Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1222110 | XP_024638184.1 | 100.000 | 77 | 0 | 0 | 1 | 77 | 1 | 77 | 9.93e-52 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1222110 | sp|Q9SUD3|CX6B3_ARATH | 86.667 | 75 | 10 | 0 | 3 | 77 | 4 | 78 | 1.13e-46 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1222110 | Msa1264860 | 0.829174 | 5.967510e-55 | -8.615850e-47 |
| Msa1222110 | Msa1463650 | 0.855433 | 6.328899e-62 | -8.615850e-47 |
| Msa1222110 | Msa1466790 | 0.800003 | 1.766753e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1222110 | MtrunA17_Chr4g0073271 | 100.000 | 77 | 0 | 0 | 1 | 77 | 1 | 77 | 9.13e-56 | 166 |
| Msa1222110 | MtrunA17_Chr5g0426571 | 81.333 | 75 | 14 | 0 | 3 | 77 | 109 | 183 | 1.87e-47 | 148 |
| Msa1222110 | MtrunA17_Chr5g0400121 | 43.478 | 69 | 38 | 1 | 7 | 74 | 62 | 130 | 9.29e-20 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1222110 | AT4G28060.1 | 86.667 | 75 | 10 | 0 | 3 | 77 | 4 | 78 | 1.15e-47 | 145 |
| Msa1222110 | AT5G57815.1 | 86.667 | 75 | 10 | 0 | 3 | 77 | 4 | 78 | 1.65e-47 | 145 |
| Msa1222110 | AT1G22450.1 | 77.333 | 75 | 17 | 0 | 3 | 77 | 116 | 190 | 1.55e-45 | 144 |
| Msa1222110 | AT1G32710.1 | 45.455 | 55 | 30 | 0 | 9 | 63 | 59 | 113 | 3.39e-15 | 65.5 |
Find 35 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAGGTGCATGACAGTAAA+AGG | 0.296713 | 8_1:-86313143 | Msa1222110:intron |
| GTTCTCTTTGCCCCGGTGAA+TGG | 0.301610 | 8_1:-86313079 | Msa1222110:CDS |
| GCAAAGAGAACGGTAGTATT+TGG | 0.308371 | 8_1:+86313091 | None:intergenic |
| TTCTCTTTGCCCCGGTGAAT+GGG | 0.347711 | 8_1:-86313078 | Msa1222110:intron |
| ACAGAGAAAACGATAGGAAA+TGG | 0.414976 | 8_1:+86314851 | None:intergenic |
| AAAATAGTTTCAAGAATTTG+TGG | 0.419375 | 8_1:+86311716 | None:intergenic |
| TCATGGTGTGTGGATCAATA+AGG | 0.433658 | 8_1:-86311761 | Msa1222110:three_prime_UTR |
| TGCCGGGTTTGATTAGTTGT+AGG | 0.456773 | 8_1:+86313271 | None:intergenic |
| GAAATTCTTGAACATTCTGT+TGG | 0.479714 | 8_1:-86311821 | Msa1222110:three_prime_UTR |
| CTCGCTACATAGAGTTTCAC+AGG | 0.490501 | 8_1:-86313240 | Msa1222110:intron |
| CCCTTGTGACTTCTGAGACA+TGG | 0.492635 | 8_1:-86311843 | Msa1222110:three_prime_UTR |
| GTAGGAAAACGAAAATCAAC+AGG | 0.493074 | 8_1:+86313289 | None:intergenic |
| ACATGCTTTCAAAGAGGTCC+TGG | 0.510554 | 8_1:+86311876 | None:intergenic |
| AGGGATGCTTACCCATTCAC+CGG | 0.515653 | 8_1:+86313067 | None:intergenic |
| TGATTATCTTTACCGAGTCA+TGG | 0.528804 | 8_1:-86311778 | Msa1222110:three_prime_UTR |
| TACTACCGTTCTCTTTGCCC+CGG | 0.531700 | 8_1:-86313086 | Msa1222110:CDS |
| GAAAGAACAGAGAAAACGAT+AGG | 0.539849 | 8_1:+86314845 | None:intergenic |
| CTTTACCGAGTCATGGTGTG+TGG | 0.556818 | 8_1:-86311771 | Msa1222110:three_prime_UTR |
| GTCTGTCTCACTCATGGCGG+AGG | 0.557442 | 8_1:-86314800 | Msa1222110:intron |
| GATCGAGTCTGTCTCACTCA+TGG | 0.575198 | 8_1:-86314806 | Msa1222110:exon |
| TGTAGCGAGTGAAACAGTGC+CGG | 0.576683 | 8_1:+86313254 | None:intergenic |
| AATTATTGCAGGTTGACAAG+TGG | 0.580545 | 8_1:-86311926 | Msa1222110:intron |
| GTAGCGAGTGAAACAGTGCC+GGG | 0.582425 | 8_1:+86313255 | None:intergenic |
| GGGATGCTTACCCATTCACC+GGG | 0.582773 | 8_1:+86313068 | None:intergenic |
| ATTCACCGGGGCAAAGAGAA+CGG | 0.617282 | 8_1:+86313081 | None:intergenic |
| AAACACACATGCTTTCAAAG+AGG | 0.618056 | 8_1:+86311870 | None:intergenic |
| TGGAATGAACAGAGGGACAA+TGG | 0.619086 | 8_1:-86311906 | Msa1222110:CDS |
| TCCATGTCTCAGAAGTCACA+AGG | 0.620749 | 8_1:+86311842 | None:intergenic |
| TTCCTACAACTAATCAAACC+CGG | 0.624103 | 8_1:-86313273 | Msa1222110:CDS |
| TTGATCCACACACCATGACT+CGG | 0.629492 | 8_1:+86311766 | None:intergenic |
| TGACAAGTGGAATGAACAGA+GGG | 0.629992 | 8_1:-86311913 | Msa1222110:CDS |
| ACAGTAAAAGGTGAAAACTC+AGG | 0.633665 | 8_1:-86313131 | Msa1222110:CDS |
| TTGACAAGTGGAATGAACAG+AGG | 0.706038 | 8_1:-86311914 | Msa1222110:CDS |
| CCATGTCTCAGAAGTCACAA+GGG | 0.710508 | 8_1:+86311843 | None:intergenic |
| GGATGCTTACCCATTCACCG+GGG | 0.811773 | 8_1:+86313069 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAATTAAAAATGAATATT+GGG | + | chr8_1:86311769-86311788 | None:intergenic | 10.0% |
| !! | TTGAAATTAAAAATGAATAT+TGG | + | chr8_1:86311770-86311789 | None:intergenic | 10.0% |
| !!! | TTTTAGCTTATATTAATTAA+GGG | + | chr8_1:86312400-86312419 | None:intergenic | 10.0% |
| !!! | TTTTTAGCTTATATTAATTA+AGG | + | chr8_1:86312401-86312420 | None:intergenic | 10.0% |
| !! | ATTAAAATTAAAACACAAAT+GGG | + | chr8_1:86313128-86313147 | None:intergenic | 10.0% |
| !! | ATAATTTGAATAAGATAAAT+TGG | - | chr8_1:86314166-86314185 | Msa1222110:intron | 10.0% |
| !! | AAGCTAAAAATACATATATT+TGG | - | chr8_1:86312311-86312330 | Msa1222110:intron | 15.0% |
| !!! | TTTAGCTTATATTAATTAAG+GGG | + | chr8_1:86312399-86312418 | None:intergenic | 15.0% |
| !! | AAGCTAAAAATACATATATT+TGG | - | chr8_1:86312311-86312330 | Msa1222110:intron | 15.0% |
| !! | TAGATTTAAGAATTTACAAT+CGG | + | chr8_1:86312492-86312511 | None:intergenic | 15.0% |
| !! | TTGTAAATTCTTAAATCTAT+TGG | - | chr8_1:86312493-86312512 | Msa1222110:intron | 15.0% |
| !! | CATTAAAATTAAAACACAAA+TGG | + | chr8_1:86313129-86313148 | None:intergenic | 15.0% |
| !! | AGTAAATATATTGAATCTTA+TGG | + | chr8_1:86313897-86313916 | None:intergenic | 15.0% |
| !!! | TTCATTATAATATTTTGCAA+CGG | + | chr8_1:86314531-86314550 | None:intergenic | 15.0% |
| !! | TTACTCTTAAACTAATCTTT+AGG | - | chr8_1:86312244-86312263 | Msa1222110:intron | 20.0% |
| !! | TTGACAATTTCAAAACTATA+AGG | - | chr8_1:86312524-86312543 | Msa1222110:intron | 20.0% |
| !! | CTACCATTAAATTAAATTGT+TGG | + | chr8_1:86312603-86312622 | None:intergenic | 20.0% |
| !! | TATAAAGAAAATAACCATTG+TGG | + | chr8_1:86312773-86312792 | None:intergenic | 20.0% |
| !!! | TTTTGTGATAACAAAGATAT+AGG | + | chr8_1:86312829-86312848 | None:intergenic | 20.0% |
| !! | ACAAGATATAAAGATATATG+TGG | + | chr8_1:86313152-86313171 | None:intergenic | 20.0% |
| !! | TTTACATTAAGGTAAATTTG+CGG | + | chr8_1:86313540-86313559 | None:intergenic | 20.0% |
| !! | TAACATCAATCTTTACATTA+AGG | + | chr8_1:86313551-86313570 | None:intergenic | 20.0% |
| !!! | AGTTTTAAACATTTAAGAAC+TGG | - | chr8_1:86313633-86313652 | Msa1222110:intron | 20.0% |
| !! | AAATATATTGAATCTTATGG+AGG | + | chr8_1:86313894-86313913 | None:intergenic | 20.0% |
| !!! | AAATTTTAAATAGCGAAACA+CGG | + | chr8_1:86314567-86314586 | None:intergenic | 20.0% |
| !! | AAAATAGTTTCAAGAATTTG+TGG | + | chr8_1:86314812-86314831 | None:intergenic | 20.0% |
| ! | AATTACTGAAAAGCGAAAAA+AGG | + | chr8_1:86311801-86311820 | None:intergenic | 25.0% |
| ! | AAATAGTCAAAGGAAACAAA+AGG | + | chr8_1:86311899-86311918 | None:intergenic | 25.0% |
| !! | TTTTAAATTAATGTCGTTGC+TGG | - | chr8_1:86311985-86312004 | Msa1222110:intron | 25.0% |
| ! | TAAGCAATGTTATTAGATAC+AGG | + | chr8_1:86312105-86312124 | None:intergenic | 25.0% |
| ! | TTGCTTATTGTCAAATTAGA+AGG | - | chr8_1:86312118-86312137 | Msa1222110:intron | 25.0% |
| !!! | CATCTTTGAAATATGCAAAT+AGG | + | chr8_1:86312183-86312202 | None:intergenic | 25.0% |
| !! | TGAAAATCCAAAAAGTACAA+GGG | + | chr8_1:86312271-86312290 | None:intergenic | 25.0% |
| !! | TTGAAAATCCAAAAAGTACA+AGG | + | chr8_1:86312272-86312291 | None:intergenic | 25.0% |
| ! | AGAAATGATATCGTTGAATA+GGG | + | chr8_1:86312370-86312389 | None:intergenic | 25.0% |
| !! | TCGCCAACAATTTAATTTAA+TGG | - | chr8_1:86312597-86312616 | Msa1222110:intron | 25.0% |
| !! | AATGGTAGTTTTTGTTAGTA+TGG | - | chr8_1:86312615-86312634 | Msa1222110:intron | 25.0% |
| ! | AGCACACTATAAAATGATTA+TGG | + | chr8_1:86312683-86312702 | None:intergenic | 25.0% |
| !! | ATAATCATTTTATAGTGTGC+TGG | - | chr8_1:86312682-86312701 | Msa1222110:intron | 25.0% |
| ! | AAAAAATAAATTAATCCCCG+AGG | + | chr8_1:86312739-86312758 | None:intergenic | 25.0% |
| ! | TATGTAAATTGTGTCATAGA+GGG | + | chr8_1:86312957-86312976 | None:intergenic | 25.0% |
| ! | ATATGTAAATTGTGTCATAG+AGG | + | chr8_1:86312958-86312977 | None:intergenic | 25.0% |
| ! | ATTCATTGCTTAAAACTACA+TGG | - | chr8_1:86313056-86313075 | Msa1222110:intron | 25.0% |
| ! | TTAATCGTGACTTTAATTAC+AGG | - | chr8_1:86313365-86313384 | Msa1222110:intron | 25.0% |
| ! | TGCTAATGAAACAAAGTTAA+GGG | + | chr8_1:86313480-86313499 | None:intergenic | 25.0% |
| ! | TTGCTAATGAAACAAAGTTA+AGG | + | chr8_1:86313481-86313500 | None:intergenic | 25.0% |
| !! | CTTAAATGTTTAAAACTAGC+TGG | + | chr8_1:86313630-86313649 | None:intergenic | 25.0% |
| ! | AAAAAGTTGAGAATTGAACT+GGG | + | chr8_1:86313693-86313712 | None:intergenic | 25.0% |
| ! | TAAAAAGTTGAGAATTGAAC+TGG | + | chr8_1:86313694-86313713 | None:intergenic | 25.0% |
| !! | TTCTCAACTTTTTATGCATT+TGG | - | chr8_1:86313700-86313719 | Msa1222110:intron | 25.0% |
| ! | CAATTAGTACTACTACATAA+GGG | + | chr8_1:86313730-86313749 | None:intergenic | 25.0% |
| ! | TCAATTAGTACTACTACATA+AGG | + | chr8_1:86313731-86313750 | None:intergenic | 25.0% |
| ! | TATTCTAGTACATCGTTTAA+TGG | - | chr8_1:86313780-86313799 | Msa1222110:intron | 25.0% |
| !! | TGTTTGCTGATATATTATTC+TGG | - | chr8_1:86313821-86313840 | Msa1222110:intron | 25.0% |
| !!! | CTGATATATTATTCTGGTTT+TGG | - | chr8_1:86313827-86313846 | Msa1222110:intron | 25.0% |
| !!! | TCTTTAGGATTTTACATGTT+AGG | - | chr8_1:86313964-86313983 | Msa1222110:intron | 25.0% |
| !! | CAATTTTCTTTGTTGACAAA+TGG | - | chr8_1:86313987-86314006 | Msa1222110:intron | 25.0% |
| !!! | AGTATTGACTAGAATAATGA+TGG | - | chr8_1:86314030-86314049 | Msa1222110:intron | 25.0% |
| ! | TTCATTGAAGATAAATGTCT+AGG | + | chr8_1:86314074-86314093 | None:intergenic | 25.0% |
| ! | ATCATAGTTACAATTTACCA+AGG | + | chr8_1:86314245-86314264 | None:intergenic | 25.0% |
| ! | AAAAATACAGACATCGAAAT+TGG | + | chr8_1:86314282-86314301 | None:intergenic | 25.0% |
| !!! | CTGTATTTTTTGTTAGGATT+AGG | - | chr8_1:86314292-86314311 | Msa1222110:intron | 25.0% |
| ! | TGTCTAGAGATTAATTAGAA+GGG | + | chr8_1:86314374-86314393 | None:intergenic | 25.0% |
| ! | ATGTCTAGAGATTAATTAGA+AGG | + | chr8_1:86314375-86314394 | None:intergenic | 25.0% |
| ! | TTTGTGACAAATTTGAATTC+TGG | - | chr8_1:86314489-86314508 | Msa1222110:intron | 25.0% |
| GAATATGCAAAAGCGAAAAT+GGG | + | chr8_1:86311835-86311854 | None:intergenic | 30.0% | |
| TGAATATGCAAAAGCGAAAA+TGG | + | chr8_1:86311836-86311855 | None:intergenic | 30.0% | |
| CTCCACATAATTCAAAATCA+GGG | + | chr8_1:86312062-86312081 | None:intergenic | 30.0% | |
| ATTAGATACAGGTTAGTAGA+AGG | + | chr8_1:86312094-86312113 | None:intergenic | 30.0% | |
| TTTAATGACGTCAAGCAAAT+TGG | + | chr8_1:86312145-86312164 | None:intergenic | 30.0% | |
| TGTCTAACCTTTACAATTTC+AGG | - | chr8_1:86312207-86312226 | Msa1222110:intron | 30.0% | |
| GTCTAACCTTTACAATTTCA+GGG | - | chr8_1:86312208-86312227 | Msa1222110:intron | 30.0% | |
| TCTAACCTTTACAATTTCAG+GGG | - | chr8_1:86312209-86312228 | Msa1222110:intron | 30.0% | |
| !!! | TTTTAGCTTATATTCGAGAC+TGG | + | chr8_1:86312300-86312319 | None:intergenic | 30.0% |
| CAGAAATGATATCGTTGAAT+AGG | + | chr8_1:86312371-86312390 | None:intergenic | 30.0% | |
| CTCTACTTAATCAAACCAAA+AGG | - | chr8_1:86312644-86312663 | Msa1222110:intron | 30.0% | |
| !! | TTTGAATATTGACTCCACAA+TGG | - | chr8_1:86312756-86312775 | Msa1222110:intron | 30.0% |
| AAACTAGAACCAACATTAGA+CGG | + | chr8_1:86312916-86312935 | None:intergenic | 30.0% | |
| ! | TTACGTTTTCTTCGTTCTTA+TGG | - | chr8_1:86313009-86313028 | Msa1222110:intron | 30.0% |
| AAGCAACACAATATTAAGTC+AGG | + | chr8_1:86313189-86313208 | None:intergenic | 30.0% | |
| TCTTAACTTACTGGATTACA+TGG | - | chr8_1:86313504-86313523 | Msa1222110:intron | 30.0% | |
| GTGAAACTTAATGCGATTTA+TGG | - | chr8_1:86313571-86313590 | Msa1222110:intron | 30.0% | |
| ! | AAATGTTTAAAACTAGCTGG+TGG | + | chr8_1:86313627-86313646 | None:intergenic | 30.0% |
| ATAAAGGGCTAACAGATAAA+TGG | + | chr8_1:86313865-86313884 | None:intergenic | 30.0% | |
| TTATGGAGGTTTGACATAAA+GGG | + | chr8_1:86313880-86313899 | None:intergenic | 30.0% | |
| CTTATTATCTCCATGACTAA+TGG | - | chr8_1:86313915-86313934 | Msa1222110:intron | 30.0% | |
| TGAAGATAAATGTCTAGGAA+GGG | + | chr8_1:86314069-86314088 | None:intergenic | 30.0% | |
| TTGAAGATAAATGTCTAGGA+AGG | + | chr8_1:86314070-86314089 | None:intergenic | 30.0% | |
| AGATTAATTTCAAGCAACCA+TGG | + | chr8_1:86314115-86314134 | None:intergenic | 30.0% | |
| TTAATCTTCATGCTTTGTAC+TGG | - | chr8_1:86314128-86314147 | Msa1222110:intron | 30.0% | |
| !!! | CGATGTCTGTATTTTTTGTT+AGG | - | chr8_1:86314286-86314305 | Msa1222110:intron | 30.0% |
| TCACAAAATTTGACCTAAGT+TGG | + | chr8_1:86314476-86314495 | None:intergenic | 30.0% | |
| TGTTTGATGCAAATTATTGC+AGG | - | chr8_1:86314588-86314607 | Msa1222110:intron | 30.0% | |
| GAAATTCTTGAACATTCTGT+TGG | - | chr8_1:86314704-86314723 | Msa1222110:intron | 30.0% | |
| ACAGAGAAAACGATAGGAAA+TGG | + | chr8_1:86311677-86311696 | None:intergenic | 35.0% | |
| GAAAGAACAGAGAAAACGAT+AGG | + | chr8_1:86311683-86311702 | None:intergenic | 35.0% | |
| ! | TGAATATTGGGTTGTGATTC+AGG | + | chr8_1:86311757-86311776 | None:intergenic | 35.0% |
| CAGGAAGGAAAAATAGTCAA+AGG | + | chr8_1:86311909-86311928 | None:intergenic | 35.0% | |
| AGAACTACATGCAATCTTAC+AGG | + | chr8_1:86311928-86311947 | None:intergenic | 35.0% | |
| ! | AGCCCTGATTTTGAATTATG+TGG | - | chr8_1:86312057-86312076 | Msa1222110:intron | 35.0% |
| GCTCCACATAATTCAAAATC+AGG | + | chr8_1:86312063-86312082 | None:intergenic | 35.0% | |
| CTAACCTTTACAATTTCAGG+GGG | - | chr8_1:86312210-86312229 | Msa1222110:intron | 35.0% | |
| ATTACCCCCTGAAATTGTAA+AGG | + | chr8_1:86312217-86312236 | None:intergenic | 35.0% | |
| TTACAATTTCAGGGGGTAAT+TGG | - | chr8_1:86312217-86312236 | Msa1222110:intron | 35.0% | |
| ! | TTTAGGTCCCTTGTACTTTT+TGG | - | chr8_1:86312261-86312280 | Msa1222110:intron | 35.0% |
| ! | AAGGACGCAAAAAAGTACAA+GGG | + | chr8_1:86312443-86312462 | None:intergenic | 35.0% |
| ! | TAAGGACGCAAAAAAGTACA+AGG | + | chr8_1:86312444-86312463 | None:intergenic | 35.0% |
| CCATTAGAGGACTGATTATA+AGG | + | chr8_1:86312462-86312481 | None:intergenic | 35.0% | |
| CCTTATAATCAGTCCTCTAA+TGG | - | chr8_1:86312459-86312478 | Msa1222110:intron | 35.0% | |
| ATAATCAGTCCTCTAATGGT+AGG | - | chr8_1:86312463-86312482 | Msa1222110:intron | 35.0% | |
| TAATCAGTCCTCTAATGGTA+GGG | - | chr8_1:86312464-86312483 | Msa1222110:intron | 35.0% | |
| TATAAGGACCTTAGTTTCAG+TGG | - | chr8_1:86312540-86312559 | Msa1222110:intron | 35.0% | |
| TGAACATCCCACAAAATGAA+AGG | - | chr8_1:86312572-86312591 | Msa1222110:intron | 35.0% | |
| ! | GGCTATTAATTCAGACCTTT+TGG | + | chr8_1:86312662-86312681 | None:intergenic | 35.0% |
| ! | ATCATTTTATAGTGTGCTGG+TGG | - | chr8_1:86312685-86312704 | Msa1222110:intron | 35.0% |
| TTAAGTTAGCCGTCTAATGT+TGG | - | chr8_1:86312904-86312923 | Msa1222110:intron | 35.0% | |
| !!! | GTTTTTAGCTCAATCTGGAA+AGG | + | chr8_1:86313212-86313231 | None:intergenic | 35.0% |
| GTAGGAAAACGAAAATCAAC+AGG | + | chr8_1:86313239-86313258 | None:intergenic | 35.0% | |
| TTCCTACAACTAATCAAACC+CGG | - | chr8_1:86313252-86313271 | Msa1222110:CDS | 35.0% | |
| ACAGTAAAAGGTGAAAACTC+AGG | - | chr8_1:86313394-86313413 | Msa1222110:intron | 35.0% | |
| TAGCAAGCTTCTTAACTTAC+TGG | - | chr8_1:86313495-86313514 | Msa1222110:intron | 35.0% | |
| ACTTACTGGATTACATGGTT+CGG | - | chr8_1:86313509-86313528 | Msa1222110:intron | 35.0% | |
| ! | TTTAAAACTAGCTGGTGGAA+AGG | + | chr8_1:86313622-86313641 | None:intergenic | 35.0% |
| CTTATGGAGGTTTGACATAA+AGG | + | chr8_1:86313881-86313900 | None:intergenic | 35.0% | |
| TAGACGACATACATAAGACA+CGG | + | chr8_1:86313942-86313961 | None:intergenic | 35.0% | |
| !! | TGTATGTCGTCTAGTTCTTT+AGG | - | chr8_1:86313949-86313968 | Msa1222110:intron | 35.0% |
| TTTACCAAGGACTGATGTAT+GGG | + | chr8_1:86314232-86314251 | None:intergenic | 35.0% | |
| ATTTACCAAGGACTGATGTA+TGG | + | chr8_1:86314233-86314252 | None:intergenic | 35.0% | |
| ! | ATTAGGCTAGTGAATTTGCT+TGG | - | chr8_1:86314309-86314328 | Msa1222110:intron | 35.0% |
| CTAGAGATTAATTAGAAGGG+CGG | + | chr8_1:86314371-86314390 | None:intergenic | 35.0% | |
| !! | AAGTTGGTCTTTGCAAAACT+GGG | + | chr8_1:86314460-86314479 | None:intergenic | 35.0% |
| !! | TAAGTTGGTCTTTGCAAAAC+TGG | + | chr8_1:86314461-86314480 | None:intergenic | 35.0% |
| ! | AGTTTTGCAAAGACCAACTT+AGG | - | chr8_1:86314460-86314479 | Msa1222110:intron | 35.0% |
| ! | AATTATTGCAGGTTGACAAG+TGG | - | chr8_1:86314599-86314618 | Msa1222110:intron | 35.0% |
| AAACACACATGCTTTCAAAG+AGG | + | chr8_1:86314658-86314677 | None:intergenic | 35.0% | |
| TGATTATCTTTACCGAGTCA+TGG | - | chr8_1:86314747-86314766 | Msa1222110:intron | 35.0% | |
| TGCAAAAGCGAAAATGGGAA+AGG | + | chr8_1:86311830-86311849 | None:intergenic | 40.0% | |
| CTACATGCAATCTTACAGGA+AGG | + | chr8_1:86311924-86311943 | None:intergenic | 40.0% | |
| TTGAATTATGTGGAGCAGCT+TGG | - | chr8_1:86312067-86312086 | Msa1222110:intron | 40.0% | |
| !! | TTTTATAGTGTGCTGGTGGA+CGG | - | chr8_1:86312689-86312708 | Msa1222110:intron | 40.0% |
| TCAATATGTCACAACTGCCT+CGG | - | chr8_1:86312719-86312738 | Msa1222110:intron | 40.0% | |
| CGCTGTGATCAAATGTCAAA+AGG | + | chr8_1:86312882-86312901 | None:intergenic | 40.0% | |
| TAAGTCAGGAAAAAGACTGC+AGG | + | chr8_1:86313175-86313194 | None:intergenic | 40.0% | |
| !!! | GTGCTGTTTTTAGCTCAATC+TGG | + | chr8_1:86313217-86313236 | None:intergenic | 40.0% |
| TGAACATATAGCCAAGAGTC+AGG | + | chr8_1:86313318-86313337 | None:intergenic | 40.0% | |
| TACAGGTGCATGACAGTAAA+AGG | - | chr8_1:86313382-86313401 | Msa1222110:intron | 40.0% | |
| GCAAAGAGAACGGTAGTATT+TGG | + | chr8_1:86313437-86313456 | None:intergenic | 40.0% | |
| CTTACTGGATTACATGGTTC+GGG | - | chr8_1:86313510-86313529 | Msa1222110:intron | 40.0% | |
| !! | TTAACTTGTTCCAAGAGCCA+TGG | - | chr8_1:86314095-86314114 | Msa1222110:intron | 40.0% |
| GTAATCACTAGTGTCATGCA+TGG | + | chr8_1:86314417-86314436 | None:intergenic | 40.0% | |
| TTGACAAGTGGAATGAACAG+AGG | - | chr8_1:86314611-86314630 | Msa1222110:intron | 40.0% | |
| TGACAAGTGGAATGAACAGA+GGG | - | chr8_1:86314612-86314631 | Msa1222110:intron | 40.0% | |
| TCATGGTGTGTGGATCAATA+AGG | - | chr8_1:86314764-86314783 | Msa1222110:intron | 40.0% | |
| AATCGGATCCCTACCATTAG+AGG | + | chr8_1:86312475-86312494 | None:intergenic | 45.0% | |
| AAGGACCTTAGTTTCAGTGG+AGG | - | chr8_1:86312543-86312562 | Msa1222110:intron | 45.0% | |
| ACAAGCCTCCACTGAAACTA+AGG | + | chr8_1:86312551-86312570 | None:intergenic | 45.0% | |
| ! | GGCGAGTCCTTTCATTTTGT+GGG | + | chr8_1:86312582-86312601 | None:intergenic | 45.0% |
| ! | TGGCGAGTCCTTTCATTTTG+TGG | + | chr8_1:86312583-86312602 | None:intergenic | 45.0% |
| CAATATGTCACAACTGCCTC+GGG | - | chr8_1:86312720-86312739 | Msa1222110:intron | 45.0% | |
| AATATGTCACAACTGCCTCG+GGG | - | chr8_1:86312721-86312740 | Msa1222110:intron | 45.0% | |
| ! | TGCCGGGTTTGATTAGTTGT+AGG | + | chr8_1:86313257-86313276 | None:intergenic | 45.0% |
| CTCGCTACATAGAGTTTCAC+AGG | - | chr8_1:86313285-86313304 | Msa1222110:CDS | 45.0% | |
| GCTACATAGAGTTTCACAGG+TGG | - | chr8_1:86313288-86313307 | Msa1222110:CDS | 45.0% | |
| AAGACACGGTCCATTAGTCA+TGG | + | chr8_1:86313928-86313947 | None:intergenic | 45.0% | |
| TTTCAAGCAACCATGGCTCT+TGG | + | chr8_1:86314108-86314127 | None:intergenic | 45.0% | |
| TGGAATGAACAGAGGGACAA+TGG | - | chr8_1:86314619-86314638 | Msa1222110:intron | 45.0% | |
| ! | AGGGACAATGGTACTTTTCC+AGG | - | chr8_1:86314631-86314650 | Msa1222110:intron | 45.0% |
| ACATGCTTTCAAAGAGGTCC+TGG | + | chr8_1:86314652-86314671 | None:intergenic | 45.0% | |
| CCATGTCTCAGAAGTCACAA+GGG | + | chr8_1:86314685-86314704 | None:intergenic | 45.0% | |
| TCCATGTCTCAGAAGTCACA+AGG | + | chr8_1:86314686-86314705 | None:intergenic | 45.0% | |
| TTGATCCACACACCATGACT+CGG | + | chr8_1:86314762-86314781 | None:intergenic | 45.0% | |
| GATCGAGTCTGTCTCACTCA+TGG | - | chr8_1:86311719-86311738 | Msa1222110:three_prime_UTR | 50.0% | |
| TGTAGCGAGTGAAACAGTGC+CGG | + | chr8_1:86313274-86313293 | None:intergenic | 50.0% | |
| ! | CAGGTGGATTTCCTGACTCT+TGG | - | chr8_1:86313304-86313323 | Msa1222110:CDS | 50.0% |
| TACTACCGTTCTCTTTGCCC+CGG | - | chr8_1:86313439-86313458 | Msa1222110:intron | 50.0% | |
| ATTCACCGGGGCAAAGAGAA+CGG | + | chr8_1:86313447-86313466 | None:intergenic | 50.0% | |
| TTCTCTTTGCCCCGGTGAAT+GGG | - | chr8_1:86313447-86313466 | Msa1222110:intron | 50.0% | |
| AGGGATGCTTACCCATTCAC+CGG | + | chr8_1:86313461-86313480 | None:intergenic | 50.0% | |
| TGTGCCCATACATCAGTCCT+TGG | - | chr8_1:86314225-86314244 | Msa1222110:intron | 50.0% | |
| TGTCATGCATGGAGTCTGCT+GGG | + | chr8_1:86314406-86314425 | None:intergenic | 50.0% | |
| !! | CCCTTGTGACTTCTGAGACA+TGG | - | chr8_1:86314682-86314701 | Msa1222110:intron | 50.0% |
| CTTTACCGAGTCATGGTGTG+TGG | - | chr8_1:86314754-86314773 | Msa1222110:intron | 50.0% | |
| CGAGTCTGTCTCACTCATGG+CGG | - | chr8_1:86311722-86311741 | Msa1222110:three_prime_UTR | 55.0% | |
| ! | TATAGTGTGCTGGTGGACGG+TGG | - | chr8_1:86312692-86312711 | Msa1222110:intron | 55.0% |
| GTAGCGAGTGAAACAGTGCC+GGG | + | chr8_1:86313273-86313292 | None:intergenic | 55.0% | |
| GTTCTCTTTGCCCCGGTGAA+TGG | - | chr8_1:86313446-86313465 | Msa1222110:intron | 55.0% | |
| GGATGCTTACCCATTCACCG+GGG | + | chr8_1:86313459-86313478 | None:intergenic | 55.0% | |
| GGGATGCTTACCCATTCACC+GGG | + | chr8_1:86313460-86313479 | None:intergenic | 55.0% | |
| GTGTCATGCATGGAGTCTGC+TGG | + | chr8_1:86314407-86314426 | None:intergenic | 55.0% | |
| GTCTGTCTCACTCATGGCGG+AGG | - | chr8_1:86311725-86311744 | Msa1222110:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 86311663 | 86314884 | 86311663 | ID=Msa1222110;Name=Msa1222110 |
| chr8_1 | mRNA | 86311663 | 86314884 | 86311663 | ID=Msa1222110-mRNA-1;Parent=Msa1222110;Name=Msa1222110-mRNA-1;_AED=0.03;_eAED=0.03;_QI=75|1|1|1|1|1|4|221|77 |
| chr8_1 | exon | 86311663 | 86311937 | 86311663 | ID=Msa1222110-mRNA-1:exon:31042;Parent=Msa1222110-mRNA-1 |
| chr8_1 | exon | 86313079 | 86313160 | 86313079 | ID=Msa1222110-mRNA-1:exon:31041;Parent=Msa1222110-mRNA-1 |
| chr8_1 | exon | 86313241 | 86313329 | 86313241 | ID=Msa1222110-mRNA-1:exon:31040;Parent=Msa1222110-mRNA-1 |
| chr8_1 | exon | 86314801 | 86314884 | 86314801 | ID=Msa1222110-mRNA-1:exon:31039;Parent=Msa1222110-mRNA-1 |
| chr8_1 | five_prime_UTR | 86314810 | 86314884 | 86314810 | ID=Msa1222110-mRNA-1:five_prime_utr;Parent=Msa1222110-mRNA-1 |
| chr8_1 | CDS | 86314801 | 86314809 | 86314801 | ID=Msa1222110-mRNA-1:cds;Parent=Msa1222110-mRNA-1 |
| chr8_1 | CDS | 86313241 | 86313329 | 86313241 | ID=Msa1222110-mRNA-1:cds;Parent=Msa1222110-mRNA-1 |
| chr8_1 | CDS | 86313079 | 86313160 | 86313079 | ID=Msa1222110-mRNA-1:cds;Parent=Msa1222110-mRNA-1 |
| chr8_1 | CDS | 86311884 | 86311937 | 86311884 | ID=Msa1222110-mRNA-1:cds;Parent=Msa1222110-mRNA-1 |
| chr8_1 | three_prime_UTR | 86311663 | 86311883 | 86311663 | ID=Msa1222110-mRNA-1:three_prime_utr;Parent=Msa1222110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
