AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1389160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1389160 MtrunA17_Chr4g0076351 95.439 285 6 2 1 285 1 278 0.0 560
Msa1389160 MtrunA17_Chr2g0290501 71.479 284 69 5 4 284 59 333 1.75e-146 414
Msa1389160 MtrunA17_Chr3g0102431 57.509 273 107 3 11 283 23 286 8.26e-110 319
Msa1389160 MtrunA17_Chr8g0383231 56.107 262 105 3 14 275 19 270 1.79e-101 298
Msa1389160 MtrunA17_Chr3g0120821 52.852 263 113 4 13 275 80 331 1.68e-99 295
Msa1389160 MtrunA17_Chr4g0055811 45.788 273 140 3 13 285 91 355 4.73e-82 251
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1389160 AT5G47650.5 55.709 289 111 5 1 283 1 278 4.18e-110 320
Msa1389160 AT5G47650.3 55.709 289 111 5 1 283 1 278 4.18e-110 320
Msa1389160 AT5G47650.1 55.709 289 111 5 1 283 1 278 4.18e-110 320
Msa1389160 AT5G47650.4 56.679 277 109 4 7 283 59 324 3.58e-109 319
Msa1389160 AT5G47650.2 56.679 277 109 4 7 283 60 325 4.31e-109 319
Msa1389160 AT4G25434.10 53.759 266 110 5 12 275 18 272 3.11e-95 282
Msa1389160 AT4G25434.8 50.523 287 114 6 12 275 18 299 2.80e-93 278
Msa1389160 AT4G25434.1 52.632 266 108 6 12 275 18 267 3.20e-90 269
Msa1389160 AT4G12720.2 50.000 274 125 5 10 281 7 270 1.29e-88 265
Msa1389160 AT4G12720.3 50.000 274 125 5 10 281 7 270 1.29e-88 265
Msa1389160 AT4G12720.1 50.000 274 125 5 10 281 7 270 1.29e-88 265
Msa1389160 AT4G25434.2 49.477 287 112 7 12 275 18 294 2.88e-88 265
Msa1389160 AT4G25434.7 58.937 207 77 3 12 218 18 216 8.43e-83 248
Msa1389160 AT5G47240.1 47.842 278 129 6 1 275 86 350 8.10e-82 251
Msa1389160 AT4G25434.6 54.825 228 80 4 12 218 18 243 3.93e-81 245
Msa1389160 AT2G04450.1 48.529 272 127 6 7 275 4 265 1.06e-80 245
Msa1389160 AT4G12720.4 43.631 314 125 6 10 281 7 310 1.26e-80 246
Msa1389160 AT2G04430.2 48.193 249 120 3 10 255 7 249 9.16e-78 238
Msa1389160 AT4G25434.9 57.488 207 75 4 12 218 18 211 9.87e-78 235
Msa1389160 AT2G04430.1 48.193 249 120 3 10 255 26 268 1.97e-77 238
Msa1389160 AT5G47240.2 43.322 307 129 7 1 275 86 379 1.74e-75 236
Msa1389160 AT4G25434.3 55.122 205 81 3 73 275 32 227 3.23e-75 229
Msa1389160 AT4G25434.5 55.122 205 81 3 73 275 32 227 3.23e-75 229
Msa1389160 AT4G12720.5 53.555 211 88 4 10 218 7 209 5.06e-73 223
Msa1389160 AT4G25434.4 53.659 205 79 4 73 275 32 222 6.09e-70 216
Msa1389160 AT4G25434.13 49.524 210 80 4 89 275 1 207 7.66e-64 200
Msa1389160 AT4G25434.12 55.429 175 70 3 7 181 13 179 4.92e-62 196
Msa1389160 AT4G25434.11 50.510 196 74 4 7 181 13 206 4.09e-60 192
Msa1389160 AT4G12720.6 48.205 195 91 4 89 281 1 187 7.42e-56 179
Msa1389160 AT2G04440.1 43.269 208 104 3 7 201 4 210 6.42e-48 159

Find 70 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTACAAGCATCAAATATTT+TGG 0.159229 tig0021212:+115671 None:intergenic
TTCAAATAAAGATGGCTATT+TGG 0.203005 tig0021212:+113566 None:intergenic
AAGATTGATGGACATTATTC+TGG 0.227648 tig0021212:-113629 Msa1389160:CDS
ATATGCAGCTCAGCCATTTA+TGG 0.279024 tig0021212:-113696 Msa1389160:CDS
TTGTGGAAGTATTAGCATTC+AGG 0.296467 tig0021212:-114411 Msa1389160:intron
CGGTGTTATCGTAGAATTAA+TGG 0.299809 tig0021212:-116540 Msa1389160:CDS
TTACACCTTCAATTTCTAAC+TGG 0.317897 tig0021212:-116478 Msa1389160:CDS
GTGGAAGCAATAAAACAGTT+TGG 0.339576 tig0021212:-113385 Msa1389160:three_prime_UTR
GATAAAATTACCTATTCATC+TGG 0.356295 tig0021212:-115869 Msa1389160:CDS
ACAATGAATTACTCCTCTTA+AGG 0.361763 tig0021212:+113534 None:intergenic
GATAGTAGTTTAGTGTTGTC+TGG 0.366743 tig0021212:+113346 None:intergenic
ACTCGGTGTGTGGCATTTGC+AGG 0.374095 tig0021212:+115620 None:intergenic
GCCATTTATGGAAAAGTATG+AGG 0.393678 tig0021212:-113684 Msa1389160:CDS
TTGTTGTGGGACAAAATTCC+AGG 0.396840 tig0021212:+113307 None:intergenic
CAGCTTCTATCTCTACCTCC+TGG 0.398995 tig0021212:+113988 None:intergenic
TCCTACCGGAGTTGCTGATC+AGG 0.409277 tig0021212:-114703 Msa1389160:intron
TATTATAGTTACAATTCAAT+TGG 0.413564 tig0021212:+113453 None:intergenic
AATAAAGATGGCTATTTGGC+TGG 0.419860 tig0021212:+113570 None:intergenic
ACAAGGTTGGCCAGATGAAT+AGG 0.422162 tig0021212:+115859 None:intergenic
TGGAAGCAATAAAACAGTTT+GGG 0.426111 tig0021212:-113384 Msa1389160:three_prime_UTR
TGTAGGGCAAGAAGGGTGTT+TGG 0.427765 tig0021212:-115891 Msa1389160:intron
AATATTTGATGCTTGTACAT+TGG 0.428434 tig0021212:-115667 Msa1389160:CDS
AGCCATCTTTATTTGAATGC+TGG 0.428650 tig0021212:-113560 Msa1389160:CDS
GCCACACACCGAGTGGGTAT+TGG 0.432566 tig0021212:-115611 Msa1389160:CDS
AGAGAGGTCAAAGAAGAAAC+AGG 0.434993 tig0021212:-114573 Msa1389160:CDS
TGTTTCCAGTTAGAAATTGA+AGG 0.439398 tig0021212:+116473 None:intergenic
CATTGTCTTGTAGGGCAAGA+AGG 0.454453 tig0021212:-115899 Msa1389160:intron
TTGATCTTCTTCTTCTGTTG+AGG 0.456043 tig0021212:+116598 None:intergenic
TCAGATAGACTCGGAATTTG+TGG 0.463019 tig0021212:-114428 Msa1389160:intron
ATATACTTGGCAAAGATTGA+TGG 0.464974 tig0021212:-113641 Msa1389160:CDS
AAGGTAGTAGAATCCATGAT+AGG 0.468658 tig0021212:+116512 None:intergenic
AATTTCTAACTGGAAACAAC+AGG 0.477830 tig0021212:-116468 Msa1389160:intron
TGAATGCTGGAGGCCTTAAG+AGG 0.480821 tig0021212:-113547 Msa1389160:CDS
AATTAAAGTTTCCACAAGGT+TGG 0.483065 tig0021212:+115846 None:intergenic
AACTCCGGTAGGAAATTTCC+AGG 0.487178 tig0021212:+114713 None:intergenic
AGTGGGTATTGGAGCGTTTG+TGG 0.488578 tig0021212:-115600 Msa1389160:CDS
AGAAATTGAAGGTGTAAGAA+TGG 0.490971 tig0021212:+116484 None:intergenic
TGAGCTGCATATTCATCAAA+TGG 0.494421 tig0021212:+113707 None:intergenic
ATCAAGGATATGAACATAAG+TGG 0.494948 tig0021212:-113404 Msa1389160:three_prime_UTR
ATTAATGGATCACCCTATCA+TGG 0.500732 tig0021212:-116525 Msa1389160:CDS
TATATTGCTATTTGCTGCTG+CGG 0.508453 tig0021212:-116799 Msa1389160:five_prime_UTR
GTGTGTGGCATTTGCAGGAA+TGG 0.522297 tig0021212:+115625 None:intergenic
TATGTCACATATAAAGATCA+AGG 0.525997 tig0021212:-113420 Msa1389160:three_prime_UTR
TCCAGGTGTACAAAAGAGAC+AGG 0.526090 tig0021212:+113324 None:intergenic
CTCCAGCATTCAAATAAAGA+TGG 0.531291 tig0021212:+113558 None:intergenic
AGGTGTAAGAATGGATAAGA+AGG 0.540844 tig0021212:+116493 None:intergenic
ATATTGCTATTTGCTGCTGC+GGG 0.542929 tig0021212:-116798 Msa1389160:five_prime_UTR
TGCAAATGCCACACACCGAG+TGG 0.544339 tig0021212:-115618 Msa1389160:CDS
GTAGAGTAAGACATTGTTGT+GGG 0.545467 tig0021212:+113294 None:intergenic
GGTAGAGATAGAAGCTGCAA+AGG 0.549918 tig0021212:-113982 Msa1389160:intron
ATTGTCTTGTAGGGCAAGAA+GGG 0.550569 tig0021212:-115898 Msa1389160:intron
CATCTTTATTTGAATGCTGG+AGG 0.553074 tig0021212:-113557 Msa1389160:CDS
TATTCATCTGGCCAACCTTG+TGG 0.553285 tig0021212:-115857 Msa1389160:CDS
TCCAATACCCACTCGGTGTG+TGG 0.564012 tig0021212:+115610 None:intergenic
TTGTGCAGCAGCAGTAAGAG+AGG 0.565131 tig0021212:-114589 Msa1389160:CDS
AGGTAGTAGAATCCATGATA+GGG 0.567767 tig0021212:+116513 None:intergenic
AGGAGTAAGTAATCTCTTTG+CGG 0.575207 tig0021212:-114553 Msa1389160:intron
GTACATTAATGACATATACT+TGG 0.579892 tig0021212:-113654 Msa1389160:CDS
TTGCTATTTGCTGCTGCGGG+AGG 0.587723 tig0021212:-116795 Msa1389160:five_prime_UTR
ACCGCTATATTCATCATCAG+TGG 0.604610 tig0021212:+116559 None:intergenic
CATTAATTAAAGTTTCCACA+AGG 0.606195 tig0021212:+115842 None:intergenic
GGATCCTGGAAATTTCCTAC+CGG 0.606581 tig0021212:-114717 Msa1389160:CDS
ATTTACCTGATCAGCAACTC+CGG 0.611010 tig0021212:+114698 None:intergenic
AGTAGAGTAAGACATTGTTG+TGG 0.635377 tig0021212:+113293 None:intergenic
CAAACGCTCCAATACCCACT+CGG 0.649930 tig0021212:+115603 None:intergenic
ACCTGATCAGCAACTCCGGT+AGG 0.652284 tig0021212:+114702 None:intergenic
GCAAATGCCACACACCGAGT+GGG 0.669457 tig0021212:-115617 Msa1389160:CDS
ACTTCTCAAAGAATGTCATG+TGG 0.686811 tig0021212:+114063 None:intergenic
TGTGGTGAATGATAAACGAG+AGG 0.692588 tig0021212:-115582 Msa1389160:intron
TCCACTGATGATGAATATAG+CGG 0.705890 tig0021212:-116560 Msa1389160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATTTACTAACTCTAA+TGG - tig0021212:113653-113672 Msa1389160:CDS 15.0%
!!! AACTTTCTTATTTTGAAAAT+AGG + tig0021212:114834-114853 None:intergenic 15.0%
!! TATTATAGTTACAATTCAAT+TGG + tig0021212:116633-116652 None:intergenic 15.0%
!! CTTATCCTTAATCAATTTAA+AGG - tig0021212:113734-113753 Msa1389160:intron 20.0%
!! AGTATCCTTTAAATTGATTA+AGG + tig0021212:113742-113761 None:intergenic 20.0%
!! GTAGTAATTGAACTAATTAA+GGG - tig0021212:113887-113906 Msa1389160:intron 20.0%
!! TCAAAATAAGAAAGTTAACA+AGG - tig0021212:114838-114857 Msa1389160:intron 20.0%
!! ATTTCTATTCCCATAATAAA+GGG + tig0021212:115001-115020 None:intergenic 20.0%
!! AATTTCTATTCCCATAATAA+AGG + tig0021212:115002-115021 None:intergenic 20.0%
!!! AATGTTATTTCTATGTATCA+AGG + tig0021212:115101-115120 None:intergenic 20.0%
!! ATCTGAAAATTGAAAAAACT+TGG + tig0021212:115641-115660 None:intergenic 20.0%
!!! TAATATTTCATTTTGTGTGT+TGG - tig0021212:115714-115733 Msa1389160:intron 20.0%
!! ATAAACCATGATATTGTTAT+TGG + tig0021212:115837-115856 None:intergenic 20.0%
!! CAACAACTAAACAATAAAAT+CGG + tig0021212:115899-115918 None:intergenic 20.0%
!! TTTAGTTGTTGAAAAAATGT+AGG - tig0021212:115908-115927 Msa1389160:intron 20.0%
!! TTGAAATTATGCACTAAATA+AGG - tig0021212:116138-116157 Msa1389160:intron 20.0%
!!! TAAGAAATTGTGGTATTTTA+GGG + tig0021212:116189-116208 None:intergenic 20.0%
!! AGAATATATGTAAGAAATTG+TGG + tig0021212:116199-116218 None:intergenic 20.0%
!!! CAGTAAATTTTAGTATTATG+AGG - tig0021212:116290-116309 Msa1389160:intron 20.0%
!! TATTCATTATATATAGCAAC+AGG - tig0021212:116320-116339 Msa1389160:intron 20.0%
!! ATTCATTATATATAGCAACA+GGG - tig0021212:116321-116340 Msa1389160:intron 20.0%
! TGAAGTTCATGTTATTAGTT+AGG - tig0021212:113773-113792 Msa1389160:intron 25.0%
! ATGTTATTAGTTAGGCAATA+TGG - tig0021212:113781-113800 Msa1389160:intron 25.0%
! GGTAGTAATTGAACTAATTA+AGG - tig0021212:113886-113905 Msa1389160:intron 25.0%
! AATGATATTTATGAGTGAGT+GGG + tig0021212:113915-113934 None:intergenic 25.0%
! TAATGATATTTATGAGTGAG+TGG + tig0021212:113916-113935 None:intergenic 25.0%
!!! ATAAGTTTTAGATTGAAGGT+GGG + tig0021212:113945-113964 None:intergenic 25.0%
!!! GTAGATAAGTTTTAGATTGA+AGG + tig0021212:113949-113968 None:intergenic 25.0%
! TTCTTAGATGCTAAATAATC+AGG + tig0021212:114044-114063 None:intergenic 25.0%
! ATTCAGAAAGATTAGGAATA+CGG - tig0021212:114088-114107 Msa1389160:intron 25.0%
! GATAAAATTACCTATTCATC+TGG - tig0021212:114214-114233 Msa1389160:intron 25.0%
! CATTAATTAAAGTTTCCACA+AGG + tig0021212:114244-114263 None:intergenic 25.0%
!! TGTACAAGCATCAAATATTT+TGG + tig0021212:114415-114434 None:intergenic 25.0%
! AATATTTGATGCTTGTACAT+TGG - tig0021212:114416-114435 Msa1389160:CDS 25.0%
! TCCCATATGGTTATATATTT+AGG - tig0021212:114598-114617 Msa1389160:CDS 25.0%
! CCCTAAATATATAACCATAT+GGG + tig0021212:114602-114621 None:intergenic 25.0%
! CCCATATGGTTATATATTTA+GGG - tig0021212:114599-114618 Msa1389160:CDS 25.0%
! ACCCTAAATATATAACCATA+TGG + tig0021212:114603-114622 None:intergenic 25.0%
!!! CAAAATTTTCCTTAGTTTTC+TGG + tig0021212:114657-114676 None:intergenic 25.0%
!!! GAATTATGCAGAGTTATTTT+CGG + tig0021212:115251-115270 None:intergenic 25.0%
! TGAGTAGATTATATAAACCA+AGG + tig0021212:115452-115471 None:intergenic 25.0%
! TGAAAAAACTTGGAACAATT+AGG + tig0021212:115631-115650 None:intergenic 25.0%
!! TTTCAATTTTCAGATAGACT+CGG - tig0021212:115646-115665 Msa1389160:CDS 25.0%
! ACAATATCATGGTTTATAAG+CGG - tig0021212:115840-115859 Msa1389160:intron 25.0%
!!! AAGCTTACAATTTTGATAAC+CGG - tig0021212:115954-115973 Msa1389160:intron 25.0%
! ACATTCGTTTATTCTTTCAT+CGG - tig0021212:115983-116002 Msa1389160:intron 25.0%
!! TTTTGATGTCAAAAGAAAGA+GGG + tig0021212:116074-116093 None:intergenic 25.0%
!!! ATTTTGATGTCAAAAGAAAG+AGG + tig0021212:116075-116094 None:intergenic 25.0%
!! GTAAGAAATTGTGGTATTTT+AGG + tig0021212:116190-116209 None:intergenic 25.0%
! GTACATTAATGACATATACT+TGG - tig0021212:116429-116448 Msa1389160:intron 25.0%
!!! AGTTTGATTTTGTAGATACA+GGG + tig0021212:116486-116505 None:intergenic 25.0%
!!! AAGTTTGATTTTGTAGATAC+AGG + tig0021212:116487-116506 None:intergenic 25.0%
! TTCAAATAAAGATGGCTATT+TGG + tig0021212:116520-116539 None:intergenic 25.0%
! TATGTCACATATAAAGATCA+AGG - tig0021212:116663-116682 Msa1389160:intron 25.0%
! AGAATTACAACTCAGTTTTG+AGG + tig0021212:113357-113376 None:intergenic 30.0%
! AGAAATTGAAGGTGTAAGAA+TGG + tig0021212:113602-113621 None:intergenic 30.0%
TTACACCTTCAATTTCTAAC+TGG - tig0021212:113605-113624 Msa1389160:CDS 30.0%
TGTTTCCAGTTAGAAATTGA+AGG + tig0021212:113613-113632 None:intergenic 30.0%
AATTTCTAACTGGAAACAAC+AGG - tig0021212:113615-113634 Msa1389160:CDS 30.0%
TTGTGTATGTGTATCTTGTT+TGG - tig0021212:113687-113706 Msa1389160:CDS 30.0%
GTGAGATGAAACAATTGATA+TGG + tig0021212:113816-113835 None:intergenic 30.0%
TGAAAAAGGATCAGATCTAT+TGG + tig0021212:113864-113883 None:intergenic 30.0%
!! ATAGATCTGATCCTTTTTCA+TGG - tig0021212:113864-113883 Msa1389160:intron 30.0%
!! TAGATCTGATCCTTTTTCAT+GGG - tig0021212:113865-113884 Msa1389160:intron 30.0%
TCAATTACTACCCATGAAAA+AGG + tig0021212:113878-113897 None:intergenic 30.0%
!!! GATAAGTTTTAGATTGAAGG+TGG + tig0021212:113946-113965 None:intergenic 30.0%
ATGCTAAATAATCAGGAAAC+TGG + tig0021212:114037-114056 None:intergenic 30.0%
TCGAGTTATTCAGAAAGATT+AGG - tig0021212:114081-114100 Msa1389160:intron 30.0%
TTGAATCAACATTGTCTTGT+AGG - tig0021212:114175-114194 Msa1389160:intron 30.0%
TGAATCAACATTGTCTTGTA+GGG - tig0021212:114176-114195 Msa1389160:intron 30.0%
AATTAAAGTTTCCACAAGGT+TGG + tig0021212:114240-114259 None:intergenic 30.0%
!!! TCAAATATTTTGGTTCTGCA+TGG + tig0021212:114405-114424 None:intergenic 30.0%
AGAAAGTAAAGCTAGAAACT+AGG - tig0021212:114926-114945 Msa1389160:intron 30.0%
AACTCTGCATAATTCTGAAT+TGG - tig0021212:115256-115275 Msa1389160:intron 30.0%
CTCATTTCCTAGTTATCAAA+TGG - tig0021212:115295-115314 Msa1389160:intron 30.0%
! AGAAAAAACTGGACATTTTC+AGG - tig0021212:115338-115357 Msa1389160:intron 30.0%
! GAAAAAACTGGACATTTTCA+GGG - tig0021212:115339-115358 Msa1389160:intron 30.0%
! TTCATTTTGTGTGTTGGAAA+AGG - tig0021212:115720-115739 Msa1389160:intron 30.0%
!! AGCTTACAATTTTGATAACC+GGG - tig0021212:115955-115974 Msa1389160:intron 30.0%
AATAAACGAATGTGAATTCC+CGG + tig0021212:115976-115995 None:intergenic 30.0%
! TTCTTTTGACATCAAAATCC+AGG - tig0021212:116077-116096 Msa1389160:intron 30.0%
! TTCTTTTCATTACTTCGCAT+TGG - tig0021212:116215-116234 Msa1389160:intron 30.0%
!!! ATTGGAAAGTCTCTTTTTTC+TGG - tig0021212:116233-116252 Msa1389160:intron 30.0%
! ACCTCATACTTTTCCATAAA+TGG + tig0021212:116403-116422 None:intergenic 30.0%
ATATACTTGGCAAAGATTGA+TGG - tig0021212:116442-116461 Msa1389160:intron 30.0%
! AAGATTGATGGACATTATTC+TGG - tig0021212:116454-116473 Msa1389160:intron 30.0%
!! GTTTGATTTTGTAGATACAG+GGG + tig0021212:116485-116504 None:intergenic 30.0%
ACAATGAATTACTCCTCTTA+AGG + tig0021212:116552-116571 None:intergenic 30.0%
ATCAAGGATATGAACATAAG+TGG - tig0021212:116679-116698 Msa1389160:intron 30.0%
TGGAAGCAATAAAACAGTTT+GGG - tig0021212:116699-116718 Msa1389160:intron 30.0%
!! TATATTGCTATTTGCTGCTG+CGG - tig0021212:113284-113303 Msa1389160:three_prime_UTR 35.0%
TTGATCTTCTTCTTCTGTTG+AGG + tig0021212:113488-113507 None:intergenic 35.0%
! TCCACTGATGATGAATATAG+CGG - tig0021212:113523-113542 Msa1389160:exon 35.0%
!! CGGTGTTATCGTAGAATTAA+TGG - tig0021212:113543-113562 Msa1389160:CDS 35.0%
! ATTAATGGATCACCCTATCA+TGG - tig0021212:113558-113577 Msa1389160:CDS 35.0%
AGGTAGTAGAATCCATGATA+GGG + tig0021212:113573-113592 None:intergenic 35.0%
AAGGTAGTAGAATCCATGAT+AGG + tig0021212:113574-113593 None:intergenic 35.0%
AGGTGTAAGAATGGATAAGA+AGG + tig0021212:113593-113612 None:intergenic 35.0%
TATTAGTTAGGCAATATGGC+TGG - tig0021212:113785-113804 Msa1389160:intron 35.0%
TAGGAATACGGAACAAAACT+TGG - tig0021212:114100-114119 Msa1389160:intron 35.0%
AGGAATACGGAACAAAACTT+GGG - tig0021212:114101-114120 Msa1389160:intron 35.0%
ACAAAACTTGGGTCTCAATA+AGG - tig0021212:114112-114131 Msa1389160:intron 35.0%
CAAAACTTGGGTCTCAATAA+GGG - tig0021212:114113-114132 Msa1389160:intron 35.0%
AAATGACAAGTTAGTACGCA+AGG + tig0021212:114327-114346 None:intergenic 35.0%
! GCATCTGAAACTATAGTAAG+TGG + tig0021212:114737-114756 None:intergenic 35.0%
!! GCTTGATCAGAAGCATTATT+AGG - tig0021212:114755-114774 Msa1389160:CDS 35.0%
ATCCAGATAACTTTCTACGT+AGG - tig0021212:114891-114910 Msa1389160:intron 35.0%
TTCTACGTAGGTGTGTATAA+AGG - tig0021212:114903-114922 Msa1389160:intron 35.0%
AAACTAGGAATCTTTACCTC+AGG - tig0021212:114941-114960 Msa1389160:intron 35.0%
! CCTAACACCATTTGATAACT+AGG + tig0021212:115305-115324 None:intergenic 35.0%
CCTAGTTATCAAATGGTGTT+AGG - tig0021212:115302-115321 Msa1389160:intron 35.0%
CTAGTGCTTCAAGAAAAAAC+TGG - tig0021212:115327-115346 Msa1389160:intron 35.0%
TAGTAGAAGAAGCTATTCCT+TGG - tig0021212:115432-115451 Msa1389160:intron 35.0%
AGGAGTAAGTAATCTCTTTG+CGG - tig0021212:115530-115549 Msa1389160:intron 35.0%
ATGTCTAGTGCACATTCAAT+AGG + tig0021212:115558-115577 None:intergenic 35.0%
TGCACTAGACATGAACTTAT+TGG - tig0021212:115566-115585 Msa1389160:intron 35.0%
AATTAGGCTTAGAATCACGT+TGG + tig0021212:115615-115634 None:intergenic 35.0%
!! TTGTGGAAGTATTAGCATTC+AGG - tig0021212:115672-115691 Msa1389160:CDS 35.0%
GTGCACCAATAACAATATCA+TGG - tig0021212:115829-115848 Msa1389160:intron 35.0%
ACTTCTCAAAGAATGTCATG+TGG + tig0021212:116023-116042 None:intergenic 35.0%
! TTTTGACATCAAAATCCAGG+AGG - tig0021212:116080-116099 Msa1389160:intron 35.0%
TTAATTGTTATGTGCTGCAG+TGG - tig0021212:116350-116369 Msa1389160:intron 35.0%
TGAGCTGCATATTCATCAAA+TGG + tig0021212:116379-116398 None:intergenic 35.0%
! GCCATTTATGGAAAAGTATG+AGG - tig0021212:116399-116418 Msa1389160:intron 35.0%
!! TGGAAAAGTATGAGGTTTTG+AGG - tig0021212:116407-116426 Msa1389160:intron 35.0%
AATAAAGATGGCTATTTGGC+TGG + tig0021212:116516-116535 None:intergenic 35.0%
! AGCCATCTTTATTTGAATGC+TGG - tig0021212:116523-116542 Msa1389160:CDS 35.0%
CTCCAGCATTCAAATAAAGA+TGG + tig0021212:116528-116547 None:intergenic 35.0%
! CATCTTTATTTGAATGCTGG+AGG - tig0021212:116526-116545 Msa1389160:CDS 35.0%
GTGGAAGCAATAAAACAGTT+TGG - tig0021212:116698-116717 Msa1389160:intron 35.0%
GATAGTAGTTTAGTGTTGTC+TGG + tig0021212:116740-116759 None:intergenic 35.0%
GTAGAGTAAGACATTGTTGT+GGG + tig0021212:116792-116811 None:intergenic 35.0%
AGTAGAGTAAGACATTGTTG+TGG + tig0021212:116793-116812 None:intergenic 35.0%
!! ATATTGCTATTTGCTGCTGC+GGG - tig0021212:113285-113304 Msa1389160:three_prime_UTR 40.0%
ACCGCTATATTCATCATCAG+TGG + tig0021212:113527-113546 None:intergenic 40.0%
TCTAACTGGAAACAACAGGT+AGG - tig0021212:113619-113638 Msa1389160:CDS 40.0%
ATTGTCTTGTAGGGCAAGAA+GGG - tig0021212:114185-114204 Msa1389160:intron 40.0%
TATCTGTCACAATTCTGTGC+AGG - tig0021212:114363-114382 Msa1389160:intron 40.0%
! ATTCTGTGCAGGAAGGTTTT+TGG - tig0021212:114374-114393 Msa1389160:intron 40.0%
TGTGGTGAATGATAAACGAG+AGG - tig0021212:114501-114520 Msa1389160:intron 40.0%
GATCAGGTTTCTGCACAATT+TGG - tig0021212:114563-114582 Msa1389160:CDS 40.0%
GCATTATTAGGTGAGTCCTA+TGG - tig0021212:114767-114786 Msa1389160:intron 40.0%
CACCTACGTAGAAAGTTATC+TGG + tig0021212:114896-114915 None:intergenic 40.0%
AGATGGCTGTCCCTTTATTA+TGG - tig0021212:114988-115007 Msa1389160:intron 40.0%
GATGGCTGTCCCTTTATTAT+GGG - tig0021212:114989-115008 Msa1389160:intron 40.0%
AGATCACATAGGAAGACAGA+TGG + tig0021212:115189-115208 None:intergenic 40.0%
! GTACTGACAACAGATCACAT+AGG + tig0021212:115200-115219 None:intergenic 40.0%
ATTTACCTGATCAGCAACTC+CGG + tig0021212:115388-115407 None:intergenic 40.0%
TAATCTACTCATTCTGCTGC+AGG - tig0021212:115461-115480 Msa1389160:intron 40.0%
AATCTACTCATTCTGCTGCA+GGG - tig0021212:115462-115481 Msa1389160:intron 40.0%
AGAGAGGTCAAAGAAGAAAC+AGG - tig0021212:115510-115529 Msa1389160:intron 40.0%
TCAGATAGACTCGGAATTTG+TGG - tig0021212:115655-115674 Msa1389160:CDS 40.0%
!! TGGAAGTATTAGCATTCAGG+TGG - tig0021212:115675-115694 Msa1389160:CDS 40.0%
!! GGAAGTATTAGCATTCAGGT+GGG - tig0021212:115676-115695 Msa1389160:CDS 40.0%
AGGAAGTTCCAAACTTCCAA+TGG - tig0021212:115740-115759 Msa1389160:intron 40.0%
ATGTTCAGCCATTGGAAGTT+TGG + tig0021212:115751-115770 None:intergenic 40.0%
AAACTTCCAATGGCTGAACA+TGG - tig0021212:115750-115769 Msa1389160:intron 40.0%
AACGTGACCAAGCAAAAACA+AGG + tig0021212:115781-115800 None:intergenic 40.0%
ATATGCAGCTCAGCCATTTA+TGG - tig0021212:116387-116406 Msa1389160:intron 40.0%
TTGTTGTGGGACAAAATTCC+AGG + tig0021212:116779-116798 None:intergenic 40.0%
ACTGGAAACAACAGGTAGGT+AGG - tig0021212:113623-113642 Msa1389160:CDS 45.0%
CATTGTCTTGTAGGGCAAGA+AGG - tig0021212:114184-114203 Msa1389160:intron 45.0%
! ACAAGGTTGGCCAGATGAAT+AGG + tig0021212:114227-114246 None:intergenic 45.0%
TATTCATCTGGCCAACCTTG+TGG - tig0021212:114226-114245 Msa1389160:intron 45.0%
TGTCACAATTCTGTGCAGGA+AGG - tig0021212:114367-114386 Msa1389160:intron 45.0%
TGTGCAGAAACCTGATCATG+TGG + tig0021212:114560-114579 None:intergenic 45.0%
GAAGCACAAACACTCCCATA+TGG - tig0021212:114585-114604 Msa1389160:CDS 45.0%
!! CTTAGTTTTCTGGTCACGCT+AGG + tig0021212:114647-114666 None:intergenic 45.0%
CTAGCGTGACCAGAAAACTA+AGG - tig0021212:114645-114664 Msa1389160:intron 45.0%
ACAAGCTCAACAAGCTCATG+AGG - tig0021212:114703-114722 Msa1389160:intron 45.0%
GTCCTATGGATACACAACTC+CGG - tig0021212:114781-114800 Msa1389160:intron 45.0%
TATGGATACACAACTCCGGT+GGG - tig0021212:114785-114804 Msa1389160:intron 45.0%
GGAAACCTTTACCGTTCTTC+AGG + tig0021212:114813-114832 None:intergenic 45.0%
CACACTCCCATATGGTTAGA+TGG - tig0021212:114971-114990 Msa1389160:intron 45.0%
GGACAGCCATCTAACCATAT+GGG + tig0021212:114980-114999 None:intergenic 45.0%
!! ACTGGACATTTTCAGGGAAC+TGG - tig0021212:115345-115364 Msa1389160:intron 45.0%
!! ATTTTCAGGGAACTGGATCC+TGG - tig0021212:115352-115371 Msa1389160:intron 45.0%
GGATCCTGGAAATTTCCTAC+CGG - tig0021212:115366-115385 Msa1389160:intron 45.0%
AACTCCGGTAGGAAATTTCC+AGG + tig0021212:115373-115392 None:intergenic 45.0%
!!! TCACGTTGGTTCTTTTGTCG+TGG + tig0021212:115601-115620 None:intergenic 45.0%
!!! GGAGAGTCCTTGTTTTTGCT+TGG - tig0021212:115771-115790 Msa1389160:intron 45.0%
GGTAGAGATAGAAGCTGCAA+AGG - tig0021212:116101-116120 Msa1389160:intron 45.0%
! TCCTGTCTCTTTTGTACACC+TGG - tig0021212:116758-116777 Msa1389160:five_prime_UTR 45.0%
TCCAGGTGTACAAAAGAGAC+AGG + tig0021212:116762-116781 None:intergenic 45.0%
AAGGGACAGTTTACCTGTGC+TGG - tig0021212:114131-114150 Msa1389160:intron 50.0%
CTAGTGACGATTTCCAGCAC+AGG + tig0021212:114147-114166 None:intergenic 50.0%
!! TGTAGGGCAAGAAGGGTGTT+TGG - tig0021212:114192-114211 Msa1389160:intron 50.0%
GTGTGTGGCATTTGCAGGAA+TGG + tig0021212:114461-114480 None:intergenic 50.0%
CAAACGCTCCAATACCCACT+CGG + tig0021212:114483-114502 None:intergenic 50.0%
!! AGTGGGTATTGGAGCGTTTG+TGG - tig0021212:114483-114502 Msa1389160:intron 50.0%
TGCAGAGCAACCACATGATC+AGG - tig0021212:114547-114566 Msa1389160:intron 50.0%
CACCGGAGTTGTGTATCCAT+AGG + tig0021212:114786-114805 None:intergenic 50.0%
CTATGGATACACAACTCCGG+TGG - tig0021212:114784-114803 Msa1389160:intron 50.0%
GGGTTCCTGAAGAACGGTAA+AGG - tig0021212:114805-114824 Msa1389160:intron 50.0%
GAAGCACACACACTCCCATA+TGG - tig0021212:114963-114982 Msa1389160:intron 50.0%
GGGACAGCCATCTAACCATA+TGG + tig0021212:114981-115000 None:intergenic 50.0%
TTGTGCAGCAGCAGTAAGAG+AGG - tig0021212:115494-115513 Msa1389160:intron 50.0%
GACTCTCCATGTTCAGCCAT+TGG + tig0021212:115759-115778 None:intergenic 50.0%
AGCGGTCAGATAATACGTGC+TGG - tig0021212:115858-115877 Msa1389160:CDS 50.0%
CAGCTTCTATCTCTACCTCC+TGG + tig0021212:116098-116117 None:intergenic 50.0%
TGAATGCTGGAGGCCTTAAG+AGG - tig0021212:116536-116555 Msa1389160:CDS 50.0%
!! TTGCTATTTGCTGCTGCGGG+AGG - tig0021212:113288-113307 Msa1389160:three_prime_UTR 55.0%
!! ACTCGGTGTGTGGCATTTGC+AGG + tig0021212:114466-114485 None:intergenic 55.0%
TGCAAATGCCACACACCGAG+TGG - tig0021212:114465-114484 Msa1389160:intron 55.0%
GCAAATGCCACACACCGAGT+GGG - tig0021212:114466-114485 Msa1389160:intron 55.0%
!! TCCAATACCCACTCGGTGTG+TGG + tig0021212:114476-114495 None:intergenic 55.0%
! TCCGGTGGGTTCCTGAAGAA+CGG - tig0021212:114799-114818 Msa1389160:intron 55.0%
ACCGTTCTTCAGGAACCCAC+CGG + tig0021212:114803-114822 None:intergenic 55.0%
TCCTACCGGAGTTGCTGATC+AGG - tig0021212:115380-115399 Msa1389160:intron 55.0%
ACCTGATCAGCAACTCCGGT+AGG + tig0021212:115384-115403 None:intergenic 55.0%
GCCACACACCGAGTGGGTAT+TGG - tig0021212:114472-114491 Msa1389160:intron 60.0%
! GGGAGTGTGTGTGCTTCCTG+AGG + tig0021212:114960-114979 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0021212 gene 113278 116827 113278 ID=Msa1389160;Name=Msa1389160
tig0021212 mRNA 113278 116827 113278 ID=Msa1389160-mRNA-1;Parent=Msa1389160;Name=Msa1389160-mRNA-1;_AED=0.25;_eAED=0.25;_QI=100|0.87|0.88|1|0.87|0.77|9|254|285
tig0021212 exon 113278 113735 113278 ID=Msa1389160-mRNA-1:exon:11487;Parent=Msa1389160-mRNA-1
tig0021212 exon 113983 114091 113983 ID=Msa1389160-mRNA-1:exon:11486;Parent=Msa1389160-mRNA-1
tig0021212 exon 114412 114446 114412 ID=Msa1389160-mRNA-1:exon:11485;Parent=Msa1389160-mRNA-1
tig0021212 exon 114554 114622 114554 ID=Msa1389160-mRNA-1:exon:11484;Parent=Msa1389160-mRNA-1
tig0021212 exon 114704 114781 114704 ID=Msa1389160-mRNA-1:exon:11483;Parent=Msa1389160-mRNA-1
tig0021212 exon 115583 115720 115583 ID=Msa1389160-mRNA-1:exon:11482;Parent=Msa1389160-mRNA-1
tig0021212 exon 115843 115908 115843 ID=Msa1389160-mRNA-1:exon:11481;Parent=Msa1389160-mRNA-1
tig0021212 exon 116469 116636 116469 ID=Msa1389160-mRNA-1:exon:11480;Parent=Msa1389160-mRNA-1
tig0021212 exon 116737 116827 116737 ID=Msa1389160-mRNA-1:exon:11479;Parent=Msa1389160-mRNA-1
tig0021212 five_prime_UTR 116737 116827 116737 ID=Msa1389160-mRNA-1:five_prime_utr;Parent=Msa1389160-mRNA-1
tig0021212 five_prime_UTR 116628 116636 116628 ID=Msa1389160-mRNA-1:five_prime_utr;Parent=Msa1389160-mRNA-1
tig0021212 CDS 116469 116627 116469 ID=Msa1389160-mRNA-1:cds;Parent=Msa1389160-mRNA-1
tig0021212 CDS 115843 115908 115843 ID=Msa1389160-mRNA-1:cds;Parent=Msa1389160-mRNA-1
tig0021212 CDS 115583 115720 115583 ID=Msa1389160-mRNA-1:cds;Parent=Msa1389160-mRNA-1
tig0021212 CDS 114704 114781 114704 ID=Msa1389160-mRNA-1:cds;Parent=Msa1389160-mRNA-1
tig0021212 CDS 114554 114622 114554 ID=Msa1389160-mRNA-1:cds;Parent=Msa1389160-mRNA-1
tig0021212 CDS 114412 114446 114412 ID=Msa1389160-mRNA-1:cds;Parent=Msa1389160-mRNA-1
tig0021212 CDS 113983 114091 113983 ID=Msa1389160-mRNA-1:cds;Parent=Msa1389160-mRNA-1
tig0021212 CDS 113532 113735 113532 ID=Msa1389160-mRNA-1:cds;Parent=Msa1389160-mRNA-1
tig0021212 three_prime_UTR 113278 113531 113278 ID=Msa1389160-mRNA-1:three_prime_utr;Parent=Msa1389160-mRNA-1
Gene Sequence

>Msa1389160

ATGTCAGCCTCAACAGAAGAAGAAGATCAAATTCAACTACTTACATCCACTGATGATGAATATAGCGGTGTTATCGTAGAATTAATGGATCACCCTATCATGGATTCTACTACCTTCTTATCCATTCTTACACCTTCAATTTCTAACTGGAAACAACAGGGCAAGAAGGGTGTTTGGATAAAATTACCTATTCATCTGGCCAACCTTGTGGAAACTTTAATTAATGAAGGTTTTTGGTATCACCATGCAGAACCAAAATATTTGATGCTTGTACATTGGATTGCAGACAGTGCAAACACCATTCCTGCAAATGCCACACACCGAGTGGGTATTGGAGCGTTTGTGGTGAATGATAAACGAGAGGTTCTAGTGCTTCAAGAAAAAACTGGACATTTTCAGGGAACTGGATCCTGGAAATTTCCTACCGGAGTTGCTGATCAGGGAGAAGACATTTGTGCAGCAGCAGTAAGAGAGGTCAAAGAAGAAACAGGAGTAAGTAATCTCTTTGCGATAGACTCGGAATTTGTGGAAGTATTAGCATTCAGACAAAGCCACATGACATTCTTTGAGAAGTCAGATCTATTCTTTGTGTGCTTGTTGCGCCCTCTTTCTTTTGACATCAAAATCCAGGAGGTAGAGATAGAAGCTGCAAAGTGGATGCCATTTGATGAATATGCAGCTCAGCCATTTATGGAAAAGTATGAGGTTTTGAGGTACATTAATGACATATACTTGGCAAAGATTGATGGACATTATTCTGGATTTGCCCCTGTATCTACAAAATCAAACTTCTCTAACCAGCCAAATAGCCATCTTTATTTGAATGCTGGAGGCCTTAAGAGGAGTAATTCATTGTAA

Protein sequence

>Msa1389160

MSASTEEEDQIQLLTSTDDEYSGVIVELMDHPIMDSTTFLSILTPSISNWKQQGKKGVWIKLPIHLANLVETLINEGFWYHHAEPKYLMLVHWIADSANTIPANATHRVGIGAFVVNDKREVLVLQEKTGHFQGTGSWKFPTGVADQGEDICAAAVREVKEETGVSNLFAIDSEFVEVLAFRQSHMTFFEKSDLFFVCLLRPLSFDIKIQEVEIEAAKWMPFDEYAAQPFMEKYEVLRYINDIYLAKIDGHYSGFAPVSTKSNFSNQPNSHLYLNAGGLKRSNSL*