AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1224430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1224430 MtrunA17_Chr4g0076351 95.439 285 6 2 1 285 1 278 0.0 560
Msa1224430 MtrunA17_Chr2g0290501 71.479 284 69 5 4 284 59 333 1.75e-146 414
Msa1224430 MtrunA17_Chr3g0102431 57.509 273 107 3 11 283 23 286 8.26e-110 319
Msa1224430 MtrunA17_Chr8g0383231 56.107 262 105 3 14 275 19 270 1.79e-101 298
Msa1224430 MtrunA17_Chr3g0120821 52.852 263 113 4 13 275 80 331 1.68e-99 295
Msa1224430 MtrunA17_Chr4g0055811 45.788 273 140 3 13 285 91 355 4.73e-82 251
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1224430 AT5G47650.5 55.709 289 111 5 1 283 1 278 4.18e-110 320
Msa1224430 AT5G47650.3 55.709 289 111 5 1 283 1 278 4.18e-110 320
Msa1224430 AT5G47650.1 55.709 289 111 5 1 283 1 278 4.18e-110 320
Msa1224430 AT5G47650.4 56.679 277 109 4 7 283 59 324 3.58e-109 319
Msa1224430 AT5G47650.2 56.679 277 109 4 7 283 60 325 4.31e-109 319
Msa1224430 AT4G25434.10 53.759 266 110 5 12 275 18 272 3.11e-95 282
Msa1224430 AT4G25434.8 50.523 287 114 6 12 275 18 299 2.80e-93 278
Msa1224430 AT4G25434.1 52.632 266 108 6 12 275 18 267 3.20e-90 269
Msa1224430 AT4G12720.2 50.000 274 125 5 10 281 7 270 1.29e-88 265
Msa1224430 AT4G12720.3 50.000 274 125 5 10 281 7 270 1.29e-88 265
Msa1224430 AT4G12720.1 50.000 274 125 5 10 281 7 270 1.29e-88 265
Msa1224430 AT4G25434.2 49.477 287 112 7 12 275 18 294 2.88e-88 265
Msa1224430 AT4G25434.7 58.937 207 77 3 12 218 18 216 8.43e-83 248
Msa1224430 AT5G47240.1 47.842 278 129 6 1 275 86 350 8.10e-82 251
Msa1224430 AT4G25434.6 54.825 228 80 4 12 218 18 243 3.93e-81 245
Msa1224430 AT2G04450.1 48.529 272 127 6 7 275 4 265 1.06e-80 245
Msa1224430 AT4G12720.4 43.631 314 125 6 10 281 7 310 1.26e-80 246
Msa1224430 AT2G04430.2 48.193 249 120 3 10 255 7 249 9.16e-78 238
Msa1224430 AT4G25434.9 57.488 207 75 4 12 218 18 211 9.87e-78 235
Msa1224430 AT2G04430.1 48.193 249 120 3 10 255 26 268 1.97e-77 238
Msa1224430 AT5G47240.2 43.322 307 129 7 1 275 86 379 1.74e-75 236
Msa1224430 AT4G25434.3 55.122 205 81 3 73 275 32 227 3.23e-75 229
Msa1224430 AT4G25434.5 55.122 205 81 3 73 275 32 227 3.23e-75 229
Msa1224430 AT4G12720.5 53.555 211 88 4 10 218 7 209 5.06e-73 223
Msa1224430 AT4G25434.4 53.659 205 79 4 73 275 32 222 6.09e-70 216
Msa1224430 AT4G25434.13 49.524 210 80 4 89 275 1 207 7.66e-64 200
Msa1224430 AT4G25434.12 55.429 175 70 3 7 181 13 179 4.92e-62 196
Msa1224430 AT4G25434.11 50.510 196 74 4 7 181 13 206 4.09e-60 192
Msa1224430 AT4G12720.6 48.205 195 91 4 89 281 1 187 7.42e-56 179
Msa1224430 AT2G04440.1 43.269 208 104 3 7 201 4 210 6.42e-48 159

Find 70 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTACAAGCATCAAATATTT+TGG 0.159229 8_1:+89369066 None:intergenic
TTCAAATAAAGATGGCTATT+TGG 0.203005 8_1:+89366961 None:intergenic
AAGATTGATGGACATTATTC+TGG 0.227648 8_1:-89367024 Msa1224430:CDS
ATATGCAGCTCAGCCATTTA+TGG 0.279024 8_1:-89367091 Msa1224430:CDS
TTGTGGAAGTATTAGCATTC+AGG 0.296467 8_1:-89367806 Msa1224430:intron
CGGTGTTATCGTAGAATTAA+TGG 0.299809 8_1:-89369936 Msa1224430:CDS
TTACACCTTCAATTTCTAAC+TGG 0.317897 8_1:-89369874 Msa1224430:CDS
GTGGAAGCAATAAAACAGTT+TGG 0.339576 8_1:-89366780 Msa1224430:three_prime_UTR
GATAAAATTACCTATTCATC+TGG 0.356295 8_1:-89369264 Msa1224430:CDS
ACAATGAATTACTCCTCTTA+AGG 0.361763 8_1:+89366929 None:intergenic
GATAGTAGTTTAGTGTTGTC+TGG 0.366743 8_1:+89366741 None:intergenic
ACTCGGTGTGTGGCATTTGC+AGG 0.374095 8_1:+89369015 None:intergenic
GCCATTTATGGAAAAGTATG+AGG 0.393678 8_1:-89367079 Msa1224430:CDS
TTGTTGTGGGACAAAATTCC+AGG 0.396840 8_1:+89366702 None:intergenic
CAGCTTCTATCTCTACCTCC+TGG 0.398995 8_1:+89367383 None:intergenic
TCCTACCGGAGTTGCTGATC+AGG 0.409277 8_1:-89368098 Msa1224430:intron
TATTATAGTTACAATTCAAT+TGG 0.413564 8_1:+89366848 None:intergenic
AATAAAGATGGCTATTTGGC+TGG 0.419860 8_1:+89366965 None:intergenic
ACAAGGTTGGCCAGATGAAT+AGG 0.422162 8_1:+89369254 None:intergenic
TGGAAGCAATAAAACAGTTT+GGG 0.426111 8_1:-89366779 Msa1224430:three_prime_UTR
TGTAGGGCAAGAAGGGTGTT+TGG 0.427765 8_1:-89369286 Msa1224430:intron
AATATTTGATGCTTGTACAT+TGG 0.428434 8_1:-89369062 Msa1224430:CDS
AGCCATCTTTATTTGAATGC+TGG 0.428650 8_1:-89366955 Msa1224430:CDS
GCCACACACCGAGTGGGTAT+TGG 0.432566 8_1:-89369006 Msa1224430:CDS
AGAGAGGTCAAAGAAGAAAC+AGG 0.434993 8_1:-89367968 Msa1224430:CDS
TGTTTCCAGTTAGAAATTGA+AGG 0.439398 8_1:+89369869 None:intergenic
CATTGTCTTGTAGGGCAAGA+AGG 0.454453 8_1:-89369294 Msa1224430:intron
TTGATCTTCTTCTTCTGTTG+AGG 0.456043 8_1:+89369994 None:intergenic
TCAGATAGACTCGGAATTTG+TGG 0.463019 8_1:-89367823 Msa1224430:intron
ATATACTTGGCAAAGATTGA+TGG 0.464974 8_1:-89367036 Msa1224430:CDS
AAGGTAGTAGAATCCATGAT+AGG 0.468658 8_1:+89369908 None:intergenic
AATTTCTAACTGGAAACAAC+AGG 0.477830 8_1:-89369864 Msa1224430:intron
TGAATGCTGGAGGCCTTAAG+AGG 0.480821 8_1:-89366942 Msa1224430:CDS
AATTAAAGTTTCCACAAGGT+TGG 0.483065 8_1:+89369241 None:intergenic
AACTCCGGTAGGAAATTTCC+AGG 0.487178 8_1:+89368108 None:intergenic
AGTGGGTATTGGAGCGTTTG+TGG 0.488578 8_1:-89368995 Msa1224430:CDS
AGAAATTGAAGGTGTAAGAA+TGG 0.490971 8_1:+89369880 None:intergenic
TGAGCTGCATATTCATCAAA+TGG 0.494421 8_1:+89367102 None:intergenic
ATCAAGGATATGAACATAAG+TGG 0.494948 8_1:-89366799 Msa1224430:three_prime_UTR
ATTAATGGATCACCCTATCA+TGG 0.500732 8_1:-89369921 Msa1224430:CDS
TATATTGCTATTTGCTGCTG+CGG 0.508453 8_1:-89370195 Msa1224430:five_prime_UTR
GTGTGTGGCATTTGCAGGAA+TGG 0.522297 8_1:+89369020 None:intergenic
TATGTCACATATAAAGATCA+AGG 0.525997 8_1:-89366815 Msa1224430:three_prime_UTR
TCCAGGTGTACAAAAGAGAC+AGG 0.526090 8_1:+89366719 None:intergenic
CTCCAGCATTCAAATAAAGA+TGG 0.531291 8_1:+89366953 None:intergenic
AGGTGTAAGAATGGATAAGA+AGG 0.540844 8_1:+89369889 None:intergenic
ATATTGCTATTTGCTGCTGC+GGG 0.542929 8_1:-89370194 Msa1224430:five_prime_UTR
TGCAAATGCCACACACCGAG+TGG 0.544339 8_1:-89369013 Msa1224430:CDS
GTAGAGTAAGACATTGTTGT+GGG 0.545467 8_1:+89366689 None:intergenic
GGTAGAGATAGAAGCTGCAA+AGG 0.549918 8_1:-89367377 Msa1224430:intron
ATTGTCTTGTAGGGCAAGAA+GGG 0.550569 8_1:-89369293 Msa1224430:intron
CATCTTTATTTGAATGCTGG+AGG 0.553074 8_1:-89366952 Msa1224430:CDS
TATTCATCTGGCCAACCTTG+TGG 0.553285 8_1:-89369252 Msa1224430:CDS
TCCAATACCCACTCGGTGTG+TGG 0.564012 8_1:+89369005 None:intergenic
TTGTGCAGCAGCAGTAAGAG+AGG 0.565131 8_1:-89367984 Msa1224430:CDS
AGGTAGTAGAATCCATGATA+GGG 0.567767 8_1:+89369909 None:intergenic
AGGAGTAAGTAATCTCTTTG+CGG 0.575207 8_1:-89367948 Msa1224430:intron
GTACATTAATGACATATACT+TGG 0.579892 8_1:-89367049 Msa1224430:CDS
TTGCTATTTGCTGCTGCGGG+AGG 0.587723 8_1:-89370191 Msa1224430:five_prime_UTR
ACCGCTATATTCATCATCAG+TGG 0.604610 8_1:+89369955 None:intergenic
CATTAATTAAAGTTTCCACA+AGG 0.606195 8_1:+89369237 None:intergenic
GGATCCTGGAAATTTCCTAC+CGG 0.606581 8_1:-89368112 Msa1224430:CDS
ATTTACCTGATCAGCAACTC+CGG 0.611010 8_1:+89368093 None:intergenic
AGTAGAGTAAGACATTGTTG+TGG 0.635377 8_1:+89366688 None:intergenic
CAAACGCTCCAATACCCACT+CGG 0.649930 8_1:+89368998 None:intergenic
ACCTGATCAGCAACTCCGGT+AGG 0.652284 8_1:+89368097 None:intergenic
GCAAATGCCACACACCGAGT+GGG 0.669457 8_1:-89369012 Msa1224430:CDS
ACTTCTCAAAGAATGTCATG+TGG 0.686811 8_1:+89367458 None:intergenic
TGTGGTGAATGATAAACGAG+AGG 0.692588 8_1:-89368977 Msa1224430:intron
TCCACTGATGATGAATATAG+CGG 0.705890 8_1:-89369956 Msa1224430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATTTACTAACTCTAA+TGG - chr8_1:89367048-89367067 Msa1224430:CDS 15.0%
!!! AACTTTCTTATTTTGAAAAT+AGG + chr8_1:89368230-89368249 None:intergenic 15.0%
!! TATTATAGTTACAATTCAAT+TGG + chr8_1:89370029-89370048 None:intergenic 15.0%
!! CTTATCCTTAATCAATTTAA+AGG - chr8_1:89367129-89367148 Msa1224430:intron 20.0%
!! AGTATCCTTTAAATTGATTA+AGG + chr8_1:89367137-89367156 None:intergenic 20.0%
!! GTAGTAATTGAACTAATTAA+GGG - chr8_1:89367283-89367302 Msa1224430:intron 20.0%
!! TCAAAATAAGAAAGTTAACA+AGG - chr8_1:89368234-89368253 Msa1224430:intron 20.0%
!! ATTTCTATTCCCATAATAAA+GGG + chr8_1:89368397-89368416 None:intergenic 20.0%
!! AATTTCTATTCCCATAATAA+AGG + chr8_1:89368398-89368417 None:intergenic 20.0%
!!! AATGTTATTTCTATGTATCA+AGG + chr8_1:89368497-89368516 None:intergenic 20.0%
!! ATCTGAAAATTGAAAAAACT+TGG + chr8_1:89369037-89369056 None:intergenic 20.0%
!!! TAATATTTCATTTTGTGTGT+TGG - chr8_1:89369110-89369129 Msa1224430:intron 20.0%
!! ATAAACCATGATATTGTTAT+TGG + chr8_1:89369233-89369252 None:intergenic 20.0%
!! CAACAACTAAACAATAAAAT+CGG + chr8_1:89369295-89369314 None:intergenic 20.0%
!! TTTAGTTGTTGAAAAAATGT+AGG - chr8_1:89369304-89369323 Msa1224430:intron 20.0%
!! TTGAAATTATGCACTAAATA+AGG - chr8_1:89369534-89369553 Msa1224430:intron 20.0%
!!! TAAGAAATTGTGGTATTTTA+GGG + chr8_1:89369585-89369604 None:intergenic 20.0%
!! AGAATATATGTAAGAAATTG+TGG + chr8_1:89369595-89369614 None:intergenic 20.0%
!!! CAGTAAATTTTAGTATTATG+AGG - chr8_1:89369686-89369705 Msa1224430:intron 20.0%
!! TATTCATTATATATAGCAAC+AGG - chr8_1:89369716-89369735 Msa1224430:intron 20.0%
!! ATTCATTATATATAGCAACA+GGG - chr8_1:89369717-89369736 Msa1224430:intron 20.0%
! TGAAGTTCATGTTATTAGTT+AGG - chr8_1:89367168-89367187 Msa1224430:intron 25.0%
! ATGTTATTAGTTAGGCAATA+TGG - chr8_1:89367176-89367195 Msa1224430:intron 25.0%
! GGTAGTAATTGAACTAATTA+AGG - chr8_1:89367282-89367301 Msa1224430:intron 25.0%
! AATGATATTTATGAGTGAGT+GGG + chr8_1:89367311-89367330 None:intergenic 25.0%
! TAATGATATTTATGAGTGAG+TGG + chr8_1:89367312-89367331 None:intergenic 25.0%
!!! ATAAGTTTTAGATTGAAGGT+GGG + chr8_1:89367341-89367360 None:intergenic 25.0%
!!! GTAGATAAGTTTTAGATTGA+AGG + chr8_1:89367345-89367364 None:intergenic 25.0%
! TTCTTAGATGCTAAATAATC+AGG + chr8_1:89367440-89367459 None:intergenic 25.0%
! ATTCAGAAAGATTAGGAATA+CGG - chr8_1:89367484-89367503 Msa1224430:intron 25.0%
! GATAAAATTACCTATTCATC+TGG - chr8_1:89367610-89367629 Msa1224430:intron 25.0%
! CATTAATTAAAGTTTCCACA+AGG + chr8_1:89367640-89367659 None:intergenic 25.0%
!! TGTACAAGCATCAAATATTT+TGG + chr8_1:89367811-89367830 None:intergenic 25.0%
! AATATTTGATGCTTGTACAT+TGG - chr8_1:89367812-89367831 Msa1224430:CDS 25.0%
! TCCCATATGGTTATATATTT+AGG - chr8_1:89367994-89368013 Msa1224430:CDS 25.0%
! CCCTAAATATATAACCATAT+GGG + chr8_1:89367998-89368017 None:intergenic 25.0%
! CCCATATGGTTATATATTTA+GGG - chr8_1:89367995-89368014 Msa1224430:CDS 25.0%
! ACCCTAAATATATAACCATA+TGG + chr8_1:89367999-89368018 None:intergenic 25.0%
!!! CAAAATTTTCCTTAGTTTTC+TGG + chr8_1:89368053-89368072 None:intergenic 25.0%
!!! GAATTATGCAGAGTTATTTT+CGG + chr8_1:89368647-89368666 None:intergenic 25.0%
! TGAGTAGATTATATAAACCA+AGG + chr8_1:89368848-89368867 None:intergenic 25.0%
! TGAAAAAACTTGGAACAATT+AGG + chr8_1:89369027-89369046 None:intergenic 25.0%
!! TTTCAATTTTCAGATAGACT+CGG - chr8_1:89369042-89369061 Msa1224430:CDS 25.0%
! ACAATATCATGGTTTATAAG+CGG - chr8_1:89369236-89369255 Msa1224430:intron 25.0%
!!! AAGCTTACAATTTTGATAAC+CGG - chr8_1:89369350-89369369 Msa1224430:intron 25.0%
! ACATTCGTTTATTCTTTCAT+CGG - chr8_1:89369379-89369398 Msa1224430:intron 25.0%
!! TTTTGATGTCAAAAGAAAGA+GGG + chr8_1:89369470-89369489 None:intergenic 25.0%
!!! ATTTTGATGTCAAAAGAAAG+AGG + chr8_1:89369471-89369490 None:intergenic 25.0%
!! GTAAGAAATTGTGGTATTTT+AGG + chr8_1:89369586-89369605 None:intergenic 25.0%
! GTACATTAATGACATATACT+TGG - chr8_1:89369825-89369844 Msa1224430:intron 25.0%
!!! AGTTTGATTTTGTAGATACA+GGG + chr8_1:89369882-89369901 None:intergenic 25.0%
!!! AAGTTTGATTTTGTAGATAC+AGG + chr8_1:89369883-89369902 None:intergenic 25.0%
! TTCAAATAAAGATGGCTATT+TGG + chr8_1:89369916-89369935 None:intergenic 25.0%
! TATGTCACATATAAAGATCA+AGG - chr8_1:89370059-89370078 Msa1224430:intron 25.0%
! AGAATTACAACTCAGTTTTG+AGG + chr8_1:89366752-89366771 None:intergenic 30.0%
! AGAAATTGAAGGTGTAAGAA+TGG + chr8_1:89366997-89367016 None:intergenic 30.0%
TTACACCTTCAATTTCTAAC+TGG - chr8_1:89367000-89367019 Msa1224430:CDS 30.0%
TGTTTCCAGTTAGAAATTGA+AGG + chr8_1:89367008-89367027 None:intergenic 30.0%
AATTTCTAACTGGAAACAAC+AGG - chr8_1:89367010-89367029 Msa1224430:CDS 30.0%
TTGTGTATGTGTATCTTGTT+TGG - chr8_1:89367082-89367101 Msa1224430:CDS 30.0%
GTGAGATGAAACAATTGATA+TGG + chr8_1:89367211-89367230 None:intergenic 30.0%
TGAAAAAGGATCAGATCTAT+TGG + chr8_1:89367260-89367279 None:intergenic 30.0%
!! ATAGATCTGATCCTTTTTCA+TGG - chr8_1:89367260-89367279 Msa1224430:intron 30.0%
!! TAGATCTGATCCTTTTTCAT+GGG - chr8_1:89367261-89367280 Msa1224430:intron 30.0%
TCAATTACTACCCATGAAAA+AGG + chr8_1:89367274-89367293 None:intergenic 30.0%
!!! GATAAGTTTTAGATTGAAGG+TGG + chr8_1:89367342-89367361 None:intergenic 30.0%
ATGCTAAATAATCAGGAAAC+TGG + chr8_1:89367433-89367452 None:intergenic 30.0%
TCGAGTTATTCAGAAAGATT+AGG - chr8_1:89367477-89367496 Msa1224430:intron 30.0%
TTGAATCAACATTGTCTTGT+AGG - chr8_1:89367571-89367590 Msa1224430:intron 30.0%
TGAATCAACATTGTCTTGTA+GGG - chr8_1:89367572-89367591 Msa1224430:intron 30.0%
AATTAAAGTTTCCACAAGGT+TGG + chr8_1:89367636-89367655 None:intergenic 30.0%
!!! TCAAATATTTTGGTTCTGCA+TGG + chr8_1:89367801-89367820 None:intergenic 30.0%
AGAAAGTAAAGCTAGAAACT+AGG - chr8_1:89368322-89368341 Msa1224430:intron 30.0%
AACTCTGCATAATTCTGAAT+TGG - chr8_1:89368652-89368671 Msa1224430:intron 30.0%
CTCATTTCCTAGTTATCAAA+TGG - chr8_1:89368691-89368710 Msa1224430:intron 30.0%
! AGAAAAAACTGGACATTTTC+AGG - chr8_1:89368734-89368753 Msa1224430:intron 30.0%
! GAAAAAACTGGACATTTTCA+GGG - chr8_1:89368735-89368754 Msa1224430:intron 30.0%
! TTCATTTTGTGTGTTGGAAA+AGG - chr8_1:89369116-89369135 Msa1224430:intron 30.0%
!! AGCTTACAATTTTGATAACC+GGG - chr8_1:89369351-89369370 Msa1224430:intron 30.0%
AATAAACGAATGTGAATTCC+CGG + chr8_1:89369372-89369391 None:intergenic 30.0%
! TTCTTTTGACATCAAAATCC+AGG - chr8_1:89369473-89369492 Msa1224430:intron 30.0%
! TTCTTTTCATTACTTCGCAT+TGG - chr8_1:89369611-89369630 Msa1224430:intron 30.0%
!!! ATTGGAAAGTCTCTTTTTTC+TGG - chr8_1:89369629-89369648 Msa1224430:intron 30.0%
! ACCTCATACTTTTCCATAAA+TGG + chr8_1:89369799-89369818 None:intergenic 30.0%
ATATACTTGGCAAAGATTGA+TGG - chr8_1:89369838-89369857 Msa1224430:intron 30.0%
! AAGATTGATGGACATTATTC+TGG - chr8_1:89369850-89369869 Msa1224430:intron 30.0%
!! GTTTGATTTTGTAGATACAG+GGG + chr8_1:89369881-89369900 None:intergenic 30.0%
ACAATGAATTACTCCTCTTA+AGG + chr8_1:89369948-89369967 None:intergenic 30.0%
ATCAAGGATATGAACATAAG+TGG - chr8_1:89370075-89370094 Msa1224430:intron 30.0%
TGGAAGCAATAAAACAGTTT+GGG - chr8_1:89370095-89370114 Msa1224430:intron 30.0%
!! TATATTGCTATTTGCTGCTG+CGG - chr8_1:89366679-89366698 Msa1224430:three_prime_UTR 35.0%
TTGATCTTCTTCTTCTGTTG+AGG + chr8_1:89366883-89366902 None:intergenic 35.0%
! TCCACTGATGATGAATATAG+CGG - chr8_1:89366918-89366937 Msa1224430:exon 35.0%
!! CGGTGTTATCGTAGAATTAA+TGG - chr8_1:89366938-89366957 Msa1224430:CDS 35.0%
! ATTAATGGATCACCCTATCA+TGG - chr8_1:89366953-89366972 Msa1224430:CDS 35.0%
AGGTAGTAGAATCCATGATA+GGG + chr8_1:89366968-89366987 None:intergenic 35.0%
AAGGTAGTAGAATCCATGAT+AGG + chr8_1:89366969-89366988 None:intergenic 35.0%
AGGTGTAAGAATGGATAAGA+AGG + chr8_1:89366988-89367007 None:intergenic 35.0%
TATTAGTTAGGCAATATGGC+TGG - chr8_1:89367180-89367199 Msa1224430:intron 35.0%
TAGGAATACGGAACAAAACT+TGG - chr8_1:89367496-89367515 Msa1224430:intron 35.0%
AGGAATACGGAACAAAACTT+GGG - chr8_1:89367497-89367516 Msa1224430:intron 35.0%
ACAAAACTTGGGTCTCAATA+AGG - chr8_1:89367508-89367527 Msa1224430:intron 35.0%
CAAAACTTGGGTCTCAATAA+GGG - chr8_1:89367509-89367528 Msa1224430:intron 35.0%
AAATGACAAGTTAGTACGCA+AGG + chr8_1:89367723-89367742 None:intergenic 35.0%
! GCATCTGAAACTATAGTAAG+TGG + chr8_1:89368133-89368152 None:intergenic 35.0%
!! GCTTGATCAGAAGCATTATT+AGG - chr8_1:89368151-89368170 Msa1224430:CDS 35.0%
ATCCAGATAACTTTCTACGT+AGG - chr8_1:89368287-89368306 Msa1224430:intron 35.0%
TTCTACGTAGGTGTGTATAA+AGG - chr8_1:89368299-89368318 Msa1224430:intron 35.0%
AAACTAGGAATCTTTACCTC+AGG - chr8_1:89368337-89368356 Msa1224430:intron 35.0%
! CCTAACACCATTTGATAACT+AGG + chr8_1:89368701-89368720 None:intergenic 35.0%
CCTAGTTATCAAATGGTGTT+AGG - chr8_1:89368698-89368717 Msa1224430:intron 35.0%
CTAGTGCTTCAAGAAAAAAC+TGG - chr8_1:89368723-89368742 Msa1224430:intron 35.0%
TAGTAGAAGAAGCTATTCCT+TGG - chr8_1:89368828-89368847 Msa1224430:intron 35.0%
AGGAGTAAGTAATCTCTTTG+CGG - chr8_1:89368926-89368945 Msa1224430:intron 35.0%
ATGTCTAGTGCACATTCAAT+AGG + chr8_1:89368954-89368973 None:intergenic 35.0%
TGCACTAGACATGAACTTAT+TGG - chr8_1:89368962-89368981 Msa1224430:intron 35.0%
AATTAGGCTTAGAATCACGT+TGG + chr8_1:89369011-89369030 None:intergenic 35.0%
!! TTGTGGAAGTATTAGCATTC+AGG - chr8_1:89369068-89369087 Msa1224430:CDS 35.0%
GTGCACCAATAACAATATCA+TGG - chr8_1:89369225-89369244 Msa1224430:intron 35.0%
ACTTCTCAAAGAATGTCATG+TGG + chr8_1:89369419-89369438 None:intergenic 35.0%
! TTTTGACATCAAAATCCAGG+AGG - chr8_1:89369476-89369495 Msa1224430:intron 35.0%
TTAATTGTTATGTGCTGCAG+TGG - chr8_1:89369746-89369765 Msa1224430:intron 35.0%
TGAGCTGCATATTCATCAAA+TGG + chr8_1:89369775-89369794 None:intergenic 35.0%
! GCCATTTATGGAAAAGTATG+AGG - chr8_1:89369795-89369814 Msa1224430:intron 35.0%
!! TGGAAAAGTATGAGGTTTTG+AGG - chr8_1:89369803-89369822 Msa1224430:intron 35.0%
AATAAAGATGGCTATTTGGC+TGG + chr8_1:89369912-89369931 None:intergenic 35.0%
! AGCCATCTTTATTTGAATGC+TGG - chr8_1:89369919-89369938 Msa1224430:CDS 35.0%
CTCCAGCATTCAAATAAAGA+TGG + chr8_1:89369924-89369943 None:intergenic 35.0%
! CATCTTTATTTGAATGCTGG+AGG - chr8_1:89369922-89369941 Msa1224430:CDS 35.0%
GTGGAAGCAATAAAACAGTT+TGG - chr8_1:89370094-89370113 Msa1224430:intron 35.0%
GATAGTAGTTTAGTGTTGTC+TGG + chr8_1:89370136-89370155 None:intergenic 35.0%
GTAGAGTAAGACATTGTTGT+GGG + chr8_1:89370188-89370207 None:intergenic 35.0%
AGTAGAGTAAGACATTGTTG+TGG + chr8_1:89370189-89370208 None:intergenic 35.0%
!! ATATTGCTATTTGCTGCTGC+GGG - chr8_1:89366680-89366699 Msa1224430:three_prime_UTR 40.0%
ACCGCTATATTCATCATCAG+TGG + chr8_1:89366922-89366941 None:intergenic 40.0%
TCTAACTGGAAACAACAGGT+AGG - chr8_1:89367014-89367033 Msa1224430:CDS 40.0%
ATTGTCTTGTAGGGCAAGAA+GGG - chr8_1:89367581-89367600 Msa1224430:intron 40.0%
TATCTGTCACAATTCTGTGC+AGG - chr8_1:89367759-89367778 Msa1224430:intron 40.0%
! ATTCTGTGCAGGAAGGTTTT+TGG - chr8_1:89367770-89367789 Msa1224430:intron 40.0%
TGTGGTGAATGATAAACGAG+AGG - chr8_1:89367897-89367916 Msa1224430:intron 40.0%
GATCAGGTTTCTGCACAATT+TGG - chr8_1:89367959-89367978 Msa1224430:CDS 40.0%
GCATTATTAGGTGAGTCCTA+TGG - chr8_1:89368163-89368182 Msa1224430:intron 40.0%
CACCTACGTAGAAAGTTATC+TGG + chr8_1:89368292-89368311 None:intergenic 40.0%
AGATGGCTGTCCCTTTATTA+TGG - chr8_1:89368384-89368403 Msa1224430:intron 40.0%
GATGGCTGTCCCTTTATTAT+GGG - chr8_1:89368385-89368404 Msa1224430:intron 40.0%
AGATCACATAGGAAGACAGA+TGG + chr8_1:89368585-89368604 None:intergenic 40.0%
! GTACTGACAACAGATCACAT+AGG + chr8_1:89368596-89368615 None:intergenic 40.0%
ATTTACCTGATCAGCAACTC+CGG + chr8_1:89368784-89368803 None:intergenic 40.0%
TAATCTACTCATTCTGCTGC+AGG - chr8_1:89368857-89368876 Msa1224430:intron 40.0%
AATCTACTCATTCTGCTGCA+GGG - chr8_1:89368858-89368877 Msa1224430:intron 40.0%
AGAGAGGTCAAAGAAGAAAC+AGG - chr8_1:89368906-89368925 Msa1224430:intron 40.0%
TCAGATAGACTCGGAATTTG+TGG - chr8_1:89369051-89369070 Msa1224430:CDS 40.0%
!! TGGAAGTATTAGCATTCAGG+TGG - chr8_1:89369071-89369090 Msa1224430:CDS 40.0%
!! GGAAGTATTAGCATTCAGGT+GGG - chr8_1:89369072-89369091 Msa1224430:CDS 40.0%
AGGAAGTTCCAAACTTCCAA+TGG - chr8_1:89369136-89369155 Msa1224430:intron 40.0%
ATGTTCAGCCATTGGAAGTT+TGG + chr8_1:89369147-89369166 None:intergenic 40.0%
AAACTTCCAATGGCTGAACA+TGG - chr8_1:89369146-89369165 Msa1224430:intron 40.0%
AACGTGACCAAGCAAAAACA+AGG + chr8_1:89369177-89369196 None:intergenic 40.0%
ATATGCAGCTCAGCCATTTA+TGG - chr8_1:89369783-89369802 Msa1224430:intron 40.0%
TTGTTGTGGGACAAAATTCC+AGG + chr8_1:89370175-89370194 None:intergenic 40.0%
ACTGGAAACAACAGGTAGGT+AGG - chr8_1:89367018-89367037 Msa1224430:CDS 45.0%
CATTGTCTTGTAGGGCAAGA+AGG - chr8_1:89367580-89367599 Msa1224430:intron 45.0%
! ACAAGGTTGGCCAGATGAAT+AGG + chr8_1:89367623-89367642 None:intergenic 45.0%
TATTCATCTGGCCAACCTTG+TGG - chr8_1:89367622-89367641 Msa1224430:intron 45.0%
TGTCACAATTCTGTGCAGGA+AGG - chr8_1:89367763-89367782 Msa1224430:intron 45.0%
TGTGCAGAAACCTGATCATG+TGG + chr8_1:89367956-89367975 None:intergenic 45.0%
GAAGCACAAACACTCCCATA+TGG - chr8_1:89367981-89368000 Msa1224430:CDS 45.0%
!! CTTAGTTTTCTGGTCACGCT+AGG + chr8_1:89368043-89368062 None:intergenic 45.0%
CTAGCGTGACCAGAAAACTA+AGG - chr8_1:89368041-89368060 Msa1224430:intron 45.0%
ACAAGCTCAACAAGCTCATG+AGG - chr8_1:89368099-89368118 Msa1224430:CDS 45.0%
GTCCTATGGATACACAACTC+CGG - chr8_1:89368177-89368196 Msa1224430:intron 45.0%
TATGGATACACAACTCCGGT+GGG - chr8_1:89368181-89368200 Msa1224430:intron 45.0%
GGAAACCTTTACCGTTCTTC+AGG + chr8_1:89368209-89368228 None:intergenic 45.0%
CACACTCCCATATGGTTAGA+TGG - chr8_1:89368367-89368386 Msa1224430:intron 45.0%
GGACAGCCATCTAACCATAT+GGG + chr8_1:89368376-89368395 None:intergenic 45.0%
!! ACTGGACATTTTCAGGGAAC+TGG - chr8_1:89368741-89368760 Msa1224430:intron 45.0%
!! ATTTTCAGGGAACTGGATCC+TGG - chr8_1:89368748-89368767 Msa1224430:intron 45.0%
GGATCCTGGAAATTTCCTAC+CGG - chr8_1:89368762-89368781 Msa1224430:intron 45.0%
AACTCCGGTAGGAAATTTCC+AGG + chr8_1:89368769-89368788 None:intergenic 45.0%
!!! TCACGTTGGTTCTTTTGTCG+TGG + chr8_1:89368997-89369016 None:intergenic 45.0%
!!! GGAGAGTCCTTGTTTTTGCT+TGG - chr8_1:89369167-89369186 Msa1224430:intron 45.0%
GGTAGAGATAGAAGCTGCAA+AGG - chr8_1:89369497-89369516 Msa1224430:intron 45.0%
! TCCTGTCTCTTTTGTACACC+TGG - chr8_1:89370154-89370173 Msa1224430:five_prime_UTR 45.0%
TCCAGGTGTACAAAAGAGAC+AGG + chr8_1:89370158-89370177 None:intergenic 45.0%
AAGGGACAGTTTACCTGTGC+TGG - chr8_1:89367527-89367546 Msa1224430:intron 50.0%
CTAGTGACGATTTCCAGCAC+AGG + chr8_1:89367543-89367562 None:intergenic 50.0%
!! TGTAGGGCAAGAAGGGTGTT+TGG - chr8_1:89367588-89367607 Msa1224430:intron 50.0%
GTGTGTGGCATTTGCAGGAA+TGG + chr8_1:89367857-89367876 None:intergenic 50.0%
CAAACGCTCCAATACCCACT+CGG + chr8_1:89367879-89367898 None:intergenic 50.0%
!! AGTGGGTATTGGAGCGTTTG+TGG - chr8_1:89367879-89367898 Msa1224430:intron 50.0%
TGCAGAGCAACCACATGATC+AGG - chr8_1:89367943-89367962 Msa1224430:intron 50.0%
CACCGGAGTTGTGTATCCAT+AGG + chr8_1:89368182-89368201 None:intergenic 50.0%
CTATGGATACACAACTCCGG+TGG - chr8_1:89368180-89368199 Msa1224430:intron 50.0%
GGGTTCCTGAAGAACGGTAA+AGG - chr8_1:89368201-89368220 Msa1224430:intron 50.0%
GAAGCACACACACTCCCATA+TGG - chr8_1:89368359-89368378 Msa1224430:intron 50.0%
GGGACAGCCATCTAACCATA+TGG + chr8_1:89368377-89368396 None:intergenic 50.0%
TTGTGCAGCAGCAGTAAGAG+AGG - chr8_1:89368890-89368909 Msa1224430:intron 50.0%
GACTCTCCATGTTCAGCCAT+TGG + chr8_1:89369155-89369174 None:intergenic 50.0%
AGCGGTCAGATAATACGTGC+TGG - chr8_1:89369254-89369273 Msa1224430:CDS 50.0%
CAGCTTCTATCTCTACCTCC+TGG + chr8_1:89369494-89369513 None:intergenic 50.0%
TGAATGCTGGAGGCCTTAAG+AGG - chr8_1:89369932-89369951 Msa1224430:CDS 50.0%
!! TTGCTATTTGCTGCTGCGGG+AGG - chr8_1:89366683-89366702 Msa1224430:three_prime_UTR 55.0%
!! ACTCGGTGTGTGGCATTTGC+AGG + chr8_1:89367862-89367881 None:intergenic 55.0%
TGCAAATGCCACACACCGAG+TGG - chr8_1:89367861-89367880 Msa1224430:intron 55.0%
GCAAATGCCACACACCGAGT+GGG - chr8_1:89367862-89367881 Msa1224430:intron 55.0%
!! TCCAATACCCACTCGGTGTG+TGG + chr8_1:89367872-89367891 None:intergenic 55.0%
! TCCGGTGGGTTCCTGAAGAA+CGG - chr8_1:89368195-89368214 Msa1224430:intron 55.0%
ACCGTTCTTCAGGAACCCAC+CGG + chr8_1:89368199-89368218 None:intergenic 55.0%
TCCTACCGGAGTTGCTGATC+AGG - chr8_1:89368776-89368795 Msa1224430:intron 55.0%
ACCTGATCAGCAACTCCGGT+AGG + chr8_1:89368780-89368799 None:intergenic 55.0%
GCCACACACCGAGTGGGTAT+TGG - chr8_1:89367868-89367887 Msa1224430:intron 60.0%
! GGGAGTGTGTGTGCTTCCTG+AGG + chr8_1:89368356-89368375 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 89366673 89370223 89366673 ID=Msa1224430;Name=Msa1224430
chr8_1 mRNA 89366673 89370223 89366673 ID=Msa1224430-mRNA-1;Parent=Msa1224430;Name=Msa1224430-mRNA-1;_AED=0.25;_eAED=0.25;_QI=100|0.87|0.88|1|0.87|0.77|9|254|285
chr8_1 exon 89366673 89367130 89366673 ID=Msa1224430-mRNA-1:exon:32433;Parent=Msa1224430-mRNA-1
chr8_1 exon 89367378 89367486 89367378 ID=Msa1224430-mRNA-1:exon:32432;Parent=Msa1224430-mRNA-1
chr8_1 exon 89367807 89367841 89367807 ID=Msa1224430-mRNA-1:exon:32431;Parent=Msa1224430-mRNA-1
chr8_1 exon 89367949 89368017 89367949 ID=Msa1224430-mRNA-1:exon:32430;Parent=Msa1224430-mRNA-1
chr8_1 exon 89368099 89368176 89368099 ID=Msa1224430-mRNA-1:exon:32429;Parent=Msa1224430-mRNA-1
chr8_1 exon 89368978 89369115 89368978 ID=Msa1224430-mRNA-1:exon:32428;Parent=Msa1224430-mRNA-1
chr8_1 exon 89369238 89369303 89369238 ID=Msa1224430-mRNA-1:exon:32427;Parent=Msa1224430-mRNA-1
chr8_1 exon 89369865 89370032 89369865 ID=Msa1224430-mRNA-1:exon:32426;Parent=Msa1224430-mRNA-1
chr8_1 exon 89370133 89370223 89370133 ID=Msa1224430-mRNA-1:exon:32425;Parent=Msa1224430-mRNA-1
chr8_1 five_prime_UTR 89370133 89370223 89370133 ID=Msa1224430-mRNA-1:five_prime_utr;Parent=Msa1224430-mRNA-1
chr8_1 five_prime_UTR 89370024 89370032 89370024 ID=Msa1224430-mRNA-1:five_prime_utr;Parent=Msa1224430-mRNA-1
chr8_1 CDS 89369865 89370023 89369865 ID=Msa1224430-mRNA-1:cds;Parent=Msa1224430-mRNA-1
chr8_1 CDS 89369238 89369303 89369238 ID=Msa1224430-mRNA-1:cds;Parent=Msa1224430-mRNA-1
chr8_1 CDS 89368978 89369115 89368978 ID=Msa1224430-mRNA-1:cds;Parent=Msa1224430-mRNA-1
chr8_1 CDS 89368099 89368176 89368099 ID=Msa1224430-mRNA-1:cds;Parent=Msa1224430-mRNA-1
chr8_1 CDS 89367949 89368017 89367949 ID=Msa1224430-mRNA-1:cds;Parent=Msa1224430-mRNA-1
chr8_1 CDS 89367807 89367841 89367807 ID=Msa1224430-mRNA-1:cds;Parent=Msa1224430-mRNA-1
chr8_1 CDS 89367378 89367486 89367378 ID=Msa1224430-mRNA-1:cds;Parent=Msa1224430-mRNA-1
chr8_1 CDS 89366927 89367130 89366927 ID=Msa1224430-mRNA-1:cds;Parent=Msa1224430-mRNA-1
chr8_1 three_prime_UTR 89366673 89366926 89366673 ID=Msa1224430-mRNA-1:three_prime_utr;Parent=Msa1224430-mRNA-1
Gene Sequence

>Msa1224430

ATGTCAGCCTCAACAGAAGAAGAAGATCAAATTCAACTACTTACATCCACTGATGATGAATATAGCGGTGTTATCGTAGAATTAATGGATCACCCTATCATGGATTCTACTACCTTCTTATCCATTCTTACACCTTCAATTTCTAACTGGAAACAACAGGGCAAGAAGGGTGTTTGGATAAAATTACCTATTCATCTGGCCAACCTTGTGGAAACTTTAATTAATGAAGGTTTTTGGTATCACCATGCAGAACCAAAATATTTGATGCTTGTACATTGGATTGCAGACAGTGCAAACACCATTCCTGCAAATGCCACACACCGAGTGGGTATTGGAGCGTTTGTGGTGAATGATAAACGAGAGGTTCTAGTGCTTCAAGAAAAAACTGGACATTTTCAGGGAACTGGATCCTGGAAATTTCCTACCGGAGTTGCTGATCAGGGAGAAGACATTTGTGCAGCAGCAGTAAGAGAGGTCAAAGAAGAAACAGGAGTAAGTAATCTCTTTGCGATAGACTCGGAATTTGTGGAAGTATTAGCATTCAGACAAAGCCACATGACATTCTTTGAGAAGTCAGATCTATTCTTTGTGTGCTTGTTGCGCCCTCTTTCTTTTGACATCAAAATCCAGGAGGTAGAGATAGAAGCTGCAAAGTGGATGCCATTTGATGAATATGCAGCTCAGCCATTTATGGAAAAGTATGAGGTTTTGAGGTACATTAATGACATATACTTGGCAAAGATTGATGGACATTATTCTGGATTTGCCCCTGTATCTACAAAATCAAACTTCTCTAACCAGCCAAATAGCCATCTTTATTTGAATGCTGGAGGCCTTAAGAGGAGTAATTCATTGTAA

Protein sequence

>Msa1224430

MSASTEEEDQIQLLTSTDDEYSGVIVELMDHPIMDSTTFLSILTPSISNWKQQGKKGVWIKLPIHLANLVETLINEGFWYHHAEPKYLMLVHWIADSANTIPANATHRVGIGAFVVNDKREVLVLQEKTGHFQGTGSWKFPTGVADQGEDICAAAVREVKEETGVSNLFAIDSEFVEVLAFRQSHMTFFEKSDLFFVCLLRPLSFDIKIQEVEIEAAKWMPFDEYAAQPFMEKYEVLRYINDIYLAKIDGHYSGFAPVSTKSNFSNQPNSHLYLNAGGLKRSNSL*