Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1389160 | XP_013458657.1 | 95.439 | 285 | 6 | 2 | 1 | 285 | 1 | 278 | 0.0 | 560 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1389160 | sp|Q94B74|NUDT2_ARATH | 55.709 | 289 | 111 | 5 | 1 | 283 | 1 | 278 | 4.11e-109 | 320 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1389160 | A0A072US93 | 95.439 | 285 | 6 | 2 | 1 | 285 | 1 | 278 | 0.0 | 560 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1389160 | Msa1457400 | 0.876714 | 1.120700e-68 | -8.615850e-47 |
Msa1332480 | Msa1389160 | 0.989520 | 1.782781e-178 | -8.615850e-47 |
Msa1333760 | Msa1389160 | 0.976216 | 2.100910e-141 | -8.615850e-47 |
Msa1224430 | Msa1389160 | 0.992902 | 3.635780e-196 | -8.615850e-47 |
Msa0953150 | Msa1389160 | 0.810204 | 1.294990e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1389160 | MtrunA17_Chr4g0076351 | 95.439 | 285 | 6 | 2 | 1 | 285 | 1 | 278 | 0.0 | 560 |
Msa1389160 | MtrunA17_Chr2g0290501 | 71.479 | 284 | 69 | 5 | 4 | 284 | 59 | 333 | 1.75e-146 | 414 |
Msa1389160 | MtrunA17_Chr3g0102431 | 57.509 | 273 | 107 | 3 | 11 | 283 | 23 | 286 | 8.26e-110 | 319 |
Msa1389160 | MtrunA17_Chr8g0383231 | 56.107 | 262 | 105 | 3 | 14 | 275 | 19 | 270 | 1.79e-101 | 298 |
Msa1389160 | MtrunA17_Chr3g0120821 | 52.852 | 263 | 113 | 4 | 13 | 275 | 80 | 331 | 1.68e-99 | 295 |
Msa1389160 | MtrunA17_Chr4g0055811 | 45.788 | 273 | 140 | 3 | 13 | 285 | 91 | 355 | 4.73e-82 | 251 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1389160 | AT5G47650.5 | 55.709 | 289 | 111 | 5 | 1 | 283 | 1 | 278 | 4.18e-110 | 320 |
Msa1389160 | AT5G47650.3 | 55.709 | 289 | 111 | 5 | 1 | 283 | 1 | 278 | 4.18e-110 | 320 |
Msa1389160 | AT5G47650.1 | 55.709 | 289 | 111 | 5 | 1 | 283 | 1 | 278 | 4.18e-110 | 320 |
Msa1389160 | AT5G47650.4 | 56.679 | 277 | 109 | 4 | 7 | 283 | 59 | 324 | 3.58e-109 | 319 |
Msa1389160 | AT5G47650.2 | 56.679 | 277 | 109 | 4 | 7 | 283 | 60 | 325 | 4.31e-109 | 319 |
Msa1389160 | AT4G25434.10 | 53.759 | 266 | 110 | 5 | 12 | 275 | 18 | 272 | 3.11e-95 | 282 |
Msa1389160 | AT4G25434.8 | 50.523 | 287 | 114 | 6 | 12 | 275 | 18 | 299 | 2.80e-93 | 278 |
Msa1389160 | AT4G25434.1 | 52.632 | 266 | 108 | 6 | 12 | 275 | 18 | 267 | 3.20e-90 | 269 |
Msa1389160 | AT4G12720.2 | 50.000 | 274 | 125 | 5 | 10 | 281 | 7 | 270 | 1.29e-88 | 265 |
Msa1389160 | AT4G12720.3 | 50.000 | 274 | 125 | 5 | 10 | 281 | 7 | 270 | 1.29e-88 | 265 |
Msa1389160 | AT4G12720.1 | 50.000 | 274 | 125 | 5 | 10 | 281 | 7 | 270 | 1.29e-88 | 265 |
Msa1389160 | AT4G25434.2 | 49.477 | 287 | 112 | 7 | 12 | 275 | 18 | 294 | 2.88e-88 | 265 |
Msa1389160 | AT4G25434.7 | 58.937 | 207 | 77 | 3 | 12 | 218 | 18 | 216 | 8.43e-83 | 248 |
Msa1389160 | AT5G47240.1 | 47.842 | 278 | 129 | 6 | 1 | 275 | 86 | 350 | 8.10e-82 | 251 |
Msa1389160 | AT4G25434.6 | 54.825 | 228 | 80 | 4 | 12 | 218 | 18 | 243 | 3.93e-81 | 245 |
Msa1389160 | AT2G04450.1 | 48.529 | 272 | 127 | 6 | 7 | 275 | 4 | 265 | 1.06e-80 | 245 |
Msa1389160 | AT4G12720.4 | 43.631 | 314 | 125 | 6 | 10 | 281 | 7 | 310 | 1.26e-80 | 246 |
Msa1389160 | AT2G04430.2 | 48.193 | 249 | 120 | 3 | 10 | 255 | 7 | 249 | 9.16e-78 | 238 |
Msa1389160 | AT4G25434.9 | 57.488 | 207 | 75 | 4 | 12 | 218 | 18 | 211 | 9.87e-78 | 235 |
Msa1389160 | AT2G04430.1 | 48.193 | 249 | 120 | 3 | 10 | 255 | 26 | 268 | 1.97e-77 | 238 |
Msa1389160 | AT5G47240.2 | 43.322 | 307 | 129 | 7 | 1 | 275 | 86 | 379 | 1.74e-75 | 236 |
Msa1389160 | AT4G25434.3 | 55.122 | 205 | 81 | 3 | 73 | 275 | 32 | 227 | 3.23e-75 | 229 |
Msa1389160 | AT4G25434.5 | 55.122 | 205 | 81 | 3 | 73 | 275 | 32 | 227 | 3.23e-75 | 229 |
Msa1389160 | AT4G12720.5 | 53.555 | 211 | 88 | 4 | 10 | 218 | 7 | 209 | 5.06e-73 | 223 |
Msa1389160 | AT4G25434.4 | 53.659 | 205 | 79 | 4 | 73 | 275 | 32 | 222 | 6.09e-70 | 216 |
Msa1389160 | AT4G25434.13 | 49.524 | 210 | 80 | 4 | 89 | 275 | 1 | 207 | 7.66e-64 | 200 |
Msa1389160 | AT4G25434.12 | 55.429 | 175 | 70 | 3 | 7 | 181 | 13 | 179 | 4.92e-62 | 196 |
Msa1389160 | AT4G25434.11 | 50.510 | 196 | 74 | 4 | 7 | 181 | 13 | 206 | 4.09e-60 | 192 |
Msa1389160 | AT4G12720.6 | 48.205 | 195 | 91 | 4 | 89 | 281 | 1 | 187 | 7.42e-56 | 179 |
Msa1389160 | AT2G04440.1 | 43.269 | 208 | 104 | 3 | 7 | 201 | 4 | 210 | 6.42e-48 | 159 |
Find 70 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTACAAGCATCAAATATTT+TGG | 0.159229 | tig0021212:+115671 | None:intergenic |
TTCAAATAAAGATGGCTATT+TGG | 0.203005 | tig0021212:+113566 | None:intergenic |
AAGATTGATGGACATTATTC+TGG | 0.227648 | tig0021212:-113629 | Msa1389160:CDS |
ATATGCAGCTCAGCCATTTA+TGG | 0.279024 | tig0021212:-113696 | Msa1389160:CDS |
TTGTGGAAGTATTAGCATTC+AGG | 0.296467 | tig0021212:-114411 | Msa1389160:intron |
CGGTGTTATCGTAGAATTAA+TGG | 0.299809 | tig0021212:-116540 | Msa1389160:CDS |
TTACACCTTCAATTTCTAAC+TGG | 0.317897 | tig0021212:-116478 | Msa1389160:CDS |
GTGGAAGCAATAAAACAGTT+TGG | 0.339576 | tig0021212:-113385 | Msa1389160:three_prime_UTR |
GATAAAATTACCTATTCATC+TGG | 0.356295 | tig0021212:-115869 | Msa1389160:CDS |
ACAATGAATTACTCCTCTTA+AGG | 0.361763 | tig0021212:+113534 | None:intergenic |
GATAGTAGTTTAGTGTTGTC+TGG | 0.366743 | tig0021212:+113346 | None:intergenic |
ACTCGGTGTGTGGCATTTGC+AGG | 0.374095 | tig0021212:+115620 | None:intergenic |
GCCATTTATGGAAAAGTATG+AGG | 0.393678 | tig0021212:-113684 | Msa1389160:CDS |
TTGTTGTGGGACAAAATTCC+AGG | 0.396840 | tig0021212:+113307 | None:intergenic |
CAGCTTCTATCTCTACCTCC+TGG | 0.398995 | tig0021212:+113988 | None:intergenic |
TCCTACCGGAGTTGCTGATC+AGG | 0.409277 | tig0021212:-114703 | Msa1389160:intron |
TATTATAGTTACAATTCAAT+TGG | 0.413564 | tig0021212:+113453 | None:intergenic |
AATAAAGATGGCTATTTGGC+TGG | 0.419860 | tig0021212:+113570 | None:intergenic |
ACAAGGTTGGCCAGATGAAT+AGG | 0.422162 | tig0021212:+115859 | None:intergenic |
TGGAAGCAATAAAACAGTTT+GGG | 0.426111 | tig0021212:-113384 | Msa1389160:three_prime_UTR |
TGTAGGGCAAGAAGGGTGTT+TGG | 0.427765 | tig0021212:-115891 | Msa1389160:intron |
AATATTTGATGCTTGTACAT+TGG | 0.428434 | tig0021212:-115667 | Msa1389160:CDS |
AGCCATCTTTATTTGAATGC+TGG | 0.428650 | tig0021212:-113560 | Msa1389160:CDS |
GCCACACACCGAGTGGGTAT+TGG | 0.432566 | tig0021212:-115611 | Msa1389160:CDS |
AGAGAGGTCAAAGAAGAAAC+AGG | 0.434993 | tig0021212:-114573 | Msa1389160:CDS |
TGTTTCCAGTTAGAAATTGA+AGG | 0.439398 | tig0021212:+116473 | None:intergenic |
CATTGTCTTGTAGGGCAAGA+AGG | 0.454453 | tig0021212:-115899 | Msa1389160:intron |
TTGATCTTCTTCTTCTGTTG+AGG | 0.456043 | tig0021212:+116598 | None:intergenic |
TCAGATAGACTCGGAATTTG+TGG | 0.463019 | tig0021212:-114428 | Msa1389160:intron |
ATATACTTGGCAAAGATTGA+TGG | 0.464974 | tig0021212:-113641 | Msa1389160:CDS |
AAGGTAGTAGAATCCATGAT+AGG | 0.468658 | tig0021212:+116512 | None:intergenic |
AATTTCTAACTGGAAACAAC+AGG | 0.477830 | tig0021212:-116468 | Msa1389160:intron |
TGAATGCTGGAGGCCTTAAG+AGG | 0.480821 | tig0021212:-113547 | Msa1389160:CDS |
AATTAAAGTTTCCACAAGGT+TGG | 0.483065 | tig0021212:+115846 | None:intergenic |
AACTCCGGTAGGAAATTTCC+AGG | 0.487178 | tig0021212:+114713 | None:intergenic |
AGTGGGTATTGGAGCGTTTG+TGG | 0.488578 | tig0021212:-115600 | Msa1389160:CDS |
AGAAATTGAAGGTGTAAGAA+TGG | 0.490971 | tig0021212:+116484 | None:intergenic |
TGAGCTGCATATTCATCAAA+TGG | 0.494421 | tig0021212:+113707 | None:intergenic |
ATCAAGGATATGAACATAAG+TGG | 0.494948 | tig0021212:-113404 | Msa1389160:three_prime_UTR |
ATTAATGGATCACCCTATCA+TGG | 0.500732 | tig0021212:-116525 | Msa1389160:CDS |
TATATTGCTATTTGCTGCTG+CGG | 0.508453 | tig0021212:-116799 | Msa1389160:five_prime_UTR |
GTGTGTGGCATTTGCAGGAA+TGG | 0.522297 | tig0021212:+115625 | None:intergenic |
TATGTCACATATAAAGATCA+AGG | 0.525997 | tig0021212:-113420 | Msa1389160:three_prime_UTR |
TCCAGGTGTACAAAAGAGAC+AGG | 0.526090 | tig0021212:+113324 | None:intergenic |
CTCCAGCATTCAAATAAAGA+TGG | 0.531291 | tig0021212:+113558 | None:intergenic |
AGGTGTAAGAATGGATAAGA+AGG | 0.540844 | tig0021212:+116493 | None:intergenic |
ATATTGCTATTTGCTGCTGC+GGG | 0.542929 | tig0021212:-116798 | Msa1389160:five_prime_UTR |
TGCAAATGCCACACACCGAG+TGG | 0.544339 | tig0021212:-115618 | Msa1389160:CDS |
GTAGAGTAAGACATTGTTGT+GGG | 0.545467 | tig0021212:+113294 | None:intergenic |
GGTAGAGATAGAAGCTGCAA+AGG | 0.549918 | tig0021212:-113982 | Msa1389160:intron |
ATTGTCTTGTAGGGCAAGAA+GGG | 0.550569 | tig0021212:-115898 | Msa1389160:intron |
CATCTTTATTTGAATGCTGG+AGG | 0.553074 | tig0021212:-113557 | Msa1389160:CDS |
TATTCATCTGGCCAACCTTG+TGG | 0.553285 | tig0021212:-115857 | Msa1389160:CDS |
TCCAATACCCACTCGGTGTG+TGG | 0.564012 | tig0021212:+115610 | None:intergenic |
TTGTGCAGCAGCAGTAAGAG+AGG | 0.565131 | tig0021212:-114589 | Msa1389160:CDS |
AGGTAGTAGAATCCATGATA+GGG | 0.567767 | tig0021212:+116513 | None:intergenic |
AGGAGTAAGTAATCTCTTTG+CGG | 0.575207 | tig0021212:-114553 | Msa1389160:intron |
GTACATTAATGACATATACT+TGG | 0.579892 | tig0021212:-113654 | Msa1389160:CDS |
TTGCTATTTGCTGCTGCGGG+AGG | 0.587723 | tig0021212:-116795 | Msa1389160:five_prime_UTR |
ACCGCTATATTCATCATCAG+TGG | 0.604610 | tig0021212:+116559 | None:intergenic |
CATTAATTAAAGTTTCCACA+AGG | 0.606195 | tig0021212:+115842 | None:intergenic |
GGATCCTGGAAATTTCCTAC+CGG | 0.606581 | tig0021212:-114717 | Msa1389160:CDS |
ATTTACCTGATCAGCAACTC+CGG | 0.611010 | tig0021212:+114698 | None:intergenic |
AGTAGAGTAAGACATTGTTG+TGG | 0.635377 | tig0021212:+113293 | None:intergenic |
CAAACGCTCCAATACCCACT+CGG | 0.649930 | tig0021212:+115603 | None:intergenic |
ACCTGATCAGCAACTCCGGT+AGG | 0.652284 | tig0021212:+114702 | None:intergenic |
GCAAATGCCACACACCGAGT+GGG | 0.669457 | tig0021212:-115617 | Msa1389160:CDS |
ACTTCTCAAAGAATGTCATG+TGG | 0.686811 | tig0021212:+114063 | None:intergenic |
TGTGGTGAATGATAAACGAG+AGG | 0.692588 | tig0021212:-115582 | Msa1389160:intron |
TCCACTGATGATGAATATAG+CGG | 0.705890 | tig0021212:-116560 | Msa1389160:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTAATTTACTAACTCTAA+TGG | - | tig0021212:113653-113672 | Msa1389160:CDS | 15.0% |
!!! | AACTTTCTTATTTTGAAAAT+AGG | + | tig0021212:114834-114853 | None:intergenic | 15.0% |
!! | TATTATAGTTACAATTCAAT+TGG | + | tig0021212:116633-116652 | None:intergenic | 15.0% |
!! | CTTATCCTTAATCAATTTAA+AGG | - | tig0021212:113734-113753 | Msa1389160:intron | 20.0% |
!! | AGTATCCTTTAAATTGATTA+AGG | + | tig0021212:113742-113761 | None:intergenic | 20.0% |
!! | GTAGTAATTGAACTAATTAA+GGG | - | tig0021212:113887-113906 | Msa1389160:intron | 20.0% |
!! | TCAAAATAAGAAAGTTAACA+AGG | - | tig0021212:114838-114857 | Msa1389160:intron | 20.0% |
!! | ATTTCTATTCCCATAATAAA+GGG | + | tig0021212:115001-115020 | None:intergenic | 20.0% |
!! | AATTTCTATTCCCATAATAA+AGG | + | tig0021212:115002-115021 | None:intergenic | 20.0% |
!!! | AATGTTATTTCTATGTATCA+AGG | + | tig0021212:115101-115120 | None:intergenic | 20.0% |
!! | ATCTGAAAATTGAAAAAACT+TGG | + | tig0021212:115641-115660 | None:intergenic | 20.0% |
!!! | TAATATTTCATTTTGTGTGT+TGG | - | tig0021212:115714-115733 | Msa1389160:intron | 20.0% |
!! | ATAAACCATGATATTGTTAT+TGG | + | tig0021212:115837-115856 | None:intergenic | 20.0% |
!! | CAACAACTAAACAATAAAAT+CGG | + | tig0021212:115899-115918 | None:intergenic | 20.0% |
!! | TTTAGTTGTTGAAAAAATGT+AGG | - | tig0021212:115908-115927 | Msa1389160:intron | 20.0% |
!! | TTGAAATTATGCACTAAATA+AGG | - | tig0021212:116138-116157 | Msa1389160:intron | 20.0% |
!!! | TAAGAAATTGTGGTATTTTA+GGG | + | tig0021212:116189-116208 | None:intergenic | 20.0% |
!! | AGAATATATGTAAGAAATTG+TGG | + | tig0021212:116199-116218 | None:intergenic | 20.0% |
!!! | CAGTAAATTTTAGTATTATG+AGG | - | tig0021212:116290-116309 | Msa1389160:intron | 20.0% |
!! | TATTCATTATATATAGCAAC+AGG | - | tig0021212:116320-116339 | Msa1389160:intron | 20.0% |
!! | ATTCATTATATATAGCAACA+GGG | - | tig0021212:116321-116340 | Msa1389160:intron | 20.0% |
! | TGAAGTTCATGTTATTAGTT+AGG | - | tig0021212:113773-113792 | Msa1389160:intron | 25.0% |
! | ATGTTATTAGTTAGGCAATA+TGG | - | tig0021212:113781-113800 | Msa1389160:intron | 25.0% |
! | GGTAGTAATTGAACTAATTA+AGG | - | tig0021212:113886-113905 | Msa1389160:intron | 25.0% |
! | AATGATATTTATGAGTGAGT+GGG | + | tig0021212:113915-113934 | None:intergenic | 25.0% |
! | TAATGATATTTATGAGTGAG+TGG | + | tig0021212:113916-113935 | None:intergenic | 25.0% |
!!! | ATAAGTTTTAGATTGAAGGT+GGG | + | tig0021212:113945-113964 | None:intergenic | 25.0% |
!!! | GTAGATAAGTTTTAGATTGA+AGG | + | tig0021212:113949-113968 | None:intergenic | 25.0% |
! | TTCTTAGATGCTAAATAATC+AGG | + | tig0021212:114044-114063 | None:intergenic | 25.0% |
! | ATTCAGAAAGATTAGGAATA+CGG | - | tig0021212:114088-114107 | Msa1389160:intron | 25.0% |
! | GATAAAATTACCTATTCATC+TGG | - | tig0021212:114214-114233 | Msa1389160:intron | 25.0% |
! | CATTAATTAAAGTTTCCACA+AGG | + | tig0021212:114244-114263 | None:intergenic | 25.0% |
!! | TGTACAAGCATCAAATATTT+TGG | + | tig0021212:114415-114434 | None:intergenic | 25.0% |
! | AATATTTGATGCTTGTACAT+TGG | - | tig0021212:114416-114435 | Msa1389160:CDS | 25.0% |
! | TCCCATATGGTTATATATTT+AGG | - | tig0021212:114598-114617 | Msa1389160:CDS | 25.0% |
! | CCCTAAATATATAACCATAT+GGG | + | tig0021212:114602-114621 | None:intergenic | 25.0% |
! | CCCATATGGTTATATATTTA+GGG | - | tig0021212:114599-114618 | Msa1389160:CDS | 25.0% |
! | ACCCTAAATATATAACCATA+TGG | + | tig0021212:114603-114622 | None:intergenic | 25.0% |
!!! | CAAAATTTTCCTTAGTTTTC+TGG | + | tig0021212:114657-114676 | None:intergenic | 25.0% |
!!! | GAATTATGCAGAGTTATTTT+CGG | + | tig0021212:115251-115270 | None:intergenic | 25.0% |
! | TGAGTAGATTATATAAACCA+AGG | + | tig0021212:115452-115471 | None:intergenic | 25.0% |
! | TGAAAAAACTTGGAACAATT+AGG | + | tig0021212:115631-115650 | None:intergenic | 25.0% |
!! | TTTCAATTTTCAGATAGACT+CGG | - | tig0021212:115646-115665 | Msa1389160:CDS | 25.0% |
! | ACAATATCATGGTTTATAAG+CGG | - | tig0021212:115840-115859 | Msa1389160:intron | 25.0% |
!!! | AAGCTTACAATTTTGATAAC+CGG | - | tig0021212:115954-115973 | Msa1389160:intron | 25.0% |
! | ACATTCGTTTATTCTTTCAT+CGG | - | tig0021212:115983-116002 | Msa1389160:intron | 25.0% |
!! | TTTTGATGTCAAAAGAAAGA+GGG | + | tig0021212:116074-116093 | None:intergenic | 25.0% |
!!! | ATTTTGATGTCAAAAGAAAG+AGG | + | tig0021212:116075-116094 | None:intergenic | 25.0% |
!! | GTAAGAAATTGTGGTATTTT+AGG | + | tig0021212:116190-116209 | None:intergenic | 25.0% |
! | GTACATTAATGACATATACT+TGG | - | tig0021212:116429-116448 | Msa1389160:intron | 25.0% |
!!! | AGTTTGATTTTGTAGATACA+GGG | + | tig0021212:116486-116505 | None:intergenic | 25.0% |
!!! | AAGTTTGATTTTGTAGATAC+AGG | + | tig0021212:116487-116506 | None:intergenic | 25.0% |
! | TTCAAATAAAGATGGCTATT+TGG | + | tig0021212:116520-116539 | None:intergenic | 25.0% |
! | TATGTCACATATAAAGATCA+AGG | - | tig0021212:116663-116682 | Msa1389160:intron | 25.0% |
! | AGAATTACAACTCAGTTTTG+AGG | + | tig0021212:113357-113376 | None:intergenic | 30.0% |
! | AGAAATTGAAGGTGTAAGAA+TGG | + | tig0021212:113602-113621 | None:intergenic | 30.0% |
TTACACCTTCAATTTCTAAC+TGG | - | tig0021212:113605-113624 | Msa1389160:CDS | 30.0% | |
TGTTTCCAGTTAGAAATTGA+AGG | + | tig0021212:113613-113632 | None:intergenic | 30.0% | |
AATTTCTAACTGGAAACAAC+AGG | - | tig0021212:113615-113634 | Msa1389160:CDS | 30.0% | |
TTGTGTATGTGTATCTTGTT+TGG | - | tig0021212:113687-113706 | Msa1389160:CDS | 30.0% | |
GTGAGATGAAACAATTGATA+TGG | + | tig0021212:113816-113835 | None:intergenic | 30.0% | |
TGAAAAAGGATCAGATCTAT+TGG | + | tig0021212:113864-113883 | None:intergenic | 30.0% | |
!! | ATAGATCTGATCCTTTTTCA+TGG | - | tig0021212:113864-113883 | Msa1389160:intron | 30.0% |
!! | TAGATCTGATCCTTTTTCAT+GGG | - | tig0021212:113865-113884 | Msa1389160:intron | 30.0% |
TCAATTACTACCCATGAAAA+AGG | + | tig0021212:113878-113897 | None:intergenic | 30.0% | |
!!! | GATAAGTTTTAGATTGAAGG+TGG | + | tig0021212:113946-113965 | None:intergenic | 30.0% |
ATGCTAAATAATCAGGAAAC+TGG | + | tig0021212:114037-114056 | None:intergenic | 30.0% | |
TCGAGTTATTCAGAAAGATT+AGG | - | tig0021212:114081-114100 | Msa1389160:intron | 30.0% | |
TTGAATCAACATTGTCTTGT+AGG | - | tig0021212:114175-114194 | Msa1389160:intron | 30.0% | |
TGAATCAACATTGTCTTGTA+GGG | - | tig0021212:114176-114195 | Msa1389160:intron | 30.0% | |
AATTAAAGTTTCCACAAGGT+TGG | + | tig0021212:114240-114259 | None:intergenic | 30.0% | |
!!! | TCAAATATTTTGGTTCTGCA+TGG | + | tig0021212:114405-114424 | None:intergenic | 30.0% |
AGAAAGTAAAGCTAGAAACT+AGG | - | tig0021212:114926-114945 | Msa1389160:intron | 30.0% | |
AACTCTGCATAATTCTGAAT+TGG | - | tig0021212:115256-115275 | Msa1389160:intron | 30.0% | |
CTCATTTCCTAGTTATCAAA+TGG | - | tig0021212:115295-115314 | Msa1389160:intron | 30.0% | |
! | AGAAAAAACTGGACATTTTC+AGG | - | tig0021212:115338-115357 | Msa1389160:intron | 30.0% |
! | GAAAAAACTGGACATTTTCA+GGG | - | tig0021212:115339-115358 | Msa1389160:intron | 30.0% |
! | TTCATTTTGTGTGTTGGAAA+AGG | - | tig0021212:115720-115739 | Msa1389160:intron | 30.0% |
!! | AGCTTACAATTTTGATAACC+GGG | - | tig0021212:115955-115974 | Msa1389160:intron | 30.0% |
AATAAACGAATGTGAATTCC+CGG | + | tig0021212:115976-115995 | None:intergenic | 30.0% | |
! | TTCTTTTGACATCAAAATCC+AGG | - | tig0021212:116077-116096 | Msa1389160:intron | 30.0% |
! | TTCTTTTCATTACTTCGCAT+TGG | - | tig0021212:116215-116234 | Msa1389160:intron | 30.0% |
!!! | ATTGGAAAGTCTCTTTTTTC+TGG | - | tig0021212:116233-116252 | Msa1389160:intron | 30.0% |
! | ACCTCATACTTTTCCATAAA+TGG | + | tig0021212:116403-116422 | None:intergenic | 30.0% |
ATATACTTGGCAAAGATTGA+TGG | - | tig0021212:116442-116461 | Msa1389160:intron | 30.0% | |
! | AAGATTGATGGACATTATTC+TGG | - | tig0021212:116454-116473 | Msa1389160:intron | 30.0% |
!! | GTTTGATTTTGTAGATACAG+GGG | + | tig0021212:116485-116504 | None:intergenic | 30.0% |
ACAATGAATTACTCCTCTTA+AGG | + | tig0021212:116552-116571 | None:intergenic | 30.0% | |
ATCAAGGATATGAACATAAG+TGG | - | tig0021212:116679-116698 | Msa1389160:intron | 30.0% | |
TGGAAGCAATAAAACAGTTT+GGG | - | tig0021212:116699-116718 | Msa1389160:intron | 30.0% | |
!! | TATATTGCTATTTGCTGCTG+CGG | - | tig0021212:113284-113303 | Msa1389160:three_prime_UTR | 35.0% |
TTGATCTTCTTCTTCTGTTG+AGG | + | tig0021212:113488-113507 | None:intergenic | 35.0% | |
! | TCCACTGATGATGAATATAG+CGG | - | tig0021212:113523-113542 | Msa1389160:exon | 35.0% |
!! | CGGTGTTATCGTAGAATTAA+TGG | - | tig0021212:113543-113562 | Msa1389160:CDS | 35.0% |
! | ATTAATGGATCACCCTATCA+TGG | - | tig0021212:113558-113577 | Msa1389160:CDS | 35.0% |
AGGTAGTAGAATCCATGATA+GGG | + | tig0021212:113573-113592 | None:intergenic | 35.0% | |
AAGGTAGTAGAATCCATGAT+AGG | + | tig0021212:113574-113593 | None:intergenic | 35.0% | |
AGGTGTAAGAATGGATAAGA+AGG | + | tig0021212:113593-113612 | None:intergenic | 35.0% | |
TATTAGTTAGGCAATATGGC+TGG | - | tig0021212:113785-113804 | Msa1389160:intron | 35.0% | |
TAGGAATACGGAACAAAACT+TGG | - | tig0021212:114100-114119 | Msa1389160:intron | 35.0% | |
AGGAATACGGAACAAAACTT+GGG | - | tig0021212:114101-114120 | Msa1389160:intron | 35.0% | |
ACAAAACTTGGGTCTCAATA+AGG | - | tig0021212:114112-114131 | Msa1389160:intron | 35.0% | |
CAAAACTTGGGTCTCAATAA+GGG | - | tig0021212:114113-114132 | Msa1389160:intron | 35.0% | |
AAATGACAAGTTAGTACGCA+AGG | + | tig0021212:114327-114346 | None:intergenic | 35.0% | |
! | GCATCTGAAACTATAGTAAG+TGG | + | tig0021212:114737-114756 | None:intergenic | 35.0% |
!! | GCTTGATCAGAAGCATTATT+AGG | - | tig0021212:114755-114774 | Msa1389160:CDS | 35.0% |
ATCCAGATAACTTTCTACGT+AGG | - | tig0021212:114891-114910 | Msa1389160:intron | 35.0% | |
TTCTACGTAGGTGTGTATAA+AGG | - | tig0021212:114903-114922 | Msa1389160:intron | 35.0% | |
AAACTAGGAATCTTTACCTC+AGG | - | tig0021212:114941-114960 | Msa1389160:intron | 35.0% | |
! | CCTAACACCATTTGATAACT+AGG | + | tig0021212:115305-115324 | None:intergenic | 35.0% |
CCTAGTTATCAAATGGTGTT+AGG | - | tig0021212:115302-115321 | Msa1389160:intron | 35.0% | |
CTAGTGCTTCAAGAAAAAAC+TGG | - | tig0021212:115327-115346 | Msa1389160:intron | 35.0% | |
TAGTAGAAGAAGCTATTCCT+TGG | - | tig0021212:115432-115451 | Msa1389160:intron | 35.0% | |
AGGAGTAAGTAATCTCTTTG+CGG | - | tig0021212:115530-115549 | Msa1389160:intron | 35.0% | |
ATGTCTAGTGCACATTCAAT+AGG | + | tig0021212:115558-115577 | None:intergenic | 35.0% | |
TGCACTAGACATGAACTTAT+TGG | - | tig0021212:115566-115585 | Msa1389160:intron | 35.0% | |
AATTAGGCTTAGAATCACGT+TGG | + | tig0021212:115615-115634 | None:intergenic | 35.0% | |
!! | TTGTGGAAGTATTAGCATTC+AGG | - | tig0021212:115672-115691 | Msa1389160:CDS | 35.0% |
GTGCACCAATAACAATATCA+TGG | - | tig0021212:115829-115848 | Msa1389160:intron | 35.0% | |
ACTTCTCAAAGAATGTCATG+TGG | + | tig0021212:116023-116042 | None:intergenic | 35.0% | |
! | TTTTGACATCAAAATCCAGG+AGG | - | tig0021212:116080-116099 | Msa1389160:intron | 35.0% |
TTAATTGTTATGTGCTGCAG+TGG | - | tig0021212:116350-116369 | Msa1389160:intron | 35.0% | |
TGAGCTGCATATTCATCAAA+TGG | + | tig0021212:116379-116398 | None:intergenic | 35.0% | |
! | GCCATTTATGGAAAAGTATG+AGG | - | tig0021212:116399-116418 | Msa1389160:intron | 35.0% |
!! | TGGAAAAGTATGAGGTTTTG+AGG | - | tig0021212:116407-116426 | Msa1389160:intron | 35.0% |
AATAAAGATGGCTATTTGGC+TGG | + | tig0021212:116516-116535 | None:intergenic | 35.0% | |
! | AGCCATCTTTATTTGAATGC+TGG | - | tig0021212:116523-116542 | Msa1389160:CDS | 35.0% |
CTCCAGCATTCAAATAAAGA+TGG | + | tig0021212:116528-116547 | None:intergenic | 35.0% | |
! | CATCTTTATTTGAATGCTGG+AGG | - | tig0021212:116526-116545 | Msa1389160:CDS | 35.0% |
GTGGAAGCAATAAAACAGTT+TGG | - | tig0021212:116698-116717 | Msa1389160:intron | 35.0% | |
GATAGTAGTTTAGTGTTGTC+TGG | + | tig0021212:116740-116759 | None:intergenic | 35.0% | |
GTAGAGTAAGACATTGTTGT+GGG | + | tig0021212:116792-116811 | None:intergenic | 35.0% | |
AGTAGAGTAAGACATTGTTG+TGG | + | tig0021212:116793-116812 | None:intergenic | 35.0% | |
!! | ATATTGCTATTTGCTGCTGC+GGG | - | tig0021212:113285-113304 | Msa1389160:three_prime_UTR | 40.0% |
ACCGCTATATTCATCATCAG+TGG | + | tig0021212:113527-113546 | None:intergenic | 40.0% | |
TCTAACTGGAAACAACAGGT+AGG | - | tig0021212:113619-113638 | Msa1389160:CDS | 40.0% | |
ATTGTCTTGTAGGGCAAGAA+GGG | - | tig0021212:114185-114204 | Msa1389160:intron | 40.0% | |
TATCTGTCACAATTCTGTGC+AGG | - | tig0021212:114363-114382 | Msa1389160:intron | 40.0% | |
! | ATTCTGTGCAGGAAGGTTTT+TGG | - | tig0021212:114374-114393 | Msa1389160:intron | 40.0% |
TGTGGTGAATGATAAACGAG+AGG | - | tig0021212:114501-114520 | Msa1389160:intron | 40.0% | |
GATCAGGTTTCTGCACAATT+TGG | - | tig0021212:114563-114582 | Msa1389160:CDS | 40.0% | |
GCATTATTAGGTGAGTCCTA+TGG | - | tig0021212:114767-114786 | Msa1389160:intron | 40.0% | |
CACCTACGTAGAAAGTTATC+TGG | + | tig0021212:114896-114915 | None:intergenic | 40.0% | |
AGATGGCTGTCCCTTTATTA+TGG | - | tig0021212:114988-115007 | Msa1389160:intron | 40.0% | |
GATGGCTGTCCCTTTATTAT+GGG | - | tig0021212:114989-115008 | Msa1389160:intron | 40.0% | |
AGATCACATAGGAAGACAGA+TGG | + | tig0021212:115189-115208 | None:intergenic | 40.0% | |
! | GTACTGACAACAGATCACAT+AGG | + | tig0021212:115200-115219 | None:intergenic | 40.0% |
ATTTACCTGATCAGCAACTC+CGG | + | tig0021212:115388-115407 | None:intergenic | 40.0% | |
TAATCTACTCATTCTGCTGC+AGG | - | tig0021212:115461-115480 | Msa1389160:intron | 40.0% | |
AATCTACTCATTCTGCTGCA+GGG | - | tig0021212:115462-115481 | Msa1389160:intron | 40.0% | |
AGAGAGGTCAAAGAAGAAAC+AGG | - | tig0021212:115510-115529 | Msa1389160:intron | 40.0% | |
TCAGATAGACTCGGAATTTG+TGG | - | tig0021212:115655-115674 | Msa1389160:CDS | 40.0% | |
!! | TGGAAGTATTAGCATTCAGG+TGG | - | tig0021212:115675-115694 | Msa1389160:CDS | 40.0% |
!! | GGAAGTATTAGCATTCAGGT+GGG | - | tig0021212:115676-115695 | Msa1389160:CDS | 40.0% |
AGGAAGTTCCAAACTTCCAA+TGG | - | tig0021212:115740-115759 | Msa1389160:intron | 40.0% | |
ATGTTCAGCCATTGGAAGTT+TGG | + | tig0021212:115751-115770 | None:intergenic | 40.0% | |
AAACTTCCAATGGCTGAACA+TGG | - | tig0021212:115750-115769 | Msa1389160:intron | 40.0% | |
AACGTGACCAAGCAAAAACA+AGG | + | tig0021212:115781-115800 | None:intergenic | 40.0% | |
ATATGCAGCTCAGCCATTTA+TGG | - | tig0021212:116387-116406 | Msa1389160:intron | 40.0% | |
TTGTTGTGGGACAAAATTCC+AGG | + | tig0021212:116779-116798 | None:intergenic | 40.0% | |
ACTGGAAACAACAGGTAGGT+AGG | - | tig0021212:113623-113642 | Msa1389160:CDS | 45.0% | |
CATTGTCTTGTAGGGCAAGA+AGG | - | tig0021212:114184-114203 | Msa1389160:intron | 45.0% | |
! | ACAAGGTTGGCCAGATGAAT+AGG | + | tig0021212:114227-114246 | None:intergenic | 45.0% |
TATTCATCTGGCCAACCTTG+TGG | - | tig0021212:114226-114245 | Msa1389160:intron | 45.0% | |
TGTCACAATTCTGTGCAGGA+AGG | - | tig0021212:114367-114386 | Msa1389160:intron | 45.0% | |
TGTGCAGAAACCTGATCATG+TGG | + | tig0021212:114560-114579 | None:intergenic | 45.0% | |
GAAGCACAAACACTCCCATA+TGG | - | tig0021212:114585-114604 | Msa1389160:CDS | 45.0% | |
!! | CTTAGTTTTCTGGTCACGCT+AGG | + | tig0021212:114647-114666 | None:intergenic | 45.0% |
CTAGCGTGACCAGAAAACTA+AGG | - | tig0021212:114645-114664 | Msa1389160:intron | 45.0% | |
ACAAGCTCAACAAGCTCATG+AGG | - | tig0021212:114703-114722 | Msa1389160:intron | 45.0% | |
GTCCTATGGATACACAACTC+CGG | - | tig0021212:114781-114800 | Msa1389160:intron | 45.0% | |
TATGGATACACAACTCCGGT+GGG | - | tig0021212:114785-114804 | Msa1389160:intron | 45.0% | |
GGAAACCTTTACCGTTCTTC+AGG | + | tig0021212:114813-114832 | None:intergenic | 45.0% | |
CACACTCCCATATGGTTAGA+TGG | - | tig0021212:114971-114990 | Msa1389160:intron | 45.0% | |
GGACAGCCATCTAACCATAT+GGG | + | tig0021212:114980-114999 | None:intergenic | 45.0% | |
!! | ACTGGACATTTTCAGGGAAC+TGG | - | tig0021212:115345-115364 | Msa1389160:intron | 45.0% |
!! | ATTTTCAGGGAACTGGATCC+TGG | - | tig0021212:115352-115371 | Msa1389160:intron | 45.0% |
GGATCCTGGAAATTTCCTAC+CGG | - | tig0021212:115366-115385 | Msa1389160:intron | 45.0% | |
AACTCCGGTAGGAAATTTCC+AGG | + | tig0021212:115373-115392 | None:intergenic | 45.0% | |
!!! | TCACGTTGGTTCTTTTGTCG+TGG | + | tig0021212:115601-115620 | None:intergenic | 45.0% |
!!! | GGAGAGTCCTTGTTTTTGCT+TGG | - | tig0021212:115771-115790 | Msa1389160:intron | 45.0% |
GGTAGAGATAGAAGCTGCAA+AGG | - | tig0021212:116101-116120 | Msa1389160:intron | 45.0% | |
! | TCCTGTCTCTTTTGTACACC+TGG | - | tig0021212:116758-116777 | Msa1389160:five_prime_UTR | 45.0% |
TCCAGGTGTACAAAAGAGAC+AGG | + | tig0021212:116762-116781 | None:intergenic | 45.0% | |
AAGGGACAGTTTACCTGTGC+TGG | - | tig0021212:114131-114150 | Msa1389160:intron | 50.0% | |
CTAGTGACGATTTCCAGCAC+AGG | + | tig0021212:114147-114166 | None:intergenic | 50.0% | |
!! | TGTAGGGCAAGAAGGGTGTT+TGG | - | tig0021212:114192-114211 | Msa1389160:intron | 50.0% |
GTGTGTGGCATTTGCAGGAA+TGG | + | tig0021212:114461-114480 | None:intergenic | 50.0% | |
CAAACGCTCCAATACCCACT+CGG | + | tig0021212:114483-114502 | None:intergenic | 50.0% | |
!! | AGTGGGTATTGGAGCGTTTG+TGG | - | tig0021212:114483-114502 | Msa1389160:intron | 50.0% |
TGCAGAGCAACCACATGATC+AGG | - | tig0021212:114547-114566 | Msa1389160:intron | 50.0% | |
CACCGGAGTTGTGTATCCAT+AGG | + | tig0021212:114786-114805 | None:intergenic | 50.0% | |
CTATGGATACACAACTCCGG+TGG | - | tig0021212:114784-114803 | Msa1389160:intron | 50.0% | |
GGGTTCCTGAAGAACGGTAA+AGG | - | tig0021212:114805-114824 | Msa1389160:intron | 50.0% | |
GAAGCACACACACTCCCATA+TGG | - | tig0021212:114963-114982 | Msa1389160:intron | 50.0% | |
GGGACAGCCATCTAACCATA+TGG | + | tig0021212:114981-115000 | None:intergenic | 50.0% | |
TTGTGCAGCAGCAGTAAGAG+AGG | - | tig0021212:115494-115513 | Msa1389160:intron | 50.0% | |
GACTCTCCATGTTCAGCCAT+TGG | + | tig0021212:115759-115778 | None:intergenic | 50.0% | |
AGCGGTCAGATAATACGTGC+TGG | - | tig0021212:115858-115877 | Msa1389160:CDS | 50.0% | |
CAGCTTCTATCTCTACCTCC+TGG | + | tig0021212:116098-116117 | None:intergenic | 50.0% | |
TGAATGCTGGAGGCCTTAAG+AGG | - | tig0021212:116536-116555 | Msa1389160:CDS | 50.0% | |
!! | TTGCTATTTGCTGCTGCGGG+AGG | - | tig0021212:113288-113307 | Msa1389160:three_prime_UTR | 55.0% |
!! | ACTCGGTGTGTGGCATTTGC+AGG | + | tig0021212:114466-114485 | None:intergenic | 55.0% |
TGCAAATGCCACACACCGAG+TGG | - | tig0021212:114465-114484 | Msa1389160:intron | 55.0% | |
GCAAATGCCACACACCGAGT+GGG | - | tig0021212:114466-114485 | Msa1389160:intron | 55.0% | |
!! | TCCAATACCCACTCGGTGTG+TGG | + | tig0021212:114476-114495 | None:intergenic | 55.0% |
! | TCCGGTGGGTTCCTGAAGAA+CGG | - | tig0021212:114799-114818 | Msa1389160:intron | 55.0% |
ACCGTTCTTCAGGAACCCAC+CGG | + | tig0021212:114803-114822 | None:intergenic | 55.0% | |
TCCTACCGGAGTTGCTGATC+AGG | - | tig0021212:115380-115399 | Msa1389160:intron | 55.0% | |
ACCTGATCAGCAACTCCGGT+AGG | + | tig0021212:115384-115403 | None:intergenic | 55.0% | |
GCCACACACCGAGTGGGTAT+TGG | - | tig0021212:114472-114491 | Msa1389160:intron | 60.0% | |
! | GGGAGTGTGTGTGCTTCCTG+AGG | + | tig0021212:114960-114979 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0021212 | gene | 113278 | 116827 | 113278 | ID=Msa1389160;Name=Msa1389160 |
tig0021212 | mRNA | 113278 | 116827 | 113278 | ID=Msa1389160-mRNA-1;Parent=Msa1389160;Name=Msa1389160-mRNA-1;_AED=0.25;_eAED=0.25;_QI=100|0.87|0.88|1|0.87|0.77|9|254|285 |
tig0021212 | exon | 113278 | 113735 | 113278 | ID=Msa1389160-mRNA-1:exon:11487;Parent=Msa1389160-mRNA-1 |
tig0021212 | exon | 113983 | 114091 | 113983 | ID=Msa1389160-mRNA-1:exon:11486;Parent=Msa1389160-mRNA-1 |
tig0021212 | exon | 114412 | 114446 | 114412 | ID=Msa1389160-mRNA-1:exon:11485;Parent=Msa1389160-mRNA-1 |
tig0021212 | exon | 114554 | 114622 | 114554 | ID=Msa1389160-mRNA-1:exon:11484;Parent=Msa1389160-mRNA-1 |
tig0021212 | exon | 114704 | 114781 | 114704 | ID=Msa1389160-mRNA-1:exon:11483;Parent=Msa1389160-mRNA-1 |
tig0021212 | exon | 115583 | 115720 | 115583 | ID=Msa1389160-mRNA-1:exon:11482;Parent=Msa1389160-mRNA-1 |
tig0021212 | exon | 115843 | 115908 | 115843 | ID=Msa1389160-mRNA-1:exon:11481;Parent=Msa1389160-mRNA-1 |
tig0021212 | exon | 116469 | 116636 | 116469 | ID=Msa1389160-mRNA-1:exon:11480;Parent=Msa1389160-mRNA-1 |
tig0021212 | exon | 116737 | 116827 | 116737 | ID=Msa1389160-mRNA-1:exon:11479;Parent=Msa1389160-mRNA-1 |
tig0021212 | five_prime_UTR | 116737 | 116827 | 116737 | ID=Msa1389160-mRNA-1:five_prime_utr;Parent=Msa1389160-mRNA-1 |
tig0021212 | five_prime_UTR | 116628 | 116636 | 116628 | ID=Msa1389160-mRNA-1:five_prime_utr;Parent=Msa1389160-mRNA-1 |
tig0021212 | CDS | 116469 | 116627 | 116469 | ID=Msa1389160-mRNA-1:cds;Parent=Msa1389160-mRNA-1 |
tig0021212 | CDS | 115843 | 115908 | 115843 | ID=Msa1389160-mRNA-1:cds;Parent=Msa1389160-mRNA-1 |
tig0021212 | CDS | 115583 | 115720 | 115583 | ID=Msa1389160-mRNA-1:cds;Parent=Msa1389160-mRNA-1 |
tig0021212 | CDS | 114704 | 114781 | 114704 | ID=Msa1389160-mRNA-1:cds;Parent=Msa1389160-mRNA-1 |
tig0021212 | CDS | 114554 | 114622 | 114554 | ID=Msa1389160-mRNA-1:cds;Parent=Msa1389160-mRNA-1 |
tig0021212 | CDS | 114412 | 114446 | 114412 | ID=Msa1389160-mRNA-1:cds;Parent=Msa1389160-mRNA-1 |
tig0021212 | CDS | 113983 | 114091 | 113983 | ID=Msa1389160-mRNA-1:cds;Parent=Msa1389160-mRNA-1 |
tig0021212 | CDS | 113532 | 113735 | 113532 | ID=Msa1389160-mRNA-1:cds;Parent=Msa1389160-mRNA-1 |
tig0021212 | three_prime_UTR | 113278 | 113531 | 113278 | ID=Msa1389160-mRNA-1:three_prime_utr;Parent=Msa1389160-mRNA-1 |
Gene Sequence |
Protein sequence |