Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1311800 | XP_013444156.1 | 98.980 | 98 | 1 | 0 | 1 | 98 | 1 | 98 | 1.63e-64 | 200 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1311800 | sp|Q9FIJ2|NDUA2_ARATH | 69.474 | 95 | 29 | 0 | 1 | 95 | 1 | 95 | 6.90e-49 | 153 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1311800 | A0A072TMV0 | 98.980 | 98 | 1 | 0 | 1 | 98 | 1 | 98 | 7.78e-65 | 200 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1230600 | Msa1311800 | 0.800308 | 1.531555e-48 | -8.615850e-47 |
| Msa1230940 | Msa1311800 | 0.912308 | 2.261325e-83 | -8.615850e-47 |
| Msa1231010 | Msa1311800 | 0.890579 | 8.675797e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1311800 | MtrunA17_Chr8g0339811 | 98.980 | 98 | 1 | 0 | 1 | 98 | 1 | 98 | 1.50e-68 | 200 |
| Msa1311800 | MtrunA17_Chr2g0294481 | 92.632 | 95 | 7 | 0 | 1 | 95 | 1 | 95 | 9.02e-54 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1311800 | AT5G47890.1 | 69.474 | 95 | 29 | 0 | 1 | 95 | 1 | 95 | 7.01e-50 | 153 |
Find 37 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGATCAATATTGGCAATTT+TGG | -0.001659 | 8_4:+8709632 | None:intergenic |
| ACGGATTAAATCTATTTATT+TGG | 0.121925 | 8_4:-8708673 | Msa1311800:three_prime_UTR |
| TACCATATCTTGCCCATAAT+TGG | 0.178345 | 8_4:+8709588 | None:intergenic |
| GTGGAGTTGAACCCCAATTA+TGG | 0.257922 | 8_4:-8709601 | Msa1311800:CDS |
| ATTTGTTGAAAAGAATTATA+CGG | 0.319148 | 8_4:-8709672 | Msa1311800:CDS |
| ACCATATCTTGCCCATAATT+GGG | 0.333987 | 8_4:+8709589 | None:intergenic |
| CTGCATTCACGGATCAATAT+TGG | 0.349255 | 8_4:+8709623 | None:intergenic |
| AACCTTGCAGATGAGCTTGC+AGG | 0.367566 | 8_4:+8709795 | None:intergenic |
| CCCCAATTATGGGCAAGATA+TGG | 0.376635 | 8_4:-8709590 | Msa1311800:intron |
| TGAACTCTTCTTCTGATCTT+CGG | 0.383237 | 8_4:-8711903 | Msa1311800:five_prime_UTR |
| AGCTTCAACTTAAACTCAAC+AGG | 0.397065 | 8_4:+8708745 | None:intergenic |
| CAAAGAACATAAAAGAGCTT+CGG | 0.421200 | 8_4:-8709839 | Msa1311800:CDS |
| TGGAGTTGAACCCCAATTAT+GGG | 0.437531 | 8_4:-8709600 | Msa1311800:CDS |
| GATTTCTTACTCACTGTTTG+TGG | 0.442906 | 8_4:+8711877 | None:intergenic |
| GTTCAACTCCACTGCATTCA+CGG | 0.460928 | 8_4:+8709612 | None:intergenic |
| CCAGATTTGGGCGTTGAGAA+AGG | 0.467692 | 8_4:-8708946 | Msa1311800:intron |
| CTCGAAGATATGGTAAAAGC+AGG | 0.488900 | 8_4:-8708880 | Msa1311800:CDS |
| ATAGATAGATTGATACCCTC+TGG | 0.493703 | 8_4:+8711956 | None:intergenic |
| TGTTATTACAGTGCGACTCT+TGG | 0.501310 | 8_4:-8708784 | Msa1311800:three_prime_UTR |
| CGTTGAGAAAGGCATCAAAC+TGG | 0.502706 | 8_4:-8708935 | Msa1311800:CDS |
| ATGAGCTTGCAGGAGATGAC+TGG | 0.511150 | 8_4:+8709805 | None:intergenic |
| TAGATAGATTGATACCCTCT+GGG | 0.550031 | 8_4:+8711957 | None:intergenic |
| CCATATCTTGCCCATAATTG+GGG | 0.562541 | 8_4:+8709590 | None:intergenic |
| TCGAAGATATGGTAAAAGCA+GGG | 0.571911 | 8_4:-8708879 | Msa1311800:CDS |
| CTCCTGCAAGCTCATCTGCA+AGG | 0.602497 | 8_4:-8709797 | Msa1311800:intron |
| GATCTAGGAAAGCAATGGCA+TGG | 0.605625 | 8_4:-8709875 | Msa1311800:intron |
| TGAGATATTGATTCAAAACA+CGG | 0.613809 | 8_4:-8708692 | Msa1311800:three_prime_UTR |
| GAGAAAGGCATCAAACTGGA+AGG | 0.620188 | 8_4:-8708931 | Msa1311800:CDS |
| ACTTCGATCTAGGAAAGCAA+TGG | 0.625947 | 8_4:-8709880 | Msa1311800:intron |
| CGAAGATATGGTAAAAGCAG+GGG | 0.650048 | 8_4:-8708878 | Msa1311800:CDS |
| TAATCAAATCAATCCCCAGA+GGG | 0.654912 | 8_4:-8711971 | Msa1311800:five_prime_UTR |
| AGGAAAGCAATGGCATGGAG+AGG | 0.655080 | 8_4:-8709870 | Msa1311800:exon |
| TCAATATCTCACAATAAACA+TGG | 0.658161 | 8_4:+8708704 | None:intergenic |
| TATGTATCGACTAAGCAACC+TGG | 0.659217 | 8_4:-8708600 | Msa1311800:three_prime_UTR |
| ATATTGATCCGTGAATGCAG+TGG | 0.692040 | 8_4:-8709620 | Msa1311800:CDS |
| AGATAGATTGATACCCTCTG+GGG | 0.722111 | 8_4:+8711958 | None:intergenic |
| GTAATCAAATCAATCCCCAG+AGG | 0.733302 | 8_4:-8711972 | Msa1311800:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATGAAAATTAAGATA+GGG | + | chr8_4:8710965-8710984 | None:intergenic | 10.0% |
| !! | AAAATAATGAAAATTAAGAT+AGG | + | chr8_4:8710966-8710985 | None:intergenic | 10.0% |
| !!! | ATAATCTATTTCTATAACAA+AGG | + | chr8_4:8708896-8708915 | None:intergenic | 15.0% |
| !!! | ATTATAATGCTTTGAAATTT+TGG | + | chr8_4:8710781-8710800 | None:intergenic | 15.0% |
| !!! | ATTATTATTTTTGTTATCTC+AGG | - | chr8_4:8710828-8710847 | Msa1311800:intron | 15.0% |
| !!! | TTATTATTTTTGTTATCTCA+GGG | - | chr8_4:8710829-8710848 | Msa1311800:intron | 15.0% |
| !!! | ATTTGTTGAAAAGAATTATA+CGG | - | chr8_4:8710853-8710872 | Msa1311800:intron | 15.0% |
| !! | AATAATGAAAATTAAGATAG+GGG | + | chr8_4:8710964-8710983 | None:intergenic | 15.0% |
| !! | TATTATAATATACACAACTT+AGG | + | chr8_4:8711331-8711350 | None:intergenic | 15.0% |
| !! | TGTATATTATAATATCCATT+CGG | - | chr8_4:8711337-8711356 | Msa1311800:intron | 15.0% |
| !! | GAAATAGAAAAACTTGTAAT+TGG | + | chr8_4:8708696-8708715 | None:intergenic | 20.0% |
| !!! | TTATTTGAGACTGTTTTTAT+AGG | - | chr8_4:8708790-8708809 | Msa1311800:three_prime_UTR | 20.0% |
| !!! | TTGCTCTTTTTATTACATTT+AGG | - | chr8_4:8709167-8709186 | Msa1311800:intron | 20.0% |
| !! | AAAATAATAGCCAAACTTAT+AGG | + | chr8_4:8709451-8709470 | None:intergenic | 20.0% |
| !!! | CTATTCAAAATTGATTTGAA+TGG | + | chr8_4:8710096-8710115 | None:intergenic | 20.0% |
| !!! | CATTCAAATCAATTTTGAAT+AGG | - | chr8_4:8710094-8710113 | Msa1311800:intron | 20.0% |
| !! | TAATGAAGAAAACAGTAAAA+GGG | + | chr8_4:8710402-8710421 | None:intergenic | 20.0% |
| !! | ATAATGAAGAAAACAGTAAA+AGG | + | chr8_4:8710403-8710422 | None:intergenic | 20.0% |
| !! | AAATATTATAACTTCGATCT+AGG | - | chr8_4:8710635-8710654 | Msa1311800:intron | 20.0% |
| !!! | GATATATTTTTTCCTTTCTT+TGG | - | chr8_4:8710754-8710773 | Msa1311800:intron | 20.0% |
| !! | ATGTAGTTATGAGAATATAA+TGG | - | chr8_4:8711132-8711151 | Msa1311800:intron | 20.0% |
| !!! | TTTCAATATTATCCCAATTT+TGG | - | chr8_4:8711179-8711198 | Msa1311800:intron | 20.0% |
| !!! | TTTTTTTCTTAATCCAAGTT+CGG | + | chr8_4:8711307-8711326 | None:intergenic | 20.0% |
| !!! | ACGGATTAAATCTATTTATT+TGG | - | chr8_4:8711852-8711871 | Msa1311800:intron | 20.0% |
| ! | AAAATCAAAACACGTGAAAA+TGG | + | chr8_4:8708673-8708692 | None:intergenic | 25.0% |
| !!! | CTTATTTTCATAAGTTCTTC+AGG | - | chr8_4:8708815-8708834 | Msa1311800:three_prime_UTR | 25.0% |
| ! | TTATACTCAATGTCATTCAT+GGG | + | chr8_4:8708961-8708980 | None:intergenic | 25.0% |
| ! | ATTATACTCAATGTCATTCA+TGG | + | chr8_4:8708962-8708981 | None:intergenic | 25.0% |
| ! | TGAATGACATTGAGTATAAT+TGG | - | chr8_4:8708962-8708981 | Msa1311800:intron | 25.0% |
| ! | GAATGACATTGAGTATAATT+GGG | - | chr8_4:8708963-8708982 | Msa1311800:intron | 25.0% |
| ! | ATAAGTGTTAGTAAGTTTCT+TGG | - | chr8_4:8709065-8709084 | Msa1311800:intron | 25.0% |
| ! | TTCTTGGTATAATAGAGTAT+TGG | - | chr8_4:8709081-8709100 | Msa1311800:intron | 25.0% |
| !! | TCTTGGTATAATAGAGTATT+GGG | - | chr8_4:8709082-8709101 | Msa1311800:intron | 25.0% |
| ! | TCAAGTCTATTGTTAGTTAT+AGG | - | chr8_4:8709251-8709270 | Msa1311800:intron | 25.0% |
| ! | CAAGTCTATTGTTAGTTATA+GGG | - | chr8_4:8709252-8709271 | Msa1311800:intron | 25.0% |
| ! | ACTTATAGGCAAAAAATTGT+GGG | + | chr8_4:8709437-8709456 | None:intergenic | 25.0% |
| ! | AACTTATAGGCAAAAAATTG+TGG | + | chr8_4:8709438-8709457 | None:intergenic | 25.0% |
| !!! | CAATTTTTTGCCTATAAGTT+TGG | - | chr8_4:8709438-8709457 | Msa1311800:intron | 25.0% |
| ! | TTAGTCATGGAAAAAAATCT+GGG | + | chr8_4:8709646-8709665 | None:intergenic | 25.0% |
| ! | TTTAGTCATGGAAAAAAATC+TGG | + | chr8_4:8709647-8709666 | None:intergenic | 25.0% |
| !!! | TTTTTTCCATGACTAAAAAG+TGG | - | chr8_4:8709650-8709669 | Msa1311800:CDS | 25.0% |
| ! | TTAACTGAGAAATAGAAAAC+TGG | + | chr8_4:8709875-8709894 | None:intergenic | 25.0% |
| !! | TAAGATTTTATCAATGCTAG+TGG | + | chr8_4:8709979-8709998 | None:intergenic | 25.0% |
| ! | GTGTAAAATTATTAAGCTCA+TGG | - | chr8_4:8710047-8710066 | Msa1311800:intron | 25.0% |
| !! | AATCAATTTTGAATAGGACA+AGG | - | chr8_4:8710100-8710119 | Msa1311800:intron | 25.0% |
| ! | AATTTCCTGTTATGAAACTA+GGG | + | chr8_4:8711032-8711051 | None:intergenic | 25.0% |
| ! | AAATTTCCTGTTATGAAACT+AGG | + | chr8_4:8711033-8711052 | None:intergenic | 25.0% |
| !! | GTTTCATAACAGGAAATTTT+AGG | - | chr8_4:8711034-8711053 | Msa1311800:intron | 25.0% |
| ! | TACTGAAATTGGCATTATAA+GGG | + | chr8_4:8711429-8711448 | None:intergenic | 25.0% |
| ! | ATACTGAAATTGGCATTATA+AGG | + | chr8_4:8711430-8711449 | None:intergenic | 25.0% |
| !!! | TCATTCTCATTATTTTGTAC+TGG | - | chr8_4:8711516-8711535 | Msa1311800:intron | 25.0% |
| !! | CTTTTATTCACTGTATGAAA+GGG | - | chr8_4:8711695-8711714 | Msa1311800:intron | 25.0% |
| !! | GAAAGGGAATAAATGTTTTT+AGG | - | chr8_4:8711711-8711730 | Msa1311800:intron | 25.0% |
| ! | TCAATATCTCACAATAAACA+TGG | + | chr8_4:8711824-8711843 | None:intergenic | 25.0% |
| !!! | TGAGATATTGATTCAAAACA+CGG | - | chr8_4:8711833-8711852 | Msa1311800:intron | 25.0% |
| ! | CTTAAAAAGAATATTCTACC+AGG | + | chr8_4:8711946-8711965 | None:intergenic | 25.0% |
| GTTTATATTGTGGTAAAGTG+TGG | - | chr8_4:8709313-8709332 | Msa1311800:intron | 30.0% | |
| CTTATAGGCAAAAAATTGTG+GGG | + | chr8_4:8709436-8709455 | None:intergenic | 30.0% | |
| ! | GCTATTATTTTCATTCTGAC+AGG | - | chr8_4:8709460-8709479 | Msa1311800:intron | 30.0% |
| TTAATTGGAAATCGGAAACT+TGG | - | chr8_4:8709496-8709515 | Msa1311800:intron | 30.0% | |
| TAATTGGAAATCGGAAACTT+GGG | - | chr8_4:8709497-8709516 | Msa1311800:intron | 30.0% | |
| TGGCTATATACAATCTCAAA+GGG | + | chr8_4:8709618-8709637 | None:intergenic | 30.0% | |
| TAGTCATGGAAAAAAATCTG+GGG | + | chr8_4:8709645-8709664 | None:intergenic | 30.0% | |
| !!! | AAACTTCCACTTTTTAGTCA+TGG | + | chr8_4:8709659-8709678 | None:intergenic | 30.0% |
| CATCTCATGATAAATTCTCT+TGG | + | chr8_4:8709762-8709781 | None:intergenic | 30.0% | |
| CAAGAGAATTTATCATGAGA+TGG | - | chr8_4:8709760-8709779 | Msa1311800:intron | 30.0% | |
| TCTTGTAAACAACTACATGA+GGG | + | chr8_4:8709802-8709821 | None:intergenic | 30.0% | |
| ATCTTGTAAACAACTACATG+AGG | + | chr8_4:8709803-8709822 | None:intergenic | 30.0% | |
| AGTTGTTTACAAGATTGACA+AGG | - | chr8_4:8709808-8709827 | Msa1311800:CDS | 30.0% | |
| CAGTTAAGAAAAAGTAGTAG+AGG | - | chr8_4:8709888-8709907 | Msa1311800:intron | 30.0% | |
| TATAACAATTACCAAGATGC+AGG | + | chr8_4:8709937-8709956 | None:intergenic | 30.0% | |
| ! | TTGATTTGAATGGTAGAAGT+TGG | + | chr8_4:8710086-8710105 | None:intergenic | 30.0% |
| TATCTGTCCATTAGATATGT+AGG | - | chr8_4:8710285-8710304 | Msa1311800:intron | 30.0% | |
| ACTCTTACCTACATATCTAA+TGG | + | chr8_4:8710295-8710314 | None:intergenic | 30.0% | |
| !! | GATATGTAGGTAAGAGTATT+AGG | - | chr8_4:8710298-8710317 | Msa1311800:intron | 30.0% |
| ATAATATGATTGTCTGTGAG+AGG | - | chr8_4:8710460-8710479 | Msa1311800:intron | 30.0% | |
| !! | GTATCTAGTATTGATTTGAC+TGG | + | chr8_4:8710535-8710554 | None:intergenic | 30.0% |
| AAATCAATACTAGATACCAG+TGG | - | chr8_4:8710538-8710557 | Msa1311800:intron | 30.0% | |
| CAAAGAACATAAAAGAGCTT+CGG | - | chr8_4:8710686-8710705 | Msa1311800:intron | 30.0% | |
| !! | TGAAATTTTGGTCCAAAGAA+AGG | + | chr8_4:8710769-8710788 | None:intergenic | 30.0% |
| ! | GGATCAATATTGGCAATTTT+GGG | + | chr8_4:8710895-8710914 | None:intergenic | 30.0% |
| GAACATGTGAATGCAAATTA+TGG | + | chr8_4:8711007-8711026 | None:intergenic | 30.0% | |
| ATTTCCTGTTATGAAACTAG+GGG | + | chr8_4:8711031-8711050 | None:intergenic | 30.0% | |
| ! | TCATAACTACATCTCTAGAA+TGG | + | chr8_4:8711124-8711143 | None:intergenic | 30.0% |
| ! | TGTGGATTAAAGCCAAAATT+GGG | + | chr8_4:8711194-8711213 | None:intergenic | 30.0% |
| ! | TTGTGGATTAAAGCCAAAAT+TGG | + | chr8_4:8711195-8711214 | None:intergenic | 30.0% |
| GATTCGAGATATTGTTTGAA+GGG | + | chr8_4:8711255-8711274 | None:intergenic | 30.0% | |
| AGATTCGAGATATTGTTTGA+AGG | + | chr8_4:8711256-8711275 | None:intergenic | 30.0% | |
| TTCAAACAATATCTCGAATC+TGG | - | chr8_4:8711255-8711274 | Msa1311800:intron | 30.0% | |
| ! | GATTGTTACTTCCGATTAAT+TGG | - | chr8_4:8711364-8711383 | Msa1311800:intron | 30.0% |
| TTGACTACAAGCCAATTAAT+CGG | + | chr8_4:8711378-8711397 | None:intergenic | 30.0% | |
| !! | ATTAATTGGCTTGTAGTCAA+TGG | - | chr8_4:8711378-8711397 | Msa1311800:intron | 30.0% |
| ! | TAGTTTTCTAATCGCATTGT+AGG | + | chr8_4:8711404-8711423 | None:intergenic | 30.0% |
| CAGAGTAAGTATACTGAAAT+TGG | + | chr8_4:8711440-8711459 | None:intergenic | 30.0% | |
| GCTACAAGATATAATCAGAA+AGG | + | chr8_4:8711487-8711506 | None:intergenic | 30.0% | |
| TCCTTCTTTAATACCAGATT+TGG | - | chr8_4:8711566-8711585 | Msa1311800:intron | 30.0% | |
| CCTTCTTTAATACCAGATTT+GGG | - | chr8_4:8711567-8711586 | Msa1311800:intron | 30.0% | |
| ! | GACAGAACCACAAATTTTTA+AGG | - | chr8_4:8711620-8711639 | Msa1311800:intron | 30.0% |
| TCGAGTACCTTAAAAATTTG+TGG | + | chr8_4:8711630-8711649 | None:intergenic | 30.0% | |
| !!! | TTTTAAGGTACTCGAAGATA+TGG | - | chr8_4:8711635-8711654 | Msa1311800:intron | 30.0% |
| ! | GCTTTTATTCACTGTATGAA+AGG | - | chr8_4:8711694-8711713 | Msa1311800:intron | 30.0% |
| TAATCAAATCAATCCCCAGA+GGG | - | chr8_4:8708554-8708573 | Msa1311800:three_prime_UTR | 35.0% | |
| TAGATAGATTGATACCCTCT+GGG | + | chr8_4:8708571-8708590 | None:intergenic | 35.0% | |
| ATAGATAGATTGATACCCTC+TGG | + | chr8_4:8708572-8708591 | None:intergenic | 35.0% | |
| TGAACTCTTCTTCTGATCTT+CGG | - | chr8_4:8708622-8708641 | Msa1311800:three_prime_UTR | 35.0% | |
| GATTTCTTACTCACTGTTTG+TGG | + | chr8_4:8708651-8708670 | None:intergenic | 35.0% | |
| TCATAAGCGCTTATCATGAT+AGG | + | chr8_4:8708928-8708947 | None:intergenic | 35.0% | |
| ACTACTAAGCACATAGTTGA+TGG | - | chr8_4:8709199-8709218 | Msa1311800:intron | 35.0% | |
| ! | TTGATGGCTTGGATATCAAA+TGG | - | chr8_4:8709215-8709234 | Msa1311800:intron | 35.0% |
| ATTGTTAGTTATAGGGAGCA+TGG | - | chr8_4:8709259-8709278 | Msa1311800:intron | 35.0% | |
| TATATTTCGTCCGAAATTGC+TGG | - | chr8_4:8709378-8709397 | Msa1311800:intron | 35.0% | |
| TTTCATTCTGACAGGTATAG+TGG | - | chr8_4:8709468-8709487 | Msa1311800:intron | 35.0% | |
| TTCATTCTGACAGGTATAGT+GGG | - | chr8_4:8709469-8709488 | Msa1311800:intron | 35.0% | |
| AATTGGAAATCGGAAACTTG+GGG | - | chr8_4:8709498-8709517 | Msa1311800:intron | 35.0% | |
| AACCAACTACATGGTCAAAT+TGG | - | chr8_4:8709535-8709554 | Msa1311800:intron | 35.0% | |
| CTGGCTATATACAATCTCAA+AGG | + | chr8_4:8709619-8709638 | None:intergenic | 35.0% | |
| CTGAGAAATAGAAAACTGGA+TGG | + | chr8_4:8709871-8709890 | None:intergenic | 35.0% | |
| ! | AGTAGTAGAGGTACATAAAG+TGG | - | chr8_4:8709900-8709919 | Msa1311800:intron | 35.0% |
| TAGTGGTTCAATGATATTGG+GGG | + | chr8_4:8709962-8709981 | None:intergenic | 35.0% | |
| CTAGTGGTTCAATGATATTG+GGG | + | chr8_4:8709963-8709982 | None:intergenic | 35.0% | |
| GCTAGTGGTTCAATGATATT+GGG | + | chr8_4:8709964-8709983 | None:intergenic | 35.0% | |
| TGCTAGTGGTTCAATGATAT+TGG | + | chr8_4:8709965-8709984 | None:intergenic | 35.0% | |
| TATCAAGCAGAAGCAAAAAC+TGG | - | chr8_4:8710002-8710021 | Msa1311800:intron | 35.0% | |
| TGCATATACCTCCCAAAATT+AGG | + | chr8_4:8710206-8710225 | None:intergenic | 35.0% | |
| !! | TGTAGGTAAGAGTATTAGGA+TGG | - | chr8_4:8710302-8710321 | Msa1311800:intron | 35.0% |
| !! | GTAGGTAAGAGTATTAGGAT+GGG | - | chr8_4:8710303-8710322 | Msa1311800:intron | 35.0% |
| !! | CTGTTAACTTGTTACAACAG+AGG | - | chr8_4:8710329-8710348 | Msa1311800:intron | 35.0% |
| ! | CGGATCAATATTGGCAATTT+TGG | + | chr8_4:8710896-8710915 | None:intergenic | 35.0% |
| ACCATATCTTGCCCATAATT+GGG | + | chr8_4:8710939-8710958 | None:intergenic | 35.0% | |
| TACCATATCTTGCCCATAAT+TGG | + | chr8_4:8710940-8710959 | None:intergenic | 35.0% | |
| TTTCCTGTTATGAAACTAGG+GGG | + | chr8_4:8711030-8711049 | None:intergenic | 35.0% | |
| CTCAGAACAACAAATGTTTG+TGG | + | chr8_4:8711212-8711231 | None:intergenic | 35.0% | |
| AAGTAACAATCACAACCGAA+TGG | + | chr8_4:8711355-8711374 | None:intergenic | 35.0% | |
| CCCAAATCTGGTATTAAAGA+AGG | + | chr8_4:8711570-8711589 | None:intergenic | 35.0% | |
| TCGAAGATATGGTAAAAGCA+GGG | - | chr8_4:8711646-8711665 | Msa1311800:intron | 35.0% | |
| AGCTTCAACTTAAACTCAAC+AGG | + | chr8_4:8711783-8711802 | None:intergenic | 35.0% | |
| GTAATCAAATCAATCCCCAG+AGG | - | chr8_4:8708553-8708572 | Msa1311800:three_prime_UTR | 40.0% | |
| AGATAGATTGATACCCTCTG+GGG | + | chr8_4:8708570-8708589 | None:intergenic | 40.0% | |
| !! | TAAGCACATAGTTGATGGCT+TGG | - | chr8_4:8709204-8709223 | Msa1311800:intron | 40.0% |
| !!! | GGGAGCATGGTTCTAAATTT+TGG | - | chr8_4:8709272-8709291 | Msa1311800:intron | 40.0% |
| ATATTGTGGTAAAGTGTGGC+TGG | - | chr8_4:8709317-8709336 | Msa1311800:intron | 40.0% | |
| TAGGCAAAAAATTGTGGGGA+GGG | + | chr8_4:8709432-8709451 | None:intergenic | 40.0% | |
| ATAGGCAAAAAATTGTGGGG+AGG | + | chr8_4:8709433-8709452 | None:intergenic | 40.0% | |
| TCATTCTGACAGGTATAGTG+GGG | - | chr8_4:8709470-8709489 | Msa1311800:intron | 40.0% | |
| ! | TGGGGTGCTTAATTGGAAAT+CGG | - | chr8_4:8709488-8709507 | Msa1311800:intron | 40.0% |
| AGCCAATTTGACCATGTAGT+TGG | + | chr8_4:8709540-8709559 | None:intergenic | 40.0% | |
| TTTAGATGCAGCAACATGGT+AGG | + | chr8_4:8709592-8709611 | None:intergenic | 40.0% | |
| GAGATTTAGATGCAGCAACA+TGG | + | chr8_4:8709596-8709615 | None:intergenic | 40.0% | |
| ! | GGAAAAAAATCTGGGGTTTC+TGG | + | chr8_4:8709638-8709657 | None:intergenic | 40.0% |
| AACTATTGCGACTGAACTGA+AGG | - | chr8_4:8709686-8709705 | Msa1311800:intron | 40.0% | |
| ! | GCTATTGACTGTTGTCTATG+TGG | + | chr8_4:8709740-8709759 | None:intergenic | 40.0% |
| ! | AGTAGAGGTACATAAAGTGG+AGG | - | chr8_4:8709903-8709922 | Msa1311800:intron | 40.0% |
| TATGTTAACCGCCCACTAAA+GGG | - | chr8_4:8710143-8710162 | Msa1311800:intron | 40.0% | |
| TTGACATTTGGCCCTTTAGT+GGG | + | chr8_4:8710157-8710176 | None:intergenic | 40.0% | |
| !! | TTTTGGGAGGTATATGCAAG+AGG | - | chr8_4:8710208-8710227 | Msa1311800:intron | 40.0% |
| AGTGCTTCTATGTGAAGCAT+AGG | - | chr8_4:8710352-8710371 | Msa1311800:intron | 40.0% | |
| GTGCTTCTATGTGAAGCATA+GGG | - | chr8_4:8710353-8710372 | Msa1311800:intron | 40.0% | |
| TGCTTCTATGTGAAGCATAG+GGG | - | chr8_4:8710354-8710373 | Msa1311800:intron | 40.0% | |
| !!! | CATAGGGGGCATGAATTTTT+TGG | - | chr8_4:8710369-8710388 | Msa1311800:intron | 40.0% |
| ATTGTCTGTGAGAGGATGTA+AGG | - | chr8_4:8710468-8710487 | Msa1311800:intron | 40.0% | |
| TTGTCTGTGAGAGGATGTAA+GGG | - | chr8_4:8710469-8710488 | Msa1311800:intron | 40.0% | |
| ACTTCGATCTAGGAAAGCAA+TGG | - | chr8_4:8710645-8710664 | Msa1311800:intron | 40.0% | |
| CTGCATTCACGGATCAATAT+TGG | + | chr8_4:8710905-8710924 | None:intergenic | 40.0% | |
| ATATTGATCCGTGAATGCAG+TGG | - | chr8_4:8710905-8710924 | Msa1311800:intron | 40.0% | |
| TGGAGTTGAACCCCAATTAT+GGG | - | chr8_4:8710925-8710944 | Msa1311800:intron | 40.0% | |
| CCATATCTTGCCCATAATTG+GGG | + | chr8_4:8710938-8710957 | None:intergenic | 40.0% | |
| TTCCTGTTATGAAACTAGGG+GGG | + | chr8_4:8711029-8711048 | None:intergenic | 40.0% | |
| TCCAAGTTCGGTCATGTTAA+GGG | + | chr8_4:8711295-8711314 | None:intergenic | 40.0% | |
| ATCCAAGTTCGGTCATGTTA+AGG | + | chr8_4:8711296-8711315 | None:intergenic | 40.0% | |
| CTGCAAAGTCATTGTATCTC+TGG | - | chr8_4:8711457-8711476 | Msa1311800:intron | 40.0% | |
| CTCGAAGATATGGTAAAAGC+AGG | - | chr8_4:8711645-8711664 | Msa1311800:intron | 40.0% | |
| CGAAGATATGGTAAAAGCAG+GGG | - | chr8_4:8711647-8711666 | Msa1311800:intron | 40.0% | |
| TGTTATTACAGTGCGACTCT+TGG | - | chr8_4:8711741-8711760 | Msa1311800:intron | 40.0% | |
| !! | TATGTATCGACTAAGCAACC+TGG | - | chr8_4:8711925-8711944 | Msa1311800:five_prime_UTR | 40.0% |
| TGGGTCTTTGCTTGAGTAGT+TGG | - | chr8_4:8708982-8709001 | Msa1311800:intron | 45.0% | |
| !!! | ATTTTGGTTGCAGCATGCTG+CGG | - | chr8_4:8709288-8709307 | Msa1311800:intron | 45.0% |
| TGCTGCGGCAGTTTATATTG+TGG | - | chr8_4:8709303-8709322 | Msa1311800:intron | 45.0% | |
| ATTTCGTCCGAAATTGCTGG+TGG | - | chr8_4:8709381-8709400 | Msa1311800:intron | 45.0% | |
| TTTCGTCCGAAATTGCTGGT+GGG | - | chr8_4:8709382-8709401 | Msa1311800:intron | 45.0% | |
| AAAAAATTGTGGGGAGGGAG+GGG | + | chr8_4:8709427-8709446 | None:intergenic | 45.0% | |
| CAAAAAATTGTGGGGAGGGA+GGG | + | chr8_4:8709428-8709447 | None:intergenic | 45.0% | |
| ! | GGTATAGTGGGGTGCTTAAT+TGG | - | chr8_4:8709481-8709500 | Msa1311800:intron | 45.0% |
| CCATGTAGTTGGTTGAACAG+AGG | + | chr8_4:8709529-8709548 | None:intergenic | 45.0% | |
| CCTCTGTTCAACCAACTACA+TGG | - | chr8_4:8709526-8709545 | Msa1311800:intron | 45.0% | |
| ! | AGCTGTTGCTTCCAAAGTCT+AGG | - | chr8_4:8709840-8709859 | Msa1311800:CDS | 45.0% |
| GGATGGATCAACCTAGACTT+TGG | + | chr8_4:8709854-8709873 | None:intergenic | 45.0% | |
| AGCAAAAACTGGTCAAGTCG+TGG | - | chr8_4:8710013-8710032 | Msa1311800:intron | 45.0% | |
| TCAAGTCGTGGCTACTTCAT+TGG | - | chr8_4:8710025-8710044 | Msa1311800:intron | 45.0% | |
| GTTAACATAGCCAACCTCCT+TGG | + | chr8_4:8710132-8710151 | None:intergenic | 45.0% | |
| CTATGTTAACCGCCCACTAA+AGG | - | chr8_4:8710142-8710161 | Msa1311800:intron | 45.0% | |
| GTTGACATTTGGCCCTTTAG+TGG | + | chr8_4:8710158-8710177 | None:intergenic | 45.0% | |
| CTACTTGGGCAGTTGACATT+TGG | + | chr8_4:8710169-8710188 | None:intergenic | 45.0% | |
| TACCTCCCAAAATTAGGCCT+AGG | + | chr8_4:8710200-8710219 | None:intergenic | 45.0% | |
| !! | TATATGCAAGAGGTGTCCTG+AGG | - | chr8_4:8710218-8710237 | Msa1311800:intron | 45.0% |
| !! | ATATGCAAGAGGTGTCCTGA+GGG | - | chr8_4:8710219-8710238 | Msa1311800:intron | 45.0% |
| ! | TTTTGCCAAAAGCAGAGAGG+AGG | - | chr8_4:8710243-8710262 | Msa1311800:intron | 45.0% |
| GCTTCTATGTGAAGCATAGG+GGG | - | chr8_4:8710355-8710374 | Msa1311800:intron | 45.0% | |
| !!! | AGGGGGCATGAATTTTTTGG+AGG | - | chr8_4:8710372-8710391 | Msa1311800:intron | 45.0% |
| !!! | GGGGGCATGAATTTTTTGGA+GGG | - | chr8_4:8710373-8710392 | Msa1311800:intron | 45.0% |
| !! | GCTCTTTAGCTTGCATCGTT+AGG | - | chr8_4:8710560-8710579 | Msa1311800:intron | 45.0% |
| ATGCCTTGTGATGACTGTTG+AGG | - | chr8_4:8710601-8710620 | Msa1311800:intron | 45.0% | |
| TCACCTCAACAGTCATCACA+AGG | + | chr8_4:8710607-8710626 | None:intergenic | 45.0% | |
| GATCTAGGAAAGCAATGGCA+TGG | - | chr8_4:8710650-8710669 | Msa1311800:intron | 45.0% | |
| GTTCAACTCCACTGCATTCA+CGG | + | chr8_4:8710916-8710935 | None:intergenic | 45.0% | |
| GTGGAGTTGAACCCCAATTA+TGG | - | chr8_4:8710924-8710943 | Msa1311800:intron | 45.0% | |
| CCCCAATTATGGGCAAGATA+TGG | - | chr8_4:8710935-8710954 | Msa1311800:intron | 45.0% | |
| TTCCCCCCTAGTTTCATAAC+AGG | - | chr8_4:8711024-8711043 | Msa1311800:intron | 45.0% | |
| !! | CGTTGAGAAAGGCATCAAAC+TGG | - | chr8_4:8711590-8711609 | Msa1311800:intron | 45.0% |
| !! | GAGAAAGGCATCAAACTGGA+AGG | - | chr8_4:8711594-8711613 | Msa1311800:intron | 45.0% |
| TTCGTCCGAAATTGCTGGTG+GGG | - | chr8_4:8709383-8709402 | Msa1311800:intron | 50.0% | |
| GCAAAAAATTGTGGGGAGGG+AGG | + | chr8_4:8709429-8709448 | None:intergenic | 50.0% | |
| AGGCACATTTGCCTGCATCT+TGG | - | chr8_4:8709923-8709942 | Msa1311800:intron | 50.0% | |
| ATAGGACAAGGCTGATGCCA+AGG | - | chr8_4:8710112-8710131 | Msa1311800:intron | 50.0% | |
| ACATTTGGCCCTTTAGTGGG+CGG | + | chr8_4:8710154-8710173 | None:intergenic | 50.0% | |
| TGTCAACTGCCCAAGTAGCT+AGG | - | chr8_4:8710171-8710190 | Msa1311800:intron | 50.0% | |
| GTCAACTGCCCAAGTAGCTA+GGG | - | chr8_4:8710172-8710191 | Msa1311800:intron | 50.0% | |
| ! | AGGGAGCCTAGGCCTAATTT+TGG | - | chr8_4:8710191-8710210 | Msa1311800:intron | 50.0% |
| ! | GGGAGCCTAGGCCTAATTTT+GGG | - | chr8_4:8710192-8710211 | Msa1311800:intron | 50.0% |
| ! | AGCCTAGGCCTAATTTTGGG+AGG | - | chr8_4:8710195-8710214 | Msa1311800:intron | 50.0% |
| !! | TATGCAAGAGGTGTCCTGAG+GGG | - | chr8_4:8710220-8710239 | Msa1311800:intron | 50.0% |
| ! | TGCTTTTGGCAAAACCCCTC+AGG | + | chr8_4:8710237-8710256 | None:intergenic | 50.0% |
| ! | GGGTTTTGCCAAAAGCAGAG+AGG | - | chr8_4:8710240-8710259 | Msa1311800:intron | 50.0% |
| AGAGGAGGATGCGAGAGATA+AGG | - | chr8_4:8710258-8710277 | Msa1311800:intron | 50.0% | |
| GATGCAAGCTAAAGAGCCAC+TGG | + | chr8_4:8710557-8710576 | None:intergenic | 50.0% | |
| AGGAAAGCAATGGCATGGAG+AGG | - | chr8_4:8710655-8710674 | Msa1311800:intron | 50.0% | |
| ATGAGCTTGCAGGAGATGAC+TGG | + | chr8_4:8710723-8710742 | None:intergenic | 50.0% | |
| AACCTTGCAGATGAGCTTGC+AGG | + | chr8_4:8710733-8710752 | None:intergenic | 50.0% | |
| GCCCTTAACATGACCGAACT+TGG | - | chr8_4:8711291-8711310 | Msa1311800:intron | 50.0% | |
| CCTTTCTCAACGCCCAAATC+TGG | + | chr8_4:8711582-8711601 | None:intergenic | 50.0% | |
| !! | CCAGATTTGGGCGTTGAGAA+AGG | - | chr8_4:8711579-8711598 | Msa1311800:intron | 50.0% |
| TGTGGTAAAGTGTGGCTGGC+TGG | - | chr8_4:8709321-8709340 | Msa1311800:intron | 55.0% | |
| TCCGAAATTGCTGGTGGGGT+GGG | - | chr8_4:8709387-8709406 | Msa1311800:intron | 55.0% | |
| AAGGCTGATGCCAAGGAGGT+TGG | - | chr8_4:8710119-8710138 | Msa1311800:intron | 55.0% | |
| CCTAGGCTCCCTAGCTACTT+GGG | + | chr8_4:8710183-8710202 | None:intergenic | 55.0% | |
| ! | CGCATCCTCCTCTCTGCTTT+TGG | + | chr8_4:8710251-8710270 | None:intergenic | 55.0% |
| CTCCTGCAAGCTCATCTGCA+AGG | - | chr8_4:8710728-8710747 | Msa1311800:intron | 55.0% | |
| GTCCGAAATTGCTGGTGGGG+TGG | - | chr8_4:8709386-8709405 | Msa1311800:intron | 60.0% | |
| CCCCACCCCACCAGCAATTT+CGG | + | chr8_4:8709391-8709410 | None:intergenic | 60.0% | |
| CCGAAATTGCTGGTGGGGTG+GGG | - | chr8_4:8709388-8709407 | Msa1311800:intron | 60.0% | |
| CGAAATTGCTGGTGGGGTGG+GGG | - | chr8_4:8709389-8709408 | Msa1311800:intron | 60.0% | |
| GGACAAGGCTGATGCCAAGG+AGG | - | chr8_4:8710115-8710134 | Msa1311800:intron | 60.0% | |
| CCCAAGTAGCTAGGGAGCCT+AGG | - | chr8_4:8710180-8710199 | Msa1311800:intron | 60.0% | |
| GCCTAGGCTCCCTAGCTACT+TGG | + | chr8_4:8710184-8710203 | None:intergenic | 60.0% | |
| AATTGCTGGTGGGGTGGGGG+TGG | - | chr8_4:8709392-8709411 | Msa1311800:intron | 65.0% | |
| ATTGCTGGTGGGGTGGGGGT+GGG | - | chr8_4:8709393-8709412 | Msa1311800:intron | 65.0% | |
| TTGCTGGTGGGGTGGGGGTG+GGG | - | chr8_4:8709394-8709413 | Msa1311800:intron | 70.0% | |
| TGCTGGTGGGGTGGGGGTGG+GGG | - | chr8_4:8709395-8709414 | Msa1311800:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 8708550 | 8711997 | 8708550 | ID=Msa1311800;Name=Msa1311800 |
| chr8_4 | mRNA | 8708550 | 8711997 | 8708550 | ID=Msa1311800-mRNA-1;Parent=Msa1311800;Name=Msa1311800-mRNA-1;_AED=0.00;_eAED=0.00;_QI=114|1|1|1|0.66|0.75|4|311|98 |
| chr8_4 | exon | 8708550 | 8708964 | 8708550 | ID=Msa1311800-mRNA-1:exon:3211;Parent=Msa1311800-mRNA-1 |
| chr8_4 | exon | 8709591 | 8709697 | 8709591 | ID=Msa1311800-mRNA-1:exon:3210;Parent=Msa1311800-mRNA-1 |
| chr8_4 | exon | 8709798 | 8709890 | 8709798 | ID=Msa1311800-mRNA-1:exon:3209;Parent=Msa1311800-mRNA-1 |
| chr8_4 | exon | 8711891 | 8711997 | 8711891 | ID=Msa1311800-mRNA-1:exon:3208;Parent=Msa1311800-mRNA-1 |
| chr8_4 | five_prime_UTR | 8711891 | 8711997 | 8711891 | ID=Msa1311800-mRNA-1:five_prime_utr;Parent=Msa1311800-mRNA-1 |
| chr8_4 | five_prime_UTR | 8709884 | 8709890 | 8709884 | ID=Msa1311800-mRNA-1:five_prime_utr;Parent=Msa1311800-mRNA-1 |
| chr8_4 | CDS | 8709798 | 8709883 | 8709798 | ID=Msa1311800-mRNA-1:cds;Parent=Msa1311800-mRNA-1 |
| chr8_4 | CDS | 8709591 | 8709697 | 8709591 | ID=Msa1311800-mRNA-1:cds;Parent=Msa1311800-mRNA-1 |
| chr8_4 | CDS | 8708861 | 8708964 | 8708861 | ID=Msa1311800-mRNA-1:cds;Parent=Msa1311800-mRNA-1 |
| chr8_4 | three_prime_UTR | 8708550 | 8708860 | 8708550 | ID=Msa1311800-mRNA-1:three_prime_utr;Parent=Msa1311800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
