCGGTGGCGCTCA+CGG | + | tig0017501:17352-17371 | None:intergenic | 70.0% | |
CGACGGTGAGAGCGGTCGAC+GGG | + | tig0017501:17524-17543 | None:intergenic | 70.0% | |
!! | GGTGGCGTCGACGGTGAGAG+CGG | + | tig0017501:17532-17551 | None:intergenic | 70.0% |
CGCCGGTGACGCTTTCTCGG+AGG | + | tig0017501:17575-17594 | None:intergenic | 70.0% | |
! | TTGTTCACGGTGGCGGCCGG+CGG | - | tig0017501:19841-19860 | Msa1361510:intron | 70.0% |
CAGGCCACCATCACCACCGC+CGG | + | tig0017501:19860-19879 | None:intergenic | 70.0% | |
!! | TTCACGGTGGCGGCCGGCGG+TGG | - | tig0017501:19844-19863 | Msa1361510:intron | 80.0% |
! | GTGGCGGCCGGCGGTGGTGA+TGG | - | tig0017501:19850-19869 | Msa1361510:intron | 80.0% |
!!! | GCGGCCGGCGGTGGTGATGG+TGG | - | tig0017501:19853-19872 | Msa1361510:intron | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0017501 | gene | 17260 | 21726 | 17260 | ID=Msa1361510;Name=Msa1361510 |
tig0017501 | mRNA | 17260 | 21726 | 17260 | ID=Msa1361510-mRNA-1;Parent=Msa1361510;Name=Msa1361510-mRNA-1;_AED=0.00;_eAED=0.00;_QI=81|0|0.5|1|0|0.5|2|379|188 |
tig0017501 | exon | 17260 | 17638 | 17260 | ID=Msa1361510-mRNA-1:exon:12456;Parent=Msa1361510-mRNA-1 |
tig0017501 | exon | 21079 | 21726 | 21079 | ID=Msa1361510-mRNA-1:exon:12455;Parent=Msa1361510-mRNA-1 |
tig0017501 | five_prime_UTR | 21646 | 21726 | 21646 | ID=Msa1361510-mRNA-1:five_prime_utr;Parent=Msa1361510-mRNA-1 |
tig0017501 | CDS | 21079 | 21645 | 21079 | ID=Msa1361510-mRNA-1:cds;Parent=Msa1361510-mRNA-1 |
tig0017501 | three_prime_UTR | 17260 | 17638 | 17260 | ID=Msa1361510-mRNA-1:three_prime_utr;Parent=Msa1361510-mRNA-1 |
Gene Sequence |
Protein sequence |