AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1466790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1466790 MtrunA17_Chr3g0135201 97.794 136 3 0 1 136 384 519 4.41e-89 268
Msa1466790 MtrunA17_Chr1g0152061 92.537 134 10 0 1 134 389 522 1.46e-84 256
Msa1466790 MtrunA17_Chr4g0049291 85.821 134 19 0 1 134 390 523 3.07e-79 243
Msa1466790 MtrunA17_Chr6g0463581 73.684 133 35 0 1 133 64 196 5.00e-69 206
Msa1466790 MtrunA17_Chr6g0463781 68.627 102 32 0 1 102 104 205 7.65e-47 150
Msa1466790 MtrunA17_Chr5g0411591 80.952 84 16 0 11 94 35 118 4.67e-45 143
Msa1466790 MtrunA17_Chr7g0240231 77.381 84 19 0 9 92 33 116 1.41e-41 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1466790 AT4G37760.1 82.576 132 23 0 1 132 384 515 7.24e-73 226
Msa1466790 AT1G58440.1 77.778 135 30 0 1 135 390 524 1.46e-71 223
Msa1466790 AT2G22830.1 79.851 134 27 0 1 134 452 585 2.04e-62 201
Msa1466790 AT5G24150.1 47.794 136 71 0 1 136 378 513 9.68e-42 145
Msa1466790 AT5G24160.1 47.059 136 72 0 1 136 379 514 3.36e-40 140
Msa1466790 AT5G24160.3 47.059 136 72 0 1 136 302 437 5.79e-40 139
Msa1466790 AT5G24140.1 42.748 131 75 0 1 131 380 510 5.94e-35 126
Msa1466790 AT5G24150.2 51.000 100 49 0 1 100 378 477 4.63e-32 118

Find 47 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGACCAGTCTCTTTGCTTTC+AGG 0.135797 tig0048898:-675 Msa1466790:CDS
TCAACAAAAGTTAATGTATT+TGG 0.167062 tig0048898:+118 Msa1466790:intergenic
TGCTCCTGCCAACGTATTTA+TGG 0.226048 tig0048898:+794 Msa1466790:intergenic
ATTGAAACGTAAACATTATA+TGG 0.228307 tig0048898:-243 Msa1466790:three_prime_UTR
GATTCCTTCTGCCTTAATAA+TGG 0.268227 tig0048898:+413 Msa1466790:intergenic
AATCATCTTGCCCATTATTA+AGG 0.268603 tig0048898:-424 Msa1466790:CDS
TTCTTCGCTGTCGCGATATA+TGG 0.282244 tig0048898:-618 Msa1466790:CDS
TAATAAGCTGGAACAGTTGC+AGG 0.299507 tig0048898:+375 Msa1466790:intergenic
GGACGGAGGGAGTACATTGC+TGG 0.318839 tig0048898:-74 Msa1466790:three_prime_UTR
ATTCCGATCCATATGCGTTT+AGG 0.322929 tig0048898:+564 Msa1466790:intergenic
GCTTTGATTATCTGAGTCTT+GGG 0.327261 tig0048898:-713 Msa1466790:CDS
TTCCGATCCATATGCGTTTA+GGG 0.328350 tig0048898:+565 Msa1466790:intergenic
TGCTTTGATTATCTGAGTCT+TGG 0.344637 tig0048898:-714 Msa1466790:CDS
ATTCCTTCTGCCTTAATAAT+GGG 0.347292 tig0048898:+414 Msa1466790:intergenic
TACCTTACGCAAGGTATAGA+AGG 0.355066 tig0048898:+968 Msa1466790:intergenic
CCCAAAATATAAGCGAAAAT+TGG 0.361641 tig0048898:+95 Msa1466790:intergenic
TTCCTTCCCCTAAACGCATA+TGG 0.381663 tig0048898:-572 Msa1466790:CDS
AAAATGTGAAAACAAAATTC+AGG 0.386876 tig0048898:+30 Msa1466790:intergenic
AATAATGGGCAAGATGATTC+CGG 0.399527 tig0048898:+428 Msa1466790:intergenic
AAAACAATGCTAGCTCATCT+TGG 0.446371 tig0048898:+289 Msa1466790:intergenic
TAAATACAAATTTATGCAGC+TGG 0.461053 tig0048898:+342 Msa1466790:intergenic
CTTTGATTATCTGAGTCTTG+GGG 0.481559 tig0048898:-712 Msa1466790:CDS
GTATTTATGGTGGATGCCAC+TGG 0.494542 tig0048898:+807 Msa1466790:intergenic
TTGCAGGGAAGAACATTTGA+CGG 0.515683 tig0048898:+391 Msa1466790:intergenic
TCCACCATAAATACGTTGGC+AGG 0.517019 tig0048898:-798 Msa1466790:CDS
ATCCATATGCGTTTAGGGGA+AGG 0.518020 tig0048898:+570 Msa1466790:intergenic
GAAATGAAGAACCAAACTCA+GGG 0.539815 tig0048898:+638 Msa1466790:intergenic
GGAGGTGCTCTATAATAAGC+TGG 0.541029 tig0048898:+363 Msa1466790:intergenic
ATGCGTTTAGGGGAAGGAAA+TGG 0.541806 tig0048898:+576 Msa1466790:intergenic
TTGCCCATTATTAAGGCAGA+AGG 0.548504 tig0048898:-417 Msa1466790:CDS
ATCCTTCTATACCTTGCGTA+AGG 0.552810 tig0048898:-986 None:intergenic
AGAAATGAAGAACCAAACTC+AGG 0.560990 tig0048898:+637 Msa1466790:intergenic
AATCCTGAAAGCAAAGAGAC+TGG 0.569045 tig0048898:+672 Msa1466790:intergenic
TCCCCTAAACGCATATGGAT+CGG 0.569073 tig0048898:-567 Msa1466790:CDS
GACGGAGGGAGTACATTGCT+GGG 0.569413 tig0048898:-73 Msa1466790:three_prime_UTR
GTTGGCAGGAGCACTTTACA+AGG 0.579726 tig0048898:-784 Msa1466790:CDS
TTTGATTATCTGAGTCTTGG+GGG 0.589666 tig0048898:-711 Msa1466790:CDS
GCTGTCGCGATATATGGTGT+TGG 0.596308 tig0048898:-612 Msa1466790:CDS
AATAAGCTGGAACAGTTGCA+GGG 0.614063 tig0048898:+376 Msa1466790:intergenic
TTAAGGAATTACCTTACGCA+AGG 0.617927 tig0048898:+959 Msa1466790:intergenic
TCCGATCCATATGCGTTTAG+GGG 0.629892 tig0048898:+566 Msa1466790:intergenic
GAATACGTCTTTAAAAGTCA+AGG 0.643454 tig0048898:-317 Msa1466790:three_prime_UTR
GGCATCCACCATAAATACGT+TGG 0.644019 tig0048898:-802 Msa1466790:CDS
ATACAAATTTATGCAGCTGG+AGG 0.648738 tig0048898:+345 Msa1466780:intergenic
TCCTGCCAACGTATTTATGG+TGG 0.676661 tig0048898:+797 Msa1466780:intergenic
AATGAAGAACCAAACTCAGG+GGG 0.690809 tig0048898:+640 Msa1466780:intergenic
AAATGAAGAACCAAACTCAG+GGG 0.723277 tig0048898:+639 Msa1466780:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCAAAAGAAAAAAAATTA+AGG + tig0048898:84-103 Msa1466790:intergenic 10.0%
!!! TTTTTTTCTTTTGAATTAAA+AGG - tig0048898:88-107 Msa1466790:three_prime_UTR 10.0%
!!! ATTTTATTTGAATAAATTGT+TGG - tig0048898:497-516 Msa1466790:intron 10.0%
!! ATTCAAAAGAAAAAAAATTA+AGG + tig0048898:84-103 Msa1466790:intergenic 10.0%
!!! TTTTTTTCTTTTGAATTAAA+AGG - tig0048898:88-107 Msa1466790:three_prime_UTR 10.0%
!!! ATTTTATTTGAATAAATTGT+TGG - tig0048898:497-516 Msa1466790:intron 10.0%
!! ATTGAAACGTAAACATTATA+TGG - tig0048898:753-772 Msa1466790:CDS 20.0%
!!! CTTTTAAGTTTGATTCTTTA+TGG - tig0048898:776-795 Msa1466790:CDS 20.0%
!! TCAACAAAAGTTAATGTATT+TGG + tig0048898:881-900 Msa1466790:intergenic 20.0%
!! AAAATGTGAAAACAAAATTC+AGG + tig0048898:969-988 Msa1466790:intergenic 20.0%
!! ATTGAAACGTAAACATTATA+TGG - tig0048898:753-772 Msa1466790:CDS 20.0%
!!! CTTTTAAGTTTGATTCTTTA+TGG - tig0048898:776-795 Msa1466790:CDS 20.0%
!! TCAACAAAAGTTAATGTATT+TGG + tig0048898:881-900 Msa1466790:intergenic 20.0%
!! AAAATGTGAAAACAAAATTC+AGG + tig0048898:969-988 Msa1466790:intergenic 20.0%
! AAAAAATTAAGGTGAAGAAG+TGG + tig0048898:73-92 Msa1466790:intergenic 25.0%
!!! TTGGTTTTTGCAATTAAAGT+GGG + tig0048898:527-546 Msa1466790:intergenic 25.0%
!!! ATTGGTTTTTGCAATTAAAG+TGG + tig0048898:528-547 Msa1466790:intergenic 25.0%
! TAAATACAAATTTATGCAGC+TGG + tig0048898:657-676 Msa1466790:intergenic 25.0%
!! GTTTTCAGTTAGAAATCTAA+CGG - tig0048898:725-744 Msa1466790:CDS 25.0%
!!! TTTTTGTTTACATTTTGGGA+CGG + tig0048898:819-838 Msa1466790:intergenic 25.0%
!!! CCGATTTTTGTTTACATTTT+GGG + tig0048898:823-842 Msa1466790:intergenic 25.0%
! CCCAAAATGTAAACAAAAAT+CGG - tig0048898:820-839 Msa1466790:intron 25.0%
!!! ACCGATTTTTGTTTACATTT+TGG + tig0048898:824-843 Msa1466790:intergenic 25.0%
!! ACCAATTTTCGCTTATATTT+TGG - tig0048898:900-919 Msa1466790:intron 25.0%
!! CCAATTTTCGCTTATATTTT+GGG - tig0048898:901-920 Msa1466790:intron 25.0%
!! TTGTTTTCACATTTTATAGC+TGG - tig0048898:974-993 Msa1466790:CDS 25.0%
! AAAAAATTAAGGTGAAGAAG+TGG + tig0048898:73-92 Msa1466790:intergenic 25.0%
!!! TTGGTTTTTGCAATTAAAGT+GGG + tig0048898:527-546 Msa1466790:intergenic 25.0%
!!! ATTGGTTTTTGCAATTAAAG+TGG + tig0048898:528-547 Msa1466790:intergenic 25.0%
! TAAATACAAATTTATGCAGC+TGG + tig0048898:657-676 Msa1466790:intergenic 25.0%
!! GTTTTCAGTTAGAAATCTAA+CGG - tig0048898:725-744 Msa1466790:CDS 25.0%
!!! TTTTTGTTTACATTTTGGGA+CGG + tig0048898:819-838 Msa1466790:intergenic 25.0%
!!! CCGATTTTTGTTTACATTTT+GGG + tig0048898:823-842 Msa1466790:intergenic 25.0%
! CCCAAAATGTAAACAAAAAT+CGG - tig0048898:820-839 Msa1466790:intron 25.0%
!!! ACCGATTTTTGTTTACATTT+TGG + tig0048898:824-843 Msa1466790:intergenic 25.0%
!! ACCAATTTTCGCTTATATTT+TGG - tig0048898:900-919 Msa1466790:intron 25.0%
!! CCAATTTTCGCTTATATTTT+GGG - tig0048898:901-920 Msa1466790:intron 25.0%
!! TTGTTTTCACATTTTATAGC+TGG - tig0048898:974-993 Msa1466790:CDS 25.0%
TAAGGTAATTCCTTAAACTG+AGG - tig0048898:44-63 Msa1466790:three_prime_UTR 30.0%
!!! TTTTTTACTCTGCTTAATGC+TGG - tig0048898:140-159 Msa1466790:three_prime_UTR 30.0%
! TTTTTACTCTGCTTAATGCT+GGG - tig0048898:141-160 Msa1466790:three_prime_UTR 30.0%
ATATTTGAATATACAGCCAG+TGG - tig0048898:173-192 Msa1466790:three_prime_UTR 30.0%
! TGCAAAAACCAATTGTCTTT+TGG - tig0048898:535-554 Msa1466790:intron 30.0%
AATCATCTTGCCCATTATTA+AGG - tig0048898:572-591 Msa1466790:CDS 30.0%
ATTCCTTCTGCCTTAATAAT+GGG + tig0048898:585-604 Msa1466790:intergenic 30.0%
! GAATACGTCTTTAAAAGTCA+AGG - tig0048898:679-698 Msa1466790:CDS 30.0%
CCCAAAATATAAGCGAAAAT+TGG + tig0048898:904-923 Msa1466790:intergenic 30.0%
!! TTTTCGCTTATATTTTGGGA+CGG - tig0048898:905-924 Msa1466790:intron 30.0%
TAAGGTAATTCCTTAAACTG+AGG - tig0048898:44-63 Msa1466790:three_prime_UTR 30.0%
!!! TTTTTTACTCTGCTTAATGC+TGG - tig0048898:140-159 Msa1466790:three_prime_UTR 30.0%
! TTTTTACTCTGCTTAATGCT+GGG - tig0048898:141-160 Msa1466790:three_prime_UTR 30.0%
ATATTTGAATATACAGCCAG+TGG - tig0048898:173-192 Msa1466790:three_prime_UTR 30.0%
! TGCAAAAACCAATTGTCTTT+TGG - tig0048898:535-554 Msa1466790:intron 30.0%
AATCATCTTGCCCATTATTA+AGG - tig0048898:572-591 Msa1466790:CDS 30.0%
ATTCCTTCTGCCTTAATAAT+GGG + tig0048898:585-604 Msa1466790:intergenic 30.0%
! GAATACGTCTTTAAAAGTCA+AGG - tig0048898:679-698 Msa1466790:CDS 30.0%
CCCAAAATATAAGCGAAAAT+TGG + tig0048898:904-923 Msa1466790:intergenic 30.0%
!! TTTTCGCTTATATTTTGGGA+CGG - tig0048898:905-924 Msa1466790:intron 30.0%
TTAAGGAATTACCTTACGCA+AGG + tig0048898:40-59 Msa1466790:intergenic 35.0%
! ATTTCTTTTCTTGCTGGATC+AGG + tig0048898:252-271 Msa1466790:intergenic 35.0%
TGCTTTGATTATCTGAGTCT+TGG - tig0048898:282-301 Msa1466790:three_prime_UTR 35.0%
GCTTTGATTATCTGAGTCTT+GGG - tig0048898:283-302 Msa1466790:three_prime_UTR 35.0%
CTTTGATTATCTGAGTCTTG+GGG - tig0048898:284-303 Msa1466790:three_prime_UTR 35.0%
TTTGATTATCTGAGTCTTGG+GGG - tig0048898:285-304 Msa1466790:three_prime_UTR 35.0%
AAATGAAGAACCAAACTCAG+GGG + tig0048898:360-379 Msa1466790:intergenic 35.0%
GAAATGAAGAACCAAACTCA+GGG + tig0048898:361-380 Msa1466790:intergenic 35.0%
AGAAATGAAGAACCAAACTC+AGG + tig0048898:362-381 Msa1466790:intergenic 35.0%
TACGATTAATCGCTGTAAGT+AGG - tig0048898:454-473 Msa1466790:intron 35.0%
!!! CGCTGTAAGTAGGAATTTTT+TGG - tig0048898:464-483 Msa1466790:intron 35.0%
!! AATAATGGGCAAGATGATTC+CGG + tig0048898:571-590 Msa1466790:intergenic 35.0%
GATTCCTTCTGCCTTAATAA+TGG + tig0048898:586-605 Msa1466790:intergenic 35.0%
ATACAAATTTATGCAGCTGG+AGG + tig0048898:654-673 Msa1466790:intergenic 35.0%
AAAACAATGCTAGCTCATCT+TGG + tig0048898:710-729 Msa1466790:intergenic 35.0%
TTAAGGAATTACCTTACGCA+AGG + tig0048898:40-59 Msa1466790:intergenic 35.0%
! ATTTCTTTTCTTGCTGGATC+AGG + tig0048898:252-271 Msa1466790:intergenic 35.0%
TGCTTTGATTATCTGAGTCT+TGG - tig0048898:282-301 Msa1466790:three_prime_UTR 35.0%
GCTTTGATTATCTGAGTCTT+GGG - tig0048898:283-302 Msa1466790:three_prime_UTR 35.0%
CTTTGATTATCTGAGTCTTG+GGG - tig0048898:284-303 Msa1466790:three_prime_UTR 35.0%
TTTGATTATCTGAGTCTTGG+GGG - tig0048898:285-304 Msa1466790:three_prime_UTR 35.0%
AAATGAAGAACCAAACTCAG+GGG + tig0048898:360-379 Msa1466790:intergenic 35.0%
GAAATGAAGAACCAAACTCA+GGG + tig0048898:361-380 Msa1466790:intergenic 35.0%
AGAAATGAAGAACCAAACTC+AGG + tig0048898:362-381 Msa1466790:intergenic 35.0%
TACGATTAATCGCTGTAAGT+AGG - tig0048898:454-473 Msa1466790:intron 35.0%
!!! CGCTGTAAGTAGGAATTTTT+TGG - tig0048898:464-483 Msa1466790:intron 35.0%
!! AATAATGGGCAAGATGATTC+CGG + tig0048898:571-590 Msa1466790:intergenic 35.0%
GATTCCTTCTGCCTTAATAA+TGG + tig0048898:586-605 Msa1466790:intergenic 35.0%
ATACAAATTTATGCAGCTGG+AGG + tig0048898:654-673 Msa1466790:intergenic 35.0%
AAAACAATGCTAGCTCATCT+TGG + tig0048898:710-729 Msa1466790:intergenic 35.0%
ATCCTTCTATACCTTGCGTA+AGG - tig0048898:26-45 Msa1466790:three_prime_UTR 40.0%
TACCTTACGCAAGGTATAGA+AGG + tig0048898:31-50 Msa1466790:intergenic 40.0%
! TGACGCATTTCTTTTCTTGC+TGG + tig0048898:258-277 Msa1466790:intergenic 40.0%
!! CTTGGGGGTTTATTTTCAGA+AGG - tig0048898:300-319 Msa1466790:three_prime_UTR 40.0%
AATCCTGAAAGCAAAGAGAC+TGG + tig0048898:327-346 Msa1466790:intergenic 40.0%
AATGAAGAACCAAACTCAGG+GGG + tig0048898:359-378 Msa1466790:intergenic 40.0%
TTCCGATCCATATGCGTTTA+GGG + tig0048898:434-453 Msa1466790:intergenic 40.0%
ATTCCGATCCATATGCGTTT+AGG + tig0048898:435-454 Msa1466790:intergenic 40.0%
TTGCCCATTATTAAGGCAGA+AGG - tig0048898:579-598 Msa1466790:CDS 40.0%
TTGCAGGGAAGAACATTTGA+CGG + tig0048898:608-627 Msa1466790:intergenic 40.0%
AATAAGCTGGAACAGTTGCA+GGG + tig0048898:623-642 Msa1466790:intergenic 40.0%
TAATAAGCTGGAACAGTTGC+AGG + tig0048898:624-643 Msa1466790:intergenic 40.0%
ATCCTTCTATACCTTGCGTA+AGG - tig0048898:26-45 Msa1466790:three_prime_UTR 40.0%
TACCTTACGCAAGGTATAGA+AGG + tig0048898:31-50 Msa1466790:intergenic 40.0%
! TGACGCATTTCTTTTCTTGC+TGG + tig0048898:258-277 Msa1466790:intergenic 40.0%
!! CTTGGGGGTTTATTTTCAGA+AGG - tig0048898:300-319 Msa1466790:three_prime_UTR 40.0%
AATCCTGAAAGCAAAGAGAC+TGG + tig0048898:327-346 Msa1466790:intergenic 40.0%
AATGAAGAACCAAACTCAGG+GGG + tig0048898:359-378 Msa1466790:intergenic 40.0%
TTCCGATCCATATGCGTTTA+GGG + tig0048898:434-453 Msa1466790:intergenic 40.0%
ATTCCGATCCATATGCGTTT+AGG + tig0048898:435-454 Msa1466790:intergenic 40.0%
TTGCCCATTATTAAGGCAGA+AGG - tig0048898:579-598 Msa1466790:CDS 40.0%
TTGCAGGGAAGAACATTTGA+CGG + tig0048898:608-627 Msa1466790:intergenic 40.0%
AATAAGCTGGAACAGTTGCA+GGG + tig0048898:623-642 Msa1466790:intergenic 40.0%
TAATAAGCTGGAACAGTTGC+AGG + tig0048898:624-643 Msa1466790:intergenic 40.0%
GAAGTGGTTGCCTCAGTTTA+AGG + tig0048898:57-76 Msa1466790:intergenic 45.0%
!! GTATTTATGGTGGATGCCAC+TGG + tig0048898:192-211 Msa1466790:intergenic 45.0%
GGCATCCACCATAAATACGT+TGG - tig0048898:194-213 Msa1466790:three_prime_UTR 45.0%
TCCACCATAAATACGTTGGC+AGG - tig0048898:198-217 Msa1466790:three_prime_UTR 45.0%
TCCTGCCAACGTATTTATGG+TGG + tig0048898:202-221 Msa1466790:intergenic 45.0%
TGCTCCTGCCAACGTATTTA+TGG + tig0048898:205-224 Msa1466790:intergenic 45.0%
TTCTTCGCTGTCGCGATATA+TGG - tig0048898:378-397 Msa1466790:CDS 45.0%
ATGCGTTTAGGGGAAGGAAA+TGG + tig0048898:423-442 Msa1466790:intergenic 45.0%
TTCCTTCCCCTAAACGCATA+TGG - tig0048898:424-443 Msa1466790:CDS 45.0%
ATCCATATGCGTTTAGGGGA+AGG + tig0048898:429-448 Msa1466790:intergenic 45.0%
TCCCCTAAACGCATATGGAT+CGG - tig0048898:429-448 Msa1466790:CDS 45.0%
TCCGATCCATATGCGTTTAG+GGG + tig0048898:433-452 Msa1466790:intergenic 45.0%
GCACTCTGCCAAAAGACAAT+TGG + tig0048898:546-565 Msa1466790:intergenic 45.0%
!! GGAGGTGCTCTATAATAAGC+TGG + tig0048898:636-655 Msa1466790:intergenic 45.0%
!!! TCGCTTATATTTTGGGACGG+AGG - tig0048898:908-927 Msa1466790:intron 45.0%
!!! CGCTTATATTTTGGGACGGA+GGG - tig0048898:909-928 Msa1466790:intron 45.0%
GAAGTGGTTGCCTCAGTTTA+AGG + tig0048898:57-76 Msa1466790:intergenic 45.0%
!! GTATTTATGGTGGATGCCAC+TGG + tig0048898:192-211 Msa1466790:intergenic 45.0%
GGCATCCACCATAAATACGT+TGG - tig0048898:194-213 Msa1466790:three_prime_UTR 45.0%
TCCACCATAAATACGTTGGC+AGG - tig0048898:198-217 Msa1466790:three_prime_UTR 45.0%
TCCTGCCAACGTATTTATGG+TGG + tig0048898:202-221 Msa1466790:intergenic 45.0%
TGCTCCTGCCAACGTATTTA+TGG + tig0048898:205-224 Msa1466790:intergenic 45.0%
TTCTTCGCTGTCGCGATATA+TGG - tig0048898:378-397 Msa1466790:CDS 45.0%
ATGCGTTTAGGGGAAGGAAA+TGG + tig0048898:423-442 Msa1466790:intergenic 45.0%
TTCCTTCCCCTAAACGCATA+TGG - tig0048898:424-443 Msa1466790:CDS 45.0%
ATCCATATGCGTTTAGGGGA+AGG + tig0048898:429-448 Msa1466790:intergenic 45.0%
TCCCCTAAACGCATATGGAT+CGG - tig0048898:429-448 Msa1466790:CDS 45.0%
TCCGATCCATATGCGTTTAG+GGG + tig0048898:433-452 Msa1466790:intergenic 45.0%
GCACTCTGCCAAAAGACAAT+TGG + tig0048898:546-565 Msa1466790:intergenic 45.0%
!! GGAGGTGCTCTATAATAAGC+TGG + tig0048898:636-655 Msa1466790:intergenic 45.0%
!!! TCGCTTATATTTTGGGACGG+AGG - tig0048898:908-927 Msa1466790:intron 45.0%
!!! CGCTTATATTTTGGGACGGA+GGG - tig0048898:909-928 Msa1466790:intron 45.0%
!! GTTGGCAGGAGCACTTTACA+AGG - tig0048898:212-231 Msa1466790:three_prime_UTR 50.0%
GGACCAGTCTCTTTGCTTTC+AGG - tig0048898:321-340 Msa1466790:three_prime_UTR 50.0%
GCTGTCGCGATATATGGTGT+TGG - tig0048898:384-403 Msa1466790:CDS 50.0%
! GTCTTTTGGCAGAGTGCATC+CGG - tig0048898:549-568 Msa1466790:intron 50.0%
!! GTTGGCAGGAGCACTTTACA+AGG - tig0048898:212-231 Msa1466790:three_prime_UTR 50.0%
GGACCAGTCTCTTTGCTTTC+AGG - tig0048898:321-340 Msa1466790:three_prime_UTR 50.0%
GCTGTCGCGATATATGGTGT+TGG - tig0048898:384-403 Msa1466790:CDS 50.0%
! GTCTTTTGGCAGAGTGCATC+CGG - tig0048898:549-568 Msa1466790:intron 50.0%
! GACGGAGGGAGTACATTGCT+GGG - tig0048898:923-942 Msa1466790:intron 55.0%
! GACGGAGGGAGTACATTGCT+GGG - tig0048898:923-942 Msa1466790:intron 55.0%
AAACCCTCGCCCCCTGAGTT+TGG - tig0048898:347-366 Msa1466790:exon 60.0%
GAACCAAACTCAGGGGGCGA+GGG + tig0048898:353-372 Msa1466790:intergenic 60.0%
AGAACCAAACTCAGGGGGCG+AGG + tig0048898:354-373 Msa1466790:intergenic 60.0%
! GGACGGAGGGAGTACATTGC+TGG - tig0048898:922-941 Msa1466790:intron 60.0%
AAACCCTCGCCCCCTGAGTT+TGG - tig0048898:347-366 Msa1466790:exon 60.0%
GAACCAAACTCAGGGGGCGA+GGG + tig0048898:353-372 Msa1466790:intergenic 60.0%
AGAACCAAACTCAGGGGGCG+AGG + tig0048898:354-373 Msa1466790:intergenic 60.0%
! GGACGGAGGGAGTACATTGC+TGG - tig0048898:922-941 Msa1466790:intron 60.0%
Chromosome Type Strat End Strand Name
tig0048898 gene 21 997 21 ID=Msa1466790;Name=Msa1466790
tig0048898 mRNA 21 997 21 ID=Msa1466790-mRNA-1;Parent=Msa1466790;Name=Msa1466790-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|1|1|1|1|3|332|136
tig0048898 exon 21 457 21 ID=Msa1466790-mRNA-1:exon:25147;Parent=Msa1466790-mRNA-1
tig0048898 exon 551 829 551 ID=Msa1466790-mRNA-1:exon:25146;Parent=Msa1466790-mRNA-1
tig0048898 exon 971 997 971 ID=Msa1466790-mRNA-1:exon:25145;Parent=Msa1466790-mRNA-1
tig0048898 CDS 971 997 971 ID=Msa1466790-mRNA-1:cds;Parent=Msa1466790-mRNA-1
tig0048898 CDS 551 829 551 ID=Msa1466790-mRNA-1:cds;Parent=Msa1466790-mRNA-1
tig0048898 CDS 353 457 353 ID=Msa1466790-mRNA-1:cds;Parent=Msa1466790-mRNA-1
tig0048898 three_prime_UTR 21 352 21 ID=Msa1466790-mRNA-1:three_prime_utr;Parent=Msa1466790-mRNA-1
Gene Sequence

>Msa1466790

CTTGAATCCTTCTATACCTTGCGTAAGCCAGTGGCATCCACCATAAATACGTTGGCAGGAGCACTTTACAAGGTTTTCTGTGCATCACCTGATCCAGCAAGAAAAGAAATGCGTCAAGCTTGCTTTGATTATCTGAGTCTTGGGGGTTTATTTTCAGAAGGACCAGTCTCTTTGCTTTCAGGATTAAACCCTCGCCCCCTGAGTTTGGTTCTTCATTTCTTCGCTGTCGCGATATATGGTGTTGGTCGTTTGTTGCTACCATTTCCTTCCCCTAAACGCATATGGATCGGAATACGATTAATCGCTAGTGCATCCGGAATCATCTTGCCCATTATTAAGGCAGAAGGAATCCGTCAAATGTTCTTCCCTGCAACTGTTCCAGCTTATTATAGAGCACCTCCAGCTGCATAA
Protein sequence

>Msa1466790

LESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRIWIGIRLIASASGIILPIIKAEGIRQMFFPATVPAYYRAPPAA*