AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1197820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1197820 MtrunA17_Chr8g0366891 100.000 132 0 0 1 132 1 132 2.15e-94 268
Msa1197820 MtrunA17_Chr5g0411511 63.934 122 38 4 1 117 4 124 6.41e-40 130
Msa1197820 MtrunA17_Chr5g0428121 34.400 125 66 3 1 116 1 118 3.78e-13 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1197820 AT5G65660.1 59.559 136 50 3 1 131 1 136 7.69e-50 155

Find 60 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTATTCAATCCTTGTGTTT+TGG 0.246615 8_1:+48955073 Msa1197820:three_prime_UTR
ATATATTAAAGAGATCTTAA+TGG 0.274919 8_1:+48955110 Msa1197820:three_prime_UTR
GAGTATGGAAATGGAAAATT+TGG 0.282648 8_1:-48953949 None:intergenic
CCGTCCCTTGGTTTCCCTTT+GGG 0.290761 8_1:+48954193 Msa1197820:CDS
ATTAGGAATTGAAGCAAAAC+AGG 0.315810 8_1:+48954618 Msa1197820:intron
GGGAAGGAAAGAATCACTTT+TGG 0.330053 8_1:-48954036 None:intergenic
TCCTCTCTTGTTGCTACCAT+TGG 0.336730 8_1:+48954257 Msa1197820:CDS
ACCGTCCCTTGGTTTCCCTT+TGG 0.340168 8_1:+48954192 Msa1197820:CDS
CTCTTACACTCATGTGTTTG+AGG 0.371224 8_1:-48954082 None:intergenic
TGAGGTATTTATATAGAGTA+TGG 0.382660 8_1:-48953964 None:intergenic
TGTGTTTGTGTTGGTGGTGA+TGG 0.393775 8_1:-48953987 None:intergenic
AATGTGTGTGTTTGTGTTGG+TGG 0.400725 8_1:-48953993 None:intergenic
AAATGAATAGGTTAGGTAGA+AGG 0.409878 8_1:+48955018 Msa1197820:three_prime_UTR
CCAAAACACAAGGATTGAAT+AGG 0.415934 8_1:-48955073 None:intergenic
CCTCTCTTGTTGCTACCATT+GGG 0.420887 8_1:+48954258 Msa1197820:CDS
CATGGCATCGCTATGAACTT+TGG 0.435341 8_1:-48954680 None:intergenic
ATTTATATAGAGTATGGAAA+TGG 0.452632 8_1:-48953958 None:intergenic
GACAATTTGACACAACAAAA+CGG 0.462162 8_1:-48954854 None:intergenic
CACAAAGAAGGAAGGAAGGA+AGG 0.469797 8_1:-48954057 None:intergenic
CTCAAACACATGAGTGTAAG+AGG 0.472452 8_1:+48954083 Msa1197820:five_prime_UTR
TGCGGTGGCTTTAGCGGTGG+CGG 0.472991 8_1:-48954755 None:intergenic
TTATTTGATGAATGACTTTG+AGG 0.473837 8_1:-48954322 None:intergenic
ATTTACAAATACAAAGGAAT+CGG 0.482953 8_1:-48954782 None:intergenic
TATTTGATGAATGACTTTGA+GGG 0.484211 8_1:-48954321 None:intergenic
AGAAGGAAGGAAGGAAGGGA+AGG 0.488508 8_1:-48954052 None:intergenic
GGTAGTTGCGGTGGCTTTAG+CGG 0.501118 8_1:-48954761 None:intergenic
GGGAAGGTGTAAGATGATCT+TGG 0.514506 8_1:-48954153 None:intergenic
GGTGGCTTTAGCGGTGGCGG+CGG 0.535647 8_1:-48954752 None:intergenic
TATAATGTGTGTGTTTGTGT+TGG 0.535993 8_1:-48953996 None:intergenic
TTGAATAGGATGAAATGTAA+TGG 0.536402 8_1:-48955059 None:intergenic
AACTTTGGCACATCATCCCC+TGG 0.540201 8_1:-48954665 None:intergenic
GATGCATCTAGACCGTCCCT+TGG 0.550142 8_1:+48954181 Msa1197820:CDS
TTGTGTTGGTGGTGATGGTG+AGG 0.560627 8_1:-48953982 None:intergenic
ACAAAGAAGGAAGGAAGGAA+GGG 0.561216 8_1:-48954056 None:intergenic
AGAGAAGGGCAGTACCCAAA+GGG 0.563187 8_1:-48954207 None:intergenic
GTGTTTGAGGAACACAAAGA+AGG 0.581852 8_1:-48954069 None:intergenic
GGAACACAAAGAAGGAAGGA+AGG 0.583717 8_1:-48954061 None:intergenic
TACAAAGGAATCGGTAGTTG+CGG 0.587455 8_1:-48954773 None:intergenic
CTAATTATTTACAAATACAA+AGG 0.591127 8_1:-48954788 None:intergenic
CGTGATGGTTGACACGGACA+TGG 0.592416 8_1:-48954698 None:intergenic
CTAGATGCATCCACGTGGGA+AGG 0.595090 8_1:-48954169 None:intergenic
TCCGTGTCAACCATCACGGC+CGG 0.605730 8_1:+48954703 Msa1197820:CDS
TCCGGCCGTGATGGTTGACA+CGG 0.606741 8_1:-48954704 None:intergenic
AAGAGAAGGGCAGTACCCAA+AGG 0.608211 8_1:-48954208 None:intergenic
AAAGGAATCGGTAGTTGCGG+TGG 0.608462 8_1:-48954770 None:intergenic
TTAGGAATTGAAGCAAAACA+GGG 0.610121 8_1:+48954619 Msa1197820:intron
CAGTACCCAAAGGGAAACCA+AGG 0.610893 8_1:-48954198 None:intergenic
AGGAACGAACTTTGTCCCAA+TGG 0.612669 8_1:-48954273 None:intergenic
AGTTGCGGTGGCTTTAGCGG+TGG 0.620561 8_1:-48954758 None:intergenic
TTGAGGAACACAAAGAAGGA+AGG 0.638264 8_1:-48954065 None:intergenic
CATGTCCGTGTCAACCATCA+CGG 0.638623 8_1:+48954699 Msa1197820:CDS
CCCAATGGTAGCAACAAGAG+AGG 0.649699 8_1:-48954258 None:intergenic
CCCAAAGGGAAACCAAGGGA+CGG 0.672560 8_1:-48954193 None:intergenic
ACATTACATACCAAAACACA+AGG 0.682439 8_1:-48955083 None:intergenic
TCATCTTACACCTTCCCACG+TGG 0.683852 8_1:+48954159 Msa1197820:CDS
ACGGTCTAGATGCATCCACG+TGG 0.687848 8_1:-48954174 None:intergenic
AGTACCCAAAGGGAAACCAA+GGG 0.712160 8_1:-48954197 None:intergenic
CGGTCTAGATGCATCCACGT+GGG 0.718155 8_1:-48954173 None:intergenic
TAGGAATTGAAGCAAAACAG+GGG 0.718696 8_1:+48954620 Msa1197820:intron
AATTTGACACAACAAAACGG+TGG 0.728129 8_1:-48954851 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAATTATTTACAAATACAA+AGG - chr8_1:48954791-48954810 None:intergenic 15.0%
!!! AATTGTTTTTGAGTAAAAAA+TGG + chr8_1:48954909-48954928 Msa1197820:three_prime_UTR 15.0%
!! ATATATTAAAGAGATCTTAA+TGG + chr8_1:48955110-48955129 Msa1197820:three_prime_UTR 15.0%
!! CTAATTATTTACAAATACAA+AGG - chr8_1:48954791-48954810 None:intergenic 15.0%
!!! AATTGTTTTTGAGTAAAAAA+TGG + chr8_1:48954909-48954928 Msa1197820:three_prime_UTR 15.0%
!! ATATATTAAAGAGATCTTAA+TGG + chr8_1:48955110-48955129 Msa1197820:three_prime_UTR 15.0%
!! ATTTATATAGAGTATGGAAA+TGG - chr8_1:48953961-48953980 None:intergenic 20.0%
!! AGAAAAAAGTCTAAGAATAA+TGG - chr8_1:48954412-48954431 None:intergenic 20.0%
!! ATTTACAAATACAAAGGAAT+CGG - chr8_1:48954785-48954804 None:intergenic 20.0%
!!! TATGTTTTTATCATTTTCCT+AGG + chr8_1:48954885-48954904 Msa1197820:three_prime_UTR 20.0%
!! ATTTATATAGAGTATGGAAA+TGG - chr8_1:48953961-48953980 None:intergenic 20.0%
!! AGAAAAAAGTCTAAGAATAA+TGG - chr8_1:48954412-48954431 None:intergenic 20.0%
!! ATTTACAAATACAAAGGAAT+CGG - chr8_1:48954785-48954804 None:intergenic 20.0%
!!! TATGTTTTTATCATTTTCCT+AGG + chr8_1:48954885-48954904 Msa1197820:three_prime_UTR 20.0%
!! TGAGGTATTTATATAGAGTA+TGG - chr8_1:48953967-48953986 None:intergenic 25.0%
! ACAACAAAAACAAAACACAA+TGG + chr8_1:48954126-48954145 Msa1197820:exon 25.0%
! AAAAATGATGATCAAGAGAA+GGG - chr8_1:48954224-48954243 None:intergenic 25.0%
! TAAAAATGATGATCAAGAGA+AGG - chr8_1:48954225-48954244 None:intergenic 25.0%
! TATTTGATGAATGACTTTGA+GGG - chr8_1:48954324-48954343 None:intergenic 25.0%
! TTATTTGATGAATGACTTTG+AGG - chr8_1:48954325-48954344 None:intergenic 25.0%
! AATGAGTGTGAAAATTAAGA+GGG - chr8_1:48954382-48954401 None:intergenic 25.0%
! AAATGAGTGTGAAAATTAAG+AGG - chr8_1:48954383-48954402 None:intergenic 25.0%
!!! TAGTTTCTAATGTTGTTTCA+TGG + chr8_1:48954591-48954610 Msa1197820:intron 25.0%
! TTACTCAAAAACAATTTCCT+AGG - chr8_1:48954905-48954924 None:intergenic 25.0%
!!! TGTTTTTGAGTAAAAAATGG+TGG + chr8_1:48954912-48954931 Msa1197820:three_prime_UTR 25.0%
!!! CATGTTTTTTGTGAAGAAAA+TGG + chr8_1:48954938-48954957 Msa1197820:three_prime_UTR 25.0%
! ATGAGCAACAAAAAATGAAT+AGG + chr8_1:48955006-48955025 Msa1197820:three_prime_UTR 25.0%
! CAACAAAAAATGAATAGGTT+AGG + chr8_1:48955011-48955030 Msa1197820:three_prime_UTR 25.0%
! TTGAATAGGATGAAATGTAA+TGG - chr8_1:48955062-48955081 None:intergenic 25.0%
!!! ATTTTAGTTTCAGCTCTAAA+TGG + chr8_1:48955140-48955159 Msa1197820:three_prime_UTR 25.0%
!! TGAGGTATTTATATAGAGTA+TGG - chr8_1:48953967-48953986 None:intergenic 25.0%
! ACAACAAAAACAAAACACAA+TGG + chr8_1:48954126-48954145 Msa1197820:exon 25.0%
! AAAAATGATGATCAAGAGAA+GGG - chr8_1:48954224-48954243 None:intergenic 25.0%
! TAAAAATGATGATCAAGAGA+AGG - chr8_1:48954225-48954244 None:intergenic 25.0%
! TATTTGATGAATGACTTTGA+GGG - chr8_1:48954324-48954343 None:intergenic 25.0%
! TTATTTGATGAATGACTTTG+AGG - chr8_1:48954325-48954344 None:intergenic 25.0%
! AATGAGTGTGAAAATTAAGA+GGG - chr8_1:48954382-48954401 None:intergenic 25.0%
! AAATGAGTGTGAAAATTAAG+AGG - chr8_1:48954383-48954402 None:intergenic 25.0%
!!! TAGTTTCTAATGTTGTTTCA+TGG + chr8_1:48954591-48954610 Msa1197820:intron 25.0%
! TTACTCAAAAACAATTTCCT+AGG - chr8_1:48954905-48954924 None:intergenic 25.0%
!!! TGTTTTTGAGTAAAAAATGG+TGG + chr8_1:48954912-48954931 Msa1197820:three_prime_UTR 25.0%
!!! CATGTTTTTTGTGAAGAAAA+TGG + chr8_1:48954938-48954957 Msa1197820:three_prime_UTR 25.0%
! ATGAGCAACAAAAAATGAAT+AGG + chr8_1:48955006-48955025 Msa1197820:three_prime_UTR 25.0%
! CAACAAAAAATGAATAGGTT+AGG + chr8_1:48955011-48955030 Msa1197820:three_prime_UTR 25.0%
! TTGAATAGGATGAAATGTAA+TGG - chr8_1:48955062-48955081 None:intergenic 25.0%
!!! ATTTTAGTTTCAGCTCTAAA+TGG + chr8_1:48955140-48955159 Msa1197820:three_prime_UTR 25.0%
GAGTATGGAAATGGAAAATT+TGG - chr8_1:48953952-48953971 None:intergenic 30.0%
TATAATGTGTGTGTTTGTGT+TGG - chr8_1:48953999-48954018 None:intergenic 30.0%
!!! TTTTGGAATGTGAATTTGGA+GGG - chr8_1:48954022-48954041 None:intergenic 30.0%
!!! TCACTTTTGGAATGTGAATT+TGG - chr8_1:48954026-48954045 None:intergenic 30.0%
!!! ATCATCATTTTTAGCTTGAG+TGG + chr8_1:48954232-48954251 Msa1197820:CDS 30.0%
!! TGTTGTTTCATGGATTGATT+AGG + chr8_1:48954601-48954620 Msa1197820:intron 30.0%
ATTAGGAATTGAAGCAAAAC+AGG + chr8_1:48954618-48954637 Msa1197820:intron 30.0%
TTAGGAATTGAAGCAAAACA+GGG + chr8_1:48954619-48954638 Msa1197820:intron 30.0%
GACAATTTGACACAACAAAA+CGG - chr8_1:48954857-48954876 None:intergenic 30.0%
!!! GTTTTTTGTGAAGAAAATGG+TGG + chr8_1:48954941-48954960 Msa1197820:three_prime_UTR 30.0%
AAATGAATAGGTTAGGTAGA+AGG + chr8_1:48955018-48955037 Msa1197820:three_prime_UTR 30.0%
ACATTACATACCAAAACACA+AGG - chr8_1:48955086-48955105 None:intergenic 30.0%
GAGTATGGAAATGGAAAATT+TGG - chr8_1:48953952-48953971 None:intergenic 30.0%
TATAATGTGTGTGTTTGTGT+TGG - chr8_1:48953999-48954018 None:intergenic 30.0%
!!! TTTTGGAATGTGAATTTGGA+GGG - chr8_1:48954022-48954041 None:intergenic 30.0%
!!! TCACTTTTGGAATGTGAATT+TGG - chr8_1:48954026-48954045 None:intergenic 30.0%
!!! ATCATCATTTTTAGCTTGAG+TGG + chr8_1:48954232-48954251 Msa1197820:CDS 30.0%
!! TGTTGTTTCATGGATTGATT+AGG + chr8_1:48954601-48954620 Msa1197820:intron 30.0%
ATTAGGAATTGAAGCAAAAC+AGG + chr8_1:48954618-48954637 Msa1197820:intron 30.0%
TTAGGAATTGAAGCAAAACA+GGG + chr8_1:48954619-48954638 Msa1197820:intron 30.0%
GACAATTTGACACAACAAAA+CGG - chr8_1:48954857-48954876 None:intergenic 30.0%
!!! GTTTTTTGTGAAGAAAATGG+TGG + chr8_1:48954941-48954960 Msa1197820:three_prime_UTR 30.0%
AAATGAATAGGTTAGGTAGA+AGG + chr8_1:48955018-48955037 Msa1197820:three_prime_UTR 30.0%
ACATTACATACCAAAACACA+AGG - chr8_1:48955086-48955105 None:intergenic 30.0%
!!! CTTTTGGAATGTGAATTTGG+AGG - chr8_1:48954023-48954042 None:intergenic 35.0%
ATCTGAAAAAGATTGGCGTA+AGG - chr8_1:48954296-48954315 None:intergenic 35.0%
GGTCAGAATCTGAAAAAGAT+TGG - chr8_1:48954303-48954322 None:intergenic 35.0%
! AGAGGGTTGATTAATACGTA+CGG - chr8_1:48954365-48954384 None:intergenic 35.0%
AATCGTCTGCATTTCTTACA+CGG + chr8_1:48954443-48954462 Msa1197820:intron 35.0%
TAGGAATTGAAGCAAAACAG+GGG + chr8_1:48954620-48954639 Msa1197820:intron 35.0%
! ACAGTCACAACAATGTTTTC+CGG - chr8_1:48954725-48954744 None:intergenic 35.0%
AATTTGACACAACAAAACGG+TGG - chr8_1:48954854-48954873 None:intergenic 35.0%
CCAAAACACAAGGATTGAAT+AGG - chr8_1:48955076-48955095 None:intergenic 35.0%
! CCTATTCAATCCTTGTGTTT+TGG + chr8_1:48955073-48955092 Msa1197820:three_prime_UTR 35.0%
!!! CTTTTGGAATGTGAATTTGG+AGG - chr8_1:48954023-48954042 None:intergenic 35.0%
ATCTGAAAAAGATTGGCGTA+AGG - chr8_1:48954296-48954315 None:intergenic 35.0%
GGTCAGAATCTGAAAAAGAT+TGG - chr8_1:48954303-48954322 None:intergenic 35.0%
! AGAGGGTTGATTAATACGTA+CGG - chr8_1:48954365-48954384 None:intergenic 35.0%
AATCGTCTGCATTTCTTACA+CGG + chr8_1:48954443-48954462 Msa1197820:intron 35.0%
TAGGAATTGAAGCAAAACAG+GGG + chr8_1:48954620-48954639 Msa1197820:intron 35.0%
! ACAGTCACAACAATGTTTTC+CGG - chr8_1:48954725-48954744 None:intergenic 35.0%
AATTTGACACAACAAAACGG+TGG - chr8_1:48954854-48954873 None:intergenic 35.0%
CCAAAACACAAGGATTGAAT+AGG - chr8_1:48955076-48955095 None:intergenic 35.0%
! CCTATTCAATCCTTGTGTTT+TGG + chr8_1:48955073-48955092 Msa1197820:three_prime_UTR 35.0%
AATGTGTGTGTTTGTGTTGG+TGG - chr8_1:48953996-48954015 None:intergenic 40.0%
! GGGAAGGAAAGAATCACTTT+TGG - chr8_1:48954039-48954058 None:intergenic 40.0%
ACAAAGAAGGAAGGAAGGAA+GGG - chr8_1:48954059-48954078 None:intergenic 40.0%
TTGAGGAACACAAAGAAGGA+AGG - chr8_1:48954068-48954087 None:intergenic 40.0%
GTGTTTGAGGAACACAAAGA+AGG - chr8_1:48954072-48954091 None:intergenic 40.0%
CTCTTACACTCATGTGTTTG+AGG - chr8_1:48954085-48954104 None:intergenic 40.0%
CTCAAACACATGAGTGTAAG+AGG + chr8_1:48954083-48954102 Msa1197820:five_prime_UTR 40.0%
TCAACACACTGGTGTAACAT+CGG - chr8_1:48954515-48954534 None:intergenic 40.0%
AATCCTTTGCATCAACACAC+TGG - chr8_1:48954526-48954545 None:intergenic 40.0%
!! AGTTTTTCAGTGATGATGCC+AGG + chr8_1:48954647-48954666 Msa1197820:CDS 40.0%
!! GTTTTTCAGTGATGATGCCA+GGG + chr8_1:48954648-48954667 Msa1197820:CDS 40.0%
!! TTTTTCAGTGATGATGCCAG+GGG + chr8_1:48954649-48954668 Msa1197820:CDS 40.0%
TACAAAGGAATCGGTAGTTG+CGG - chr8_1:48954776-48954795 None:intergenic 40.0%
AATGTGTGTGTTTGTGTTGG+TGG - chr8_1:48953996-48954015 None:intergenic 40.0%
! GGGAAGGAAAGAATCACTTT+TGG - chr8_1:48954039-48954058 None:intergenic 40.0%
ACAAAGAAGGAAGGAAGGAA+GGG - chr8_1:48954059-48954078 None:intergenic 40.0%
TTGAGGAACACAAAGAAGGA+AGG - chr8_1:48954068-48954087 None:intergenic 40.0%
GTGTTTGAGGAACACAAAGA+AGG - chr8_1:48954072-48954091 None:intergenic 40.0%
CTCTTACACTCATGTGTTTG+AGG - chr8_1:48954085-48954104 None:intergenic 40.0%
CTCAAACACATGAGTGTAAG+AGG + chr8_1:48954083-48954102 Msa1197820:five_prime_UTR 40.0%
TCAACACACTGGTGTAACAT+CGG - chr8_1:48954515-48954534 None:intergenic 40.0%
AATCCTTTGCATCAACACAC+TGG - chr8_1:48954526-48954545 None:intergenic 40.0%
!! AGTTTTTCAGTGATGATGCC+AGG + chr8_1:48954647-48954666 Msa1197820:CDS 40.0%
!! GTTTTTCAGTGATGATGCCA+GGG + chr8_1:48954648-48954667 Msa1197820:CDS 40.0%
!! TTTTTCAGTGATGATGCCAG+GGG + chr8_1:48954649-48954668 Msa1197820:CDS 40.0%
TACAAAGGAATCGGTAGTTG+CGG - chr8_1:48954776-48954795 None:intergenic 40.0%
!! TGTGTTTGTGTTGGTGGTGA+TGG - chr8_1:48953990-48954009 None:intergenic 45.0%
CACAAAGAAGGAAGGAAGGA+AGG - chr8_1:48954060-48954079 None:intergenic 45.0%
GGAACACAAAGAAGGAAGGA+AGG - chr8_1:48954064-48954083 None:intergenic 45.0%
! GGGAAGGTGTAAGATGATCT+TGG - chr8_1:48954156-48954175 None:intergenic 45.0%
AGTACCCAAAGGGAAACCAA+GGG - chr8_1:48954200-48954219 None:intergenic 45.0%
TCCTCTCTTGTTGCTACCAT+TGG + chr8_1:48954257-48954276 Msa1197820:CDS 45.0%
CCTCTCTTGTTGCTACCATT+GGG + chr8_1:48954258-48954277 Msa1197820:CDS 45.0%
AGGAACGAACTTTGTCCCAA+TGG - chr8_1:48954276-48954295 None:intergenic 45.0%
! GGGTTGATTAATACGTACGG+TGG - chr8_1:48954362-48954381 None:intergenic 45.0%
! ACACCAGTGTGTTGATGCAA+AGG + chr8_1:48954520-48954539 Msa1197820:intron 45.0%
CATGGCATCGCTATGAACTT+TGG - chr8_1:48954683-48954702 None:intergenic 45.0%
!! TGTGTTTGTGTTGGTGGTGA+TGG - chr8_1:48953990-48954009 None:intergenic 45.0%
CACAAAGAAGGAAGGAAGGA+AGG - chr8_1:48954060-48954079 None:intergenic 45.0%
GGAACACAAAGAAGGAAGGA+AGG - chr8_1:48954064-48954083 None:intergenic 45.0%
! GGGAAGGTGTAAGATGATCT+TGG - chr8_1:48954156-48954175 None:intergenic 45.0%
AGTACCCAAAGGGAAACCAA+GGG - chr8_1:48954200-48954219 None:intergenic 45.0%
TCCTCTCTTGTTGCTACCAT+TGG + chr8_1:48954257-48954276 Msa1197820:CDS 45.0%
CCTCTCTTGTTGCTACCATT+GGG + chr8_1:48954258-48954277 Msa1197820:CDS 45.0%
AGGAACGAACTTTGTCCCAA+TGG - chr8_1:48954276-48954295 None:intergenic 45.0%
! GGGTTGATTAATACGTACGG+TGG - chr8_1:48954362-48954381 None:intergenic 45.0%
! ACACCAGTGTGTTGATGCAA+AGG + chr8_1:48954520-48954539 Msa1197820:intron 45.0%
CATGGCATCGCTATGAACTT+TGG - chr8_1:48954683-48954702 None:intergenic 45.0%
!! TTGTGTTGGTGGTGATGGTG+AGG - chr8_1:48953985-48954004 None:intergenic 50.0%
AGAAGGAAGGAAGGAAGGGA+AGG - chr8_1:48954055-48954074 None:intergenic 50.0%
TCATCTTACACCTTCCCACG+TGG + chr8_1:48954159-48954178 Msa1197820:CDS 50.0%
CAGTACCCAAAGGGAAACCA+AGG - chr8_1:48954201-48954220 None:intergenic 50.0%
AGAGAAGGGCAGTACCCAAA+GGG - chr8_1:48954210-48954229 None:intergenic 50.0%
AAGAGAAGGGCAGTACCCAA+AGG - chr8_1:48954211-48954230 None:intergenic 50.0%
CCCAATGGTAGCAACAAGAG+AGG - chr8_1:48954261-48954280 None:intergenic 50.0%
AACTTTGGCACATCATCCCC+TGG - chr8_1:48954668-48954687 None:intergenic 50.0%
CATGTCCGTGTCAACCATCA+CGG + chr8_1:48954699-48954718 Msa1197820:CDS 50.0%
! ACAATGTTTTCCGGCCGTGA+TGG - chr8_1:48954716-48954735 None:intergenic 50.0%
AAAGGAATCGGTAGTTGCGG+TGG - chr8_1:48954773-48954792 None:intergenic 50.0%
!! TTGTGTTGGTGGTGATGGTG+AGG - chr8_1:48953985-48954004 None:intergenic 50.0%
AGAAGGAAGGAAGGAAGGGA+AGG - chr8_1:48954055-48954074 None:intergenic 50.0%
TCATCTTACACCTTCCCACG+TGG + chr8_1:48954159-48954178 Msa1197820:CDS 50.0%
CAGTACCCAAAGGGAAACCA+AGG - chr8_1:48954201-48954220 None:intergenic 50.0%
AGAGAAGGGCAGTACCCAAA+GGG - chr8_1:48954210-48954229 None:intergenic 50.0%
AAGAGAAGGGCAGTACCCAA+AGG - chr8_1:48954211-48954230 None:intergenic 50.0%
CCCAATGGTAGCAACAAGAG+AGG - chr8_1:48954261-48954280 None:intergenic 50.0%
AACTTTGGCACATCATCCCC+TGG - chr8_1:48954668-48954687 None:intergenic 50.0%
CATGTCCGTGTCAACCATCA+CGG + chr8_1:48954699-48954718 Msa1197820:CDS 50.0%
! ACAATGTTTTCCGGCCGTGA+TGG - chr8_1:48954716-48954735 None:intergenic 50.0%
AAAGGAATCGGTAGTTGCGG+TGG - chr8_1:48954773-48954792 None:intergenic 50.0%
CTAGATGCATCCACGTGGGA+AGG - chr8_1:48954172-48954191 None:intergenic 55.0%
CGGTCTAGATGCATCCACGT+GGG - chr8_1:48954176-48954195 None:intergenic 55.0%
ACGGTCTAGATGCATCCACG+TGG - chr8_1:48954177-48954196 None:intergenic 55.0%
GATGCATCTAGACCGTCCCT+TGG + chr8_1:48954181-48954200 Msa1197820:CDS 55.0%
ACCGTCCCTTGGTTTCCCTT+TGG + chr8_1:48954192-48954211 Msa1197820:CDS 55.0%
CCCAAAGGGAAACCAAGGGA+CGG - chr8_1:48954196-48954215 None:intergenic 55.0%
CCGTCCCTTGGTTTCCCTTT+GGG + chr8_1:48954193-48954212 Msa1197820:CDS 55.0%
CGTGATGGTTGACACGGACA+TGG - chr8_1:48954701-48954720 None:intergenic 55.0%
!! GGTAGTTGCGGTGGCTTTAG+CGG - chr8_1:48954764-48954783 None:intergenic 55.0%
CTAGATGCATCCACGTGGGA+AGG - chr8_1:48954172-48954191 None:intergenic 55.0%
CGGTCTAGATGCATCCACGT+GGG - chr8_1:48954176-48954195 None:intergenic 55.0%
ACGGTCTAGATGCATCCACG+TGG - chr8_1:48954177-48954196 None:intergenic 55.0%
GATGCATCTAGACCGTCCCT+TGG + chr8_1:48954181-48954200 Msa1197820:CDS 55.0%
ACCGTCCCTTGGTTTCCCTT+TGG + chr8_1:48954192-48954211 Msa1197820:CDS 55.0%
CCCAAAGGGAAACCAAGGGA+CGG - chr8_1:48954196-48954215 None:intergenic 55.0%
CCGTCCCTTGGTTTCCCTTT+GGG + chr8_1:48954193-48954212 Msa1197820:CDS 55.0%
CGTGATGGTTGACACGGACA+TGG - chr8_1:48954701-48954720 None:intergenic 55.0%
!! GGTAGTTGCGGTGGCTTTAG+CGG - chr8_1:48954764-48954783 None:intergenic 55.0%
TCCGTGTCAACCATCACGGC+CGG + chr8_1:48954703-48954722 Msa1197820:CDS 60.0%
TCCGGCCGTGATGGTTGACA+CGG - chr8_1:48954707-48954726 None:intergenic 60.0%
!! AGTTGCGGTGGCTTTAGCGG+TGG - chr8_1:48954761-48954780 None:intergenic 60.0%
TCCGTGTCAACCATCACGGC+CGG + chr8_1:48954703-48954722 Msa1197820:CDS 60.0%
TCCGGCCGTGATGGTTGACA+CGG - chr8_1:48954707-48954726 None:intergenic 60.0%
!! AGTTGCGGTGGCTTTAGCGG+TGG - chr8_1:48954761-48954780 None:intergenic 60.0%
!! TGCGGTGGCTTTAGCGGTGG+CGG - chr8_1:48954758-48954777 None:intergenic 65.0%
!! TGCGGTGGCTTTAGCGGTGG+CGG - chr8_1:48954758-48954777 None:intergenic 65.0%
!! GGTGGCTTTAGCGGTGGCGG+CGG - chr8_1:48954755-48954774 None:intergenic 70.0%
!! GGTGGCTTTAGCGGTGGCGG+CGG - chr8_1:48954755-48954774 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 48953944 48955197 48953944 ID=Msa1197820;Name=Msa1197820
chr8_1 mRNA 48953944 48955197 48953944 ID=Msa1197820-mRNA-1;Parent=Msa1197820;Name=Msa1197820-mRNA-1;_AED=0.00;_eAED=0.00;_QI=201|1|1|1|1|1|2|395|132
chr8_1 exon 48953944 48954363 48953944 ID=Msa1197820-mRNA-1:exon:15356;Parent=Msa1197820-mRNA-1
chr8_1 exon 48954623 48955197 48954623 ID=Msa1197820-mRNA-1:exon:15357;Parent=Msa1197820-mRNA-1
chr8_1 five_prime_UTR 48953944 48954144 48953944 ID=Msa1197820-mRNA-1:five_prime_utr;Parent=Msa1197820-mRNA-1
chr8_1 CDS 48954145 48954363 48954145 ID=Msa1197820-mRNA-1:cds;Parent=Msa1197820-mRNA-1
chr8_1 CDS 48954623 48954802 48954623 ID=Msa1197820-mRNA-1:cds;Parent=Msa1197820-mRNA-1
chr8_1 three_prime_UTR 48954803 48955197 48954803 ID=Msa1197820-mRNA-1:three_prime_utr;Parent=Msa1197820-mRNA-1
Gene Sequence

>Msa1197820

ATGGAGAGCCAAGATCATCTTACACCTTCCCACGTGGATGCATCTAGACCGTCCCTTGGTTTCCCTTTGGGTACTGCCCTTCTCTTGATCATCATTTTTAGCTTGAGTGGTATCCTCTCTTGTTGCTACCATTGGGACAAAGTTCGTTCCTTACGCCAATCTTTTTCAGATTCTGACCCTCAAAGTCATTCATCAAATAAATCTAAACTTTACTCCACCGAATTGAAGCAAAACAGGGGAGAAAGTTTTTCAGTGATGATGCCAGGGGATGATGTGCCAAAGTTCATAGCGATGCCATGTCCGTGTCAACCATCACGGCCGGAAAACATTGTTGTGACTGTCGAGAAGCCGCCGCCACCGCTAAAGCCACCGCAACTACCGATTCCTTTGTATTTGTAA

Protein sequence

>Msa1197820

MESQDHLTPSHVDASRPSLGFPLGTALLLIIIFSLSGILSCCYHWDKVRSLRQSFSDSDPQSHSSNKSKLYSTELKQNRGESFSVMMPGDDVPKFIAMPCPCQPSRPENIVVTVEKPPPPLKPPQLPIPLYL*