AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1264860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1264860 MtrunA17_Chr4g0073271 100.000 77 0 0 1 77 1 77 9.13e-56 166
Msa1264860 MtrunA17_Chr5g0426571 81.333 75 14 0 3 77 109 183 1.87e-47 148
Msa1264860 MtrunA17_Chr5g0400121 43.478 69 38 1 7 74 62 130 9.29e-20 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1264860 AT4G28060.1 86.667 75 10 0 3 77 4 78 1.15e-47 145
Msa1264860 AT5G57815.1 86.667 75 10 0 3 77 4 78 1.65e-47 145
Msa1264860 AT1G22450.1 77.333 75 17 0 3 77 116 190 1.55e-45 144
Msa1264860 AT1G32710.1 45.455 55 30 0 9 63 59 113 3.39e-15 65.5

Find 35 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAGGTGCATGACAGTAAA+AGG 0.296713 8_2:+68437593 Msa1264860:intron
GTTCTCTTTGCCCCGGTGAA+TGG 0.301610 8_2:+68437657 Msa1264860:CDS
GCAAAGAGAACGGTAGTATT+TGG 0.308371 8_2:-68437645 None:intergenic
TTCTCTTTGCCCCGGTGAAT+GGG 0.347711 8_2:+68437658 Msa1264860:CDS
ACAGAGAAAACGAAAGGAAA+TGG 0.392788 8_2:-68435907 None:intergenic
TGCCGGGTTTGATTAGTTGT+AGG 0.456773 8_2:-68437465 None:intergenic
AAAATGGTTTCAAGAATTTG+TGG 0.470941 8_2:-68439018 None:intergenic
GAAATTCTTGAACATTCTGT+TGG 0.479714 8_2:+68438915 Msa1264860:three_prime_UTR
AGTCATGGTGTGGATCAATA+AGG 0.481010 8_2:+68438973 Msa1264860:three_prime_UTR
CTCGCTACATAGAGTTTCAC+AGG 0.490501 8_2:+68437496 Msa1264860:CDS
CCCTTGTGACTTCTGAGACA+TGG 0.492635 8_2:+68438893 Msa1264860:three_prime_UTR
GTAGGAAAACGAAAATCAAC+AGG 0.493074 8_2:-68437447 None:intergenic
ACATGCTTTCAAAGAGGTCC+TGG 0.510554 8_2:-68438860 None:intergenic
AGGGATGCTTACCCATTCAC+CGG 0.515653 8_2:-68437669 None:intergenic
GAAAGAACAGAGAAAACGAA+AGG 0.527911 8_2:-68435913 None:intergenic
TGATTATCTTTACCGAGTCA+TGG 0.528804 8_2:+68438958 Msa1264860:three_prime_UTR
TACTACCGTTCTCTTTGCCC+CGG 0.531700 8_2:+68437650 Msa1264860:CDS
ATCTTTACCGAGTCATGGTG+TGG 0.548557 8_2:+68438963 Msa1264860:three_prime_UTR
GTCTGTCTCACTCATGGCGG+AGG 0.557442 8_2:+68435958 Msa1264860:exon
GATCGAGTCTGTCTCACTCA+TGG 0.575198 8_2:+68435952 Msa1264860:exon
TGTAGCGAGTGAAACAGTGC+CGG 0.576683 8_2:-68437482 None:intergenic
AATTATTGCAGGTTGACAAG+TGG 0.580545 8_2:+68438810 Msa1264860:intron
GTAGCGAGTGAAACAGTGCC+GGG 0.582425 8_2:-68437481 None:intergenic
GGGATGCTTACCCATTCACC+GGG 0.582773 8_2:-68437668 None:intergenic
ATTCACCGGGGCAAAGAGAA+CGG 0.617282 8_2:-68437655 None:intergenic
AAACACACATGCTTTCAAAG+AGG 0.618056 8_2:-68438866 None:intergenic
TGGAATGAACAGAGGGACAA+TGG 0.619086 8_2:+68438830 Msa1264860:CDS
TATTGATCCACACCATGACT+CGG 0.619574 8_2:-68438970 None:intergenic
TCCATGTCTCAGAAGTCACA+AGG 0.620749 8_2:-68438894 None:intergenic
TTCCTACAACTAATCAAACC+CGG 0.624103 8_2:+68437463 Msa1264860:CDS
TGACAAGTGGAATGAACAGA+GGG 0.629992 8_2:+68438823 Msa1264860:CDS
ACAGTAAAAGGTGAAAACTC+AGG 0.633665 8_2:+68437605 Msa1264860:CDS
TTGACAAGTGGAATGAACAG+AGG 0.706038 8_2:+68438822 Msa1264860:CDS
CCATGTCTCAGAAGTCACAA+GGG 0.710508 8_2:-68438893 None:intergenic
GGATGCTTACCCATTCACCG+GGG 0.811773 8_2:-68437667 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAATTAAAAATGAATATT+GGG - chr8_2:68436002-68436021 None:intergenic 10.0%
!! TTGAAATTAAAAATGAATAT+TGG - chr8_2:68436003-68436022 None:intergenic 10.0%
!!! TTTTAGCTTATATTAATTAA+GGG - chr8_2:68436608-68436627 None:intergenic 10.0%
!!! TTTTTAGCTTATATTAATTA+AGG - chr8_2:68436609-68436628 None:intergenic 10.0%
!! ATTAAAATTAAAACACAAAT+GGG - chr8_2:68437339-68437358 None:intergenic 10.0%
!! ATAATTTGAATAAGATAAAT+TGG + chr8_2:68438377-68438396 Msa1264860:intron 10.0%
!! AAAAATACATATACTGTATT+TGG + chr8_2:68436519-68436538 Msa1264860:intron 15.0%
!!! TTTAGCTTATATTAATTAAG+GGG - chr8_2:68436607-68436626 None:intergenic 15.0%
!! AAGCTAAAAATACATATATT+TGG + chr8_2:68436619-68436638 Msa1264860:intron 15.0%
!! TAGATTTAAGAATTTACAAT+CGG - chr8_2:68436700-68436719 None:intergenic 15.0%
!! TTGTAAATTCTTAAATCTAT+TGG + chr8_2:68436701-68436720 Msa1264860:intron 15.0%
!! CATTAAAATTAAAACACAAA+TGG - chr8_2:68437340-68437359 None:intergenic 15.0%
!! AGTAAATATATTGAATCTTA+TGG - chr8_2:68438108-68438127 None:intergenic 15.0%
!!! TTCATTATAATATTTTGCAA+CGG - chr8_2:68438742-68438761 None:intergenic 15.0%
!!! TATTAGCTTAAAATGAAAAA+TGG - chr8_2:68439037-68439056 None:intergenic 15.0%
!! AAATATTCAAAGGAAACAAA+AGG - chr8_2:68436132-68436151 None:intergenic 20.0%
!! TTACTCTTAAACTAATCTTT+AGG + chr8_2:68436447-68436466 Msa1264860:intron 20.0%
!! TTGACAATTTCAAAACTATA+AGG + chr8_2:68436732-68436751 Msa1264860:intron 20.0%
!! CTACCATTAAATTAAATTGT+TGG - chr8_2:68436811-68436830 None:intergenic 20.0%
!! TATAAAGAAAATAACCATTG+TGG - chr8_2:68436981-68437000 None:intergenic 20.0%
!!! TTTTGTGATAACAAAGATAT+AGG - chr8_2:68437037-68437056 None:intergenic 20.0%
!! ACAAGATATAAAGATATATG+TGG - chr8_2:68437363-68437382 None:intergenic 20.0%
!! TTTACATTAAGGTAAATTTG+CGG - chr8_2:68437751-68437770 None:intergenic 20.0%
!! TAACATCAATCTTTACATTA+AGG - chr8_2:68437762-68437781 None:intergenic 20.0%
!!! AGTTTTAAACATTTAAGAAC+TGG + chr8_2:68437844-68437863 Msa1264860:intron 20.0%
!! CAATTAGTAATACTACATAT+GGG - chr8_2:68437941-68437960 None:intergenic 20.0%
!! TCAATTAGTAATACTACATA+TGG - chr8_2:68437942-68437961 None:intergenic 20.0%
!! AAATATATTGAATCTTATGG+AGG - chr8_2:68438105-68438124 None:intergenic 20.0%
!!! AAATTTTAAATAGCGAAACA+CGG - chr8_2:68438778-68438797 None:intergenic 20.0%
! AATTACTGAAAAGCGAAAAA+AGG - chr8_2:68436034-68436053 None:intergenic 25.0%
!! TTTTAAATTAATGTCGTTGC+TGG + chr8_2:68436187-68436206 Msa1264860:intron 25.0%
! TAAGCAATGTTATTAGATAC+AGG - chr8_2:68436307-68436326 None:intergenic 25.0%
! TTGCTTATTGTCAAATTAGA+AGG + chr8_2:68436320-68436339 Msa1264860:intron 25.0%
!!! CATCTTTGAAATATGCAAAT+AGG - chr8_2:68436385-68436404 None:intergenic 25.0%
!! TGAAAATCCAAAAAGTACAA+GGG - chr8_2:68436474-68436493 None:intergenic 25.0%
!! TTGAAAATCCAAAAAGTACA+AGG - chr8_2:68436475-68436494 None:intergenic 25.0%
! AGAAATGATATCGTTGAATA+GGG - chr8_2:68436578-68436597 None:intergenic 25.0%
! ATTAAATTAAATTGTTGGCG+AGG - chr8_2:68436806-68436825 None:intergenic 25.0%
!! TCGCCAACAATTTAATTTAA+TGG + chr8_2:68436805-68436824 Msa1264860:intron 25.0%
!! AATGGTAGTTTTTGTTAGTA+TGG + chr8_2:68436823-68436842 Msa1264860:intron 25.0%
! AGCACACTATAAAATGATTA+TGG - chr8_2:68436891-68436910 None:intergenic 25.0%
!! ATAATCATTTTATAGTGTGC+TGG + chr8_2:68436890-68436909 Msa1264860:intron 25.0%
! AAAAAATAAATTAATCCCCG+AGG - chr8_2:68436947-68436966 None:intergenic 25.0%
! TATGTAAATTGTGTCATAGA+GGG - chr8_2:68437164-68437183 None:intergenic 25.0%
! ATATGTAAATTGTGTCATAG+AGG - chr8_2:68437165-68437184 None:intergenic 25.0%
! ATTCATTGCTTAAAACTACA+TGG + chr8_2:68437263-68437282 Msa1264860:intron 25.0%
! TTAATCGTGACTTTAATTAC+AGG + chr8_2:68437576-68437595 Msa1264860:intron 25.0%
! TGCTAATGAAACAAAGTTAA+GGG - chr8_2:68437691-68437710 None:intergenic 25.0%
! TTGCTAATGAAACAAAGTTA+AGG - chr8_2:68437692-68437711 None:intergenic 25.0%
!! CTTAAATGTTTAAAACTAGC+TGG - chr8_2:68437841-68437860 None:intergenic 25.0%
! AAAAAGTTGAGAATTGAACT+GGG - chr8_2:68437904-68437923 None:intergenic 25.0%
! TAAAAAGTTGAGAATTGAAC+TGG - chr8_2:68437905-68437924 None:intergenic 25.0%
!! TTCTCAACTTTTTATGCATT+TGG + chr8_2:68437911-68437930 Msa1264860:intron 25.0%
! TATTCTAGTACATCGTTTAA+TGG + chr8_2:68437991-68438010 Msa1264860:intron 25.0%
!! TGTTTGCTGATATATTATTC+TGG + chr8_2:68438032-68438051 Msa1264860:intron 25.0%
!!! CTGATATATTATTCTGGTTT+TGG + chr8_2:68438038-68438057 Msa1264860:intron 25.0%
!!! TCTTTAGGATTTTACATGTT+AGG + chr8_2:68438175-68438194 Msa1264860:intron 25.0%
!! CAATTTTCTTTGTTGACAAA+TGG + chr8_2:68438198-68438217 Msa1264860:intron 25.0%
!!! AGTATTGACTAGAATAATGA+TGG + chr8_2:68438241-68438260 Msa1264860:intron 25.0%
! TTCATTGAAGATAAATGTCT+AGG - chr8_2:68438285-68438304 None:intergenic 25.0%
! ATCATAGTTACAATTTACCA+AGG - chr8_2:68438456-68438475 None:intergenic 25.0%
! AAAAATACAGACATCGAAAT+TGG - chr8_2:68438493-68438512 None:intergenic 25.0%
!!! CTGTATTTTTTGTTAGGATT+AGG + chr8_2:68438503-68438522 Msa1264860:intron 25.0%
! TGTCTAGAGATTAATTAGAA+GGG - chr8_2:68438585-68438604 None:intergenic 25.0%
! ATGTCTAGAGATTAATTAGA+AGG - chr8_2:68438586-68438605 None:intergenic 25.0%
! TTCATGACAAATTTGAATTC+TGG + chr8_2:68438700-68438719 Msa1264860:intron 25.0%
! AAAATGGTTTCAAGAATTTG+TGG - chr8_2:68439021-68439040 None:intergenic 25.0%
GAATATGCAAAAGCGAAAAT+GGG - chr8_2:68436068-68436087 None:intergenic 30.0%
TGAATATGCAAAAGCGAAAA+TGG - chr8_2:68436069-68436088 None:intergenic 30.0%
CAGGAAGGAAAAATATTCAA+AGG - chr8_2:68436142-68436161 None:intergenic 30.0%
CTCCACATAATTCAAAATCA+GGG - chr8_2:68436264-68436283 None:intergenic 30.0%
ATTAGATACAGGTTAGTAGA+AGG - chr8_2:68436296-68436315 None:intergenic 30.0%
TTTAATGACGTCAAGCAAAT+TGG - chr8_2:68436347-68436366 None:intergenic 30.0%
TGCTTGACGTCATTAAAAAT+AGG + chr8_2:68436350-68436369 Msa1264860:intron 30.0%
TGTCTAACCTTTACAATTTC+AGG + chr8_2:68436409-68436428 Msa1264860:intron 30.0%
GTCTAACCTTTACAATTTCA+GGG + chr8_2:68436410-68436429 Msa1264860:intron 30.0%
TCTAACCTTTACAATTTCAG+GGG + chr8_2:68436411-68436430 Msa1264860:intron 30.0%
!!! TTTTAGCTTATATTCGAGAC+TGG - chr8_2:68436503-68436522 None:intergenic 30.0%
CAGAAATGATATCGTTGAAT+AGG - chr8_2:68436579-68436598 None:intergenic 30.0%
CTCTACTTAATCAAACCAAA+AGG + chr8_2:68436852-68436871 Msa1264860:intron 30.0%
! GGCTATTAATTTAGACCTTT+TGG - chr8_2:68436870-68436889 None:intergenic 30.0%
!! TTTGAATATTGACTCCACAA+TGG + chr8_2:68436964-68436983 Msa1264860:intron 30.0%
AAACTAGAACCAACATTAGA+CGG - chr8_2:68437123-68437142 None:intergenic 30.0%
! TTACGTTTTCTTCGTTCTTA+TGG + chr8_2:68437216-68437235 Msa1264860:intron 30.0%
AAGCAACACAATATTAAGTC+AGG - chr8_2:68437400-68437419 None:intergenic 30.0%
TCTTAACTTACTCGATTACT+TGG + chr8_2:68437715-68437734 Msa1264860:intron 30.0%
GTGAAACTTAATGCGATTTA+TGG + chr8_2:68437782-68437801 Msa1264860:intron 30.0%
! AAATGTTTAAAACTAGCTGG+TGG - chr8_2:68437838-68437857 None:intergenic 30.0%
ATAAAGGGCTAACAGATAAA+TGG - chr8_2:68438076-68438095 None:intergenic 30.0%
TTATGGAGGTTTGACATAAA+GGG - chr8_2:68438091-68438110 None:intergenic 30.0%
CTTATTATCTCCATGACTAA+TGG + chr8_2:68438126-68438145 Msa1264860:intron 30.0%
TGAAGATAAATGTCTAGGAA+GGG - chr8_2:68438280-68438299 None:intergenic 30.0%
TTGAAGATAAATGTCTAGGA+AGG - chr8_2:68438281-68438300 None:intergenic 30.0%
AGATTAATTTCAAGCAACCA+TGG - chr8_2:68438326-68438345 None:intergenic 30.0%
TTAATCTTCATGCTTTGTAC+TGG + chr8_2:68438339-68438358 Msa1264860:intron 30.0%
!!! CGATGTCTGTATTTTTTGTT+AGG + chr8_2:68438497-68438516 Msa1264860:intron 30.0%
TCATGAAATTTGACCTAAGT+TGG - chr8_2:68438687-68438706 None:intergenic 30.0%
TGTTTGATGCAAATTATTGC+AGG + chr8_2:68438799-68438818 Msa1264860:intron 30.0%
GAAATTCTTGAACATTCTGT+TGG + chr8_2:68438915-68438934 Msa1264860:three_prime_UTR 30.0%
ACAGAGAAAACGAAAGGAAA+TGG - chr8_2:68435910-68435929 None:intergenic 35.0%
GAAAGAACAGAGAAAACGAA+AGG - chr8_2:68435916-68435935 None:intergenic 35.0%
! TGAATATTGGGTTGTGATTC+AGG - chr8_2:68435990-68436009 None:intergenic 35.0%
! AGCCCTGATTTTGAATTATG+TGG + chr8_2:68436259-68436278 Msa1264860:intron 35.0%
GCTCCACATAATTCAAAATC+AGG - chr8_2:68436265-68436284 None:intergenic 35.0%
CTAACCTTTACAATTTCAGG+GGG + chr8_2:68436412-68436431 Msa1264860:intron 35.0%
TAACCTTTACAATTTCAGGG+GGG + chr8_2:68436413-68436432 Msa1264860:intron 35.0%
! TTTAGGTCCCTTGTACTTTT+TGG + chr8_2:68436464-68436483 Msa1264860:intron 35.0%
! AAGGACGCAAAAAAGTACAA+GGG - chr8_2:68436651-68436670 None:intergenic 35.0%
! TAAGGACGCAAAAAAGTACA+AGG - chr8_2:68436652-68436671 None:intergenic 35.0%
CCATTAGAGGACTGATTATA+AGG - chr8_2:68436670-68436689 None:intergenic 35.0%
CCTTATAATCAGTCCTCTAA+TGG + chr8_2:68436667-68436686 Msa1264860:intron 35.0%
ATAATCAGTCCTCTAATGGT+AGG + chr8_2:68436671-68436690 Msa1264860:intron 35.0%
TAATCAGTCCTCTAATGGTA+GGG + chr8_2:68436672-68436691 Msa1264860:intron 35.0%
TATAAGGACCTTAGTTTCAG+TGG + chr8_2:68436748-68436767 Msa1264860:intron 35.0%
TGAACATCCCACAAAATGAA+AGG + chr8_2:68436780-68436799 Msa1264860:intron 35.0%
! ATCATTTTATAGTGTGCTGG+TGG + chr8_2:68436893-68436912 Msa1264860:intron 35.0%
TTAAGTTAGCCGTCTAATGT+TGG + chr8_2:68437111-68437130 Msa1264860:intron 35.0%
!!! GTTTTTAGCTCAATCTGGAA+AGG - chr8_2:68437423-68437442 None:intergenic 35.0%
GTAGGAAAACGAAAATCAAC+AGG - chr8_2:68437450-68437469 None:intergenic 35.0%
TTCCTACAACTAATCAAACC+CGG + chr8_2:68437463-68437482 Msa1264860:CDS 35.0%
ACAGTAAAAGGTGAAAACTC+AGG + chr8_2:68437605-68437624 Msa1264860:CDS 35.0%
ACTTACTCGATTACTTGGTT+CGG + chr8_2:68437720-68437739 Msa1264860:intron 35.0%
! TTTAAAACTAGCTGGTGGAA+AGG - chr8_2:68437833-68437852 None:intergenic 35.0%
CTTATGGAGGTTTGACATAA+AGG - chr8_2:68438092-68438111 None:intergenic 35.0%
TAGACGACATACATAAGACA+CGG - chr8_2:68438153-68438172 None:intergenic 35.0%
!! TGTATGTCGTCTAGTTCTTT+AGG + chr8_2:68438160-68438179 Msa1264860:intron 35.0%
TTTACCAAGGACTGATGTAT+GGG - chr8_2:68438443-68438462 None:intergenic 35.0%
ATTTACCAAGGACTGATGTA+TGG - chr8_2:68438444-68438463 None:intergenic 35.0%
! ATTAGGCTAGTGAATTTGCT+TGG + chr8_2:68438520-68438539 Msa1264860:intron 35.0%
CTAGAGATTAATTAGAAGGG+CGG - chr8_2:68438582-68438601 None:intergenic 35.0%
!! AAGTTGGTCTTTGCAAAACT+GGG - chr8_2:68438671-68438690 None:intergenic 35.0%
!! TAAGTTGGTCTTTGCAAAAC+TGG - chr8_2:68438672-68438691 None:intergenic 35.0%
! AGTTTTGCAAAGACCAACTT+AGG + chr8_2:68438671-68438690 Msa1264860:intron 35.0%
! AATTATTGCAGGTTGACAAG+TGG + chr8_2:68438810-68438829 Msa1264860:intron 35.0%
AAACACACATGCTTTCAAAG+AGG - chr8_2:68438869-68438888 None:intergenic 35.0%
TGATTATCTTTACCGAGTCA+TGG + chr8_2:68438958-68438977 Msa1264860:three_prime_UTR 35.0%
TGCAAAAGCGAAAATGGGAA+AGG - chr8_2:68436063-68436082 None:intergenic 40.0%
AATGAAATGCTGCAAACGTC+AGG - chr8_2:68436161-68436180 None:intergenic 40.0%
TTGAATTATGTGGAGCAGCT+TGG + chr8_2:68436269-68436288 Msa1264860:intron 40.0%
TTACCCCCCTGAAATTGTAA+AGG - chr8_2:68436419-68436438 None:intergenic 40.0%
TACAATTTCAGGGGGGTAAT+TGG + chr8_2:68436420-68436439 Msa1264860:intron 40.0%
!! TTTTATAGTGTGCTGGTGGA+CGG + chr8_2:68436897-68436916 Msa1264860:intron 40.0%
TCAATATGTCACAACTGCCT+CGG + chr8_2:68436927-68436946 Msa1264860:intron 40.0%
CGCTGTGATCAAATGTCAAA+AGG - chr8_2:68437089-68437108 None:intergenic 40.0%
TAAGTCAGGAAAAAGACTGC+AGG - chr8_2:68437386-68437405 None:intergenic 40.0%
!!! GTGCTGTTTTTAGCTCAATC+TGG - chr8_2:68437428-68437447 None:intergenic 40.0%
TACAGGTGCATGACAGTAAA+AGG + chr8_2:68437593-68437612 Msa1264860:intron 40.0%
GCAAAGAGAACGGTAGTATT+TGG - chr8_2:68437648-68437667 None:intergenic 40.0%
CTTACTCGATTACTTGGTTC+GGG + chr8_2:68437721-68437740 Msa1264860:intron 40.0%
!! TTAACTTGTTCCAAGAGCCA+TGG + chr8_2:68438306-68438325 Msa1264860:intron 40.0%
GTAATCACTAGTGTCATGCA+TGG - chr8_2:68438628-68438647 None:intergenic 40.0%
TTGACAAGTGGAATGAACAG+AGG + chr8_2:68438822-68438841 Msa1264860:CDS 40.0%
TGACAAGTGGAATGAACAGA+GGG + chr8_2:68438823-68438842 Msa1264860:CDS 40.0%
TATTGATCCACACCATGACT+CGG - chr8_2:68438973-68438992 None:intergenic 40.0%
AGTCATGGTGTGGATCAATA+AGG + chr8_2:68438973-68438992 Msa1264860:three_prime_UTR 40.0%
AAATGCTGCAAACGTCAGGA+AGG - chr8_2:68436157-68436176 None:intergenic 45.0%
AATCGGATCCCTACCATTAG+AGG - chr8_2:68436683-68436702 None:intergenic 45.0%
AAGGACCTTAGTTTCAGTGG+AGG + chr8_2:68436751-68436770 Msa1264860:intron 45.0%
ACAAGCCTCCACTGAAACTA+AGG - chr8_2:68436759-68436778 None:intergenic 45.0%
CAATATGTCACAACTGCCTC+GGG + chr8_2:68436928-68436947 Msa1264860:intron 45.0%
AATATGTCACAACTGCCTCG+GGG + chr8_2:68436929-68436948 Msa1264860:intron 45.0%
! TGCCGGGTTTGATTAGTTGT+AGG - chr8_2:68437468-68437487 None:intergenic 45.0%
CTCGCTACATAGAGTTTCAC+AGG + chr8_2:68437496-68437515 Msa1264860:CDS 45.0%
GCTACATAGAGTTTCACAGG+TGG + chr8_2:68437499-68437518 Msa1264860:intron 45.0%
! CAGGTGGATTTCTTGACTCT+TGG + chr8_2:68437515-68437534 Msa1264860:intron 45.0%
AAGACACGGTCCATTAGTCA+TGG - chr8_2:68438139-68438158 None:intergenic 45.0%
TTTCAAGCAACCATGGCTCT+TGG - chr8_2:68438319-68438338 None:intergenic 45.0%
TGGAATGAACAGAGGGACAA+TGG + chr8_2:68438830-68438849 Msa1264860:CDS 45.0%
! AGGGACAATGGTACTTTTCC+AGG + chr8_2:68438842-68438861 Msa1264860:CDS 45.0%
ACATGCTTTCAAAGAGGTCC+TGG - chr8_2:68438863-68438882 None:intergenic 45.0%
CCATGTCTCAGAAGTCACAA+GGG - chr8_2:68438896-68438915 None:intergenic 45.0%
TCCATGTCTCAGAAGTCACA+AGG - chr8_2:68438897-68438916 None:intergenic 45.0%
ATCTTTACCGAGTCATGGTG+TGG + chr8_2:68438963-68438982 Msa1264860:three_prime_UTR 45.0%
GATCGAGTCTGTCTCACTCA+TGG + chr8_2:68435952-68435971 Msa1264860:exon 50.0%
! GGCGAGGCCTTTCATTTTGT+GGG - chr8_2:68436790-68436809 None:intergenic 50.0%
! TGGCGAGGCCTTTCATTTTG+TGG - chr8_2:68436791-68436810 None:intergenic 50.0%
TGTAGCGAGTGAAACAGTGC+CGG - chr8_2:68437485-68437504 None:intergenic 50.0%
TACTACCGTTCTCTTTGCCC+CGG + chr8_2:68437650-68437669 Msa1264860:CDS 50.0%
ATTCACCGGGGCAAAGAGAA+CGG - chr8_2:68437658-68437677 None:intergenic 50.0%
TTCTCTTTGCCCCGGTGAAT+GGG + chr8_2:68437658-68437677 Msa1264860:CDS 50.0%
AGGGATGCTTACCCATTCAC+CGG - chr8_2:68437672-68437691 None:intergenic 50.0%
TGTGCCCATACATCAGTCCT+TGG + chr8_2:68438436-68438455 Msa1264860:intron 50.0%
TGTCATGCATGGAGTCTGCT+GGG - chr8_2:68438617-68438636 None:intergenic 50.0%
!! CCCTTGTGACTTCTGAGACA+TGG + chr8_2:68438893-68438912 Msa1264860:three_prime_UTR 50.0%
CGAGTCTGTCTCACTCATGG+CGG + chr8_2:68435955-68435974 Msa1264860:exon 55.0%
! TATAGTGTGCTGGTGGACGG+TGG + chr8_2:68436900-68436919 Msa1264860:intron 55.0%
GTAGCGAGTGAAACAGTGCC+GGG - chr8_2:68437484-68437503 None:intergenic 55.0%
GTTCTCTTTGCCCCGGTGAA+TGG + chr8_2:68437657-68437676 Msa1264860:CDS 55.0%
GGATGCTTACCCATTCACCG+GGG - chr8_2:68437670-68437689 None:intergenic 55.0%
GGGATGCTTACCCATTCACC+GGG - chr8_2:68437671-68437690 None:intergenic 55.0%
GTGTCATGCATGGAGTCTGC+TGG - chr8_2:68438618-68438637 None:intergenic 55.0%
GTCTGTCTCACTCATGGCGG+AGG + chr8_2:68435958-68435977 Msa1264860:exon 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 68435896 68439095 68435896 ID=Msa1264860;Name=Msa1264860
chr8_2 mRNA 68435896 68439095 68435896 ID=Msa1264860-mRNA-1;Parent=Msa1264860;Name=Msa1264860-mRNA-1;_AED=0.03;_eAED=0.03;_QI=75|1|1|1|1|1|4|221|77
chr8_2 exon 68435896 68435979 68435896 ID=Msa1264860-mRNA-1:exon:22669;Parent=Msa1264860-mRNA-1
chr8_2 exon 68437429 68437517 68437429 ID=Msa1264860-mRNA-1:exon:22670;Parent=Msa1264860-mRNA-1
chr8_2 exon 68437598 68437679 68437598 ID=Msa1264860-mRNA-1:exon:22671;Parent=Msa1264860-mRNA-1
chr8_2 exon 68438821 68439095 68438821 ID=Msa1264860-mRNA-1:exon:22672;Parent=Msa1264860-mRNA-1
chr8_2 five_prime_UTR 68435896 68435970 68435896 ID=Msa1264860-mRNA-1:five_prime_utr;Parent=Msa1264860-mRNA-1
chr8_2 CDS 68435971 68435979 68435971 ID=Msa1264860-mRNA-1:cds;Parent=Msa1264860-mRNA-1
chr8_2 CDS 68437429 68437517 68437429 ID=Msa1264860-mRNA-1:cds;Parent=Msa1264860-mRNA-1
chr8_2 CDS 68437598 68437679 68437598 ID=Msa1264860-mRNA-1:cds;Parent=Msa1264860-mRNA-1
chr8_2 CDS 68438821 68438874 68438821 ID=Msa1264860-mRNA-1:cds;Parent=Msa1264860-mRNA-1
chr8_2 three_prime_UTR 68438875 68439095 68438875 ID=Msa1264860-mRNA-1:three_prime_utr;Parent=Msa1264860-mRNA-1
Gene Sequence

>Msa1264860

ATGGCGGAGATTGAGCTAAAAACAGCACCTGTTGATTTTCGTTTTCCTACAACTAATCAAACCCGGCACTGTTTCACTCGCTACATAGAGTTTCACAGGTGCATGACAGTAAAAGGTGAAAACTCAGGCGAATGTGAGAAATTTGCCAAATACTACCGTTCTCTTTGCCCCGGTGAATGGGTTGACAAGTGGAATGAACAGAGGGACAATGGTACTTTTCCAGGACCTCTTTGA

Protein sequence

>Msa1264860

MAEIELKTAPVDFRFPTTNQTRHCFTRYIEFHRCMTVKGENSGECEKFAKYYRSLCPGEWVDKWNEQRDNGTFPGPL*