Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463650 | XP_024638184.1 | 100.000 | 77 | 0 | 0 | 1 | 77 | 1 | 77 | 9.93e-52 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463650 | sp|Q9SUD3|CX6B3_ARATH | 86.667 | 75 | 10 | 0 | 3 | 77 | 4 | 78 | 1.13e-46 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463650 | A0A396IJH6 | 100.000 | 77 | 0 | 0 | 1 | 77 | 1 | 77 | 4.74e-52 | 166 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003560 | Msa1463650 | -0.835145 | 1.990082e-56 | -8.615850e-47 |
| Msa0051200 | Msa1463650 | -0.812813 | 3.509483e-51 | -8.615850e-47 |
| Msa0051460 | Msa1463650 | -0.829501 | 4.969240e-55 | -8.615850e-47 |
| Msa0058270 | Msa1463650 | -0.834533 | 2.837738e-56 | -8.615850e-47 |
| Msa0094940 | Msa1463650 | 0.800341 | 1.508411e-48 | -8.615850e-47 |
| Msa1376890 | Msa1463650 | -0.812346 | 4.440398e-51 | -8.615850e-47 |
| Msa1377070 | Msa1463650 | -0.817155 | 3.819232e-52 | -8.615850e-47 |
| Msa1397260 | Msa1463650 | -0.802758 | 4.819826e-49 | -8.615850e-47 |
| Msa1401140 | Msa1463650 | -0.802397 | 5.720550e-49 | -8.615850e-47 |
| Msa1407650 | Msa1463650 | -0.804889 | 1.739476e-49 | -8.615850e-47 |
| Msa1444250 | Msa1463650 | 0.815092 | 1.103773e-51 | -8.615850e-47 |
| Msa1451620 | Msa1463650 | 0.817051 | 4.028911e-52 | -8.615850e-47 |
| Msa0613460 | Msa1463650 | -0.821427 | 4.061511e-53 | -8.615850e-47 |
| Msa0622600 | Msa1463650 | -0.840549 | 8.132931e-58 | -8.615850e-47 |
| Msa0647830 | Msa1463650 | -0.801104 | 1.053747e-48 | -8.615850e-47 |
| Msa0648370 | Msa1463650 | 0.809389 | 1.938779e-50 | -8.615850e-47 |
| Msa0654010 | Msa1463650 | -0.811090 | 8.330633e-51 | -8.615850e-47 |
| Msa0658570 | Msa1463650 | -0.812492 | 4.125766e-51 | -8.615850e-47 |
| Msa0660870 | Msa1463650 | -0.819648 | 1.039926e-52 | -8.615850e-47 |
| Msa0690440 | Msa1463650 | -0.812214 | 4.745218e-51 | -8.615850e-47 |
| Msa0696410 | Msa1463650 | -0.814403 | 1.568213e-51 | -8.615850e-47 |
| Msa0716750 | Msa1463650 | -0.833217 | 6.053068e-56 | -8.615850e-47 |
| Msa0724560 | Msa1463650 | -0.815156 | 1.068111e-51 | -8.615850e-47 |
| Msa0768680 | Msa1463650 | 0.838293 | 3.133682e-57 | -8.615850e-47 |
| Msa0768710 | Msa1463650 | 0.840767 | 7.131466e-58 | -8.615850e-47 |
| Msa0799280 | Msa1463650 | -0.819457 | 1.149961e-52 | -8.615850e-47 |
| Msa0818110 | Msa1463650 | -0.832514 | 9.049300e-56 | -8.615850e-47 |
| Msa0833690 | Msa1463650 | 0.818022 | 2.434222e-52 | -8.615850e-47 |
| Msa0143920 | Msa1463650 | -0.821294 | 4.357685e-53 | -8.615850e-47 |
| Msa0169820 | Msa1463650 | -0.809882 | 1.518598e-50 | -8.615850e-47 |
| Msa0183010 | Msa1463650 | 0.810110 | 1.356297e-50 | -8.615850e-47 |
| Msa0199800 | Msa1463650 | 0.800841 | 1.192818e-48 | -8.615850e-47 |
| Msa0223270 | Msa1463650 | 0.802284 | 6.034715e-49 | -8.615850e-47 |
| Msa0226620 | Msa1463650 | 0.818859 | 1.573445e-52 | -8.615850e-47 |
| Msa0230640 | Msa1463650 | 0.810199 | 1.298233e-50 | -8.615850e-47 |
| Msa1225730 | Msa1463650 | 0.865453 | 5.839310e-65 | -8.615850e-47 |
| Msa1250310 | Msa1463650 | -0.806197 | 9.244965e-50 | -8.615850e-47 |
| Msa1256410 | Msa1463650 | -0.814310 | 1.643939e-51 | -8.615850e-47 |
| Msa1257800 | Msa1463650 | 0.823905 | 1.076674e-53 | -8.615850e-47 |
| Msa1258380 | Msa1463650 | 0.812166 | 4.861047e-51 | -8.615850e-47 |
| Msa1264860 | Msa1463650 | 0.980842 | 3.661762e-151 | -8.615850e-47 |
| Msa0377610 | Msa1463650 | 0.805127 | 1.551094e-49 | -8.615850e-47 |
| Msa0381600 | Msa1463650 | 0.803926 | 2.760255e-49 | -8.615850e-47 |
| Msa0389360 | Msa1463650 | -0.819434 | 1.163693e-52 | -8.615850e-47 |
| Msa0392040 | Msa1463650 | 0.842722 | 2.174399e-58 | -8.615850e-47 |
| Msa0438050 | Msa1463650 | -0.837625 | 4.655941e-57 | -8.615850e-47 |
| Msa0457010 | Msa1463650 | -0.832205 | 1.079529e-55 | -8.615850e-47 |
| Msa0469940 | Msa1463650 | 0.843161 | 1.661006e-58 | -8.615850e-47 |
| Msa0482190 | Msa1463650 | 0.812525 | 4.058325e-51 | -8.615850e-47 |
| Msa1021340 | Msa1463650 | -0.823325 | 1.471593e-53 | -8.615850e-47 |
| Msa1054410 | Msa1463650 | -0.848191 | 7.171083e-60 | -8.615850e-47 |
| Msa0260270 | Msa1463650 | 0.801116 | 1.047828e-48 | -8.615850e-47 |
| Msa0344690 | Msa1463650 | 0.832368 | 9.840544e-56 | -8.615850e-47 |
| Msa1132630 | Msa1463650 | 0.849452 | 3.204520e-60 | -8.615850e-47 |
| Msa1144720 | Msa1463650 | 0.851841 | 6.822461e-61 | -8.615850e-47 |
| Msa1171730 | Msa1463650 | -0.824440 | 8.062951e-54 | -8.615850e-47 |
| Msa1204440 | Msa1463650 | -0.807681 | 4.488168e-50 | -8.615850e-47 |
| Msa1214690 | Msa1463650 | 0.806466 | 8.116524e-50 | -8.615850e-47 |
| Msa1222110 | Msa1463650 | 0.855433 | 6.328899e-62 | -8.615850e-47 |
| Msa1222280 | Msa1463650 | -0.833827 | 4.263418e-56 | -8.615850e-47 |
| Msa0485500 | Msa1463650 | 0.808013 | 3.814407e-50 | -8.615850e-47 |
| Msa0521620 | Msa1463650 | -0.803251 | 3.810414e-49 | -8.615850e-47 |
| Msa0532810 | Msa1463650 | 0.848143 | 7.392682e-60 | -8.615850e-47 |
| Msa0553460 | Msa1463650 | -0.808353 | 3.229439e-50 | -8.615850e-47 |
| Msa0567020 | Msa1463650 | -0.810029 | 1.412507e-50 | -8.615850e-47 |
| Msa0848900 | Msa1463650 | -0.813617 | 2.338065e-51 | -8.615850e-47 |
| Msa0881160 | Msa1463650 | -0.839699 | 1.355484e-57 | -8.615850e-47 |
| Msa0881210 | Msa1463650 | 0.851904 | 6.547475e-61 | -8.615850e-47 |
| Msa0886330 | Msa1463650 | 0.800440 | 1.439648e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463650 | MtrunA17_Chr4g0073271 | 100.000 | 77 | 0 | 0 | 1 | 77 | 1 | 77 | 9.13e-56 | 166 |
| Msa1463650 | MtrunA17_Chr5g0426571 | 81.333 | 75 | 14 | 0 | 3 | 77 | 109 | 183 | 1.87e-47 | 148 |
| Msa1463650 | MtrunA17_Chr5g0400121 | 43.478 | 69 | 38 | 1 | 7 | 74 | 62 | 130 | 9.29e-20 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463650 | AT4G28060.1 | 86.667 | 75 | 10 | 0 | 3 | 77 | 4 | 78 | 1.15e-47 | 145 |
| Msa1463650 | AT5G57815.1 | 86.667 | 75 | 10 | 0 | 3 | 77 | 4 | 78 | 1.65e-47 | 145 |
| Msa1463650 | AT1G22450.1 | 77.333 | 75 | 17 | 0 | 3 | 77 | 116 | 190 | 1.55e-45 | 144 |
| Msa1463650 | AT1G32710.1 | 45.455 | 55 | 30 | 0 | 9 | 63 | 59 | 113 | 3.39e-15 | 65.5 |
Find 35 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAGGTGCATGACAGTAAA+AGG | 0.296713 | tig0043556:-3212 | Msa1463650:intron |
| GTTCTCTTTGCCCCGGTGAA+TGG | 0.301610 | tig0043556:-3148 | Msa1463650:CDS |
| GCAAAGAGAACGGTAGTATT+TGG | 0.308371 | tig0043556:+3160 | Msa1463650:intergenic |
| TTCTCTTTGCCCCGGTGAAT+GGG | 0.347711 | tig0043556:-3147 | Msa1463650:intron |
| ACAGAGAAAACGAAAGGAAA+TGG | 0.392788 | tig0043556:+4919 | Msa1463650:intergenic |
| AAAATAGTTTCAAGAATTTG+TGG | 0.419375 | tig0043556:+1787 | Msa1463650:intergenic |
| TGCCGGGTTTGATTAGTTGT+AGG | 0.456773 | tig0043556:+3340 | Msa1463650:intergenic |
| GAAATTCTTGAACATTCTGT+TGG | 0.479714 | tig0043556:-1890 | Msa1463650:three_prime_UTR |
| AGTCATGGTGTGGATCAATA+AGG | 0.481010 | tig0043556:-1832 | Msa1463650:three_prime_UTR |
| CTCGCTACATAGAGTTTCAC+AGG | 0.490501 | tig0043556:-3309 | Msa1463650:intron |
| CCCTTGTGACTTCTGAGACA+TGG | 0.492635 | tig0043556:-1912 | Msa1463650:three_prime_UTR |
| GTAGGAAAACGAAAATCAAC+AGG | 0.493074 | tig0043556:+3358 | Msa1463650:intergenic |
| ACATGCTTTCAAAGAGGTCC+TGG | 0.510554 | tig0043556:+1945 | Msa1463650:intergenic |
| AGGGATGCTTACCCATTCAC+CGG | 0.515653 | tig0043556:+3136 | Msa1463650:intergenic |
| GAAAGAACAGAGAAAACGAA+AGG | 0.527911 | tig0043556:+4913 | Msa1463650:intergenic |
| TGATTATCTTTACCGAGTCA+TGG | 0.528804 | tig0043556:-1847 | Msa1463650:three_prime_UTR |
| TACTACCGTTCTCTTTGCCC+CGG | 0.531700 | tig0043556:-3155 | Msa1463650:CDS |
| ATCTTTACCGAGTCATGGTG+TGG | 0.548557 | tig0043556:-1842 | Msa1463650:three_prime_UTR |
| GTCTGTCTCACTCATGGCGG+AGG | 0.557442 | tig0043556:-4868 | Msa1463650:intron |
| GATCGAGTCTGTCTCACTCA+TGG | 0.575198 | tig0043556:-4874 | Msa1463650:exon |
| TGTAGCGAGTGAAACAGTGC+CGG | 0.576683 | tig0043556:+3323 | Msa1463650:intergenic |
| AATTATTGCAGGTTGACAAG+TGG | 0.580545 | tig0043556:-1995 | Msa1463650:intron |
| GTAGCGAGTGAAACAGTGCC+GGG | 0.582425 | tig0043556:+3324 | Msa1463650:intergenic |
| GGGATGCTTACCCATTCACC+GGG | 0.582773 | tig0043556:+3137 | Msa1463650:intergenic |
| ATTCACCGGGGCAAAGAGAA+CGG | 0.617282 | tig0043556:+3150 | Msa1463650:intergenic |
| AAACACACATGCTTTCAAAG+AGG | 0.618056 | tig0043556:+1939 | Msa1463650:intergenic |
| TGGAATGAACAGAGGGACAA+TGG | 0.619086 | tig0043556:-1975 | Msa1463650:CDS |
| TATTGATCCACACCATGACT+CGG | 0.619574 | tig0043556:+1835 | Msa1463650:intergenic |
| TCCATGTCTCAGAAGTCACA+AGG | 0.620749 | tig0043556:+1911 | Msa1463650:intergenic |
| TTCCTACAACTAATCAAACC+CGG | 0.624103 | tig0043556:-3342 | Msa1463650:CDS |
| TGACAAGTGGAATGAACAGA+GGG | 0.629992 | tig0043556:-1982 | Msa1463650:CDS |
| ACAGTAAAAGGTGAAAACTC+AGG | 0.633665 | tig0043556:-3200 | Msa1463650:CDS |
| TTGACAAGTGGAATGAACAG+AGG | 0.706038 | tig0043556:-1983 | Msa1463650:CDS |
| CCATGTCTCAGAAGTCACAA+GGG | 0.710508 | tig0043556:+1912 | Msa1463640:intergenic |
| GGATGCTTACCCATTCACCG+GGG | 0.811773 | tig0043556:+3138 | Msa1463640:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAATTAAAAATGAATATT+GGG | + | tig0043556:1840-1859 | Msa1463650:intergenic | 10.0% |
| !! | TTGAAATTAAAAATGAATAT+TGG | + | tig0043556:1841-1860 | Msa1463650:intergenic | 10.0% |
| !!! | TTTTAGCTTATATTAATTAA+GGG | + | tig0043556:2470-2489 | Msa1463650:intergenic | 10.0% |
| !!! | TTTTTAGCTTATATTAATTA+AGG | + | tig0043556:2471-2490 | Msa1463650:intergenic | 10.0% |
| !! | ATTAAAATTAAAACACAAAT+GGG | + | tig0043556:3198-3217 | Msa1463650:intergenic | 10.0% |
| !! | ATAATTTGAATAAGATAAAT+TGG | - | tig0043556:4236-4255 | Msa1463650:intron | 10.0% |
| !! | AAGCTAAAAATACATATATT+TGG | - | tig0043556:2381-2400 | Msa1463650:intron | 15.0% |
| !!! | TTTAGCTTATATTAATTAAG+GGG | + | tig0043556:2469-2488 | Msa1463650:intergenic | 15.0% |
| !! | AAGCTAAAAATACATATATT+TGG | - | tig0043556:2381-2400 | Msa1463650:intron | 15.0% |
| !! | TAGATTTAAGAATTTACAAT+CGG | + | tig0043556:2562-2581 | Msa1463650:intergenic | 15.0% |
| !! | TTGTAAATTCTTAAATCTAT+TGG | - | tig0043556:2563-2582 | Msa1463650:intron | 15.0% |
| !! | CATTAAAATTAAAACACAAA+TGG | + | tig0043556:3199-3218 | Msa1463650:intergenic | 15.0% |
| !! | AGTAAATATATTGAATCTTA+TGG | + | tig0043556:3967-3986 | Msa1463650:intergenic | 15.0% |
| !!! | TTCATTATAATATTTTGCAA+CGG | + | tig0043556:4601-4620 | Msa1463650:intergenic | 15.0% |
| !! | TTACTCTTAAACTAATCTTT+AGG | - | tig0043556:2314-2333 | Msa1463650:intron | 20.0% |
| !! | TACTCTTAAACTAATCTTTA+GGG | - | tig0043556:2315-2334 | Msa1463650:intron | 20.0% |
| !! | TTGACAATTTCAAAACTATA+AGG | - | tig0043556:2594-2613 | Msa1463650:intron | 20.0% |
| !! | CTACCATTAAATTAAATTGT+TGG | + | tig0043556:2673-2692 | Msa1463650:intergenic | 20.0% |
| !! | TATAAAGAAAATAACCATTG+TGG | + | tig0043556:2843-2862 | Msa1463650:intergenic | 20.0% |
| !!! | TTTTGTGATAACAAAGATAT+AGG | + | tig0043556:2899-2918 | Msa1463650:intergenic | 20.0% |
| !! | ACAAGATATAAAGATATATG+TGG | + | tig0043556:3222-3241 | Msa1463650:intergenic | 20.0% |
| !! | TTTACATTAAGGTAAATTTG+CGG | + | tig0043556:3610-3629 | Msa1463650:intergenic | 20.0% |
| !! | TAACATCAATCTTTACATTA+AGG | + | tig0043556:3621-3640 | Msa1463650:intergenic | 20.0% |
| !!! | AGTTTTAAACATTTAAGAAC+TGG | - | tig0043556:3703-3722 | Msa1463650:intron | 20.0% |
| !! | AAATATATTGAATCTTATGG+AGG | + | tig0043556:3964-3983 | Msa1463650:intergenic | 20.0% |
| !!! | AAATTTTAAATAGCGAAACA+CGG | + | tig0043556:4637-4656 | Msa1463650:intergenic | 20.0% |
| !! | AAAATAGTTTCAAGAATTTG+TGG | + | tig0043556:4880-4899 | Msa1463650:intergenic | 20.0% |
| ! | AATTACTGAAAAGCGAAAAA+AGG | + | tig0043556:1872-1891 | Msa1463650:intergenic | 25.0% |
| !! | TTTTAAATTAATGTCGTTGC+TGG | - | tig0043556:2056-2075 | Msa1463650:intron | 25.0% |
| ! | TAAGCAATGTTATTAGATAC+AGG | + | tig0043556:2176-2195 | Msa1463650:intergenic | 25.0% |
| ! | TTGCTTATTGTCAAATTAGA+AGG | - | tig0043556:2189-2208 | Msa1463650:intron | 25.0% |
| !!! | CATCTTTGAAATATGCAAAT+AGG | + | tig0043556:2253-2272 | Msa1463650:intergenic | 25.0% |
| ! | TCTAACCTTTACAATTTCAA+GGG | - | tig0043556:2279-2298 | Msa1463650:intron | 25.0% |
| !! | TGAAAATCCAAAAAGTACAA+GGG | + | tig0043556:2341-2360 | Msa1463650:intergenic | 25.0% |
| !! | TTGAAAATCCAAAAAGTACA+AGG | + | tig0043556:2342-2361 | Msa1463650:intergenic | 25.0% |
| ! | AGAAATGATATCGTTGAATA+GGG | + | tig0043556:2440-2459 | Msa1463650:intergenic | 25.0% |
| !! | TCGCCAACAATTTAATTTAA+TGG | - | tig0043556:2667-2686 | Msa1463650:intron | 25.0% |
| !! | AATGGTAGTTTTTGTTAGTA+TGG | - | tig0043556:2685-2704 | Msa1463650:intron | 25.0% |
| ! | AGCACACTATAAAATGATTA+TGG | + | tig0043556:2753-2772 | Msa1463650:intergenic | 25.0% |
| !! | ATAATCATTTTATAGTGTGC+TGG | - | tig0043556:2752-2771 | Msa1463650:intron | 25.0% |
| ! | AAAAAATAAATTAATCCCCG+AGG | + | tig0043556:2809-2828 | Msa1463650:intergenic | 25.0% |
| ! | TATGTAAATTGTGTCATAGA+GGG | + | tig0043556:3027-3046 | Msa1463650:intergenic | 25.0% |
| ! | ATATGTAAATTGTGTCATAG+AGG | + | tig0043556:3028-3047 | Msa1463650:intergenic | 25.0% |
| ! | ATTCATTGCTTAAAACTACA+TGG | - | tig0043556:3126-3145 | Msa1463650:intron | 25.0% |
| ! | TTAATCGTGACTTTAATTAC+AGG | - | tig0043556:3435-3454 | Msa1463650:intron | 25.0% |
| ! | TGCTAATGAAACAAAGTTAA+GGG | + | tig0043556:3550-3569 | Msa1463650:intergenic | 25.0% |
| ! | TTGCTAATGAAACAAAGTTA+AGG | + | tig0043556:3551-3570 | Msa1463650:intergenic | 25.0% |
| !! | CTTAAATGTTTAAAACTAGC+TGG | + | tig0043556:3700-3719 | Msa1463650:intergenic | 25.0% |
| ! | AAAAAGTTGAGAATTGAACT+GGG | + | tig0043556:3763-3782 | Msa1463650:intergenic | 25.0% |
| ! | TAAAAAGTTGAGAATTGAAC+TGG | + | tig0043556:3764-3783 | Msa1463650:intergenic | 25.0% |
| !! | TTCTCAACTTTTTATGCATT+TGG | - | tig0043556:3770-3789 | Msa1463650:intron | 25.0% |
| ! | CAATTAGTACTACTACATAA+GGG | + | tig0043556:3800-3819 | Msa1463650:intergenic | 25.0% |
| ! | TCAATTAGTACTACTACATA+AGG | + | tig0043556:3801-3820 | Msa1463650:intergenic | 25.0% |
| ! | TATTCTAGTACATCGTTTAA+TGG | - | tig0043556:3850-3869 | Msa1463650:intron | 25.0% |
| !!! | GTTTAATGGAAGTTATTTTC+TGG | - | tig0043556:3864-3883 | Msa1463650:intron | 25.0% |
| !! | TGTTTGCTGATATATTATTC+TGG | - | tig0043556:3891-3910 | Msa1463650:intron | 25.0% |
| !!! | CTGATATATTATTCTGGTTT+TGG | - | tig0043556:3897-3916 | Msa1463650:intron | 25.0% |
| !!! | TCTTTAGGATTTTACATGTT+AGG | - | tig0043556:4034-4053 | Msa1463650:intron | 25.0% |
| !! | CAATTTTCTTTGTTGACAAA+TGG | - | tig0043556:4057-4076 | Msa1463650:intron | 25.0% |
| !!! | AGTATTGACTAGAATAATGA+TGG | - | tig0043556:4100-4119 | Msa1463650:intron | 25.0% |
| ! | TTCATTGAAGATAAATGTCT+AGG | + | tig0043556:4144-4163 | Msa1463650:intergenic | 25.0% |
| ! | ATCATAGTTACAATTTACCA+AGG | + | tig0043556:4315-4334 | Msa1463650:intergenic | 25.0% |
| ! | AAAAATACAGACATCGAAAT+TGG | + | tig0043556:4352-4371 | Msa1463650:intergenic | 25.0% |
| !!! | CTGTATTTTTTGTTAGGATT+AGG | - | tig0043556:4362-4381 | Msa1463650:intron | 25.0% |
| ! | TGTCTAGAGATTAATTAGAA+GGG | + | tig0043556:4444-4463 | Msa1463650:intergenic | 25.0% |
| ! | ATGTCTAGAGATTAATTAGA+AGG | + | tig0043556:4445-4464 | Msa1463650:intergenic | 25.0% |
| ! | TTTGTGACAAATTTGAATTC+TGG | - | tig0043556:4559-4578 | Msa1463650:intron | 25.0% |
| GAATATGCAAAAGCGAAAAT+GGG | + | tig0043556:1906-1925 | Msa1463650:intergenic | 30.0% | |
| TGAATATGCAAAAGCGAAAA+TGG | + | tig0043556:1907-1926 | Msa1463650:intergenic | 30.0% | |
| AGAATTACATGCAATCTTAC+AGG | + | tig0043556:1999-2018 | Msa1463650:intergenic | 30.0% | |
| CTCCACATAATTCAAAATCA+GGG | + | tig0043556:2133-2152 | Msa1463650:intergenic | 30.0% | |
| ATTAGATACAGGTTAGTAGA+AGG | + | tig0043556:2165-2184 | Msa1463650:intergenic | 30.0% | |
| TTTAATGACGTCAAGCAAAT+TGG | + | tig0043556:2216-2235 | Msa1463650:intergenic | 30.0% | |
| GTCTAACCTTTACAATTTCA+AGG | - | tig0043556:2278-2297 | Msa1463650:intron | 30.0% | |
| CTAACCTTTACAATTTCAAG+GGG | - | tig0043556:2280-2299 | Msa1463650:intron | 30.0% | |
| ATTACCCCTTGAAATTGTAA+AGG | + | tig0043556:2287-2306 | Msa1463650:intergenic | 30.0% | |
| TTACAATTTCAAGGGGTAAT+TGG | - | tig0043556:2287-2306 | Msa1463650:intron | 30.0% | |
| !!! | TTTTAGCTTATATTCGAGAC+TGG | + | tig0043556:2370-2389 | Msa1463650:intergenic | 30.0% |
| CAGAAATGATATCGTTGAAT+AGG | + | tig0043556:2441-2460 | Msa1463650:intergenic | 30.0% | |
| CTCTACTTAATCAAACCAAA+AGG | - | tig0043556:2714-2733 | Msa1463650:intron | 30.0% | |
| !! | TTTGAATATTGACTCCACAA+TGG | - | tig0043556:2826-2845 | Msa1463650:intron | 30.0% |
| AAACTAGAACCAACATTAGA+CGG | + | tig0043556:2986-3005 | Msa1463650:intergenic | 30.0% | |
| ! | TTACGTTTTCTTCGTTCTTA+TGG | - | tig0043556:3079-3098 | Msa1463650:intron | 30.0% |
| AAGCAACACAATATTAAGTC+AGG | + | tig0043556:3259-3278 | Msa1463650:intergenic | 30.0% | |
| TCTTAACTTACTGGATTACT+TGG | - | tig0043556:3574-3593 | Msa1463650:intron | 30.0% | |
| GTGAAACTTAATGCGATTTA+TGG | - | tig0043556:3641-3660 | Msa1463650:intron | 30.0% | |
| ! | AAATGTTTAAAACTAGCTGG+TGG | + | tig0043556:3697-3716 | Msa1463650:intergenic | 30.0% |
| ATAAAGGGCTAACAGATAAA+TGG | + | tig0043556:3935-3954 | Msa1463650:intergenic | 30.0% | |
| TTATGGAGGTTTGACATAAA+GGG | + | tig0043556:3950-3969 | Msa1463650:intergenic | 30.0% | |
| CTTATTATCTCCATGACTAA+TGG | - | tig0043556:3985-4004 | Msa1463650:intron | 30.0% | |
| TGAAGATAAATGTCTAGGAA+GGG | + | tig0043556:4139-4158 | Msa1463650:intergenic | 30.0% | |
| TTGAAGATAAATGTCTAGGA+AGG | + | tig0043556:4140-4159 | Msa1463650:intergenic | 30.0% | |
| AGATTAATTTCAAGCAACCA+TGG | + | tig0043556:4185-4204 | Msa1463650:intergenic | 30.0% | |
| TTAATCTTCATGCTTTGTAC+TGG | - | tig0043556:4198-4217 | Msa1463650:intron | 30.0% | |
| !!! | CGATGTCTGTATTTTTTGTT+AGG | - | tig0043556:4356-4375 | Msa1463650:intron | 30.0% |
| TCACAAAATTTGACCTAAGT+TGG | + | tig0043556:4546-4565 | Msa1463650:intergenic | 30.0% | |
| TGTTTGATGCAAATTATTGC+AGG | - | tig0043556:4658-4677 | Msa1463650:intron | 30.0% | |
| GAAATTCTTGAACATTCTGT+TGG | - | tig0043556:4774-4793 | Msa1463650:intron | 30.0% | |
| ACAGAGAAAACGAAAGGAAA+TGG | + | tig0043556:1748-1767 | None:intergenic | 35.0% | |
| GAAAGAACAGAGAAAACGAA+AGG | + | tig0043556:1754-1773 | None:intergenic | 35.0% | |
| ! | TGAATATTGGGTTGTGATTC+AGG | + | tig0043556:1828-1847 | Msa1463650:intergenic | 35.0% |
| CAGGAAGGAAAAATAGTCAA+AGG | + | tig0043556:1980-1999 | Msa1463650:intergenic | 35.0% | |
| TTACATGCAATCTTACAGGA+AGG | + | tig0043556:1995-2014 | Msa1463650:intergenic | 35.0% | |
| ! | AGCCCTGATTTTGAATTATG+TGG | - | tig0043556:2128-2147 | Msa1463650:intron | 35.0% |
| GCTCCACATAATTCAAAATC+AGG | + | tig0043556:2134-2153 | Msa1463650:intergenic | 35.0% | |
| ! | AAGGACGCAAAAAAGTACAA+GGG | + | tig0043556:2513-2532 | Msa1463650:intergenic | 35.0% |
| ! | TAAGGACGCAAAAAAGTACA+AGG | + | tig0043556:2514-2533 | Msa1463650:intergenic | 35.0% |
| CCATTAGAGGACTGATTATA+AGG | + | tig0043556:2532-2551 | Msa1463650:intergenic | 35.0% | |
| CCTTATAATCAGTCCTCTAA+TGG | - | tig0043556:2529-2548 | Msa1463650:intron | 35.0% | |
| ATAATCAGTCCTCTAATGGT+AGG | - | tig0043556:2533-2552 | Msa1463650:intron | 35.0% | |
| TAATCAGTCCTCTAATGGTA+GGG | - | tig0043556:2534-2553 | Msa1463650:intron | 35.0% | |
| TATAAGGACCTTAGTTTCAG+TGG | - | tig0043556:2610-2629 | Msa1463650:intron | 35.0% | |
| TGAACATCCCACAAAATGAA+AGG | - | tig0043556:2642-2661 | Msa1463650:intron | 35.0% | |
| ! | GGCTATTAATTCAGACCTTT+TGG | + | tig0043556:2732-2751 | Msa1463650:intergenic | 35.0% |
| ! | ATCATTTTATAGTGTGCTGG+TGG | - | tig0043556:2755-2774 | Msa1463650:intron | 35.0% |
| TTAAGTTAGCCGTCTAATGT+TGG | - | tig0043556:2974-2993 | Msa1463650:intron | 35.0% | |
| !!! | GTTTTTAGCTCAATCTGGAA+AGG | + | tig0043556:3282-3301 | Msa1463650:intergenic | 35.0% |
| GTAGGAAAACGAAAATCAAC+AGG | + | tig0043556:3309-3328 | Msa1463650:intergenic | 35.0% | |
| TTCCTACAACTAATCAAACC+CGG | - | tig0043556:3322-3341 | Msa1463650:CDS | 35.0% | |
| ACAGTAAAAGGTGAAAACTC+AGG | - | tig0043556:3464-3483 | Msa1463650:intron | 35.0% | |
| TAGCAAGCTTCTTAACTTAC+TGG | - | tig0043556:3565-3584 | Msa1463650:intron | 35.0% | |
| ACTTACTGGATTACTTGGTT+CGG | - | tig0043556:3579-3598 | Msa1463650:intron | 35.0% | |
| ! | TTTAAAACTAGCTGGTGGAA+AGG | + | tig0043556:3692-3711 | Msa1463650:intergenic | 35.0% |
| CTTATGGAGGTTTGACATAA+AGG | + | tig0043556:3951-3970 | Msa1463650:intergenic | 35.0% | |
| TAGACGACATACATAAGACA+CGG | + | tig0043556:4012-4031 | Msa1463650:intergenic | 35.0% | |
| !! | TGTATGTCGTCTAGTTCTTT+AGG | - | tig0043556:4019-4038 | Msa1463650:intron | 35.0% |
| TTTACCAAGGACTGATGTAT+GGG | + | tig0043556:4302-4321 | Msa1463650:intergenic | 35.0% | |
| ATTTACCAAGGACTGATGTA+TGG | + | tig0043556:4303-4322 | Msa1463650:intergenic | 35.0% | |
| ! | ATTAGGCTAGTGAATTTGCT+TGG | - | tig0043556:4379-4398 | Msa1463650:intron | 35.0% |
| CTAGAGATTAATTAGAAGGG+CGG | + | tig0043556:4441-4460 | Msa1463650:intergenic | 35.0% | |
| !! | AAGTTGGTCTTTGCAAAACT+GGG | + | tig0043556:4530-4549 | Msa1463650:intergenic | 35.0% |
| !! | TAAGTTGGTCTTTGCAAAAC+TGG | + | tig0043556:4531-4550 | Msa1463650:intergenic | 35.0% |
| ! | AGTTTTGCAAAGACCAACTT+AGG | - | tig0043556:4530-4549 | Msa1463650:intron | 35.0% |
| ! | AATTATTGCAGGTTGACAAG+TGG | - | tig0043556:4669-4688 | Msa1463650:intron | 35.0% |
| AAACACACATGCTTTCAAAG+AGG | + | tig0043556:4728-4747 | Msa1463650:intergenic | 35.0% | |
| TGATTATCTTTACCGAGTCA+TGG | - | tig0043556:4817-4836 | Msa1463650:intron | 35.0% | |
| TGCAAAAGCGAAAATGGGAA+AGG | + | tig0043556:1901-1920 | Msa1463650:intergenic | 40.0% | |
| TTGAATTATGTGGAGCAGCT+TGG | - | tig0043556:2138-2157 | Msa1463650:intron | 40.0% | |
| !! | TTTAGGGCCCTTGTACTTTT+TGG | - | tig0043556:2331-2350 | Msa1463650:intron | 40.0% |
| !! | TTTTATAGTGTGCTGGTGGA+CGG | - | tig0043556:2759-2778 | Msa1463650:intron | 40.0% |
| TCAATATGTCACAACTGCCT+CGG | - | tig0043556:2789-2808 | Msa1463650:intron | 40.0% | |
| CGCTGTGATCAAATGTCAAA+AGG | + | tig0043556:2952-2971 | Msa1463650:intergenic | 40.0% | |
| TAAGTCAGGAAAAAGACTGC+AGG | + | tig0043556:3245-3264 | Msa1463650:intergenic | 40.0% | |
| !!! | GTGCTGTTTTTAGCTCAATC+TGG | + | tig0043556:3287-3306 | Msa1463650:intergenic | 40.0% |
| TGAACATATAGCCAAGAGTC+AGG | + | tig0043556:3388-3407 | Msa1463650:intergenic | 40.0% | |
| TACAGGTGCATGACAGTAAA+AGG | - | tig0043556:3452-3471 | Msa1463650:intron | 40.0% | |
| GCAAAGAGAACGGTAGTATT+TGG | + | tig0043556:3507-3526 | Msa1463650:intergenic | 40.0% | |
| CTTACTGGATTACTTGGTTC+GGG | - | tig0043556:3580-3599 | Msa1463650:intron | 40.0% | |
| !! | TTAACTTGTTCCAAGAGCCA+TGG | - | tig0043556:4165-4184 | Msa1463650:intron | 40.0% |
| GTAATCACTAGTGTCATGCA+TGG | + | tig0043556:4487-4506 | Msa1463650:intergenic | 40.0% | |
| TTGACAAGTGGAATGAACAG+AGG | - | tig0043556:4681-4700 | Msa1463650:intron | 40.0% | |
| TGACAAGTGGAATGAACAGA+GGG | - | tig0043556:4682-4701 | Msa1463650:intron | 40.0% | |
| TATTGATCCACACCATGACT+CGG | + | tig0043556:4832-4851 | Msa1463650:intergenic | 40.0% | |
| AGTCATGGTGTGGATCAATA+AGG | - | tig0043556:4832-4851 | Msa1463650:intron | 40.0% | |
| AATCGGATCCCTACCATTAG+AGG | + | tig0043556:2545-2564 | Msa1463650:intergenic | 45.0% | |
| AAGGACCTTAGTTTCAGTGG+AGG | - | tig0043556:2613-2632 | Msa1463650:intron | 45.0% | |
| ACAAGCCTCCACTGAAACTA+AGG | + | tig0043556:2621-2640 | Msa1463650:intergenic | 45.0% | |
| ! | GGCGAGTCCTTTCATTTTGT+GGG | + | tig0043556:2652-2671 | Msa1463650:intergenic | 45.0% |
| ! | TGGCGAGTCCTTTCATTTTG+TGG | + | tig0043556:2653-2672 | Msa1463650:intergenic | 45.0% |
| CAATATGTCACAACTGCCTC+GGG | - | tig0043556:2790-2809 | Msa1463650:intron | 45.0% | |
| AATATGTCACAACTGCCTCG+GGG | - | tig0043556:2791-2810 | Msa1463650:intron | 45.0% | |
| ! | TGCCGGGTTTGATTAGTTGT+AGG | + | tig0043556:3327-3346 | Msa1463650:intergenic | 45.0% |
| CTCGCTACATAGAGTTTCAC+AGG | - | tig0043556:3355-3374 | Msa1463650:CDS | 45.0% | |
| GCTACATAGAGTTTCACAGG+TGG | - | tig0043556:3358-3377 | Msa1463650:CDS | 45.0% | |
| AAGACACGGTCCATTAGTCA+TGG | + | tig0043556:3998-4017 | Msa1463650:intergenic | 45.0% | |
| TTTCAAGCAACCATGGCTCT+TGG | + | tig0043556:4178-4197 | Msa1463650:intergenic | 45.0% | |
| TGGAATGAACAGAGGGACAA+TGG | - | tig0043556:4689-4708 | Msa1463650:intron | 45.0% | |
| ! | AGGGACAATGGTACTTTTCC+AGG | - | tig0043556:4701-4720 | Msa1463650:intron | 45.0% |
| ACATGCTTTCAAAGAGGTCC+TGG | + | tig0043556:4722-4741 | Msa1463650:intergenic | 45.0% | |
| CCATGTCTCAGAAGTCACAA+GGG | + | tig0043556:4755-4774 | Msa1463650:intergenic | 45.0% | |
| TCCATGTCTCAGAAGTCACA+AGG | + | tig0043556:4756-4775 | Msa1463650:intergenic | 45.0% | |
| ATCTTTACCGAGTCATGGTG+TGG | - | tig0043556:4822-4841 | Msa1463650:intron | 45.0% | |
| GATCGAGTCTGTCTCACTCA+TGG | - | tig0043556:1790-1809 | Msa1463650:three_prime_UTR | 50.0% | |
| TGTAGCGAGTGAAACAGTGC+CGG | + | tig0043556:3344-3363 | Msa1463650:intergenic | 50.0% | |
| ! | CAGGTGGATTTCCTGACTCT+TGG | - | tig0043556:3374-3393 | Msa1463650:CDS | 50.0% |
| TACTACCGTTCTCTTTGCCC+CGG | - | tig0043556:3509-3528 | Msa1463650:intron | 50.0% | |
| ATTCACCGGGGCAAAGAGAA+CGG | + | tig0043556:3517-3536 | Msa1463650:intergenic | 50.0% | |
| TTCTCTTTGCCCCGGTGAAT+GGG | - | tig0043556:3517-3536 | Msa1463650:intron | 50.0% | |
| AGGGATGCTTACCCATTCAC+CGG | + | tig0043556:3531-3550 | Msa1463650:intergenic | 50.0% | |
| TGTGCCCATACATCAGTCCT+TGG | - | tig0043556:4295-4314 | Msa1463650:intron | 50.0% | |
| TGTCATGCATGGAGTCTGCT+GGG | + | tig0043556:4476-4495 | Msa1463650:intergenic | 50.0% | |
| !! | CCCTTGTGACTTCTGAGACA+TGG | - | tig0043556:4752-4771 | Msa1463650:intron | 50.0% |
| CGAGTCTGTCTCACTCATGG+CGG | - | tig0043556:1793-1812 | Msa1463650:three_prime_UTR | 55.0% | |
| ! | TATAGTGTGCTGGTGGACGG+TGG | - | tig0043556:2762-2781 | Msa1463650:intron | 55.0% |
| GTAGCGAGTGAAACAGTGCC+GGG | + | tig0043556:3343-3362 | Msa1463650:intergenic | 55.0% | |
| GTTCTCTTTGCCCCGGTGAA+TGG | - | tig0043556:3516-3535 | Msa1463650:intron | 55.0% | |
| GGATGCTTACCCATTCACCG+GGG | + | tig0043556:3529-3548 | Msa1463650:intergenic | 55.0% | |
| GGGATGCTTACCCATTCACC+GGG | + | tig0043556:3530-3549 | Msa1463650:intergenic | 55.0% | |
| GTGTCATGCATGGAGTCTGC+TGG | + | tig0043556:4477-4496 | Msa1463650:intergenic | 55.0% | |
| GTCTGTCTCACTCATGGCGG+AGG | - | tig0043556:1796-1815 | Msa1463650:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0043556 | gene | 1734 | 4952 | 1734 | ID=Msa1463650;Name=Msa1463650 |
| tig0043556 | mRNA | 1734 | 4952 | 1734 | ID=Msa1463650-mRNA-1;Parent=Msa1463650;Name=Msa1463650-mRNA-1;_AED=0.03;_eAED=0.03;_QI=75|1|1|1|1|1|4|219|77 |
| tig0043556 | exon | 1734 | 2006 | 1734 | ID=Msa1463650-mRNA-1:exon:24144;Parent=Msa1463650-mRNA-1 |
| tig0043556 | exon | 3148 | 3229 | 3148 | ID=Msa1463650-mRNA-1:exon:24143;Parent=Msa1463650-mRNA-1 |
| tig0043556 | exon | 3310 | 3398 | 3310 | ID=Msa1463650-mRNA-1:exon:24142;Parent=Msa1463650-mRNA-1 |
| tig0043556 | exon | 4869 | 4952 | 4869 | ID=Msa1463650-mRNA-1:exon:24141;Parent=Msa1463650-mRNA-1 |
| tig0043556 | five_prime_UTR | 4878 | 4952 | 4878 | ID=Msa1463650-mRNA-1:five_prime_utr;Parent=Msa1463650-mRNA-1 |
| tig0043556 | CDS | 4869 | 4877 | 4869 | ID=Msa1463650-mRNA-1:cds;Parent=Msa1463650-mRNA-1 |
| tig0043556 | CDS | 3310 | 3398 | 3310 | ID=Msa1463650-mRNA-1:cds;Parent=Msa1463650-mRNA-1 |
| tig0043556 | CDS | 3148 | 3229 | 3148 | ID=Msa1463650-mRNA-1:cds;Parent=Msa1463650-mRNA-1 |
| tig0043556 | CDS | 1953 | 2006 | 1953 | ID=Msa1463650-mRNA-1:cds;Parent=Msa1463650-mRNA-1 |
| tig0043556 | three_prime_UTR | 1734 | 1952 | 1734 | ID=Msa1463650-mRNA-1:three_prime_utr;Parent=Msa1463650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
