Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0953150 | KEH26375.1 | 98.361 | 183 | 2 | 1 | 1 | 182 | 87 | 269 | 2.60e-127 | 369 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0953150 | sp|Q9FLX7|NDUA5_ARATH | 76.433 | 157 | 36 | 1 | 1 | 157 | 1 | 156 | 8.79e-85 | 250 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0953150 | A0A072UKP4 | 98.361 | 183 | 2 | 1 | 1 | 182 | 87 | 269 | 1.24e-127 | 369 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002490 | Msa0953150 | 0.842532 | 2.442145e-58 | -8.615850e-47 |
| Msa0003780 | Msa0953150 | 0.808633 | 2.813882e-50 | -8.615850e-47 |
| Msa0004860 | Msa0953150 | 0.802191 | 6.306362e-49 | -8.615850e-47 |
| Msa0016670 | Msa0953150 | 0.810845 | 9.414750e-51 | -8.615850e-47 |
| Msa0044020 | Msa0953150 | 0.805302 | 1.425304e-49 | -8.615850e-47 |
| Msa0046750 | Msa0953150 | 0.800002 | 1.767794e-48 | -8.615850e-47 |
| Msa0049650 | Msa0953150 | -0.812954 | 3.268439e-51 | -8.615850e-47 |
| Msa0053570 | Msa0953150 | 0.803623 | 3.191352e-49 | -8.615850e-47 |
| Msa0074320 | Msa0953150 | 0.820341 | 7.221268e-53 | -8.615850e-47 |
| Msa0082280 | Msa0953150 | 0.809021 | 2.324611e-50 | -8.615850e-47 |
| Msa0094120 | Msa0953150 | 0.828487 | 8.750207e-55 | -8.615850e-47 |
| Msa0623700 | Msa0953150 | 0.821229 | 4.511894e-53 | -8.615850e-47 |
| Msa0657790 | Msa0953150 | 0.804232 | 2.384970e-49 | -8.615850e-47 |
| Msa0661620 | Msa0953150 | 0.813046 | 3.120213e-51 | -8.615850e-47 |
| Msa0680240 | Msa0953150 | 0.801726 | 7.858446e-49 | -8.615850e-47 |
| Msa0703230 | Msa0953150 | 0.815769 | 7.799622e-52 | -8.615850e-47 |
| Msa0744030 | Msa0953150 | 0.807922 | 3.988567e-50 | -8.615850e-47 |
| Msa0143430 | Msa0953150 | 0.805220 | 1.482957e-49 | -8.615850e-47 |
| Msa0186890 | Msa0953150 | 0.815649 | 8.298480e-52 | -8.615850e-47 |
| Msa0187690 | Msa0953150 | 0.819118 | 1.373335e-52 | -8.615850e-47 |
| Msa0191050 | Msa0953150 | 0.823938 | 1.057804e-53 | -8.615850e-47 |
| Msa0211840 | Msa0953150 | 0.807012 | 6.221597e-50 | -8.615850e-47 |
| Msa0225740 | Msa0953150 | 0.837193 | 6.003900e-57 | -8.615850e-47 |
| Msa0233350 | Msa0953150 | 0.817922 | 2.565233e-52 | -8.615850e-47 |
| Msa0402330 | Msa0953150 | 0.831398 | 1.707759e-55 | -8.615850e-47 |
| Msa0424920 | Msa0953150 | 0.801657 | 8.119870e-49 | -8.615850e-47 |
| Msa0264570 | Msa0953150 | 0.833335 | 5.658496e-56 | -8.615850e-47 |
| Msa0267970 | Msa0953150 | 0.801848 | 7.417499e-49 | -8.615850e-47 |
| Msa0355270 | Msa0953150 | 0.828490 | 8.735508e-55 | -8.615850e-47 |
| Msa0363620 | Msa0953150 | 0.803142 | 4.014657e-49 | -8.615850e-47 |
| Msa0508590 | Msa0953150 | 0.804739 | 1.869504e-49 | -8.615850e-47 |
| Msa0508630 | Msa0953150 | 0.828490 | 8.735508e-55 | -8.615850e-47 |
| Msa0541860 | Msa0953150 | 0.816943 | 4.259982e-52 | -8.615850e-47 |
| Msa0888580 | Msa0953150 | 0.930523 | 1.446281e-93 | -8.615850e-47 |
| Msa0915280 | Msa0953150 | 0.897950 | 8.547610e-77 | -8.615850e-47 |
| Msa0953150 | Msa0966270 | 0.828437 | 8.996185e-55 | -8.615850e-47 |
| Msa0953150 | Msa1043690 | 0.813648 | 2.301058e-51 | -8.615850e-47 |
| Msa0953150 | Msa1082700 | 0.828199 | 1.026763e-54 | -8.615850e-47 |
| Msa0953150 | Msa1083210 | 0.804052 | 2.598754e-49 | -8.615850e-47 |
| Msa0953150 | Msa1126510 | 0.803653 | 3.145581e-49 | -8.615850e-47 |
| Msa0953150 | Msa1126770 | 0.819965 | 8.801476e-53 | -8.615850e-47 |
| Msa0953150 | Msa1127830 | 0.801254 | 9.820369e-49 | -8.615850e-47 |
| Msa0953150 | Msa1127890 | 0.844637 | 6.680893e-59 | -8.615850e-47 |
| Msa0953150 | Msa1134110 | 0.807667 | 4.519244e-50 | -8.615850e-47 |
| Msa0953150 | Msa1165870 | 0.809037 | 2.305858e-50 | -8.615850e-47 |
| Msa0953150 | Msa1166410 | 0.800454 | 1.430491e-48 | -8.615850e-47 |
| Msa0953150 | Msa1166860 | 0.808782 | 2.615416e-50 | -8.615850e-47 |
| Msa0953150 | Msa1168950 | 0.800648 | 1.305688e-48 | -8.615850e-47 |
| Msa0953150 | Msa1184370 | 0.803901 | 2.794229e-49 | -8.615850e-47 |
| Msa0953150 | Msa1224430 | 0.813149 | 2.961624e-51 | -8.615850e-47 |
| Msa0953150 | Msa1292830 | 0.829931 | 3.905849e-55 | -8.615850e-47 |
| Msa0953150 | Msa1304820 | 0.831778 | 1.376295e-55 | -8.615850e-47 |
| Msa0953150 | Msa1307950 | 0.830483 | 2.862598e-55 | -8.615850e-47 |
| Msa0953150 | Msa1316780 | 0.801419 | 9.084341e-49 | -8.615850e-47 |
| Msa0953150 | Msa1316830 | 0.802183 | 6.330600e-49 | -8.615850e-47 |
| Msa0953150 | Msa1332480 | 0.812624 | 3.860022e-51 | -8.615850e-47 |
| Msa0953150 | Msa1333760 | 0.804808 | 1.808255e-49 | -8.615850e-47 |
| Msa0953150 | Msa1370860 | 0.809070 | 2.268990e-50 | -8.615850e-47 |
| Msa0953150 | Msa1374120 | 0.822818 | 1.932256e-53 | -8.615850e-47 |
| Msa0953150 | Msa1389160 | 0.810204 | 1.294990e-50 | -8.615850e-47 |
| Msa0953150 | Msa1392200 | 0.814914 | 1.208606e-51 | -8.615850e-47 |
| Msa0953150 | Msa1397810 | 0.826297 | 2.930939e-54 | -8.615850e-47 |
| Msa0953150 | Msa1442850 | 0.843824 | 1.104485e-58 | -8.615850e-47 |
| Msa0953150 | Msa1457400 | 0.831805 | 1.355770e-55 | -8.615850e-47 |
| Msa0953150 | Msa1457440 | 0.804270 | 2.341109e-49 | -8.615850e-47 |
| Msa0953150 | Msa1465080 | 0.823478 | 1.355375e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0953150 | MtrunA17_Chr6g0470231 | 98.361 | 183 | 2 | 1 | 1 | 182 | 87 | 269 | 2.39e-131 | 369 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0953150 | AT5G52840.1 | 76.433 | 157 | 36 | 1 | 1 | 157 | 1 | 156 | 8.93e-86 | 250 |
| Msa0953150 | AT5G52840.2 | 80.769 | 104 | 20 | 0 | 1 | 104 | 1 | 104 | 1.39e-56 | 174 |
| Msa0953150 | AT4G28005.1 | 40.506 | 158 | 37 | 4 | 1 | 157 | 1 | 102 | 4.66e-24 | 91.7 |
Find 54 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGATTCAACTGTCTTTC+AGG | 0.138753 | 6_3:+48997676 | Msa0953150:three_prime_UTR |
| TGTCTTTATTCTTGCCATTA+AGG | 0.186637 | 6_3:-48993119 | None:intergenic |
| ATTTAGTTTGATGCAATAAA+AGG | 0.239799 | 6_3:-48997636 | None:intergenic |
| TTACGATACCCTTCATCTTC+TGG | 0.262187 | 6_3:-48993235 | None:intergenic |
| ATCAACACTTCTCTTGCATT+TGG | 0.286655 | 6_3:-48993172 | None:intergenic |
| AGCGATGGCACGACCCTTAA+TGG | 0.290344 | 6_3:+48993105 | Msa0953150:CDS |
| GTCTTTATTCTTGCCATTAA+GGG | 0.290759 | 6_3:-48993118 | None:intergenic |
| TCAACACTTCTCTTGCATTT+GGG | 0.351069 | 6_3:-48993171 | None:intergenic |
| AGAGCTTTGAATTCTCCTTT+TGG | 0.357093 | 6_3:+48997603 | Msa0953150:three_prime_UTR |
| CTTTACAAGTCATAGACTTA+AGG | 0.359250 | 6_3:+48993270 | Msa0953150:CDS |
| AGACACCTTAGATGCACTTA+TGG | 0.361826 | 6_3:+48997468 | Msa0953150:CDS |
| ATCTCAATTTCGTGATCATC+AGG | 0.365884 | 6_3:-48997373 | None:intergenic |
| TATTGCAGAATGGGATCCTT+GGG | 0.383342 | 6_3:+48997345 | Msa0953150:intron |
| GTCAGCCATAAGTGCATCTA+AGG | 0.386612 | 6_3:-48997473 | None:intergenic |
| GAAATGGAGTGTTGTTGTTA+TGG | 0.389111 | 6_3:-48993011 | None:intergenic |
| AAGGTGTCTTGAAACTCCTT+AGG | 0.391049 | 6_3:-48997454 | None:intergenic |
| TTGTCAAGAGGAAGAAGATT+GGG | 0.415064 | 6_3:+48993294 | Msa0953150:CDS |
| TTTGTCAAGAGGAAGAAGAT+TGG | 0.415984 | 6_3:+48993293 | Msa0953150:CDS |
| TCTAATGTAGCTGAAGTTCA+TGG | 0.425368 | 6_3:-48997583 | None:intergenic |
| AAACTCATTGGCTATATGAT+TGG | 0.433002 | 6_3:+48993385 | Msa0953150:CDS |
| GACCCTTAACGAGATCAAAA+AGG | 0.437941 | 6_3:+48993210 | Msa0953150:CDS |
| GCAAGAATAAAGACAACAAC+AGG | 0.445081 | 6_3:+48993127 | Msa0953150:CDS |
| CGGTGTTGAGGAACGTGCTT+CGG | 0.452618 | 6_3:-48997418 | None:intergenic |
| TCAGATTCAACTGTCTTTCA+GGG | 0.453671 | 6_3:+48997677 | Msa0953150:three_prime_UTR |
| TGAGGAACGTGCTTCGGAAT+TGG | 0.463485 | 6_3:-48997412 | None:intergenic |
| CAAGATGAACTCAAACTCAT+TGG | 0.466880 | 6_3:+48993373 | Msa0953150:CDS |
| ACAAGAAAAGATGGTGCTGC+TGG | 0.482122 | 6_3:+48997535 | Msa0953150:CDS |
| GTATTGCAGAATGGGATCCT+TGG | 0.482980 | 6_3:+48997344 | Msa0953150:intron |
| ATTGAGAATCGTCTTGGTTG+TGG | 0.487668 | 6_3:+48993322 | Msa0953150:CDS |
| GAATCGTCTTGGTTGTGGTC+AGG | 0.495827 | 6_3:+48993327 | Msa0953150:CDS |
| ATCAAAGATGGAAAAGATAG+AGG | 0.503646 | 6_3:+48997498 | Msa0953150:CDS |
| TATGGCTGACCCATCAAAGA+TGG | 0.511515 | 6_3:+48997486 | Msa0953150:CDS |
| AAAGGAAAATCACATCCAAA+AGG | 0.525164 | 6_3:-48997618 | None:intergenic |
| AGGTGTCTTGAAACTCCTTA+GGG | 0.525753 | 6_3:-48997453 | None:intergenic |
| TTGTTATGGAGGTGAACTGT+TGG | 0.528241 | 6_3:-48992997 | None:intergenic |
| GAGAAGATTGAGAATCGTCT+TGG | 0.529191 | 6_3:+48993316 | Msa0953150:CDS |
| GTGGCTAAAACAAGAAAAGA+TGG | 0.539846 | 6_3:+48997526 | Msa0953150:CDS |
| TTGTATGCATGAAATGACTT+TGG | 0.540500 | 6_3:+48997761 | Msa0953150:three_prime_UTR |
| TTAAGGGTCGTGCCATCGCT+CGG | 0.541058 | 6_3:-48993102 | None:intergenic |
| CCGTCCTCCTCGTCTCCCTA+AGG | 0.545794 | 6_3:+48997438 | Msa0953150:CDS |
| TAGACTTAAGGTTTGTCAAG+AGG | 0.583898 | 6_3:+48993282 | Msa0953150:CDS |
| AGACGAGGAGGACGGTGTTG+AGG | 0.584235 | 6_3:-48997430 | None:intergenic |
| AAGACAACAACAGGAATCGT+AGG | 0.600187 | 6_3:+48993136 | Msa0953150:CDS |
| CAAGATGTTTCTCCGAGCGA+TGG | 0.602157 | 6_3:+48993090 | Msa0953150:exon |
| AAAAGGTTCCAGAAGATGAA+GGG | 0.602923 | 6_3:+48993227 | Msa0953150:CDS |
| ATGGAGTGTTGTTGTTATGG+AGG | 0.606719 | 6_3:-48993008 | None:intergenic |
| GGAAAAGATAGAGGAACTTG+TGG | 0.609007 | 6_3:+48997507 | Msa0953150:CDS |
| TCTCAATTTCGTGATCATCA+GGG | 0.633734 | 6_3:-48997372 | None:intergenic |
| TGATCATCAGGGATACCCCA+AGG | 0.657129 | 6_3:-48997361 | None:intergenic |
| CCTTAGGGAGACGAGGAGGA+CGG | 0.660867 | 6_3:-48997438 | None:intergenic |
| TGATGATCACGAAATTGAGA+TGG | 0.663792 | 6_3:+48997375 | Msa0953150:CDS |
| TGAAACTCCTTAGGGAGACG+AGG | 0.673297 | 6_3:-48997445 | None:intergenic |
| AACTCCTTAGGGAGACGAGG+AGG | 0.696168 | 6_3:-48997442 | None:intergenic |
| ATTGCAGAATGGGATCCTTG+GGG | 0.697431 | 6_3:+48997346 | Msa0953150:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTTATTATTTAATCATGAT+GGG | - | chr6_3:48995009-48995028 | None:intergenic | 15.0% |
| !!! | ATCTCTTTATTTGTATATAA+AGG | + | chr6_3:48995056-48995075 | Msa0953150:intron | 15.0% |
| !!! | TCTCTTTATTTGTATATAAA+GGG | + | chr6_3:48995057-48995076 | Msa0953150:intron | 15.0% |
| !! | AATTATTTCATAATCAATTC+TGG | - | chr6_3:48995388-48995407 | None:intergenic | 15.0% |
| !!! | TAACATAATTGATTTATGTT+TGG | + | chr6_3:48995444-48995463 | Msa0953150:intron | 15.0% |
| !!! | TATAATGTGTATTTTATGTT+TGG | + | chr6_3:48997095-48997114 | Msa0953150:intron | 15.0% |
| !!! | TTTTGAATTTTTTTGTGATC+TGG | + | chr6_3:48993446-48993465 | Msa0953150:intron | 20.0% |
| !! | GTTAGGAATAATGATAAATT+GGG | + | chr6_3:48993516-48993535 | Msa0953150:intron | 20.0% |
| !! | CCATAATCAATTATTATCAT+TGG | - | chr6_3:48994133-48994152 | None:intergenic | 20.0% |
| !! | CCAATGATAATAATTGATTA+TGG | + | chr6_3:48994130-48994149 | Msa0953150:intron | 20.0% |
| !! | AATTCAATACTCTTATCAAA+AGG | + | chr6_3:48994230-48994249 | Msa0953150:intron | 20.0% |
| !! | AAATATCACATTTGAATCTA+AGG | - | chr6_3:48994295-48994314 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTGTTACAGAGA+GGG | - | chr6_3:48994416-48994435 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTGTTACAGAG+AGG | - | chr6_3:48994417-48994436 | None:intergenic | 20.0% |
| !!! | GATCAAAATTCATTGATTTT+AGG | + | chr6_3:48994659-48994678 | Msa0953150:intron | 20.0% |
| !!! | TTTGGTTATTTTGTTTTTCT+AGG | + | chr6_3:48994750-48994769 | Msa0953150:intron | 20.0% |
| !!! | TTGGTTATTTTGTTTTTCTA+GGG | + | chr6_3:48994751-48994770 | Msa0953150:intron | 20.0% |
| !!! | TTTTACTATTTGTTGCAAAT+TGG | + | chr6_3:48994903-48994922 | Msa0953150:intron | 20.0% |
| !!! | TTTACTATTTGTTGCAAATT+GGG | + | chr6_3:48994904-48994923 | Msa0953150:intron | 20.0% |
| !! | CTCTTATTATTTAATCATGA+TGG | - | chr6_3:48995010-48995029 | None:intergenic | 20.0% |
| !! | CATCATGATTAAATAATAAG+AGG | + | chr6_3:48995008-48995027 | Msa0953150:intron | 20.0% |
| !! | TTCTAGTATTTAACTCTAAT+GGG | - | chr6_3:48995034-48995053 | None:intergenic | 20.0% |
| !! | ATTCTAGTATTTAACTCTAA+TGG | - | chr6_3:48995035-48995054 | None:intergenic | 20.0% |
| !!! | CTCTTTATTTGTATATAAAG+GGG | + | chr6_3:48995058-48995077 | Msa0953150:intron | 20.0% |
| !!! | TTTTCCATTTGTATCAATAA+AGG | + | chr6_3:48995210-48995229 | Msa0953150:intron | 20.0% |
| !! | AAAAAGTAGGGAATTTATTT+GGG | + | chr6_3:48995334-48995353 | Msa0953150:intron | 20.0% |
| !!! | GATTTTGAGATAATTGATTT+TGG | + | chr6_3:48995408-48995427 | Msa0953150:intron | 20.0% |
| !!! | TTGTTGTTCTTTTGTATTAT+CGG | + | chr6_3:48995863-48995882 | Msa0953150:intron | 20.0% |
| !! | TTAGACATATATTCAACTAT+AGG | - | chr6_3:48996261-48996280 | None:intergenic | 20.0% |
| !!! | TTCTATGTTGATTAATATGT+GGG | - | chr6_3:48996513-48996532 | None:intergenic | 20.0% |
| !!! | TAAAAAAATAGGTTTTTCGA+AGG | - | chr6_3:48996580-48996599 | None:intergenic | 20.0% |
| !! | AAATTTAAACTCATAACACA+AGG | - | chr6_3:48996888-48996907 | None:intergenic | 20.0% |
| !!! | TTTAGGATCTTCAAAAATTT+AGG | - | chr6_3:48996970-48996989 | None:intergenic | 20.0% |
| !!! | AACTAAATGTCTAATGTTTT+AGG | - | chr6_3:48996987-48997006 | None:intergenic | 20.0% |
| !! | AAAACATTAGACATTTAGTT+AGG | + | chr6_3:48996987-48997006 | Msa0953150:intron | 20.0% |
| !! | AAACATTAGACATTTAGTTA+GGG | + | chr6_3:48996988-48997007 | Msa0953150:intron | 20.0% |
| !! | TACGAAATACTAATAAAGAA+TGG | + | chr6_3:48997071-48997090 | Msa0953150:intron | 20.0% |
| !!! | TTTTTTTCACTTCATGAATT+TGG | + | chr6_3:48997169-48997188 | Msa0953150:intron | 20.0% |
| !! | ATCATCAAACAATTAAGATT+TGG | - | chr6_3:48997301-48997320 | None:intergenic | 20.0% |
| !!! | ATTTAGTTTGATGCAATAAA+AGG | - | chr6_3:48997639-48997658 | None:intergenic | 20.0% |
| !! | TTTTTACAATGTTTGTGTTG+AGG | + | chr6_3:48993494-48993513 | Msa0953150:intron | 25.0% |
| ! | GGTTAGGAATAATGATAAAT+TGG | + | chr6_3:48993515-48993534 | Msa0953150:intron | 25.0% |
| !! | TTTGCGTTTTTATACAGTAA+GGG | + | chr6_3:48993667-48993686 | Msa0953150:intron | 25.0% |
| ! | TTTCATCAATGCATAAAGAA+AGG | - | chr6_3:48993715-48993734 | None:intergenic | 25.0% |
| !! | ATGATCTATTTTGTGTTTTG+AGG | + | chr6_3:48993847-48993866 | Msa0953150:intron | 25.0% |
| ! | ACATTCAATTCATTCATTTG+TGG | + | chr6_3:48994027-48994046 | Msa0953150:intron | 25.0% |
| !!! | TGATCTGTTTTGTGTTTTTT+AGG | + | chr6_3:48994057-48994076 | Msa0953150:intron | 25.0% |
| !! | TTCTGTATTTTATTGAGGTT+AGG | + | chr6_3:48994083-48994102 | Msa0953150:intron | 25.0% |
| !!! | AATGAATTTTGATCCATCAA+GGG | - | chr6_3:48994653-48994672 | None:intergenic | 25.0% |
| !!! | ATTTTGTTTTTCTAGGGTTT+TGG | + | chr6_3:48994757-48994776 | Msa0953150:intron | 25.0% |
| ! | GAATGAAAGTTAGATGAAAA+TGG | + | chr6_3:48994815-48994834 | Msa0953150:intron | 25.0% |
| ! | TAATTAGTAGGTCGTTTATT+AGG | + | chr6_3:48994959-48994978 | Msa0953150:intron | 25.0% |
| ! | TTAGGTAGATTATTAGTAAG+TGG | + | chr6_3:48994983-48995002 | Msa0953150:intron | 25.0% |
| ! | GATGGCAATTAAATAAAACA+GGG | - | chr6_3:48995238-48995257 | None:intergenic | 25.0% |
| ! | AGATGGCAATTAAATAAAAC+AGG | - | chr6_3:48995239-48995258 | None:intergenic | 25.0% |
| ! | CAAACAAGAAAATAAACAGA+TGG | - | chr6_3:48995256-48995275 | None:intergenic | 25.0% |
| !!! | CATCTGTTTATTTTCTTGTT+TGG | + | chr6_3:48995254-48995273 | Msa0953150:intron | 25.0% |
| ! | GAAAAAGTAGGGAATTTATT+TGG | + | chr6_3:48995333-48995352 | Msa0953150:intron | 25.0% |
| !! | TGAAATTAAGAGAAAGTGTA+AGG | + | chr6_3:48995557-48995576 | Msa0953150:intron | 25.0% |
| !! | GAAATTAAGAGAAAGTGTAA+GGG | + | chr6_3:48995558-48995577 | Msa0953150:intron | 25.0% |
| ! | AAGCTAAAAGTGATTTAACT+TGG | - | chr6_3:48995721-48995740 | None:intergenic | 25.0% |
| ! | AATCCATATTCGTATATGTT+TGG | - | chr6_3:48995777-48995796 | None:intergenic | 25.0% |
| ! | ATTGAGAAAATTCTAAACCA+TGG | - | chr6_3:48995825-48995844 | None:intergenic | 25.0% |
| !! | TGTTGTTCTTTTGTATTATC+GGG | + | chr6_3:48995864-48995883 | Msa0953150:intron | 25.0% |
| ! | ACAATAAATACGGTATAACA+CGG | - | chr6_3:48996146-48996165 | None:intergenic | 25.0% |
| ! | ATATATTCAACTATAGGTGT+CGG | - | chr6_3:48996255-48996274 | None:intergenic | 25.0% |
| ! | ATGTGGTTACATTCAATTAT+TGG | + | chr6_3:48996313-48996332 | Msa0953150:intron | 25.0% |
| !!! | CTTGTTTTCTCATTGAAAAA+AGG | - | chr6_3:48996473-48996492 | None:intergenic | 25.0% |
| !! | CTTCTATGTTGATTAATATG+TGG | - | chr6_3:48996514-48996533 | None:intergenic | 25.0% |
| ! | CACATATTAATCAACATAGA+AGG | + | chr6_3:48996512-48996531 | Msa0953150:intron | 25.0% |
| ! | TAAGAGCCTGTATTAAAAAA+AGG | - | chr6_3:48996823-48996842 | None:intergenic | 25.0% |
| ! | AACATTAGACATTTAGTTAG+GGG | + | chr6_3:48996989-48997008 | Msa0953150:intron | 25.0% |
| ! | GTATTTCGTAAAATTCACAT+CGG | - | chr6_3:48997061-48997080 | None:intergenic | 25.0% |
| !! | CATGAATTTGGTAACTATTA+AGG | + | chr6_3:48997181-48997200 | Msa0953150:intron | 25.0% |
| GTCTTTATTCTTGCCATTAA+GGG | - | chr6_3:48993121-48993140 | None:intergenic | 30.0% | |
| TGTCTTTATTCTTGCCATTA+AGG | - | chr6_3:48993122-48993141 | None:intergenic | 30.0% | |
| ! | AACCTTTTTGATCTCGTTAA+GGG | - | chr6_3:48993215-48993234 | None:intergenic | 30.0% |
| CTTTACAAGTCATAGACTTA+AGG | + | chr6_3:48993270-48993289 | Msa0953150:CDS | 30.0% | |
| ! | AAACTCATTGGCTATATGAT+TGG | + | chr6_3:48993385-48993404 | Msa0953150:CDS | 30.0% |
| !! | CGATCTGATTTGTGTATTTT+AGG | + | chr6_3:48993627-48993646 | Msa0953150:intron | 30.0% |
| ! | GTTTGCGTTTTTATACAGTA+AGG | + | chr6_3:48993666-48993685 | Msa0953150:intron | 30.0% |
| !!! | TTTTAGAGTGTAAAGTGAGT+AGG | + | chr6_3:48993914-48993933 | Msa0953150:intron | 30.0% |
| ! | GGATGTTCTGTATTTTATTG+AGG | + | chr6_3:48994078-48994097 | Msa0953150:intron | 30.0% |
| TACTAACAAATGACTAGACT+GGG | - | chr6_3:48994334-48994353 | None:intergenic | 30.0% | |
| ! | TTTGTTAGTAGCTGATGTTT+TGG | + | chr6_3:48994344-48994363 | Msa0953150:intron | 30.0% |
| ! | TTGTTAGTAGCTGATGTTTT+GGG | + | chr6_3:48994345-48994364 | Msa0953150:intron | 30.0% |
| CAAATTATTAGCACTGTTGA+CGG | + | chr6_3:48994534-48994553 | Msa0953150:intron | 30.0% | |
| AAATTATTAGCACTGTTGAC+GGG | + | chr6_3:48994535-48994554 | Msa0953150:intron | 30.0% | |
| ! | GGTTGATATTTCAATCACTT+AGG | - | chr6_3:48994632-48994651 | None:intergenic | 30.0% |
| ATTGAAATATCAACCCTTGA+TGG | + | chr6_3:48994637-48994656 | Msa0953150:intron | 30.0% | |
| !! | CAATGAATTTTGATCCATCA+AGG | - | chr6_3:48994654-48994673 | None:intergenic | 30.0% |
| !! | GATTTTAGGTGATTTCACTT+TGG | + | chr6_3:48994673-48994692 | Msa0953150:intron | 30.0% |
| ! | GACTGTTATGTTATGTGTTT+TGG | + | chr6_3:48994732-48994751 | Msa0953150:intron | 30.0% |
| GAAAGTTAGATGAAAATGGT+AGG | + | chr6_3:48994819-48994838 | Msa0953150:intron | 30.0% | |
| GAAAATGGTAGGCAATTATT+TGG | + | chr6_3:48994830-48994849 | Msa0953150:intron | 30.0% | |
| TTAAAACACCCTCTCATATT+AGG | - | chr6_3:48994938-48994957 | None:intergenic | 30.0% | |
| !! | GGGTGTTTTAAGTAATTAGT+AGG | + | chr6_3:48994947-48994966 | Msa0953150:intron | 30.0% |
| GTATATAAAGGGGAATTCTT+TGG | + | chr6_3:48995068-48995087 | Msa0953150:intron | 30.0% | |
| !!! | ATTCTTTGGAGTTTTAGAGT+TGG | + | chr6_3:48995082-48995101 | Msa0953150:intron | 30.0% |
| ! | ACGGAATAACTTTTCTGTTT+AGG | + | chr6_3:48995105-48995124 | Msa0953150:intron | 30.0% |
| ! | CGGAATAACTTTTCTGTTTA+GGG | + | chr6_3:48995106-48995125 | Msa0953150:intron | 30.0% |
| GTTACTGTTAATTCGATTCT+AGG | + | chr6_3:48995281-48995300 | Msa0953150:intron | 30.0% | |
| !! | TGTTGTCGATTTATGATGTT+TGG | + | chr6_3:48995488-48995507 | Msa0953150:intron | 30.0% |
| !! | GTTGTCGATTTATGATGTTT+GGG | + | chr6_3:48995489-48995508 | Msa0953150:intron | 30.0% |
| ! | CATACTAGAATCGATTCAAT+TGG | + | chr6_3:48995605-48995624 | Msa0953150:intron | 30.0% |
| CAACCAAACATATACGAATA+TGG | + | chr6_3:48995771-48995790 | Msa0953150:intron | 30.0% | |
| ATATAGTATGTAATGCTCCA+TGG | + | chr6_3:48995805-48995824 | Msa0953150:intron | 30.0% | |
| CATAGAGCATATTATGTACA+AGG | - | chr6_3:48995958-48995977 | None:intergenic | 30.0% | |
| ATGTATGTTGTTCATTCATG+TGG | + | chr6_3:48996015-48996034 | Msa0953150:intron | 30.0% | |
| ! | TCATTCACACAATTCTAGAA+AGG | - | chr6_3:48996086-48996105 | None:intergenic | 30.0% |
| CAGAATGGACACAATAAATA+CGG | - | chr6_3:48996156-48996175 | None:intergenic | 30.0% | |
| !!! | CCATTTTTTGTTACACAGAA+TGG | - | chr6_3:48996171-48996190 | None:intergenic | 30.0% |
| CCATTCTGTGTAACAAAAAA+TGG | + | chr6_3:48996168-48996187 | Msa0953150:intron | 30.0% | |
| GTTGAAATTACGTCAAAAGT+GGG | - | chr6_3:48996430-48996449 | None:intergenic | 30.0% | |
| TGTTGAAATTACGTCAAAAG+TGG | - | chr6_3:48996431-48996450 | None:intergenic | 30.0% | |
| AAAAAGGTAGTGACTTATGT+AGG | - | chr6_3:48996457-48996476 | None:intergenic | 30.0% | |
| !! | TGTGGGTTTTATAGTCTTAA+TGG | - | chr6_3:48996496-48996515 | None:intergenic | 30.0% |
| !! | TAGGTTTTTCGAAGGAAAAA+TGG | - | chr6_3:48996572-48996591 | None:intergenic | 30.0% |
| ! | GTTCTAGGCTGTAAAAAAAT+AGG | - | chr6_3:48996591-48996610 | None:intergenic | 30.0% |
| ! | AAACAGATTGGTGTTCTATT+TGG | - | chr6_3:48996625-48996644 | None:intergenic | 30.0% |
| GTTACTAGAGAAAAACAGAT+TGG | - | chr6_3:48996637-48996656 | None:intergenic | 30.0% | |
| GAACATAAATGTTGACAAAG+AGG | - | chr6_3:48996710-48996729 | None:intergenic | 30.0% | |
| !!! | AGGCTCTTAATTTTTTTCAG+TGG | + | chr6_3:48996834-48996853 | Msa0953150:intron | 30.0% |
| !! | TCATTTGCTGTGTAAAATAC+TGG | + | chr6_3:48996920-48996939 | Msa0953150:intron | 30.0% |
| TTATGTGTTGTATTGCAGAA+TGG | + | chr6_3:48997335-48997354 | Msa0953150:intron | 30.0% | |
| TATGTGTTGTATTGCAGAAT+GGG | + | chr6_3:48997336-48997355 | Msa0953150:intron | 30.0% | |
| ! | CTATCTTTTCCATCTTTGAT+GGG | - | chr6_3:48997498-48997517 | None:intergenic | 30.0% |
| ! | TCTATCTTTTCCATCTTTGA+TGG | - | chr6_3:48997499-48997518 | None:intergenic | 30.0% |
| ATCAAAGATGGAAAAGATAG+AGG | + | chr6_3:48997498-48997517 | Msa0953150:CDS | 30.0% | |
| AAAGGAAAATCACATCCAAA+AGG | - | chr6_3:48997621-48997640 | None:intergenic | 30.0% | |
| !!! | TTCAAGTTTTTTTGGAGCAA+AGG | - | chr6_3:48997709-48997728 | None:intergenic | 30.0% |
| !!! | TCAACCAGTTCAAGTTTTTT+TGG | - | chr6_3:48997717-48997736 | None:intergenic | 30.0% |
| TTGTATGCATGAAATGACTT+TGG | + | chr6_3:48997761-48997780 | Msa0953150:three_prime_UTR | 30.0% | |
| !! | GAAATGGAGTGTTGTTGTTA+TGG | - | chr6_3:48993014-48993033 | None:intergenic | 35.0% |
| GCAAGAATAAAGACAACAAC+AGG | + | chr6_3:48993127-48993146 | Msa0953150:CDS | 35.0% | |
| TCAACACTTCTCTTGCATTT+GGG | - | chr6_3:48993174-48993193 | None:intergenic | 35.0% | |
| ATCAACACTTCTCTTGCATT+TGG | - | chr6_3:48993175-48993194 | None:intergenic | 35.0% | |
| ! | GAACCTTTTTGATCTCGTTA+AGG | - | chr6_3:48993216-48993235 | None:intergenic | 35.0% |
| AAAAAGGTTCCAGAAGATGA+AGG | + | chr6_3:48993226-48993245 | Msa0953150:CDS | 35.0% | |
| AAAAGGTTCCAGAAGATGAA+GGG | + | chr6_3:48993227-48993246 | Msa0953150:CDS | 35.0% | |
| TAGACTTAAGGTTTGTCAAG+AGG | + | chr6_3:48993282-48993301 | Msa0953150:CDS | 35.0% | |
| TTTGTCAAGAGGAAGAAGAT+TGG | + | chr6_3:48993293-48993312 | Msa0953150:CDS | 35.0% | |
| TTGTCAAGAGGAAGAAGATT+GGG | + | chr6_3:48993294-48993313 | Msa0953150:CDS | 35.0% | |
| CAAGATGAACTCAAACTCAT+TGG | + | chr6_3:48993373-48993392 | Msa0953150:CDS | 35.0% | |
| ACAATGTTTGTGTTGAGGTT+AGG | + | chr6_3:48993499-48993518 | Msa0953150:intron | 35.0% | |
| !!! | GTGTTTTGAGGCTATGAATT+AGG | + | chr6_3:48993859-48993878 | Msa0953150:intron | 35.0% |
| !!! | CCTTTGATAGGAAGTGTTTT+CGG | + | chr6_3:48993962-48993981 | Msa0953150:intron | 35.0% |
| GTGAGTATGATCAATAGTCT+CGG | + | chr6_3:48994206-48994225 | Msa0953150:intron | 35.0% | |
| CTACTAACAAATGACTAGAC+TGG | - | chr6_3:48994335-48994354 | None:intergenic | 35.0% | |
| ! | TGTTAGTAGCTGATGTTTTG+GGG | + | chr6_3:48994346-48994365 | Msa0953150:intron | 35.0% |
| ACTACATTACAACCAAGTGA+GGG | - | chr6_3:48994380-48994399 | None:intergenic | 35.0% | |
| AACTACATTACAACCAAGTG+AGG | - | chr6_3:48994381-48994400 | None:intergenic | 35.0% | |
| ! | GTAATGTAGTTCCTTTTTCC+CGG | + | chr6_3:48994390-48994409 | Msa0953150:intron | 35.0% |
| TTTCAGTGCTTCGTAATCAA+TGG | + | chr6_3:48994586-48994605 | Msa0953150:intron | 35.0% | |
| TTTAGGTGATTTCACTTTGG+TGG | + | chr6_3:48994676-48994695 | Msa0953150:intron | 35.0% | |
| AATGGTAGGCAATTATTTGG+AGG | + | chr6_3:48994833-48994852 | Msa0953150:intron | 35.0% | |
| ATGGTAGGCAATTATTTGGA+GGG | + | chr6_3:48994834-48994853 | Msa0953150:intron | 35.0% | |
| GTAGGTCGTTTATTAGGTTT+AGG | + | chr6_3:48994965-48994984 | Msa0953150:intron | 35.0% | |
| !!! | TTTGGAGTTTTAGAGTTGGA+CGG | + | chr6_3:48995086-48995105 | Msa0953150:intron | 35.0% |
| GGTGCCTTTATTGATACAAA+TGG | - | chr6_3:48995217-48995236 | None:intergenic | 35.0% | |
| !! | TAATTCGATTCTAGGATCCA+TGG | + | chr6_3:48995289-48995308 | Msa0953150:intron | 35.0% |
| !! | AATTCGATTCTAGGATCCAT+GGG | + | chr6_3:48995290-48995309 | Msa0953150:intron | 35.0% |
| !!! | GCTACAGATAGTAGCTTTTT+TGG | - | chr6_3:48995631-48995650 | None:intergenic | 35.0% |
| ! | GTTCTTTTGTATTATCGGGT+TGG | + | chr6_3:48995868-48995887 | Msa0953150:intron | 35.0% |
| ! | AATTGTGTGAATGAGTACTG+AGG | + | chr6_3:48996092-48996111 | Msa0953150:intron | 35.0% |
| !! | ATTGTGTGAATGAGTACTGA+GGG | + | chr6_3:48996093-48996112 | Msa0953150:intron | 35.0% |
| CTTCATGACTGTTTCATAGT+TGG | + | chr6_3:48996352-48996371 | Msa0953150:intron | 35.0% | |
| GTTCTATTTGGATACAGTTG+TGG | - | chr6_3:48996613-48996632 | None:intergenic | 35.0% | |
| CATATAGGAATAGAGAGACT+TGG | - | chr6_3:48996751-48996770 | None:intergenic | 35.0% | |
| GGAGACTTGCAAAAACATAT+AGG | - | chr6_3:48996766-48996785 | None:intergenic | 35.0% | |
| CAGACAATGACAGAGAAATA+GGG | - | chr6_3:48996787-48996806 | None:intergenic | 35.0% | |
| TCAGACAATGACAGAGAAAT+AGG | - | chr6_3:48996788-48996807 | None:intergenic | 35.0% | |
| GTCATTGTCTGATATTATCG+AGG | + | chr6_3:48996796-48996815 | Msa0953150:intron | 35.0% | |
| !!! | CGAGGACCTTTTTTTAATAC+AGG | + | chr6_3:48996814-48996833 | Msa0953150:intron | 35.0% |
| CAGTGGTTCTTATTCTTGTT+TGG | + | chr6_3:48996851-48996870 | Msa0953150:intron | 35.0% | |
| CTAACTAGGAAGAGAATTGA+TGG | - | chr6_3:48997033-48997052 | None:intergenic | 35.0% | |
| ATGCATCTTACTACTAAAGC+TGG | + | chr6_3:48997204-48997223 | Msa0953150:intron | 35.0% | |
| TCTCAATTTCGTGATCATCA+GGG | - | chr6_3:48997375-48997394 | None:intergenic | 35.0% | |
| ATCTCAATTTCGTGATCATC+AGG | - | chr6_3:48997376-48997395 | None:intergenic | 35.0% | |
| TGATGATCACGAAATTGAGA+TGG | + | chr6_3:48997375-48997394 | Msa0953150:CDS | 35.0% | |
| GTGGCTAAAACAAGAAAAGA+TGG | + | chr6_3:48997526-48997545 | Msa0953150:CDS | 35.0% | |
| TCTAATGTAGCTGAAGTTCA+TGG | - | chr6_3:48997586-48997605 | None:intergenic | 35.0% | |
| !!! | AGAGCTTTGAATTCTCCTTT+TGG | + | chr6_3:48997603-48997622 | Msa0953150:three_prime_UTR | 35.0% |
| TTCAGATTCAACTGTCTTTC+AGG | + | chr6_3:48997676-48997695 | Msa0953150:three_prime_UTR | 35.0% | |
| TCAGATTCAACTGTCTTTCA+GGG | + | chr6_3:48997677-48997696 | Msa0953150:three_prime_UTR | 35.0% | |
| !!! | GTTTTTTTGGAGCAAAGGAT+TGG | - | chr6_3:48997704-48997723 | None:intergenic | 35.0% |
| TGCTCCAAAAAAACTTGAAC+TGG | + | chr6_3:48997710-48997729 | Msa0953150:three_prime_UTR | 35.0% | |
| TTGTTATGGAGGTGAACTGT+TGG | - | chr6_3:48993000-48993019 | None:intergenic | 40.0% | |
| !! | ATGGAGTGTTGTTGTTATGG+AGG | - | chr6_3:48993011-48993030 | None:intergenic | 40.0% |
| AAGACAACAACAGGAATCGT+AGG | + | chr6_3:48993136-48993155 | Msa0953150:CDS | 40.0% | |
| GACCCTTAACGAGATCAAAA+AGG | + | chr6_3:48993210-48993229 | Msa0953150:CDS | 40.0% | |
| TTACGATACCCTTCATCTTC+TGG | - | chr6_3:48993238-48993257 | None:intergenic | 40.0% | |
| GAGAAGATTGAGAATCGTCT+TGG | + | chr6_3:48993316-48993335 | Msa0953150:CDS | 40.0% | |
| ATTGAGAATCGTCTTGGTTG+TGG | + | chr6_3:48993322-48993341 | Msa0953150:CDS | 40.0% | |
| !! | TATCAAAGGTGTTGGTGCAA+TGG | - | chr6_3:48993951-48993970 | None:intergenic | 40.0% |
| ATTGCACCAACACCTTTGAT+AGG | + | chr6_3:48993950-48993969 | Msa0953150:intron | 40.0% | |
| ! | ACACTTCCTATCAAAGGTGT+TGG | - | chr6_3:48993959-48993978 | None:intergenic | 40.0% |
| CCGAAAACACTTCCTATCAA+AGG | - | chr6_3:48993965-48993984 | None:intergenic | 40.0% | |
| ! | CCAAGATTAGCTAAAGCATC+TGG | - | chr6_3:48994267-48994286 | None:intergenic | 40.0% |
| CCAGATGCTTTAGCTAATCT+TGG | + | chr6_3:48994264-48994283 | Msa0953150:intron | 40.0% | |
| AACAAATGACTAGACTGGGT+CGG | - | chr6_3:48994330-48994349 | None:intergenic | 40.0% | |
| CTACATTACAACCAAGTGAG+GGG | - | chr6_3:48994379-48994398 | None:intergenic | 40.0% | |
| !!! | TTTTTTGTTACAGAGAGGGC+CGG | - | chr6_3:48994412-48994431 | None:intergenic | 40.0% |
| ! | GTTTTTGACACTGACACATG+TGG | + | chr6_3:48994487-48994506 | Msa0953150:intron | 40.0% |
| TTTGTTGCAAATTGGGCGTT+AGG | + | chr6_3:48994911-48994930 | Msa0953150:intron | 40.0% | |
| CGTTAGGACCTAATATGAGA+GGG | + | chr6_3:48994927-48994946 | Msa0953150:intron | 40.0% | |
| ! | TTTCTGTTTAGGGCTAGAGT+AGG | + | chr6_3:48995116-48995135 | Msa0953150:intron | 40.0% |
| !! | ATTCGATTCTAGGATCCATG+GGG | + | chr6_3:48995291-48995310 | Msa0953150:intron | 40.0% |
| ! | TTTGGGATGAAGTGTGTGTT+TGG | + | chr6_3:48995351-48995370 | Msa0953150:intron | 40.0% |
| ! | GAGAAAGTGTAAGGGTAGTT+AGG | + | chr6_3:48995566-48995585 | Msa0953150:intron | 40.0% |
| TGTAAGGGTAGTTAGGTAAG+AGG | + | chr6_3:48995573-48995592 | Msa0953150:intron | 40.0% | |
| GTTGAAACTCTCTAAACGTG+CGG | - | chr6_3:48995748-48995767 | None:intergenic | 40.0% | |
| ! | AAAAATGGCGTTGAACTTGG+CGG | - | chr6_3:48996557-48996576 | None:intergenic | 40.0% |
| ! | AGGAAAAATGGCGTTGAACT+TGG | - | chr6_3:48996560-48996579 | None:intergenic | 40.0% |
| TTGGATACAGTTGTGGTTCT+AGG | - | chr6_3:48996606-48996625 | None:intergenic | 40.0% | |
| TATTGCAGAATGGGATCCTT+GGG | + | chr6_3:48997345-48997364 | Msa0953150:intron | 40.0% | |
| AGGTGTCTTGAAACTCCTTA+GGG | - | chr6_3:48997456-48997475 | None:intergenic | 40.0% | |
| ! | AAGGTGTCTTGAAACTCCTT+AGG | - | chr6_3:48997457-48997476 | None:intergenic | 40.0% |
| AGACACCTTAGATGCACTTA+TGG | + | chr6_3:48997468-48997487 | Msa0953150:CDS | 40.0% | |
| GGAAAAGATAGAGGAACTTG+TGG | + | chr6_3:48997507-48997526 | Msa0953150:CDS | 40.0% | |
| !!! | CTTTTTGGGTTCTTCATTGG+AGG | - | chr6_3:48997563-48997582 | None:intergenic | 40.0% |
| !!! | TGGCTTTTTGGGTTCTTCAT+TGG | - | chr6_3:48997566-48997585 | None:intergenic | 40.0% |
| ! | GCTGAAGTTCATGGCTTTTT+GGG | - | chr6_3:48997577-48997596 | None:intergenic | 40.0% |
| ! | AGCTGAAGTTCATGGCTTTT+TGG | - | chr6_3:48997578-48997597 | None:intergenic | 40.0% |
| ! | CACGTGTGTTGTGTTGATGT+CGG | - | chr6_3:48994004-48994023 | None:intergenic | 45.0% |
| ! | TTTTTGTTACAGAGAGGGCC+GGG | - | chr6_3:48994411-48994430 | None:intergenic | 45.0% |
| ! | TATTAGCACTGTTGACGGGT+TGG | + | chr6_3:48994539-48994558 | Msa0953150:intron | 45.0% |
| GCGTTAGGACCTAATATGAG+AGG | + | chr6_3:48994926-48994945 | Msa0953150:intron | 45.0% | |
| AGGATTCCTCTGAGTTGTGT+CGG | + | chr6_3:48995136-48995155 | Msa0953150:intron | 45.0% | |
| TTGTGTCGGAGCTTTGCTTT+GGG | + | chr6_3:48995150-48995169 | Msa0953150:intron | 45.0% | |
| ATCCATGGGGTCCTATCATT+GGG | + | chr6_3:48995304-48995323 | Msa0953150:intron | 45.0% | |
| ! | TTTTCAGCACCCCCAATGAT+AGG | - | chr6_3:48995318-48995337 | None:intergenic | 45.0% |
| !! | ATTGGGGGTGCTGAAAAAGT+AGG | + | chr6_3:48995321-48995340 | Msa0953150:intron | 45.0% |
| !! | TTGGGGGTGCTGAAAAAGTA+GGG | + | chr6_3:48995322-48995341 | Msa0953150:intron | 45.0% |
| !! | GAAGTGTGTGTTTGGTTCTG+CGG | + | chr6_3:48995359-48995378 | Msa0953150:intron | 45.0% |
| AGTTAGGTAAGAGGACAGCA+AGG | + | chr6_3:48995582-48995601 | Msa0953150:intron | 45.0% | |
| !! | GAATGAGTACTGAGGGAAAC+AGG | + | chr6_3:48996100-48996119 | Msa0953150:intron | 45.0% |
| TCTAAGTGTCCGACATGTGT+TGG | + | chr6_3:48996276-48996295 | Msa0953150:intron | 45.0% | |
| TGTCAGACACCAACACATGT+CGG | - | chr6_3:48996288-48996307 | None:intergenic | 45.0% | |
| TGGTGTCTGACATCAACATG+TGG | + | chr6_3:48996296-48996315 | Msa0953150:intron | 45.0% | |
| AAAGTGGGCACAACTTGTGT+CGG | - | chr6_3:48996415-48996434 | None:intergenic | 45.0% | |
| TAGAGAGACTTGGAACAGAG+AGG | - | chr6_3:48996741-48996760 | None:intergenic | 45.0% | |
| !! | TCACATCGGTGTCACTAACT+AGG | - | chr6_3:48997047-48997066 | None:intergenic | 45.0% |
| GTATTGCAGAATGGGATCCT+TGG | + | chr6_3:48997344-48997363 | Msa0953150:intron | 45.0% | |
| ATTGCAGAATGGGATCCTTG+GGG | + | chr6_3:48997346-48997365 | Msa0953150:intron | 45.0% | |
| GTCAGCCATAAGTGCATCTA+AGG | - | chr6_3:48997476-48997495 | None:intergenic | 45.0% | |
| TATGGCTGACCCATCAAAGA+TGG | + | chr6_3:48997486-48997505 | Msa0953150:CDS | 45.0% | |
| !! | ACAAGAAAAGATGGTGCTGC+TGG | + | chr6_3:48997535-48997554 | Msa0953150:CDS | 45.0% |
| CTCTCTCTCTCTCTCGGAAA+TGG | - | chr6_3:48993030-48993049 | None:intergenic | 50.0% | |
| CTCTCTCTCTCTCTCTCTCT+CGG | - | chr6_3:48993036-48993055 | None:intergenic | 50.0% | |
| CAAGATGTTTCTCCGAGCGA+TGG | + | chr6_3:48993090-48993109 | Msa0953150:exon | 50.0% | |
| GAATCGTCTTGGTTGTGGTC+AGG | + | chr6_3:48993327-48993346 | Msa0953150:CDS | 50.0% | |
| !! | AGGTGTTGGTGCAATGGAGA+CGG | - | chr6_3:48993945-48993964 | None:intergenic | 50.0% |
| ! | TGTTGTGTTGATGTCGGACG+CGG | - | chr6_3:48993998-48994017 | None:intergenic | 50.0% |
| ACCACAAACACCTGTGCAGA+AGG | + | chr6_3:48994446-48994465 | Msa0953150:intron | 50.0% | |
| ACCTTCTGCACAGGTGTTTG+TGG | - | chr6_3:48994450-48994469 | None:intergenic | 50.0% | |
| !! | TGACGGGTTGGTGTTATGTC+TGG | + | chr6_3:48994551-48994570 | Msa0953150:intron | 50.0% |
| ! | TGTGTGCGCGCTTTTCAATG+TGG | + | chr6_3:48994788-48994807 | Msa0953150:intron | 50.0% |
| ! | GTGTGCGCGCTTTTCAATGT+GGG | + | chr6_3:48994789-48994808 | Msa0953150:intron | 50.0% |
| AAAGCTCCGACACAACTCAG+AGG | - | chr6_3:48995145-48995164 | None:intergenic | 50.0% | |
| GTTGTGTCGGAGCTTTGCTT+TGG | + | chr6_3:48995149-48995168 | Msa0953150:intron | 50.0% | |
| GATCCATGGGGTCCTATCAT+TGG | + | chr6_3:48995303-48995322 | Msa0953150:intron | 50.0% | |
| TCCATGGGGTCCTATCATTG+GGG | + | chr6_3:48995305-48995324 | Msa0953150:intron | 50.0% | |
| AAGTGGGCACAACTTGTGTC+GGG | - | chr6_3:48996414-48996433 | None:intergenic | 50.0% | |
| CGTTGAACTTGGCGGTTGAT+TGG | - | chr6_3:48996549-48996568 | None:intergenic | 50.0% | |
| TGATCATCAGGGATACCCCA+AGG | - | chr6_3:48997364-48997383 | None:intergenic | 50.0% | |
| TGAGGAACGTGCTTCGGAAT+TGG | - | chr6_3:48997415-48997434 | None:intergenic | 50.0% | |
| TGAAACTCCTTAGGGAGACG+AGG | - | chr6_3:48997448-48997467 | None:intergenic | 50.0% | |
| TTAAGGGTCGTGCCATCGCT+CGG | - | chr6_3:48993105-48993124 | None:intergenic | 55.0% | |
| AGCGATGGCACGACCCTTAA+TGG | + | chr6_3:48993105-48993124 | Msa0953150:CDS | 55.0% | |
| TACAGAGAGGGCCGGGAAAA+AGG | - | chr6_3:48994404-48994423 | None:intergenic | 55.0% | |
| GTGAGACACACCTTCTGCAC+AGG | - | chr6_3:48994459-48994478 | None:intergenic | 55.0% | |
| CCATGGGGTCCTATCATTGG+GGG | + | chr6_3:48995306-48995325 | Msa0953150:intron | 55.0% | |
| AACTTGTGTCGGGGACTCGA+GGG | - | chr6_3:48996404-48996423 | None:intergenic | 55.0% | |
| AGTGGGCACAACTTGTGTCG+GGG | - | chr6_3:48996413-48996432 | None:intergenic | 55.0% | |
| ! | CGGTGTTGAGGAACGTGCTT+CGG | - | chr6_3:48997421-48997440 | None:intergenic | 55.0% |
| AACTCCTTAGGGAGACGAGG+AGG | - | chr6_3:48997445-48997464 | None:intergenic | 55.0% | |
| GGGGATAGCTACCCCTCACT+TGG | + | chr6_3:48994365-48994384 | Msa0953150:intron | 60.0% | |
| CCCCCAATGATAGGACCCCA+TGG | - | chr6_3:48995309-48995328 | None:intergenic | 60.0% | |
| !! | GGGGACTCGAGGGTATCTAG+GGG | - | chr6_3:48996394-48996413 | None:intergenic | 60.0% |
| !! | CGGGGACTCGAGGGTATCTA+GGG | - | chr6_3:48996395-48996414 | None:intergenic | 60.0% |
| !! | TCGGGGACTCGAGGGTATCT+AGG | - | chr6_3:48996396-48996415 | None:intergenic | 60.0% |
| CAACTTGTGTCGGGGACTCG+AGG | - | chr6_3:48996405-48996424 | None:intergenic | 60.0% | |
| ! | AGACGAGGAGGACGGTGTTG+AGG | - | chr6_3:48997433-48997452 | None:intergenic | 60.0% |
| CCTTAGGGAGACGAGGAGGA+CGG | - | chr6_3:48997441-48997460 | None:intergenic | 60.0% | |
| CCGTCCTCCTCGTCTCCCTA+AGG | + | chr6_3:48997438-48997457 | Msa0953150:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 48992995 | 48997824 | 48992995 | ID=Msa0953150;Name=Msa0953150 |
| chr6_3 | mRNA | 48992995 | 48997824 | 48992995 | ID=Msa0953150-mRNA-1;Parent=Msa0953150;Name=Msa0953150-mRNA-1;_AED=0.06;_eAED=0.06;_QI=99|1|1|1|1|1|2|236|182 |
| chr6_3 | exon | 48992995 | 48993406 | 48992995 | ID=Msa0953150-mRNA-1:exon:10692;Parent=Msa0953150-mRNA-1 |
| chr6_3 | exon | 48997353 | 48997824 | 48997353 | ID=Msa0953150-mRNA-1:exon:10693;Parent=Msa0953150-mRNA-1 |
| chr6_3 | five_prime_UTR | 48992995 | 48993093 | 48992995 | ID=Msa0953150-mRNA-1:five_prime_utr;Parent=Msa0953150-mRNA-1 |
| chr6_3 | CDS | 48993094 | 48993406 | 48993094 | ID=Msa0953150-mRNA-1:cds;Parent=Msa0953150-mRNA-1 |
| chr6_3 | CDS | 48997353 | 48997588 | 48997353 | ID=Msa0953150-mRNA-1:cds;Parent=Msa0953150-mRNA-1 |
| chr6_3 | three_prime_UTR | 48997589 | 48997824 | 48997589 | ID=Msa0953150-mRNA-1:three_prime_utr;Parent=Msa0953150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
