Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457400 | XP_013458657.1 | 95.088 | 285 | 7 | 2 | 1 | 285 | 1 | 278 | 0.0 | 558 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457400 | sp|Q94B74|NUDT2_ARATH | 55.363 | 289 | 112 | 5 | 1 | 283 | 1 | 278 | 4.86e-108 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457400 | A0A072US93 | 95.088 | 285 | 7 | 2 | 1 | 285 | 1 | 278 | 0.0 | 558 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002490 | Msa1457400 | 0.802521 | 5.392453e-49 | -8.615850e-47 |
| Msa0016670 | Msa1457400 | 0.823708 | 1.197358e-53 | -8.615850e-47 |
| Msa0052610 | Msa1457400 | 0.815898 | 7.302720e-52 | -8.615850e-47 |
| Msa0094580 | Msa1457400 | 0.803176 | 3.950607e-49 | -8.615850e-47 |
| Msa0097850 | Msa1457400 | 0.809039 | 2.303743e-50 | -8.615850e-47 |
| Msa1389160 | Msa1457400 | 0.876714 | 1.120700e-68 | -8.615850e-47 |
| Msa1413180 | Msa1457400 | 0.806937 | 6.454866e-50 | -8.615850e-47 |
| Msa1428810 | Msa1457400 | 0.804243 | 2.372417e-49 | -8.615850e-47 |
| Msa1429500 | Msa1457400 | 0.814123 | 1.808329e-51 | -8.615850e-47 |
| Msa1442850 | Msa1457400 | 0.826748 | 2.287949e-54 | -8.615850e-47 |
| Msa1457400 | Msa1465080 | 0.805254 | 1.458840e-49 | -8.615850e-47 |
| Msa0657790 | Msa1457400 | 0.806410 | 8.336408e-50 | -8.615850e-47 |
| Msa0659030 | Msa1457400 | 0.808212 | 3.459795e-50 | -8.615850e-47 |
| Msa0683780 | Msa1457400 | 0.809909 | 1.498825e-50 | -8.615850e-47 |
| Msa0687630 | Msa1457400 | 0.810104 | 1.360541e-50 | -8.615850e-47 |
| Msa0705040 | Msa1457400 | 0.802699 | 4.957362e-49 | -8.615850e-47 |
| Msa0709780 | Msa1457400 | 0.812837 | 3.467388e-51 | -8.615850e-47 |
| Msa0726090 | Msa1457400 | 0.800913 | 1.152932e-48 | -8.615850e-47 |
| Msa0125770 | Msa1457400 | 0.814911 | 1.210731e-51 | -8.615850e-47 |
| Msa0166460 | Msa1457400 | 0.800059 | 1.721523e-48 | -8.615850e-47 |
| Msa0171850 | Msa1457400 | 0.802040 | 6.775212e-49 | -8.615850e-47 |
| Msa0185400 | Msa1457400 | 0.808052 | 3.742063e-50 | -8.615850e-47 |
| Msa0226460 | Msa1457400 | 0.814400 | 1.570801e-51 | -8.615850e-47 |
| Msa1225660 | Msa1457400 | 0.809478 | 1.854970e-50 | -8.615850e-47 |
| Msa1227690 | Msa1457400 | 0.814126 | 1.806015e-51 | -8.615850e-47 |
| Msa1307950 | Msa1457400 | 0.823194 | 1.579647e-53 | -8.615850e-47 |
| Msa1310690 | Msa1457400 | 0.801894 | 7.260145e-49 | -8.615850e-47 |
| Msa1332480 | Msa1457400 | 0.885891 | 5.499510e-72 | -8.615850e-47 |
| Msa1333560 | Msa1457400 | 0.815007 | 1.152334e-51 | -8.615850e-47 |
| Msa1333760 | Msa1457400 | 0.863417 | 2.527091e-64 | -8.615850e-47 |
| Msa0394400 | Msa1457400 | 0.806795 | 6.914434e-50 | -8.615850e-47 |
| Msa0416400 | Msa1457400 | 0.809667 | 1.689500e-50 | -8.615850e-47 |
| Msa0434920 | Msa1457400 | 0.801685 | 8.014285e-49 | -8.615850e-47 |
| Msa1079230 | Msa1457400 | 0.801782 | 7.652354e-49 | -8.615850e-47 |
| Msa1124110 | Msa1457400 | 0.819778 | 9.713843e-53 | -8.615850e-47 |
| Msa1131560 | Msa1457400 | 0.816677 | 4.888057e-52 | -8.615850e-47 |
| Msa1143650 | Msa1457400 | 0.825856 | 3.730811e-54 | -8.615850e-47 |
| Msa1145240 | Msa1457400 | 0.800478 | 1.414355e-48 | -8.615850e-47 |
| Msa1168950 | Msa1457400 | 0.829329 | 5.471173e-55 | -8.615850e-47 |
| Msa1169040 | Msa1457400 | 0.841033 | 6.071506e-58 | -8.615850e-47 |
| Msa1184370 | Msa1457400 | 0.818107 | 2.329293e-52 | -8.615850e-47 |
| Msa1224430 | Msa1457400 | 0.877632 | 5.376137e-69 | -8.615850e-47 |
| Msa0848530 | Msa1457400 | 0.820176 | 7.875430e-53 | -8.615850e-47 |
| Msa0864010 | Msa1457400 | 0.804527 | 2.069594e-49 | -8.615850e-47 |
| Msa0953150 | Msa1457400 | 0.831805 | 1.355770e-55 | -8.615850e-47 |
| Msa0966270 | Msa1457400 | 0.812471 | 4.170459e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457400 | MtrunA17_Chr4g0076351 | 95.088 | 285 | 7 | 2 | 1 | 285 | 1 | 278 | 0.0 | 558 |
| Msa1457400 | MtrunA17_Chr2g0290501 | 70.526 | 285 | 74 | 5 | 1 | 284 | 58 | 333 | 2.15e-146 | 414 |
| Msa1457400 | MtrunA17_Chr3g0102431 | 57.509 | 273 | 107 | 3 | 11 | 283 | 23 | 286 | 7.49e-110 | 319 |
| Msa1457400 | MtrunA17_Chr8g0383231 | 56.107 | 262 | 105 | 3 | 14 | 275 | 19 | 270 | 1.55e-101 | 298 |
| Msa1457400 | MtrunA17_Chr3g0120821 | 52.852 | 263 | 113 | 4 | 13 | 275 | 80 | 331 | 1.48e-99 | 295 |
| Msa1457400 | MtrunA17_Chr4g0055811 | 45.788 | 273 | 140 | 3 | 13 | 285 | 91 | 355 | 3.98e-82 | 251 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457400 | AT5G47650.5 | 55.363 | 289 | 112 | 5 | 1 | 283 | 1 | 278 | 4.94e-109 | 317 |
| Msa1457400 | AT5G47650.3 | 55.363 | 289 | 112 | 5 | 1 | 283 | 1 | 278 | 4.94e-109 | 317 |
| Msa1457400 | AT5G47650.1 | 55.363 | 289 | 112 | 5 | 1 | 283 | 1 | 278 | 4.94e-109 | 317 |
| Msa1457400 | AT5G47650.4 | 56.318 | 277 | 110 | 4 | 7 | 283 | 59 | 324 | 4.16e-108 | 317 |
| Msa1457400 | AT5G47650.2 | 56.318 | 277 | 110 | 4 | 7 | 283 | 60 | 325 | 4.96e-108 | 316 |
| Msa1457400 | AT4G25434.10 | 53.137 | 271 | 114 | 5 | 7 | 275 | 13 | 272 | 2.17e-95 | 283 |
| Msa1457400 | AT4G25434.8 | 50.000 | 292 | 118 | 6 | 7 | 275 | 13 | 299 | 2.13e-93 | 278 |
| Msa1457400 | AT4G25434.1 | 52.030 | 271 | 112 | 6 | 7 | 275 | 13 | 267 | 3.07e-90 | 269 |
| Msa1457400 | AT4G12720.2 | 50.000 | 274 | 125 | 5 | 10 | 281 | 7 | 270 | 1.17e-88 | 266 |
| Msa1457400 | AT4G12720.3 | 50.000 | 274 | 125 | 5 | 10 | 281 | 7 | 270 | 1.17e-88 | 266 |
| Msa1457400 | AT4G12720.1 | 50.000 | 274 | 125 | 5 | 10 | 281 | 7 | 270 | 1.17e-88 | 266 |
| Msa1457400 | AT4G25434.2 | 48.973 | 292 | 116 | 7 | 7 | 275 | 13 | 294 | 2.27e-88 | 266 |
| Msa1457400 | AT4G25434.7 | 58.937 | 207 | 77 | 3 | 12 | 218 | 18 | 216 | 7.40e-83 | 248 |
| Msa1457400 | AT5G47240.1 | 47.842 | 278 | 129 | 6 | 1 | 275 | 86 | 350 | 4.47e-82 | 252 |
| Msa1457400 | AT4G25434.6 | 54.825 | 228 | 80 | 4 | 12 | 218 | 18 | 243 | 4.10e-81 | 245 |
| Msa1457400 | AT2G04450.1 | 48.529 | 272 | 127 | 6 | 7 | 275 | 4 | 265 | 9.41e-81 | 245 |
| Msa1457400 | AT4G12720.4 | 43.631 | 314 | 125 | 6 | 10 | 281 | 7 | 310 | 1.01e-80 | 247 |
| Msa1457400 | AT2G04430.2 | 48.016 | 252 | 122 | 3 | 7 | 255 | 4 | 249 | 7.87e-78 | 238 |
| Msa1457400 | AT4G25434.9 | 57.488 | 207 | 75 | 4 | 12 | 218 | 18 | 211 | 8.11e-78 | 235 |
| Msa1457400 | AT2G04430.1 | 48.016 | 252 | 122 | 3 | 7 | 255 | 23 | 268 | 1.45e-77 | 238 |
| Msa1457400 | AT5G47240.2 | 43.322 | 307 | 129 | 7 | 1 | 275 | 86 | 379 | 1.07e-75 | 236 |
| Msa1457400 | AT4G25434.3 | 55.122 | 205 | 81 | 3 | 73 | 275 | 32 | 227 | 3.16e-75 | 230 |
| Msa1457400 | AT4G25434.5 | 55.122 | 205 | 81 | 3 | 73 | 275 | 32 | 227 | 3.16e-75 | 230 |
| Msa1457400 | AT4G12720.5 | 53.555 | 211 | 88 | 4 | 10 | 218 | 7 | 209 | 4.16e-73 | 224 |
| Msa1457400 | AT4G25434.4 | 53.659 | 205 | 79 | 4 | 73 | 275 | 32 | 222 | 5.65e-70 | 216 |
| Msa1457400 | AT4G25434.13 | 49.524 | 210 | 80 | 4 | 89 | 275 | 1 | 207 | 6.95e-64 | 200 |
| Msa1457400 | AT4G25434.12 | 55.429 | 175 | 70 | 3 | 7 | 181 | 13 | 179 | 4.97e-62 | 196 |
| Msa1457400 | AT4G25434.11 | 50.510 | 196 | 74 | 4 | 7 | 181 | 13 | 206 | 4.32e-60 | 192 |
| Msa1457400 | AT4G12720.6 | 48.205 | 195 | 91 | 4 | 89 | 281 | 1 | 187 | 6.45e-56 | 179 |
| Msa1457400 | AT2G04440.1 | 43.269 | 208 | 104 | 3 | 7 | 201 | 4 | 210 | 7.30e-48 | 159 |
Find 69 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTACAAGCATCAAATATTT+TGG | 0.159229 | tig0038881:-2206 | Msa1457400:intergenic |
| TTCAAATAAAGATGGCTATT+TGG | 0.203005 | tig0038881:-4311 | Msa1457400:intergenic |
| AAGATTGATGGACATTATTC+TGG | 0.227648 | tig0038881:+4248 | Msa1457400:CDS |
| ATTAATGGATCACCCTATTA+TGG | 0.228313 | tig0038881:+1372 | Msa1457400:CDS |
| ATATGCAGCTCAGCCATTTA+TGG | 0.279024 | tig0038881:+4181 | Msa1457400:CDS |
| TTGTGGAAGTATTAGCATTC+AGG | 0.296467 | tig0038881:+3466 | Msa1457400:CDS |
| CGGTGTTATCGTAGAATTAA+TGG | 0.299809 | tig0038881:+1357 | Msa1457400:CDS |
| TTACACCTTCAATTTCTAAC+TGG | 0.317897 | tig0038881:+1419 | Msa1457400:CDS |
| AAGGTAGTAGAATCCATAAT+AGG | 0.322907 | tig0038881:-1385 | Msa1457400:intergenic |
| GTGGAAGCAATAAAACAGTT+TGG | 0.339576 | tig0038881:+4492 | Msa1457400:three_prime_UTR |
| GATAAAATTACCTATTCATC+TGG | 0.356295 | tig0038881:+2008 | Msa1457400:CDS |
| ACAATGAATTACTCCTCTTA+AGG | 0.361763 | tig0038881:-4343 | Msa1457400:intergenic |
| GATAGTAGTTTAGTGTTGTC+TGG | 0.366743 | tig0038881:-4531 | Msa1457400:intergenic |
| ACTCGGTGTGTGGCATTTGC+AGG | 0.374095 | tig0038881:-2257 | Msa1457400:intergenic |
| GCCATTTATGGAAAAGTATG+AGG | 0.393678 | tig0038881:+4193 | Msa1457400:CDS |
| TTGTTGTGGGACAAAATTCC+AGG | 0.396840 | tig0038881:-4570 | Msa1457400:intergenic |
| CAGCTTCTATCTCTACCTCC+TGG | 0.398995 | tig0038881:-3889 | Msa1457400:intergenic |
| TCCTACCGGAGTTGCTGATC+AGG | 0.409277 | tig0038881:+3174 | Msa1457400:CDS |
| TATTATAGTTACAATTCAAT+TGG | 0.413564 | tig0038881:-4424 | Msa1457400:intergenic |
| AATAAAGATGGCTATTTGGC+TGG | 0.419860 | tig0038881:-4307 | Msa1457400:intergenic |
| ACAAGGTTGGCCAGATGAAT+AGG | 0.422162 | tig0038881:-2018 | Msa1457400:intergenic |
| TGGAAGCAATAAAACAGTTT+GGG | 0.426111 | tig0038881:+4493 | Msa1457400:three_prime_UTR |
| TGTAGGGCAAGAAGGGTGTT+TGG | 0.427765 | tig0038881:+1986 | Msa1457400:intron |
| AATATTTGATGCTTGTACAT+TGG | 0.428434 | tig0038881:+2210 | Msa1457400:CDS |
| AGCCATCTTTATTTGAATGC+TGG | 0.428650 | tig0038881:+4317 | Msa1457400:CDS |
| GCCACACACCGAGTGGGTAT+TGG | 0.432566 | tig0038881:+2266 | Msa1457400:CDS |
| AGAGAGGTCAAAGAAGAAAC+AGG | 0.434993 | tig0038881:+3304 | Msa1457400:CDS |
| TGTTTCCAGTTAGAAATTGA+AGG | 0.439398 | tig0038881:-1424 | Msa1457400:intergenic |
| AGGTAGTAGAATCCATAATA+GGG | 0.451351 | tig0038881:-1384 | Msa1457400:intergenic |
| CATTGTCTTGTAGGGCAAGA+AGG | 0.454453 | tig0038881:+1978 | Msa1457400:intron |
| TTGAGCTTCTTCTTCTGTTG+AGG | 0.459694 | tig0038881:-1299 | Msa1457400:intergenic |
| TCAGATAGACTCGGAATTTG+TGG | 0.463019 | tig0038881:+3449 | Msa1457400:intron |
| ATATACTTGGCAAAGATTGA+TGG | 0.464974 | tig0038881:+4236 | Msa1457400:CDS |
| AATTTCTAACTGGAAACAAC+AGG | 0.477830 | tig0038881:+1429 | Msa1457400:CDS |
| TGAATGCTGGAGGCCTTAAG+AGG | 0.480821 | tig0038881:+4330 | Msa1457400:CDS |
| AATTAAAGTTTCCACAAGGT+TGG | 0.483065 | tig0038881:-2031 | Msa1457400:intergenic |
| AACTCCGGTAGGAAATTTCC+AGG | 0.487178 | tig0038881:-3164 | Msa1457400:intergenic |
| AGTGGGTATTGGAGCGTTTG+TGG | 0.488578 | tig0038881:+2277 | Msa1457400:CDS |
| AGAAATTGAAGGTGTAAGAA+TGG | 0.490971 | tig0038881:-1413 | Msa1457400:intergenic |
| TGAGCTGCATATTCATCAAA+TGG | 0.494421 | tig0038881:-4170 | Msa1457400:intergenic |
| ATCAAGGATATGAACATAAG+TGG | 0.494948 | tig0038881:+4473 | Msa1457400:three_prime_UTR |
| TATATTGCTATTTGCTGCTG+CGG | 0.508453 | tig0038881:+1096 | Msa1457400:five_prime_UTR |
| GTGTGTGGCATTTGCAGGAA+TGG | 0.522297 | tig0038881:-2252 | Msa1457400:intergenic |
| TATGTCACATATAAAGATCA+AGG | 0.525997 | tig0038881:+4457 | Msa1457400:three_prime_UTR |
| TCCAGGTGTACAAAAGAGAC+AGG | 0.526090 | tig0038881:-4553 | Msa1457400:intergenic |
| CTCCAGCATTCAAATAAAGA+TGG | 0.531291 | tig0038881:-4319 | Msa1457400:intergenic |
| AGGTGTAAGAATGGATAAGA+AGG | 0.540844 | tig0038881:-1404 | Msa1457400:intergenic |
| ATATTGCTATTTGCTGCTGC+GGG | 0.542929 | tig0038881:+1097 | Msa1457400:five_prime_UTR |
| TGCAAATGCCACACACCGAG+TGG | 0.544339 | tig0038881:+2259 | Msa1457400:CDS |
| GTAGAGTAAGACATTGTTGT+GGG | 0.545467 | tig0038881:-4583 | Msa1457400:intergenic |
| GGTAGAGATAGAAGCTGCAA+AGG | 0.549918 | tig0038881:+3895 | Msa1457400:CDS |
| ATTGTCTTGTAGGGCAAGAA+GGG | 0.550569 | tig0038881:+1979 | Msa1457400:intron |
| CATCTTTATTTGAATGCTGG+AGG | 0.553074 | tig0038881:+4320 | Msa1457400:CDS |
| TATTCATCTGGCCAACCTTG+TGG | 0.553285 | tig0038881:+2020 | Msa1457400:CDS |
| TCCAATACCCACTCGGTGTG+TGG | 0.564012 | tig0038881:-2267 | Msa1457400:intergenic |
| TTGTGCAGCAGCAGTAAGAG+AGG | 0.565131 | tig0038881:+3288 | Msa1457400:CDS |
| AGGAGTAAGTAATCTCTTTG+CGG | 0.575207 | tig0038881:+3324 | Msa1457400:CDS |
| GTACATTAATGACATATACT+TGG | 0.579892 | tig0038881:+4223 | Msa1457400:CDS |
| TTGCTATTTGCTGCTGCGGG+AGG | 0.587723 | tig0038881:+1100 | Msa1457400:five_prime_UTR |
| CATTAATTAAAGTTTCCACA+AGG | 0.606195 | tig0038881:-2035 | Msa1457400:intergenic |
| GGATCCTGGAAATTTCCTAC+CGG | 0.606581 | tig0038881:+3160 | Msa1457400:CDS |
| ATTTACCTGATCAGCAACTC+CGG | 0.611010 | tig0038881:-3179 | Msa1457400:intergenic |
| AGTAGAGTAAGACATTGTTG+TGG | 0.635377 | tig0038881:-4584 | Msa1457400:intergenic |
| CAAACGCTCCAATACCCACT+CGG | 0.649930 | tig0038881:-2274 | Msa1457400:intergenic |
| ACCTGATCAGCAACTCCGGT+AGG | 0.652284 | tig0038881:-3175 | Msa1457400:intergenic |
| GCAAATGCCACACACCGAGT+GGG | 0.669457 | tig0038881:+2260 | Msa1457400:CDS |
| ACTTCTCAAAGAATGTCATG+TGG | 0.686811 | tig0038881:-3814 | Msa1457400:intergenic |
| TGTGGTGAATGATAAACGAG+AGG | 0.692588 | tig0038881:+2295 | Msa1457400:CDS |
| TCAACTGATGATGAATATAG+CGG | 0.707705 | tig0038881:+1337 | Msa1457400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAATTATTATACTATAGAT+AGG | + | tig0038881:1232-1251 | Msa1457400:intron | 15.0% |
| !! | AATTAATTTACTAACTCTAA+TGG | + | tig0038881:1467-1486 | Msa1457400:intron | 15.0% |
| !!! | AACTTTCTTATTTTGAAAAT+AGG | - | tig0038881:2628-2647 | Msa1457400:intergenic | 15.0% |
| !! | TATTATAGTTACAATTCAAT+TGG | - | tig0038881:4427-4446 | Msa1457400:intergenic | 15.0% |
| !! | CTTATCCTTAATCAATTTAA+AGG | + | tig0038881:1552-1571 | Msa1457400:intron | 20.0% |
| !! | AGTATCCTTTAAATTGATTA+AGG | - | tig0038881:1560-1579 | Msa1457400:intergenic | 20.0% |
| !! | GTAGTAATTGAACTAATTAA+GGG | + | tig0038881:1681-1700 | Msa1457400:intron | 20.0% |
| !! | TCAAAATAAGAAAGTTAACA+AGG | + | tig0038881:2632-2651 | Msa1457400:intron | 20.0% |
| !! | ATTTCTATTCCCATAATAAA+GGG | - | tig0038881:2795-2814 | Msa1457400:intergenic | 20.0% |
| !! | AATTTCTATTCCCATAATAA+AGG | - | tig0038881:2796-2815 | Msa1457400:intergenic | 20.0% |
| !!! | AATGTTATTTCTATGTATCA+AGG | - | tig0038881:2895-2914 | Msa1457400:intergenic | 20.0% |
| !! | ATCTGAAAATTGAAAAAACT+TGG | - | tig0038881:3435-3454 | Msa1457400:intergenic | 20.0% |
| !!! | TAATATTTCATTTTGTGTGT+TGG | + | tig0038881:3508-3527 | Msa1457400:intron | 20.0% |
| !! | ATAAACCATGATATTGTTAT+TGG | - | tig0038881:3631-3650 | Msa1457400:intergenic | 20.0% |
| !! | CAACAACTAAACAATAAAAT+CGG | - | tig0038881:3693-3712 | Msa1457400:intergenic | 20.0% |
| !! | TTTAGTTGTTGAAAAAATGT+AGG | + | tig0038881:3702-3721 | Msa1457400:intron | 20.0% |
| !! | TTGAAATTATGCACTAAATA+AGG | + | tig0038881:3932-3951 | Msa1457400:intron | 20.0% |
| !!! | TAAGAAATTGTGGTATTTTA+GGG | - | tig0038881:3983-4002 | Msa1457400:intergenic | 20.0% |
| !! | AGAATATATGTAAGAAATTG+TGG | - | tig0038881:3993-4012 | Msa1457400:intergenic | 20.0% |
| !!! | CAGTAAATTTTAGTATTATG+AGG | + | tig0038881:4084-4103 | Msa1457400:intron | 20.0% |
| !! | TATTCATTATATATAGCAAC+AGG | + | tig0038881:4114-4133 | Msa1457400:intron | 20.0% |
| !! | ATTCATTATATATAGCAACA+GGG | + | tig0038881:4115-4134 | Msa1457400:intron | 20.0% |
| ! | GGTAGTAATTGAACTAATTA+AGG | + | tig0038881:1680-1699 | Msa1457400:intron | 25.0% |
| ! | AATGATATTTATGAGTGAGT+GGG | - | tig0038881:1709-1728 | Msa1457400:intergenic | 25.0% |
| ! | TAATGATATTTATGAGTGAG+TGG | - | tig0038881:1710-1729 | Msa1457400:intergenic | 25.0% |
| !!! | ATAAGTTTTAGATTGAAGGT+GGG | - | tig0038881:1739-1758 | Msa1457400:intergenic | 25.0% |
| !!! | GTAGATAAGTTTTAGATTGA+AGG | - | tig0038881:1743-1762 | Msa1457400:intergenic | 25.0% |
| ! | ATTCAGAAAGATTAGGAATA+CGG | + | tig0038881:1882-1901 | Msa1457400:intron | 25.0% |
| ! | GATAAAATTACCTATTCATC+TGG | + | tig0038881:2008-2027 | Msa1457400:CDS | 25.0% |
| ! | CATTAATTAAAGTTTCCACA+AGG | - | tig0038881:2038-2057 | Msa1457400:intergenic | 25.0% |
| !! | TGTACAAGCATCAAATATTT+TGG | - | tig0038881:2209-2228 | Msa1457400:intergenic | 25.0% |
| ! | AATATTTGATGCTTGTACAT+TGG | + | tig0038881:2210-2229 | Msa1457400:CDS | 25.0% |
| ! | TCCCATATGGTTATATATTT+AGG | + | tig0038881:2392-2411 | Msa1457400:intron | 25.0% |
| ! | CCCTAAATATATAACCATAT+GGG | - | tig0038881:2396-2415 | Msa1457400:intergenic | 25.0% |
| ! | CCCATATGGTTATATATTTA+GGG | + | tig0038881:2393-2412 | Msa1457400:intron | 25.0% |
| ! | ACCCTAAATATATAACCATA+TGG | - | tig0038881:2397-2416 | Msa1457400:intergenic | 25.0% |
| !!! | CAAAATTTTCCTTAGTTTTC+TGG | - | tig0038881:2451-2470 | Msa1457400:intergenic | 25.0% |
| !!! | GAATTATGCAGAGTTATTTT+CGG | - | tig0038881:3045-3064 | Msa1457400:intergenic | 25.0% |
| ! | TGAGTAGATTATATAAACCA+AGG | - | tig0038881:3246-3265 | Msa1457400:intergenic | 25.0% |
| ! | TGAAAAAACTTGGAACAATT+AGG | - | tig0038881:3425-3444 | Msa1457400:intergenic | 25.0% |
| !! | TTTCAATTTTCAGATAGACT+CGG | + | tig0038881:3440-3459 | Msa1457400:intron | 25.0% |
| ! | ACAATATCATGGTTTATAAG+CGG | + | tig0038881:3634-3653 | Msa1457400:intron | 25.0% |
| ! | ACATTCGTTTATTCTTTCAT+CGG | + | tig0038881:3777-3796 | Msa1457400:intron | 25.0% |
| !! | TTTTGATGTCAAAAGAAAGA+GGG | - | tig0038881:3868-3887 | Msa1457400:intergenic | 25.0% |
| !!! | ATTTTGATGTCAAAAGAAAG+AGG | - | tig0038881:3869-3888 | Msa1457400:intergenic | 25.0% |
| !! | GTAAGAAATTGTGGTATTTT+AGG | - | tig0038881:3984-4003 | Msa1457400:intergenic | 25.0% |
| ! | GTACATTAATGACATATACT+TGG | + | tig0038881:4223-4242 | Msa1457400:CDS | 25.0% |
| !!! | AGTTTGATTTTGTAGATACA+GGG | - | tig0038881:4280-4299 | Msa1457400:intergenic | 25.0% |
| !!! | AAGTTTGATTTTGTAGATAC+AGG | - | tig0038881:4281-4300 | Msa1457400:intergenic | 25.0% |
| ! | TTCAAATAAAGATGGCTATT+TGG | - | tig0038881:4314-4333 | Msa1457400:intergenic | 25.0% |
| ! | TATGTCACATATAAAGATCA+AGG | + | tig0038881:4457-4476 | Msa1457400:three_prime_UTR | 25.0% |
| ! | AGAATTACAACTCAGTTTTG+AGG | - | tig0038881:1169-1188 | Msa1457400:intergenic | 30.0% |
| ! | TCAACTGATGATGAATATAG+CGG | + | tig0038881:1337-1356 | Msa1457400:CDS | 30.0% |
| ! | ATTAATGGATCACCCTATTA+TGG | + | tig0038881:1372-1391 | Msa1457400:CDS | 30.0% |
| AGGTAGTAGAATCCATAATA+GGG | - | tig0038881:1387-1406 | Msa1457400:intergenic | 30.0% | |
| AAGGTAGTAGAATCCATAAT+AGG | - | tig0038881:1388-1407 | Msa1457400:intergenic | 30.0% | |
| ! | AGAAATTGAAGGTGTAAGAA+TGG | - | tig0038881:1416-1435 | Msa1457400:intergenic | 30.0% |
| TTACACCTTCAATTTCTAAC+TGG | + | tig0038881:1419-1438 | Msa1457400:CDS | 30.0% | |
| TGTTTCCAGTTAGAAATTGA+AGG | - | tig0038881:1427-1446 | Msa1457400:intergenic | 30.0% | |
| AATTTCTAACTGGAAACAAC+AGG | + | tig0038881:1429-1448 | Msa1457400:CDS | 30.0% | |
| TTGTGTATGTGTATCTTGTT+TGG | + | tig0038881:1501-1520 | Msa1457400:intron | 30.0% | |
| TGAAAAAGGATCAGATCTAT+TGG | - | tig0038881:1658-1677 | Msa1457400:intergenic | 30.0% | |
| !! | ATAGATCTGATCCTTTTTCA+TGG | + | tig0038881:1658-1677 | Msa1457400:intron | 30.0% |
| !! | TAGATCTGATCCTTTTTCAT+GGG | + | tig0038881:1659-1678 | Msa1457400:intron | 30.0% |
| TCAATTACTACCCATGAAAA+AGG | - | tig0038881:1672-1691 | Msa1457400:intergenic | 30.0% | |
| !!! | GATAAGTTTTAGATTGAAGG+TGG | - | tig0038881:1740-1759 | Msa1457400:intergenic | 30.0% |
| TTCTTAGATGCTAAATGATC+AGG | - | tig0038881:1838-1857 | Msa1457400:intergenic | 30.0% | |
| TCGAGTTATTCAGAAAGATT+AGG | + | tig0038881:1875-1894 | Msa1457400:intron | 30.0% | |
| TTGAATCAACATTGTCTTGT+AGG | + | tig0038881:1969-1988 | Msa1457400:intron | 30.0% | |
| TGAATCAACATTGTCTTGTA+GGG | + | tig0038881:1970-1989 | Msa1457400:intron | 30.0% | |
| AATTAAAGTTTCCACAAGGT+TGG | - | tig0038881:2034-2053 | Msa1457400:intergenic | 30.0% | |
| !!! | TCAAATATTTTGGTTCTGCA+TGG | - | tig0038881:2199-2218 | Msa1457400:intergenic | 30.0% |
| AGAAAGTAAAGCTAGAAACT+AGG | + | tig0038881:2720-2739 | Msa1457400:intron | 30.0% | |
| AACTCTGCATAATTCTGAAT+TGG | + | tig0038881:3050-3069 | Msa1457400:intron | 30.0% | |
| CTCATTTCCTAGTTATCAAA+TGG | + | tig0038881:3089-3108 | Msa1457400:intron | 30.0% | |
| ! | AGAAAAAACTGGACATTTTC+AGG | + | tig0038881:3132-3151 | Msa1457400:CDS | 30.0% |
| ! | GAAAAAACTGGACATTTTCA+GGG | + | tig0038881:3133-3152 | Msa1457400:CDS | 30.0% |
| ! | TTCATTTTGTGTGTTGGAAA+AGG | + | tig0038881:3514-3533 | Msa1457400:intron | 30.0% |
| !! | AGCTTACAATTTTGATAACC+AGG | + | tig0038881:3749-3768 | Msa1457400:intron | 30.0% |
| AATAAACGAATGTGAATTCC+TGG | - | tig0038881:3770-3789 | Msa1457400:intergenic | 30.0% | |
| ! | TTCTTTTGACATCAAAATCC+AGG | + | tig0038881:3871-3890 | Msa1457400:CDS | 30.0% |
| ! | TTCTTTTCATTACTTCGCAT+TGG | + | tig0038881:4009-4028 | Msa1457400:intron | 30.0% |
| !!! | ATTGGAAAGTCTCTTTTTTC+TGG | + | tig0038881:4027-4046 | Msa1457400:intron | 30.0% |
| ! | ACCTCATACTTTTCCATAAA+TGG | - | tig0038881:4197-4216 | Msa1457400:intergenic | 30.0% |
| ATATACTTGGCAAAGATTGA+TGG | + | tig0038881:4236-4255 | Msa1457400:CDS | 30.0% | |
| ! | AAGATTGATGGACATTATTC+TGG | + | tig0038881:4248-4267 | Msa1457400:CDS | 30.0% |
| !! | GTTTGATTTTGTAGATACAG+GGG | - | tig0038881:4279-4298 | Msa1457400:intergenic | 30.0% |
| ACAATGAATTACTCCTCTTA+AGG | - | tig0038881:4346-4365 | Msa1457400:intergenic | 30.0% | |
| ATCAAGGATATGAACATAAG+TGG | + | tig0038881:4473-4492 | Msa1457400:three_prime_UTR | 30.0% | |
| TGGAAGCAATAAAACAGTTT+GGG | + | tig0038881:4493-4512 | Msa1457400:three_prime_UTR | 30.0% | |
| !! | TATATTGCTATTTGCTGCTG+CGG | + | tig0038881:1096-1115 | Msa1457400:five_prime_UTR | 35.0% |
| !! | CGGTGTTATCGTAGAATTAA+TGG | + | tig0038881:1357-1376 | Msa1457400:CDS | 35.0% |
| AGGTGTAAGAATGGATAAGA+AGG | - | tig0038881:1407-1426 | Msa1457400:intergenic | 35.0% | |
| ATGCTAAATGATCAGGAAAC+TGG | - | tig0038881:1831-1850 | Msa1457400:intergenic | 35.0% | |
| TAGGAATACGGAACAAAACT+TGG | + | tig0038881:1894-1913 | Msa1457400:intron | 35.0% | |
| AGGAATACGGAACAAAACTT+GGG | + | tig0038881:1895-1914 | Msa1457400:intron | 35.0% | |
| ACAAAACTTGGGTCTCAATA+AGG | + | tig0038881:1906-1925 | Msa1457400:intron | 35.0% | |
| CAAAACTTGGGTCTCAATAA+GGG | + | tig0038881:1907-1926 | Msa1457400:intron | 35.0% | |
| AAATGACAAGTTAGTACGCA+AGG | - | tig0038881:2121-2140 | Msa1457400:intergenic | 35.0% | |
| !! | GCTTGATCAGAAGCATTATT+AGG | + | tig0038881:2549-2568 | Msa1457400:intron | 35.0% |
| ATCCAGATAACTTTCTACGT+AGG | + | tig0038881:2685-2704 | Msa1457400:intron | 35.0% | |
| TTCTACGTAGGTGTGTATAA+AGG | + | tig0038881:2697-2716 | Msa1457400:intron | 35.0% | |
| AAACTAGGAATCTTTACCTC+AGG | + | tig0038881:2735-2754 | Msa1457400:intron | 35.0% | |
| ! | CCTAACACCATTTGATAACT+AGG | - | tig0038881:3099-3118 | Msa1457400:intergenic | 35.0% |
| CCTAGTTATCAAATGGTGTT+AGG | + | tig0038881:3096-3115 | Msa1457400:intron | 35.0% | |
| CTAGTGCTTCAAGAAAAAAC+TGG | + | tig0038881:3121-3140 | Msa1457400:CDS | 35.0% | |
| TAGTAGAAGAAGCTATTCCT+TGG | + | tig0038881:3226-3245 | Msa1457400:intron | 35.0% | |
| AGGAGTAAGTAATCTCTTTG+CGG | + | tig0038881:3324-3343 | Msa1457400:CDS | 35.0% | |
| ATGTCTAGTGCACATTCAAT+AGG | - | tig0038881:3352-3371 | Msa1457400:intergenic | 35.0% | |
| TGCACTAGACATGAACTTAT+TGG | + | tig0038881:3360-3379 | Msa1457400:intron | 35.0% | |
| AATTAGGCTTAGAATCACGT+TGG | - | tig0038881:3409-3428 | Msa1457400:intergenic | 35.0% | |
| !! | TTGTGGAAGTATTAGCATTC+AGG | + | tig0038881:3466-3485 | Msa1457400:CDS | 35.0% |
| GTGCACCAATAACAATATCA+TGG | + | tig0038881:3623-3642 | Msa1457400:intron | 35.0% | |
| ACTTCTCAAAGAATGTCATG+TGG | - | tig0038881:3817-3836 | Msa1457400:intergenic | 35.0% | |
| ! | TTTTGACATCAAAATCCAGG+AGG | + | tig0038881:3874-3893 | Msa1457400:CDS | 35.0% |
| TTAATTGTTATGTGCTGCAG+TGG | + | tig0038881:4144-4163 | Msa1457400:intron | 35.0% | |
| TGAGCTGCATATTCATCAAA+TGG | - | tig0038881:4173-4192 | Msa1457400:intergenic | 35.0% | |
| ! | GCCATTTATGGAAAAGTATG+AGG | + | tig0038881:4193-4212 | Msa1457400:CDS | 35.0% |
| !! | TGGAAAAGTATGAGGTTTTG+AGG | + | tig0038881:4201-4220 | Msa1457400:CDS | 35.0% |
| AATAAAGATGGCTATTTGGC+TGG | - | tig0038881:4310-4329 | Msa1457400:intergenic | 35.0% | |
| ! | AGCCATCTTTATTTGAATGC+TGG | + | tig0038881:4317-4336 | Msa1457400:CDS | 35.0% |
| CTCCAGCATTCAAATAAAGA+TGG | - | tig0038881:4322-4341 | Msa1457400:intergenic | 35.0% | |
| ! | CATCTTTATTTGAATGCTGG+AGG | + | tig0038881:4320-4339 | Msa1457400:CDS | 35.0% |
| GTGGAAGCAATAAAACAGTT+TGG | + | tig0038881:4492-4511 | Msa1457400:three_prime_UTR | 35.0% | |
| GATAGTAGTTTAGTGTTGTC+TGG | - | tig0038881:4534-4553 | Msa1457400:intergenic | 35.0% | |
| GTAGAGTAAGACATTGTTGT+GGG | - | tig0038881:4586-4605 | Msa1457400:intergenic | 35.0% | |
| AGTAGAGTAAGACATTGTTG+TGG | - | tig0038881:4587-4606 | Msa1457400:intergenic | 35.0% | |
| !! | ATATTGCTATTTGCTGCTGC+GGG | + | tig0038881:1097-1116 | Msa1457400:five_prime_UTR | 40.0% |
| TTGAGCTTCTTCTTCTGTTG+AGG | - | tig0038881:1302-1321 | Msa1457400:intergenic | 40.0% | |
| TCTAACTGGAAACAACAGGT+AGG | + | tig0038881:1433-1452 | Msa1457400:intron | 40.0% | |
| ATTGTCTTGTAGGGCAAGAA+GGG | + | tig0038881:1979-1998 | Msa1457400:intron | 40.0% | |
| TATCTGTCACAATTCTGTGC+AGG | + | tig0038881:2157-2176 | Msa1457400:intron | 40.0% | |
| ! | ATTCTGTGCAGGAAGGTTTT+TGG | + | tig0038881:2168-2187 | Msa1457400:intron | 40.0% |
| TGTGGTGAATGATAAACGAG+AGG | + | tig0038881:2295-2314 | Msa1457400:CDS | 40.0% | |
| GATCAGGTTTCTGCACAATT+TGG | + | tig0038881:2357-2376 | Msa1457400:intron | 40.0% | |
| GCATTATTAGGTGAGTCCTA+TGG | + | tig0038881:2561-2580 | Msa1457400:intron | 40.0% | |
| CACCTACGTAGAAAGTTATC+TGG | - | tig0038881:2690-2709 | Msa1457400:intergenic | 40.0% | |
| AGATGGCTGTCCCTTTATTA+TGG | + | tig0038881:2782-2801 | Msa1457400:intron | 40.0% | |
| GATGGCTGTCCCTTTATTAT+GGG | + | tig0038881:2783-2802 | Msa1457400:intron | 40.0% | |
| AGATCACATAGGAAGACAGA+TGG | - | tig0038881:2983-3002 | Msa1457400:intergenic | 40.0% | |
| ! | GTACTGACAACAGATCACAT+AGG | - | tig0038881:2994-3013 | Msa1457400:intergenic | 40.0% |
| ATTTACCTGATCAGCAACTC+CGG | - | tig0038881:3182-3201 | Msa1457400:intergenic | 40.0% | |
| TAATCTACTCATTCTGCTGC+AGG | + | tig0038881:3255-3274 | Msa1457400:intron | 40.0% | |
| AATCTACTCATTCTGCTGCA+GGG | + | tig0038881:3256-3275 | Msa1457400:intron | 40.0% | |
| AGAGAGGTCAAAGAAGAAAC+AGG | + | tig0038881:3304-3323 | Msa1457400:CDS | 40.0% | |
| TCAGATAGACTCGGAATTTG+TGG | + | tig0038881:3449-3468 | Msa1457400:intron | 40.0% | |
| !! | TGGAAGTATTAGCATTCAGG+TGG | + | tig0038881:3469-3488 | Msa1457400:intron | 40.0% |
| !! | GGAAGTATTAGCATTCAGGT+GGG | + | tig0038881:3470-3489 | Msa1457400:intron | 40.0% |
| AGGAAGTTCCAAACTTCCAA+TGG | + | tig0038881:3534-3553 | Msa1457400:intron | 40.0% | |
| ATGTTCAGCCATTGGAAGTT+TGG | - | tig0038881:3545-3564 | Msa1457400:intergenic | 40.0% | |
| AAACTTCCAATGGCTGAACA+TGG | + | tig0038881:3544-3563 | Msa1457400:intron | 40.0% | |
| AACGTGACCAAGCAAAAACA+AGG | - | tig0038881:3575-3594 | Msa1457400:intergenic | 40.0% | |
| ATATGCAGCTCAGCCATTTA+TGG | + | tig0038881:4181-4200 | Msa1457400:CDS | 40.0% | |
| TTGTTGTGGGACAAAATTCC+AGG | - | tig0038881:4573-4592 | Msa1457400:intergenic | 40.0% | |
| ACTGGAAACAACAGGTAGGT+AGG | + | tig0038881:1437-1456 | Msa1457400:intron | 45.0% | |
| CTAGTGACAATTTCCAGCAC+AGG | - | tig0038881:1941-1960 | Msa1457400:intergenic | 45.0% | |
| CATTGTCTTGTAGGGCAAGA+AGG | + | tig0038881:1978-1997 | Msa1457400:intron | 45.0% | |
| ! | ACAAGGTTGGCCAGATGAAT+AGG | - | tig0038881:2021-2040 | Msa1457400:intergenic | 45.0% |
| TATTCATCTGGCCAACCTTG+TGG | + | tig0038881:2020-2039 | Msa1457400:CDS | 45.0% | |
| TGTCACAATTCTGTGCAGGA+AGG | + | tig0038881:2161-2180 | Msa1457400:intron | 45.0% | |
| TGTGCAGAAACCTGATCATG+TGG | - | tig0038881:2354-2373 | Msa1457400:intergenic | 45.0% | |
| GAAGCACAAACACTCCCATA+TGG | + | tig0038881:2379-2398 | Msa1457400:intron | 45.0% | |
| !! | CTTAGTTTTCTGGTCACGCT+AGG | - | tig0038881:2441-2460 | Msa1457400:intergenic | 45.0% |
| CTAGCGTGACCAGAAAACTA+AGG | + | tig0038881:2439-2458 | Msa1457400:intron | 45.0% | |
| ACAAGCGAAACAAGCTCATG+AGG | + | tig0038881:2497-2516 | Msa1457400:intron | 45.0% | |
| GTCCTATGGATACACAACTC+CGG | + | tig0038881:2575-2594 | Msa1457400:intron | 45.0% | |
| TATGGATACACAACTCCGGT+GGG | + | tig0038881:2579-2598 | Msa1457400:intron | 45.0% | |
| GGAAACCTTTACCGTTCTTC+AGG | - | tig0038881:2607-2626 | Msa1457400:intergenic | 45.0% | |
| CACACTCCCATATGGTTAGA+TGG | + | tig0038881:2765-2784 | Msa1457400:intron | 45.0% | |
| GGACAGCCATCTAACCATAT+GGG | - | tig0038881:2774-2793 | Msa1457400:intergenic | 45.0% | |
| !! | ACTGGACATTTTCAGGGAAC+TGG | + | tig0038881:3139-3158 | Msa1457400:CDS | 45.0% |
| !! | ATTTTCAGGGAACTGGATCC+TGG | + | tig0038881:3146-3165 | Msa1457400:CDS | 45.0% |
| GGATCCTGGAAATTTCCTAC+CGG | + | tig0038881:3160-3179 | Msa1457400:CDS | 45.0% | |
| AACTCCGGTAGGAAATTTCC+AGG | - | tig0038881:3167-3186 | Msa1457400:intergenic | 45.0% | |
| !!! | TCACGTTGGTTCTTTTGTCG+TGG | - | tig0038881:3395-3414 | Msa1457400:intergenic | 45.0% |
| !!! | GGAGAGTCCTTGTTTTTGCT+TGG | + | tig0038881:3565-3584 | Msa1457400:intron | 45.0% |
| GGTAGAGATAGAAGCTGCAA+AGG | + | tig0038881:3895-3914 | Msa1457400:CDS | 45.0% | |
| ! | TCCTGTCTCTTTTGTACACC+TGG | + | tig0038881:4552-4571 | Msa1457400:three_prime_UTR | 45.0% |
| TCCAGGTGTACAAAAGAGAC+AGG | - | tig0038881:4556-4575 | Msa1457400:intergenic | 45.0% | |
| AAGGGACAGTTTACCTGTGC+TGG | + | tig0038881:1925-1944 | Msa1457400:intron | 50.0% | |
| !! | TGTAGGGCAAGAAGGGTGTT+TGG | + | tig0038881:1986-2005 | Msa1457400:intron | 50.0% |
| GTGTGTGGCATTTGCAGGAA+TGG | - | tig0038881:2255-2274 | Msa1457400:intergenic | 50.0% | |
| CAAACGCTCCAATACCCACT+CGG | - | tig0038881:2277-2296 | Msa1457400:intergenic | 50.0% | |
| !! | AGTGGGTATTGGAGCGTTTG+TGG | + | tig0038881:2277-2296 | Msa1457400:CDS | 50.0% |
| TGCAGAGCAACCACATGATC+AGG | + | tig0038881:2341-2360 | Msa1457400:intron | 50.0% | |
| CACCGGAGTTGTGTATCCAT+AGG | - | tig0038881:2580-2599 | Msa1457400:intergenic | 50.0% | |
| CTATGGATACACAACTCCGG+TGG | + | tig0038881:2578-2597 | Msa1457400:intron | 50.0% | |
| GGGTTCCTGAAGAACGGTAA+AGG | + | tig0038881:2599-2618 | Msa1457400:intron | 50.0% | |
| GAAGCACACACACTCCCATA+TGG | + | tig0038881:2757-2776 | Msa1457400:intron | 50.0% | |
| GGGACAGCCATCTAACCATA+TGG | - | tig0038881:2775-2794 | Msa1457400:intergenic | 50.0% | |
| TTGTGCAGCAGCAGTAAGAG+AGG | + | tig0038881:3288-3307 | Msa1457400:CDS | 50.0% | |
| GACTCTCCATGTTCAGCCAT+TGG | - | tig0038881:3553-3572 | Msa1457400:intergenic | 50.0% | |
| AGCGGTCAGATAATACGTGC+TGG | + | tig0038881:3652-3671 | Msa1457400:intron | 50.0% | |
| CAGCTTCTATCTCTACCTCC+TGG | - | tig0038881:3892-3911 | Msa1457400:intergenic | 50.0% | |
| TGAATGCTGGAGGCCTTAAG+AGG | + | tig0038881:4330-4349 | Msa1457400:CDS | 50.0% | |
| !! | TTGCTATTTGCTGCTGCGGG+AGG | + | tig0038881:1100-1119 | Msa1457400:five_prime_UTR | 55.0% |
| !! | ACTCGGTGTGTGGCATTTGC+AGG | - | tig0038881:2260-2279 | Msa1457400:intergenic | 55.0% |
| TGCAAATGCCACACACCGAG+TGG | + | tig0038881:2259-2278 | Msa1457400:CDS | 55.0% | |
| GCAAATGCCACACACCGAGT+GGG | + | tig0038881:2260-2279 | Msa1457400:CDS | 55.0% | |
| !! | TCCAATACCCACTCGGTGTG+TGG | - | tig0038881:2270-2289 | Msa1457400:intergenic | 55.0% |
| ! | TCCGGTGGGTTCCTGAAGAA+CGG | + | tig0038881:2593-2612 | Msa1457400:intron | 55.0% |
| ACCGTTCTTCAGGAACCCAC+CGG | - | tig0038881:2597-2616 | Msa1457400:intergenic | 55.0% | |
| TCCTACCGGAGTTGCTGATC+AGG | + | tig0038881:3174-3193 | Msa1457400:CDS | 55.0% | |
| ACCTGATCAGCAACTCCGGT+AGG | - | tig0038881:3178-3197 | Msa1457400:intergenic | 55.0% | |
| GCCACACACCGAGTGGGTAT+TGG | + | tig0038881:2266-2285 | Msa1457400:CDS | 60.0% | |
| ! | GGGAGTGTGTGTGCTTCCTG+AGG | - | tig0038881:2754-2773 | Msa1457400:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0038881 | gene | 1090 | 4621 | 1090 | ID=Msa1457400;Name=Msa1457400 |
| tig0038881 | mRNA | 1090 | 4621 | 1090 | ID=Msa1457400-mRNA-1;Parent=Msa1457400;Name=Msa1457400-mRNA-1;_AED=0.25;_eAED=0.25;_QI=100|0.87|0.88|1|0.87|0.77|9|254|285 |
| tig0038881 | exon | 1090 | 1180 | 1090 | ID=Msa1457400-mRNA-1:exon:21118;Parent=Msa1457400-mRNA-1 |
| tig0038881 | exon | 1283 | 1450 | 1283 | ID=Msa1457400-mRNA-1:exon:21119;Parent=Msa1457400-mRNA-1 |
| tig0038881 | exon | 1991 | 2056 | 1991 | ID=Msa1457400-mRNA-1:exon:21120;Parent=Msa1457400-mRNA-1 |
| tig0038881 | exon | 2179 | 2316 | 2179 | ID=Msa1457400-mRNA-1:exon:21121;Parent=Msa1457400-mRNA-1 |
| tig0038881 | exon | 3118 | 3195 | 3118 | ID=Msa1457400-mRNA-1:exon:21122;Parent=Msa1457400-mRNA-1 |
| tig0038881 | exon | 3277 | 3345 | 3277 | ID=Msa1457400-mRNA-1:exon:21123;Parent=Msa1457400-mRNA-1 |
| tig0038881 | exon | 3453 | 3487 | 3453 | ID=Msa1457400-mRNA-1:exon:21124;Parent=Msa1457400-mRNA-1 |
| tig0038881 | exon | 3808 | 3916 | 3808 | ID=Msa1457400-mRNA-1:exon:21125;Parent=Msa1457400-mRNA-1 |
| tig0038881 | exon | 4164 | 4621 | 4164 | ID=Msa1457400-mRNA-1:exon:21126;Parent=Msa1457400-mRNA-1 |
| tig0038881 | five_prime_UTR | 1090 | 1180 | 1090 | ID=Msa1457400-mRNA-1:five_prime_utr;Parent=Msa1457400-mRNA-1 |
| tig0038881 | five_prime_UTR | 1283 | 1291 | 1283 | ID=Msa1457400-mRNA-1:five_prime_utr;Parent=Msa1457400-mRNA-1 |
| tig0038881 | CDS | 1292 | 1450 | 1292 | ID=Msa1457400-mRNA-1:cds;Parent=Msa1457400-mRNA-1 |
| tig0038881 | CDS | 1991 | 2056 | 1991 | ID=Msa1457400-mRNA-1:cds;Parent=Msa1457400-mRNA-1 |
| tig0038881 | CDS | 2179 | 2316 | 2179 | ID=Msa1457400-mRNA-1:cds;Parent=Msa1457400-mRNA-1 |
| tig0038881 | CDS | 3118 | 3195 | 3118 | ID=Msa1457400-mRNA-1:cds;Parent=Msa1457400-mRNA-1 |
| tig0038881 | CDS | 3277 | 3345 | 3277 | ID=Msa1457400-mRNA-1:cds;Parent=Msa1457400-mRNA-1 |
| tig0038881 | CDS | 3453 | 3487 | 3453 | ID=Msa1457400-mRNA-1:cds;Parent=Msa1457400-mRNA-1 |
| tig0038881 | CDS | 3808 | 3916 | 3808 | ID=Msa1457400-mRNA-1:cds;Parent=Msa1457400-mRNA-1 |
| tig0038881 | CDS | 4164 | 4367 | 4164 | ID=Msa1457400-mRNA-1:cds;Parent=Msa1457400-mRNA-1 |
| tig0038881 | three_prime_UTR | 4368 | 4621 | 4368 | ID=Msa1457400-mRNA-1:three_prime_utr;Parent=Msa1457400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
