Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1264860 | XP_024638184.1 | 100.000 | 77 | 0 | 0 | 1 | 77 | 1 | 77 | 9.93e-52 | 166 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1264860 | sp|Q9SUD3|CX6B3_ARATH | 86.667 | 75 | 10 | 0 | 3 | 77 | 4 | 78 | 1.13e-46 | 145 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1264860 | A0A396IJH6 | 100.000 | 77 | 0 | 0 | 1 | 77 | 1 | 77 | 4.74e-52 | 166 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0003560 | Msa1264860 | -0.852618 | 4.100886e-61 | -8.615850e-47 |
Msa0011160 | Msa1264860 | -0.809240 | 2.086420e-50 | -8.615850e-47 |
Msa0029000 | Msa1264860 | 0.803720 | 3.046842e-49 | -8.615850e-47 |
Msa0029850 | Msa1264860 | -0.817920 | 2.566913e-52 | -8.615850e-47 |
Msa0050930 | Msa1264860 | -0.810400 | 1.174578e-50 | -8.615850e-47 |
Msa0051200 | Msa1264860 | -0.810593 | 1.067245e-50 | -8.615850e-47 |
Msa0051460 | Msa1264860 | -0.829269 | 5.656806e-55 | -8.615850e-47 |
Msa0058270 | Msa1264860 | -0.847903 | 8.613252e-60 | -8.615850e-47 |
Msa0063000 | Msa1264860 | -0.801706 | 7.932453e-49 | -8.615850e-47 |
Msa0607540 | Msa1264860 | -0.807768 | 4.301211e-50 | -8.615850e-47 |
Msa0613460 | Msa1264860 | -0.847274 | 1.283096e-59 | -8.615850e-47 |
Msa0622600 | Msa1264860 | -0.853344 | 2.543040e-61 | -8.615850e-47 |
Msa0647830 | Msa1264860 | -0.804861 | 1.762992e-49 | -8.615850e-47 |
Msa0654010 | Msa1264860 | -0.834378 | 3.103600e-56 | -8.615850e-47 |
Msa0658570 | Msa1264860 | -0.828463 | 8.864899e-55 | -8.615850e-47 |
Msa0660870 | Msa1264860 | -0.816937 | 4.274937e-52 | -8.615850e-47 |
Msa0690440 | Msa1264860 | -0.818339 | 2.064402e-52 | -8.615850e-47 |
Msa0696410 | Msa1264860 | -0.827513 | 1.501128e-54 | -8.615850e-47 |
Msa0716750 | Msa1264860 | -0.832857 | 7.440106e-56 | -8.615850e-47 |
Msa0724560 | Msa1264860 | -0.820821 | 5.601749e-53 | -8.615850e-47 |
Msa0768680 | Msa1264860 | 0.834857 | 2.350953e-56 | -8.615850e-47 |
Msa0768710 | Msa1264860 | 0.837473 | 5.090479e-57 | -8.615850e-47 |
Msa0772730 | Msa1264860 | -0.816540 | 5.246069e-52 | -8.615850e-47 |
Msa0799280 | Msa1264860 | -0.816386 | 5.679330e-52 | -8.615850e-47 |
Msa0810760 | Msa1264860 | -0.806698 | 7.248935e-50 | -8.615850e-47 |
Msa0818110 | Msa1264860 | -0.855588 | 5.703939e-62 | -8.615850e-47 |
Msa0828540 | Msa1264860 | -0.801612 | 8.295617e-49 | -8.615850e-47 |
Msa0833670 | Msa1264860 | 0.801016 | 1.098530e-48 | -8.615850e-47 |
Msa0833690 | Msa1264860 | 0.804471 | 2.126656e-49 | -8.615850e-47 |
Msa0143920 | Msa1264860 | -0.815847 | 7.494154e-52 | -8.615850e-47 |
Msa0169820 | Msa1264860 | -0.830749 | 2.464337e-55 | -8.615850e-47 |
Msa0175050 | Msa1264860 | -0.801432 | 9.030531e-49 | -8.615850e-47 |
Msa0183010 | Msa1264860 | 0.833549 | 5.003765e-56 | -8.615850e-47 |
Msa0199800 | Msa1264860 | 0.821113 | 4.798048e-53 | -8.615850e-47 |
Msa0207310 | Msa1264860 | 0.804772 | 1.840299e-49 | -8.615850e-47 |
Msa0223410 | Msa1264860 | 0.806971 | 6.348844e-50 | -8.615850e-47 |
Msa0230640 | Msa1264860 | 0.819707 | 1.008058e-52 | -8.615850e-47 |
Msa0234440 | Msa1264860 | -0.819502 | 1.122903e-52 | -8.615850e-47 |
Msa1224580 | Msa1264860 | 0.800015 | 1.757407e-48 | -8.615850e-47 |
Msa1225730 | Msa1264860 | 0.870251 | 1.680774e-66 | -8.615850e-47 |
Msa1235400 | Msa1264860 | -0.804642 | 1.958709e-49 | -8.615850e-47 |
Msa1250310 | Msa1264860 | -0.816471 | 5.437629e-52 | -8.615850e-47 |
Msa1256410 | Msa1264860 | -0.807844 | 4.143614e-50 | -8.615850e-47 |
Msa1257800 | Msa1264860 | 0.830599 | 2.681679e-55 | -8.615850e-47 |
Msa1258380 | Msa1264860 | 0.829991 | 3.775932e-55 | -8.615850e-47 |
Msa1262990 | Msa1264860 | 0.821575 | 3.754072e-53 | -8.615850e-47 |
Msa1264860 | Msa1297310 | -0.810889 | 9.209764e-51 | -8.615850e-47 |
Msa1264860 | Msa1301650 | -0.802478 | 5.504333e-49 | -8.615850e-47 |
Msa1264860 | Msa1307740 | -0.809215 | 2.112389e-50 | -8.615850e-47 |
Msa1264860 | Msa1309880 | -0.817512 | 3.173386e-52 | -8.615850e-47 |
Msa1264860 | Msa1311340 | -0.801595 | 8.360000e-49 | -8.615850e-47 |
Msa1264860 | Msa1314770 | -0.803136 | 4.026719e-49 | -8.615850e-47 |
Msa1264860 | Msa1373350 | -0.823265 | 1.519844e-53 | -8.615850e-47 |
Msa1264860 | Msa1376890 | -0.832191 | 1.088082e-55 | -8.615850e-47 |
Msa1264860 | Msa1376930 | -0.803455 | 3.457078e-49 | -8.615850e-47 |
Msa1264860 | Msa1377070 | -0.814478 | 1.509390e-51 | -8.615850e-47 |
Msa1264860 | Msa1385020 | -0.810692 | 1.015679e-50 | -8.615850e-47 |
Msa1264860 | Msa1390120 | -0.801369 | 9.300005e-49 | -8.615850e-47 |
Msa1264860 | Msa1397260 | -0.830109 | 3.532839e-55 | -8.615850e-47 |
Msa1264860 | Msa1401140 | -0.830548 | 2.760342e-55 | -8.615850e-47 |
Msa1264860 | Msa1404240 | 0.821760 | 3.401050e-53 | -8.615850e-47 |
Msa1264860 | Msa1407650 | -0.834253 | 3.335452e-56 | -8.615850e-47 |
Msa1264860 | Msa1435400 | -0.804609 | 1.989770e-49 | -8.615850e-47 |
Msa1264860 | Msa1444250 | 0.835315 | 1.802822e-56 | -8.615850e-47 |
Msa1264860 | Msa1451620 | 0.836682 | 8.107929e-57 | -8.615850e-47 |
Msa1264860 | Msa1463650 | 0.980842 | 3.661762e-151 | -8.615850e-47 |
Msa0365490 | Msa1264860 | -0.812886 | 3.383179e-51 | -8.615850e-47 |
Msa0377610 | Msa1264860 | 0.805634 | 1.214123e-49 | -8.615850e-47 |
Msa0381600 | Msa1264860 | 0.825919 | 3.604545e-54 | -8.615850e-47 |
Msa0388030 | Msa1264860 | 0.823634 | 1.246010e-53 | -8.615850e-47 |
Msa0389360 | Msa1264860 | -0.826179 | 3.127242e-54 | -8.615850e-47 |
Msa0389810 | Msa1264860 | -0.814400 | 1.570588e-51 | -8.615850e-47 |
Msa0392040 | Msa1264860 | 0.855312 | 6.863400e-62 | -8.615850e-47 |
Msa0433410 | Msa1264860 | 0.800704 | 1.272311e-48 | -8.615850e-47 |
Msa0438050 | Msa1264860 | -0.835975 | 1.227162e-56 | -8.615850e-47 |
Msa0457010 | Msa1264860 | -0.844986 | 5.380918e-59 | -8.615850e-47 |
Msa0458440 | Msa1264860 | -0.802266 | 6.088197e-49 | -8.615850e-47 |
Msa0468130 | Msa1264860 | -0.801064 | 1.073782e-48 | -8.615850e-47 |
Msa0469940 | Msa1264860 | 0.856091 | 4.067284e-62 | -8.615850e-47 |
Msa0482190 | Msa1264860 | 0.830390 | 3.016831e-55 | -8.615850e-47 |
Msa0982270 | Msa1264860 | -0.807668 | 4.516967e-50 | -8.615850e-47 |
Msa0990960 | Msa1264860 | -0.808248 | 3.399814e-50 | -8.615850e-47 |
Msa1006850 | Msa1264860 | -0.808295 | 3.321813e-50 | -8.615850e-47 |
Msa1021340 | Msa1264860 | -0.827103 | 1.881572e-54 | -8.615850e-47 |
Msa1021510 | Msa1264860 | -0.805773 | 1.135462e-49 | -8.615850e-47 |
Msa1054410 | Msa1264860 | -0.836124 | 1.124246e-56 | -8.615850e-47 |
Msa1068200 | Msa1264860 | 0.811927 | 5.481402e-51 | -8.615850e-47 |
Msa1075080 | Msa1264860 | 0.810478 | 1.129855e-50 | -8.615850e-47 |
Msa0342070 | Msa1264860 | -0.820579 | 6.366397e-53 | -8.615850e-47 |
Msa0344690 | Msa1264860 | 0.843465 | 1.378445e-58 | -8.615850e-47 |
Msa0354800 | Msa1264860 | 0.806449 | 8.181315e-50 | -8.615850e-47 |
Msa1132630 | Msa1264860 | 0.850948 | 1.220139e-60 | -8.615850e-47 |
Msa1144720 | Msa1264860 | 0.866511 | 2.702172e-65 | -8.615850e-47 |
Msa1156340 | Msa1264860 | 0.811075 | 8.392173e-51 | -8.615850e-47 |
Msa1162550 | Msa1264860 | 0.804387 | 2.213210e-49 | -8.615850e-47 |
Msa1171730 | Msa1264860 | -0.852666 | 3.973506e-61 | -8.615850e-47 |
Msa1204440 | Msa1264860 | -0.822068 | 2.886656e-53 | -8.615850e-47 |
Msa1205390 | Msa1264860 | -0.811330 | 7.390893e-51 | -8.615850e-47 |
Msa1222110 | Msa1264860 | 0.829174 | 5.967510e-55 | -8.615850e-47 |
Msa1222280 | Msa1264860 | -0.852068 | 5.882748e-61 | -8.615850e-47 |
Msa0485500 | Msa1264860 | 0.824731 | 6.884179e-54 | -8.615850e-47 |
Msa0491500 | Msa1264860 | -0.800528 | 1.381861e-48 | -8.615850e-47 |
Msa0492880 | Msa1264860 | -0.804203 | 2.417961e-49 | -8.615850e-47 |
Msa0514130 | Msa1264860 | 0.801539 | 8.586700e-49 | -8.615850e-47 |
Msa0521620 | Msa1264860 | -0.804466 | 2.131805e-49 | -8.615850e-47 |
Msa0526100 | Msa1264860 | 0.807350 | 5.277332e-50 | -8.615850e-47 |
Msa0527980 | Msa1264860 | 0.802657 | 5.056224e-49 | -8.615850e-47 |
Msa0532810 | Msa1264860 | 0.857540 | 1.522304e-62 | -8.615850e-47 |
Msa0553460 | Msa1264860 | -0.809808 | 1.575912e-50 | -8.615850e-47 |
Msa0558690 | Msa1264860 | -0.807466 | 4.985608e-50 | -8.615850e-47 |
Msa0567020 | Msa1264860 | -0.829106 | 6.198464e-55 | -8.615850e-47 |
Msa0598830 | Msa1264860 | 0.806154 | 9.438902e-50 | -8.615850e-47 |
Msa0848900 | Msa1264860 | -0.816332 | 5.840013e-52 | -8.615850e-47 |
Msa0874630 | Msa1264860 | -0.819684 | 1.020685e-52 | -8.615850e-47 |
Msa0881160 | Msa1264860 | -0.852749 | 3.762621e-61 | -8.615850e-47 |
Msa0881210 | Msa1264860 | 0.841446 | 4.729596e-58 | -8.615850e-47 |
Msa0886330 | Msa1264860 | 0.818396 | 2.003161e-52 | -8.615850e-47 |
Msa0901620 | Msa1264860 | 0.810614 | 1.055934e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1264860 | MtrunA17_Chr4g0073271 | 100.000 | 77 | 0 | 0 | 1 | 77 | 1 | 77 | 9.13e-56 | 166 |
Msa1264860 | MtrunA17_Chr5g0426571 | 81.333 | 75 | 14 | 0 | 3 | 77 | 109 | 183 | 1.87e-47 | 148 |
Msa1264860 | MtrunA17_Chr5g0400121 | 43.478 | 69 | 38 | 1 | 7 | 74 | 62 | 130 | 9.29e-20 | 76.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1264860 | AT4G28060.1 | 86.667 | 75 | 10 | 0 | 3 | 77 | 4 | 78 | 1.15e-47 | 145 |
Msa1264860 | AT5G57815.1 | 86.667 | 75 | 10 | 0 | 3 | 77 | 4 | 78 | 1.65e-47 | 145 |
Msa1264860 | AT1G22450.1 | 77.333 | 75 | 17 | 0 | 3 | 77 | 116 | 190 | 1.55e-45 | 144 |
Msa1264860 | AT1G32710.1 | 45.455 | 55 | 30 | 0 | 9 | 63 | 59 | 113 | 3.39e-15 | 65.5 |
Find 35 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACAGGTGCATGACAGTAAA+AGG | 0.296713 | 8_2:+68437593 | Msa1264860:intron |
GTTCTCTTTGCCCCGGTGAA+TGG | 0.301610 | 8_2:+68437657 | Msa1264860:CDS |
GCAAAGAGAACGGTAGTATT+TGG | 0.308371 | 8_2:-68437645 | None:intergenic |
TTCTCTTTGCCCCGGTGAAT+GGG | 0.347711 | 8_2:+68437658 | Msa1264860:CDS |
ACAGAGAAAACGAAAGGAAA+TGG | 0.392788 | 8_2:-68435907 | None:intergenic |
TGCCGGGTTTGATTAGTTGT+AGG | 0.456773 | 8_2:-68437465 | None:intergenic |
AAAATGGTTTCAAGAATTTG+TGG | 0.470941 | 8_2:-68439018 | None:intergenic |
GAAATTCTTGAACATTCTGT+TGG | 0.479714 | 8_2:+68438915 | Msa1264860:three_prime_UTR |
AGTCATGGTGTGGATCAATA+AGG | 0.481010 | 8_2:+68438973 | Msa1264860:three_prime_UTR |
CTCGCTACATAGAGTTTCAC+AGG | 0.490501 | 8_2:+68437496 | Msa1264860:CDS |
CCCTTGTGACTTCTGAGACA+TGG | 0.492635 | 8_2:+68438893 | Msa1264860:three_prime_UTR |
GTAGGAAAACGAAAATCAAC+AGG | 0.493074 | 8_2:-68437447 | None:intergenic |
ACATGCTTTCAAAGAGGTCC+TGG | 0.510554 | 8_2:-68438860 | None:intergenic |
AGGGATGCTTACCCATTCAC+CGG | 0.515653 | 8_2:-68437669 | None:intergenic |
GAAAGAACAGAGAAAACGAA+AGG | 0.527911 | 8_2:-68435913 | None:intergenic |
TGATTATCTTTACCGAGTCA+TGG | 0.528804 | 8_2:+68438958 | Msa1264860:three_prime_UTR |
TACTACCGTTCTCTTTGCCC+CGG | 0.531700 | 8_2:+68437650 | Msa1264860:CDS |
ATCTTTACCGAGTCATGGTG+TGG | 0.548557 | 8_2:+68438963 | Msa1264860:three_prime_UTR |
GTCTGTCTCACTCATGGCGG+AGG | 0.557442 | 8_2:+68435958 | Msa1264860:exon |
GATCGAGTCTGTCTCACTCA+TGG | 0.575198 | 8_2:+68435952 | Msa1264860:exon |
TGTAGCGAGTGAAACAGTGC+CGG | 0.576683 | 8_2:-68437482 | None:intergenic |
AATTATTGCAGGTTGACAAG+TGG | 0.580545 | 8_2:+68438810 | Msa1264860:intron |
GTAGCGAGTGAAACAGTGCC+GGG | 0.582425 | 8_2:-68437481 | None:intergenic |
GGGATGCTTACCCATTCACC+GGG | 0.582773 | 8_2:-68437668 | None:intergenic |
ATTCACCGGGGCAAAGAGAA+CGG | 0.617282 | 8_2:-68437655 | None:intergenic |
AAACACACATGCTTTCAAAG+AGG | 0.618056 | 8_2:-68438866 | None:intergenic |
TGGAATGAACAGAGGGACAA+TGG | 0.619086 | 8_2:+68438830 | Msa1264860:CDS |
TATTGATCCACACCATGACT+CGG | 0.619574 | 8_2:-68438970 | None:intergenic |
TCCATGTCTCAGAAGTCACA+AGG | 0.620749 | 8_2:-68438894 | None:intergenic |
TTCCTACAACTAATCAAACC+CGG | 0.624103 | 8_2:+68437463 | Msa1264860:CDS |
TGACAAGTGGAATGAACAGA+GGG | 0.629992 | 8_2:+68438823 | Msa1264860:CDS |
ACAGTAAAAGGTGAAAACTC+AGG | 0.633665 | 8_2:+68437605 | Msa1264860:CDS |
TTGACAAGTGGAATGAACAG+AGG | 0.706038 | 8_2:+68438822 | Msa1264860:CDS |
CCATGTCTCAGAAGTCACAA+GGG | 0.710508 | 8_2:-68438893 | None:intergenic |
GGATGCTTACCCATTCACCG+GGG | 0.811773 | 8_2:-68437667 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGAAATTAAAAATGAATATT+GGG | - | chr8_2:68436002-68436021 | None:intergenic | 10.0% |
!! | TTGAAATTAAAAATGAATAT+TGG | - | chr8_2:68436003-68436022 | None:intergenic | 10.0% |
!!! | TTTTAGCTTATATTAATTAA+GGG | - | chr8_2:68436608-68436627 | None:intergenic | 10.0% |
!!! | TTTTTAGCTTATATTAATTA+AGG | - | chr8_2:68436609-68436628 | None:intergenic | 10.0% |
!! | ATTAAAATTAAAACACAAAT+GGG | - | chr8_2:68437339-68437358 | None:intergenic | 10.0% |
!! | ATAATTTGAATAAGATAAAT+TGG | + | chr8_2:68438377-68438396 | Msa1264860:intron | 10.0% |
!! | AAAAATACATATACTGTATT+TGG | + | chr8_2:68436519-68436538 | Msa1264860:intron | 15.0% |
!!! | TTTAGCTTATATTAATTAAG+GGG | - | chr8_2:68436607-68436626 | None:intergenic | 15.0% |
!! | AAGCTAAAAATACATATATT+TGG | + | chr8_2:68436619-68436638 | Msa1264860:intron | 15.0% |
!! | TAGATTTAAGAATTTACAAT+CGG | - | chr8_2:68436700-68436719 | None:intergenic | 15.0% |
!! | TTGTAAATTCTTAAATCTAT+TGG | + | chr8_2:68436701-68436720 | Msa1264860:intron | 15.0% |
!! | CATTAAAATTAAAACACAAA+TGG | - | chr8_2:68437340-68437359 | None:intergenic | 15.0% |
!! | AGTAAATATATTGAATCTTA+TGG | - | chr8_2:68438108-68438127 | None:intergenic | 15.0% |
!!! | TTCATTATAATATTTTGCAA+CGG | - | chr8_2:68438742-68438761 | None:intergenic | 15.0% |
!!! | TATTAGCTTAAAATGAAAAA+TGG | - | chr8_2:68439037-68439056 | None:intergenic | 15.0% |
!! | AAATATTCAAAGGAAACAAA+AGG | - | chr8_2:68436132-68436151 | None:intergenic | 20.0% |
!! | TTACTCTTAAACTAATCTTT+AGG | + | chr8_2:68436447-68436466 | Msa1264860:intron | 20.0% |
!! | TTGACAATTTCAAAACTATA+AGG | + | chr8_2:68436732-68436751 | Msa1264860:intron | 20.0% |
!! | CTACCATTAAATTAAATTGT+TGG | - | chr8_2:68436811-68436830 | None:intergenic | 20.0% |
!! | TATAAAGAAAATAACCATTG+TGG | - | chr8_2:68436981-68437000 | None:intergenic | 20.0% |
!!! | TTTTGTGATAACAAAGATAT+AGG | - | chr8_2:68437037-68437056 | None:intergenic | 20.0% |
!! | ACAAGATATAAAGATATATG+TGG | - | chr8_2:68437363-68437382 | None:intergenic | 20.0% |
!! | TTTACATTAAGGTAAATTTG+CGG | - | chr8_2:68437751-68437770 | None:intergenic | 20.0% |
!! | TAACATCAATCTTTACATTA+AGG | - | chr8_2:68437762-68437781 | None:intergenic | 20.0% |
!!! | AGTTTTAAACATTTAAGAAC+TGG | + | chr8_2:68437844-68437863 | Msa1264860:intron | 20.0% |
!! | CAATTAGTAATACTACATAT+GGG | - | chr8_2:68437941-68437960 | None:intergenic | 20.0% |
!! | TCAATTAGTAATACTACATA+TGG | - | chr8_2:68437942-68437961 | None:intergenic | 20.0% |
!! | AAATATATTGAATCTTATGG+AGG | - | chr8_2:68438105-68438124 | None:intergenic | 20.0% |
!!! | AAATTTTAAATAGCGAAACA+CGG | - | chr8_2:68438778-68438797 | None:intergenic | 20.0% |
! | AATTACTGAAAAGCGAAAAA+AGG | - | chr8_2:68436034-68436053 | None:intergenic | 25.0% |
!! | TTTTAAATTAATGTCGTTGC+TGG | + | chr8_2:68436187-68436206 | Msa1264860:intron | 25.0% |
! | TAAGCAATGTTATTAGATAC+AGG | - | chr8_2:68436307-68436326 | None:intergenic | 25.0% |
! | TTGCTTATTGTCAAATTAGA+AGG | + | chr8_2:68436320-68436339 | Msa1264860:intron | 25.0% |
!!! | CATCTTTGAAATATGCAAAT+AGG | - | chr8_2:68436385-68436404 | None:intergenic | 25.0% |
!! | TGAAAATCCAAAAAGTACAA+GGG | - | chr8_2:68436474-68436493 | None:intergenic | 25.0% |
!! | TTGAAAATCCAAAAAGTACA+AGG | - | chr8_2:68436475-68436494 | None:intergenic | 25.0% |
! | AGAAATGATATCGTTGAATA+GGG | - | chr8_2:68436578-68436597 | None:intergenic | 25.0% |
! | ATTAAATTAAATTGTTGGCG+AGG | - | chr8_2:68436806-68436825 | None:intergenic | 25.0% |
!! | TCGCCAACAATTTAATTTAA+TGG | + | chr8_2:68436805-68436824 | Msa1264860:intron | 25.0% |
!! | AATGGTAGTTTTTGTTAGTA+TGG | + | chr8_2:68436823-68436842 | Msa1264860:intron | 25.0% |
! | AGCACACTATAAAATGATTA+TGG | - | chr8_2:68436891-68436910 | None:intergenic | 25.0% |
!! | ATAATCATTTTATAGTGTGC+TGG | + | chr8_2:68436890-68436909 | Msa1264860:intron | 25.0% |
! | AAAAAATAAATTAATCCCCG+AGG | - | chr8_2:68436947-68436966 | None:intergenic | 25.0% |
! | TATGTAAATTGTGTCATAGA+GGG | - | chr8_2:68437164-68437183 | None:intergenic | 25.0% |
! | ATATGTAAATTGTGTCATAG+AGG | - | chr8_2:68437165-68437184 | None:intergenic | 25.0% |
! | ATTCATTGCTTAAAACTACA+TGG | + | chr8_2:68437263-68437282 | Msa1264860:intron | 25.0% |
! | TTAATCGTGACTTTAATTAC+AGG | + | chr8_2:68437576-68437595 | Msa1264860:intron | 25.0% |
! | TGCTAATGAAACAAAGTTAA+GGG | - | chr8_2:68437691-68437710 | None:intergenic | 25.0% |
! | TTGCTAATGAAACAAAGTTA+AGG | - | chr8_2:68437692-68437711 | None:intergenic | 25.0% |
!! | CTTAAATGTTTAAAACTAGC+TGG | - | chr8_2:68437841-68437860 | None:intergenic | 25.0% |
! | AAAAAGTTGAGAATTGAACT+GGG | - | chr8_2:68437904-68437923 | None:intergenic | 25.0% |
! | TAAAAAGTTGAGAATTGAAC+TGG | - | chr8_2:68437905-68437924 | None:intergenic | 25.0% |
!! | TTCTCAACTTTTTATGCATT+TGG | + | chr8_2:68437911-68437930 | Msa1264860:intron | 25.0% |
! | TATTCTAGTACATCGTTTAA+TGG | + | chr8_2:68437991-68438010 | Msa1264860:intron | 25.0% |
!! | TGTTTGCTGATATATTATTC+TGG | + | chr8_2:68438032-68438051 | Msa1264860:intron | 25.0% |
!!! | CTGATATATTATTCTGGTTT+TGG | + | chr8_2:68438038-68438057 | Msa1264860:intron | 25.0% |
!!! | TCTTTAGGATTTTACATGTT+AGG | + | chr8_2:68438175-68438194 | Msa1264860:intron | 25.0% |
!! | CAATTTTCTTTGTTGACAAA+TGG | + | chr8_2:68438198-68438217 | Msa1264860:intron | 25.0% |
!!! | AGTATTGACTAGAATAATGA+TGG | + | chr8_2:68438241-68438260 | Msa1264860:intron | 25.0% |
! | TTCATTGAAGATAAATGTCT+AGG | - | chr8_2:68438285-68438304 | None:intergenic | 25.0% |
! | ATCATAGTTACAATTTACCA+AGG | - | chr8_2:68438456-68438475 | None:intergenic | 25.0% |
! | AAAAATACAGACATCGAAAT+TGG | - | chr8_2:68438493-68438512 | None:intergenic | 25.0% |
!!! | CTGTATTTTTTGTTAGGATT+AGG | + | chr8_2:68438503-68438522 | Msa1264860:intron | 25.0% |
! | TGTCTAGAGATTAATTAGAA+GGG | - | chr8_2:68438585-68438604 | None:intergenic | 25.0% |
! | ATGTCTAGAGATTAATTAGA+AGG | - | chr8_2:68438586-68438605 | None:intergenic | 25.0% |
! | TTCATGACAAATTTGAATTC+TGG | + | chr8_2:68438700-68438719 | Msa1264860:intron | 25.0% |
! | AAAATGGTTTCAAGAATTTG+TGG | - | chr8_2:68439021-68439040 | None:intergenic | 25.0% |
GAATATGCAAAAGCGAAAAT+GGG | - | chr8_2:68436068-68436087 | None:intergenic | 30.0% | |
TGAATATGCAAAAGCGAAAA+TGG | - | chr8_2:68436069-68436088 | None:intergenic | 30.0% | |
CAGGAAGGAAAAATATTCAA+AGG | - | chr8_2:68436142-68436161 | None:intergenic | 30.0% | |
CTCCACATAATTCAAAATCA+GGG | - | chr8_2:68436264-68436283 | None:intergenic | 30.0% | |
ATTAGATACAGGTTAGTAGA+AGG | - | chr8_2:68436296-68436315 | None:intergenic | 30.0% | |
TTTAATGACGTCAAGCAAAT+TGG | - | chr8_2:68436347-68436366 | None:intergenic | 30.0% | |
TGCTTGACGTCATTAAAAAT+AGG | + | chr8_2:68436350-68436369 | Msa1264860:intron | 30.0% | |
TGTCTAACCTTTACAATTTC+AGG | + | chr8_2:68436409-68436428 | Msa1264860:intron | 30.0% | |
GTCTAACCTTTACAATTTCA+GGG | + | chr8_2:68436410-68436429 | Msa1264860:intron | 30.0% | |
TCTAACCTTTACAATTTCAG+GGG | + | chr8_2:68436411-68436430 | Msa1264860:intron | 30.0% | |
!!! | TTTTAGCTTATATTCGAGAC+TGG | - | chr8_2:68436503-68436522 | None:intergenic | 30.0% |
CAGAAATGATATCGTTGAAT+AGG | - | chr8_2:68436579-68436598 | None:intergenic | 30.0% | |
CTCTACTTAATCAAACCAAA+AGG | + | chr8_2:68436852-68436871 | Msa1264860:intron | 30.0% | |
! | GGCTATTAATTTAGACCTTT+TGG | - | chr8_2:68436870-68436889 | None:intergenic | 30.0% |
!! | TTTGAATATTGACTCCACAA+TGG | + | chr8_2:68436964-68436983 | Msa1264860:intron | 30.0% |
AAACTAGAACCAACATTAGA+CGG | - | chr8_2:68437123-68437142 | None:intergenic | 30.0% | |
! | TTACGTTTTCTTCGTTCTTA+TGG | + | chr8_2:68437216-68437235 | Msa1264860:intron | 30.0% |
AAGCAACACAATATTAAGTC+AGG | - | chr8_2:68437400-68437419 | None:intergenic | 30.0% | |
TCTTAACTTACTCGATTACT+TGG | + | chr8_2:68437715-68437734 | Msa1264860:intron | 30.0% | |
GTGAAACTTAATGCGATTTA+TGG | + | chr8_2:68437782-68437801 | Msa1264860:intron | 30.0% | |
! | AAATGTTTAAAACTAGCTGG+TGG | - | chr8_2:68437838-68437857 | None:intergenic | 30.0% |
ATAAAGGGCTAACAGATAAA+TGG | - | chr8_2:68438076-68438095 | None:intergenic | 30.0% | |
TTATGGAGGTTTGACATAAA+GGG | - | chr8_2:68438091-68438110 | None:intergenic | 30.0% | |
CTTATTATCTCCATGACTAA+TGG | + | chr8_2:68438126-68438145 | Msa1264860:intron | 30.0% | |
TGAAGATAAATGTCTAGGAA+GGG | - | chr8_2:68438280-68438299 | None:intergenic | 30.0% | |
TTGAAGATAAATGTCTAGGA+AGG | - | chr8_2:68438281-68438300 | None:intergenic | 30.0% | |
AGATTAATTTCAAGCAACCA+TGG | - | chr8_2:68438326-68438345 | None:intergenic | 30.0% | |
TTAATCTTCATGCTTTGTAC+TGG | + | chr8_2:68438339-68438358 | Msa1264860:intron | 30.0% | |
!!! | CGATGTCTGTATTTTTTGTT+AGG | + | chr8_2:68438497-68438516 | Msa1264860:intron | 30.0% |
TCATGAAATTTGACCTAAGT+TGG | - | chr8_2:68438687-68438706 | None:intergenic | 30.0% | |
TGTTTGATGCAAATTATTGC+AGG | + | chr8_2:68438799-68438818 | Msa1264860:intron | 30.0% | |
GAAATTCTTGAACATTCTGT+TGG | + | chr8_2:68438915-68438934 | Msa1264860:three_prime_UTR | 30.0% | |
ACAGAGAAAACGAAAGGAAA+TGG | - | chr8_2:68435910-68435929 | None:intergenic | 35.0% | |
GAAAGAACAGAGAAAACGAA+AGG | - | chr8_2:68435916-68435935 | None:intergenic | 35.0% | |
! | TGAATATTGGGTTGTGATTC+AGG | - | chr8_2:68435990-68436009 | None:intergenic | 35.0% |
! | AGCCCTGATTTTGAATTATG+TGG | + | chr8_2:68436259-68436278 | Msa1264860:intron | 35.0% |
GCTCCACATAATTCAAAATC+AGG | - | chr8_2:68436265-68436284 | None:intergenic | 35.0% | |
CTAACCTTTACAATTTCAGG+GGG | + | chr8_2:68436412-68436431 | Msa1264860:intron | 35.0% | |
TAACCTTTACAATTTCAGGG+GGG | + | chr8_2:68436413-68436432 | Msa1264860:intron | 35.0% | |
! | TTTAGGTCCCTTGTACTTTT+TGG | + | chr8_2:68436464-68436483 | Msa1264860:intron | 35.0% |
! | AAGGACGCAAAAAAGTACAA+GGG | - | chr8_2:68436651-68436670 | None:intergenic | 35.0% |
! | TAAGGACGCAAAAAAGTACA+AGG | - | chr8_2:68436652-68436671 | None:intergenic | 35.0% |
CCATTAGAGGACTGATTATA+AGG | - | chr8_2:68436670-68436689 | None:intergenic | 35.0% | |
CCTTATAATCAGTCCTCTAA+TGG | + | chr8_2:68436667-68436686 | Msa1264860:intron | 35.0% | |
ATAATCAGTCCTCTAATGGT+AGG | + | chr8_2:68436671-68436690 | Msa1264860:intron | 35.0% | |
TAATCAGTCCTCTAATGGTA+GGG | + | chr8_2:68436672-68436691 | Msa1264860:intron | 35.0% | |
TATAAGGACCTTAGTTTCAG+TGG | + | chr8_2:68436748-68436767 | Msa1264860:intron | 35.0% | |
TGAACATCCCACAAAATGAA+AGG | + | chr8_2:68436780-68436799 | Msa1264860:intron | 35.0% | |
! | ATCATTTTATAGTGTGCTGG+TGG | + | chr8_2:68436893-68436912 | Msa1264860:intron | 35.0% |
TTAAGTTAGCCGTCTAATGT+TGG | + | chr8_2:68437111-68437130 | Msa1264860:intron | 35.0% | |
!!! | GTTTTTAGCTCAATCTGGAA+AGG | - | chr8_2:68437423-68437442 | None:intergenic | 35.0% |
GTAGGAAAACGAAAATCAAC+AGG | - | chr8_2:68437450-68437469 | None:intergenic | 35.0% | |
TTCCTACAACTAATCAAACC+CGG | + | chr8_2:68437463-68437482 | Msa1264860:CDS | 35.0% | |
ACAGTAAAAGGTGAAAACTC+AGG | + | chr8_2:68437605-68437624 | Msa1264860:CDS | 35.0% | |
ACTTACTCGATTACTTGGTT+CGG | + | chr8_2:68437720-68437739 | Msa1264860:intron | 35.0% | |
! | TTTAAAACTAGCTGGTGGAA+AGG | - | chr8_2:68437833-68437852 | None:intergenic | 35.0% |
CTTATGGAGGTTTGACATAA+AGG | - | chr8_2:68438092-68438111 | None:intergenic | 35.0% | |
TAGACGACATACATAAGACA+CGG | - | chr8_2:68438153-68438172 | None:intergenic | 35.0% | |
!! | TGTATGTCGTCTAGTTCTTT+AGG | + | chr8_2:68438160-68438179 | Msa1264860:intron | 35.0% |
TTTACCAAGGACTGATGTAT+GGG | - | chr8_2:68438443-68438462 | None:intergenic | 35.0% | |
ATTTACCAAGGACTGATGTA+TGG | - | chr8_2:68438444-68438463 | None:intergenic | 35.0% | |
! | ATTAGGCTAGTGAATTTGCT+TGG | + | chr8_2:68438520-68438539 | Msa1264860:intron | 35.0% |
CTAGAGATTAATTAGAAGGG+CGG | - | chr8_2:68438582-68438601 | None:intergenic | 35.0% | |
!! | AAGTTGGTCTTTGCAAAACT+GGG | - | chr8_2:68438671-68438690 | None:intergenic | 35.0% |
!! | TAAGTTGGTCTTTGCAAAAC+TGG | - | chr8_2:68438672-68438691 | None:intergenic | 35.0% |
! | AGTTTTGCAAAGACCAACTT+AGG | + | chr8_2:68438671-68438690 | Msa1264860:intron | 35.0% |
! | AATTATTGCAGGTTGACAAG+TGG | + | chr8_2:68438810-68438829 | Msa1264860:intron | 35.0% |
AAACACACATGCTTTCAAAG+AGG | - | chr8_2:68438869-68438888 | None:intergenic | 35.0% | |
TGATTATCTTTACCGAGTCA+TGG | + | chr8_2:68438958-68438977 | Msa1264860:three_prime_UTR | 35.0% | |
TGCAAAAGCGAAAATGGGAA+AGG | - | chr8_2:68436063-68436082 | None:intergenic | 40.0% | |
AATGAAATGCTGCAAACGTC+AGG | - | chr8_2:68436161-68436180 | None:intergenic | 40.0% | |
TTGAATTATGTGGAGCAGCT+TGG | + | chr8_2:68436269-68436288 | Msa1264860:intron | 40.0% | |
TTACCCCCCTGAAATTGTAA+AGG | - | chr8_2:68436419-68436438 | None:intergenic | 40.0% | |
TACAATTTCAGGGGGGTAAT+TGG | + | chr8_2:68436420-68436439 | Msa1264860:intron | 40.0% | |
!! | TTTTATAGTGTGCTGGTGGA+CGG | + | chr8_2:68436897-68436916 | Msa1264860:intron | 40.0% |
TCAATATGTCACAACTGCCT+CGG | + | chr8_2:68436927-68436946 | Msa1264860:intron | 40.0% | |
CGCTGTGATCAAATGTCAAA+AGG | - | chr8_2:68437089-68437108 | None:intergenic | 40.0% | |
TAAGTCAGGAAAAAGACTGC+AGG | - | chr8_2:68437386-68437405 | None:intergenic | 40.0% | |
!!! | GTGCTGTTTTTAGCTCAATC+TGG | - | chr8_2:68437428-68437447 | None:intergenic | 40.0% |
TACAGGTGCATGACAGTAAA+AGG | + | chr8_2:68437593-68437612 | Msa1264860:intron | 40.0% | |
GCAAAGAGAACGGTAGTATT+TGG | - | chr8_2:68437648-68437667 | None:intergenic | 40.0% | |
CTTACTCGATTACTTGGTTC+GGG | + | chr8_2:68437721-68437740 | Msa1264860:intron | 40.0% | |
!! | TTAACTTGTTCCAAGAGCCA+TGG | + | chr8_2:68438306-68438325 | Msa1264860:intron | 40.0% |
GTAATCACTAGTGTCATGCA+TGG | - | chr8_2:68438628-68438647 | None:intergenic | 40.0% | |
TTGACAAGTGGAATGAACAG+AGG | + | chr8_2:68438822-68438841 | Msa1264860:CDS | 40.0% | |
TGACAAGTGGAATGAACAGA+GGG | + | chr8_2:68438823-68438842 | Msa1264860:CDS | 40.0% | |
TATTGATCCACACCATGACT+CGG | - | chr8_2:68438973-68438992 | None:intergenic | 40.0% | |
AGTCATGGTGTGGATCAATA+AGG | + | chr8_2:68438973-68438992 | Msa1264860:three_prime_UTR | 40.0% | |
AAATGCTGCAAACGTCAGGA+AGG | - | chr8_2:68436157-68436176 | None:intergenic | 45.0% | |
AATCGGATCCCTACCATTAG+AGG | - | chr8_2:68436683-68436702 | None:intergenic | 45.0% | |
AAGGACCTTAGTTTCAGTGG+AGG | + | chr8_2:68436751-68436770 | Msa1264860:intron | 45.0% | |
ACAAGCCTCCACTGAAACTA+AGG | - | chr8_2:68436759-68436778 | None:intergenic | 45.0% | |
CAATATGTCACAACTGCCTC+GGG | + | chr8_2:68436928-68436947 | Msa1264860:intron | 45.0% | |
AATATGTCACAACTGCCTCG+GGG | + | chr8_2:68436929-68436948 | Msa1264860:intron | 45.0% | |
! | TGCCGGGTTTGATTAGTTGT+AGG | - | chr8_2:68437468-68437487 | None:intergenic | 45.0% |
CTCGCTACATAGAGTTTCAC+AGG | + | chr8_2:68437496-68437515 | Msa1264860:CDS | 45.0% | |
GCTACATAGAGTTTCACAGG+TGG | + | chr8_2:68437499-68437518 | Msa1264860:intron | 45.0% | |
! | CAGGTGGATTTCTTGACTCT+TGG | + | chr8_2:68437515-68437534 | Msa1264860:intron | 45.0% |
AAGACACGGTCCATTAGTCA+TGG | - | chr8_2:68438139-68438158 | None:intergenic | 45.0% | |
TTTCAAGCAACCATGGCTCT+TGG | - | chr8_2:68438319-68438338 | None:intergenic | 45.0% | |
TGGAATGAACAGAGGGACAA+TGG | + | chr8_2:68438830-68438849 | Msa1264860:CDS | 45.0% | |
! | AGGGACAATGGTACTTTTCC+AGG | + | chr8_2:68438842-68438861 | Msa1264860:CDS | 45.0% |
ACATGCTTTCAAAGAGGTCC+TGG | - | chr8_2:68438863-68438882 | None:intergenic | 45.0% | |
CCATGTCTCAGAAGTCACAA+GGG | - | chr8_2:68438896-68438915 | None:intergenic | 45.0% | |
TCCATGTCTCAGAAGTCACA+AGG | - | chr8_2:68438897-68438916 | None:intergenic | 45.0% | |
ATCTTTACCGAGTCATGGTG+TGG | + | chr8_2:68438963-68438982 | Msa1264860:three_prime_UTR | 45.0% | |
GATCGAGTCTGTCTCACTCA+TGG | + | chr8_2:68435952-68435971 | Msa1264860:exon | 50.0% | |
! | GGCGAGGCCTTTCATTTTGT+GGG | - | chr8_2:68436790-68436809 | None:intergenic | 50.0% |
! | TGGCGAGGCCTTTCATTTTG+TGG | - | chr8_2:68436791-68436810 | None:intergenic | 50.0% |
TGTAGCGAGTGAAACAGTGC+CGG | - | chr8_2:68437485-68437504 | None:intergenic | 50.0% | |
TACTACCGTTCTCTTTGCCC+CGG | + | chr8_2:68437650-68437669 | Msa1264860:CDS | 50.0% | |
ATTCACCGGGGCAAAGAGAA+CGG | - | chr8_2:68437658-68437677 | None:intergenic | 50.0% | |
TTCTCTTTGCCCCGGTGAAT+GGG | + | chr8_2:68437658-68437677 | Msa1264860:CDS | 50.0% | |
AGGGATGCTTACCCATTCAC+CGG | - | chr8_2:68437672-68437691 | None:intergenic | 50.0% | |
TGTGCCCATACATCAGTCCT+TGG | + | chr8_2:68438436-68438455 | Msa1264860:intron | 50.0% | |
TGTCATGCATGGAGTCTGCT+GGG | - | chr8_2:68438617-68438636 | None:intergenic | 50.0% | |
!! | CCCTTGTGACTTCTGAGACA+TGG | + | chr8_2:68438893-68438912 | Msa1264860:three_prime_UTR | 50.0% |
CGAGTCTGTCTCACTCATGG+CGG | + | chr8_2:68435955-68435974 | Msa1264860:exon | 55.0% | |
! | TATAGTGTGCTGGTGGACGG+TGG | + | chr8_2:68436900-68436919 | Msa1264860:intron | 55.0% |
GTAGCGAGTGAAACAGTGCC+GGG | - | chr8_2:68437484-68437503 | None:intergenic | 55.0% | |
GTTCTCTTTGCCCCGGTGAA+TGG | + | chr8_2:68437657-68437676 | Msa1264860:CDS | 55.0% | |
GGATGCTTACCCATTCACCG+GGG | - | chr8_2:68437670-68437689 | None:intergenic | 55.0% | |
GGGATGCTTACCCATTCACC+GGG | - | chr8_2:68437671-68437690 | None:intergenic | 55.0% | |
GTGTCATGCATGGAGTCTGC+TGG | - | chr8_2:68438618-68438637 | None:intergenic | 55.0% | |
GTCTGTCTCACTCATGGCGG+AGG | + | chr8_2:68435958-68435977 | Msa1264860:exon | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_2 | gene | 68435896 | 68439095 | 68435896 | ID=Msa1264860;Name=Msa1264860 |
chr8_2 | mRNA | 68435896 | 68439095 | 68435896 | ID=Msa1264860-mRNA-1;Parent=Msa1264860;Name=Msa1264860-mRNA-1;_AED=0.03;_eAED=0.03;_QI=75|1|1|1|1|1|4|221|77 |
chr8_2 | exon | 68435896 | 68435979 | 68435896 | ID=Msa1264860-mRNA-1:exon:22669;Parent=Msa1264860-mRNA-1 |
chr8_2 | exon | 68437429 | 68437517 | 68437429 | ID=Msa1264860-mRNA-1:exon:22670;Parent=Msa1264860-mRNA-1 |
chr8_2 | exon | 68437598 | 68437679 | 68437598 | ID=Msa1264860-mRNA-1:exon:22671;Parent=Msa1264860-mRNA-1 |
chr8_2 | exon | 68438821 | 68439095 | 68438821 | ID=Msa1264860-mRNA-1:exon:22672;Parent=Msa1264860-mRNA-1 |
chr8_2 | five_prime_UTR | 68435896 | 68435970 | 68435896 | ID=Msa1264860-mRNA-1:five_prime_utr;Parent=Msa1264860-mRNA-1 |
chr8_2 | CDS | 68435971 | 68435979 | 68435971 | ID=Msa1264860-mRNA-1:cds;Parent=Msa1264860-mRNA-1 |
chr8_2 | CDS | 68437429 | 68437517 | 68437429 | ID=Msa1264860-mRNA-1:cds;Parent=Msa1264860-mRNA-1 |
chr8_2 | CDS | 68437598 | 68437679 | 68437598 | ID=Msa1264860-mRNA-1:cds;Parent=Msa1264860-mRNA-1 |
chr8_2 | CDS | 68438821 | 68438874 | 68438821 | ID=Msa1264860-mRNA-1:cds;Parent=Msa1264860-mRNA-1 |
chr8_2 | three_prime_UTR | 68438875 | 68439095 | 68438875 | ID=Msa1264860-mRNA-1:three_prime_utr;Parent=Msa1264860-mRNA-1 |
Gene Sequence |
Protein sequence |