Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1232240 | XP_013444242.1 | 95.473 | 729 | 33 | 0 | 10 | 738 | 1 | 729 | 0.0 | 1418 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1232240 | sp|Q657D6|ELF32_ORYSJ | 34.499 | 429 | 239 | 16 | 324 | 737 | 337 | 738 | 8.34e-50 | 190 |
| Msa1232240 | sp|Q657D6|ELF32_ORYSJ | 52.000 | 75 | 31 | 3 | 15 | 85 | 13 | 86 | 9.08e-13 | 75.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1232240 | Msa1270790 | 0.970460 | 1.191691e-131 | -8.615850e-47 |
| Msa1232240 | Msa1313070 | 0.977623 | 3.759485e-144 | -8.615850e-47 |
| Msa1180080 | Msa1232240 | 0.962561 | 5.035951e-121 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1232240 | MtrunA17_Chr8g0341441 | 93.351 | 376 | 22 | 1 | 10 | 382 | 1 | 376 | 0.0 | 716 |
| Msa1232240 | MtrunA17_Chr8g0341451 | 96.848 | 349 | 11 | 0 | 390 | 738 | 1 | 349 | 0.0 | 696 |
| Msa1232240 | MtrunA17_Chr3g0135361 | 39.098 | 399 | 195 | 11 | 358 | 737 | 314 | 683 | 2.68e-62 | 221 |
| Msa1232240 | MtrunA17_Chr3g0135361 | 73.469 | 49 | 13 | 0 | 10 | 58 | 1 | 49 | 7.79e-16 | 81.6 |
| Msa1232240 | MtrunA17_Chr1g0151881 | 35.990 | 414 | 212 | 16 | 345 | 737 | 327 | 708 | 2.05e-45 | 173 |
| Msa1232240 | MtrunA17_Chr1g0151881 | 71.429 | 49 | 11 | 2 | 9 | 56 | 62 | 108 | 1.72e-13 | 74.3 |
| Msa1232240 | MtrunA17_Chr7g0220041 | 72.131 | 61 | 17 | 0 | 445 | 505 | 50 | 110 | 8.65e-20 | 85.5 |
| Msa1232240 | MtrunA17_Chr8g0341431 | 83.721 | 43 | 7 | 0 | 10 | 52 | 1 | 43 | 1.10e-18 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1232240 | AT3G21320.1 | 33.588 | 393 | 178 | 12 | 346 | 737 | 223 | 533 | 1.17e-41 | 160 |
| Msa1232240 | AT2G25930.1 | 41.969 | 193 | 84 | 6 | 358 | 539 | 314 | 489 | 1.90e-32 | 134 |
| Msa1232240 | AT2G25930.1 | 70.370 | 54 | 16 | 0 | 10 | 63 | 1 | 54 | 1.63e-16 | 84.3 |
Find 139 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGACTCACTTGCTGATTT+TGG | 0.081692 | 8_2:-8562706 | None:intergenic |
| AATTATGGCAATCATCATTT+AGG | 0.100912 | 8_2:+8562007 | Msa1232240:CDS |
| TTGCGGACAAAATCAATTTA+AGG | 0.138535 | 8_2:+8560040 | Msa1232240:CDS |
| TAAATAATCGTGTTGAATTT+TGG | 0.172071 | 8_2:-8559554 | None:intergenic |
| GTTAATCTTTCTAGAATTAT+AGG | 0.175238 | 8_2:-8559473 | None:intergenic |
| CAAAAGATTCGGCTCCTTTC+CGG | 0.186551 | 8_2:+8562292 | Msa1232240:CDS |
| AATAATCAGCTTTCAAATTA+TGG | 0.193309 | 8_2:+8561992 | Msa1232240:CDS |
| AAACCTCTTCACTCATTAAA+TGG | 0.208223 | 8_2:+8559847 | Msa1232240:CDS |
| TTATTCCTTGGAGGTGCTTT+TGG | 0.238890 | 8_2:-8558640 | None:intergenic |
| AAAGTCAGATTGTAACTTAT+TGG | 0.265253 | 8_2:-8561840 | None:intergenic |
| TTGTGCTGATTTCAGTTCTA+TGG | 0.271781 | 8_2:-8559761 | None:intergenic |
| CATCTTTATGCTCTTTCATT+AGG | 0.275651 | 8_2:-8559795 | None:intergenic |
| GAACTGAAATCAGCACAATA+TGG | 0.287107 | 8_2:+8559766 | Msa1232240:CDS |
| CTCCCTTGATTGAAGCTCAT+TGG | 0.290810 | 8_2:-8562226 | None:intergenic |
| GACGATGTCGTAGGACTTAT+AGG | 0.304496 | 8_2:+8560243 | Msa1232240:CDS |
| TGAGTTGCATAGACTTATAA+AGG | 0.318584 | 8_2:+8561640 | Msa1232240:CDS |
| GATTTCAGTTCTATGGTTCC+AGG | 0.329217 | 8_2:-8559754 | None:intergenic |
| CTCGGAAGTAGTGGCCTTCT+CGG | 0.331350 | 8_2:-8561906 | None:intergenic |
| GTCATGATGCCGCCAGCATT+TGG | 0.332846 | 8_2:-8562181 | None:intergenic |
| ATTATGGCAATCATCATTTA+GGG | 0.333611 | 8_2:+8562008 | Msa1232240:CDS |
| CATTGGTTTGGTGGTGGTGG+AGG | 0.338285 | 8_2:-8562094 | None:intergenic |
| TGCGGACAAAATCAATTTAA+GGG | 0.338609 | 8_2:+8560041 | Msa1232240:CDS |
| TTCCGTTGGCACCGACGTTT+TGG | 0.341515 | 8_2:+8562608 | Msa1232240:CDS |
| TTGTATTGATTTGAATATCT+TGG | 0.349172 | 8_2:-8562731 | None:intergenic |
| TTGGAGGAGGATGTTTCTAT+TGG | 0.366194 | 8_2:-8561821 | None:intergenic |
| GGCATCATGACACCGTTATA+CGG | 0.367402 | 8_2:+8562193 | Msa1232240:CDS |
| AGCACCTCCAAGGAATAAAA+TGG | 0.370824 | 8_2:+8558645 | Msa1232240:CDS |
| GACAATGCTTGGAGAGTGTT+TGG | 0.375029 | 8_2:-8562068 | None:intergenic |
| TCCAGCTCAGAATGTAGATT+TGG | 0.376287 | 8_2:+8560204 | Msa1232240:CDS |
| AATTCTCTGAAAACACTTGA+TGG | 0.378584 | 8_2:+8559592 | Msa1232240:CDS |
| GGAACTGTACAATTTCTTAG+AGG | 0.379244 | 8_2:-8558739 | None:intergenic |
| ATCTTTAATCGATGAGTTTG+AGG | 0.386250 | 8_2:-8559893 | None:intergenic |
| GGAGGGCATGGTCCAATGAT+TGG | 0.389281 | 8_2:-8562160 | None:intergenic |
| TTACTCTTGAGTGATGTTCC+TGG | 0.400202 | 8_2:-8562663 | None:intergenic |
| GAACAAATGGCACAATCTAA+TGG | 0.402223 | 8_2:+8562388 | Msa1232240:CDS |
| AGATGGACTTTGGTACAATA+TGG | 0.411206 | 8_2:-8562449 | None:intergenic |
| TTCTGAGCTGGATTTATTCA+AGG | 0.414643 | 8_2:-8560193 | None:intergenic |
| GATTAACTCAACCAAGTTGA+TGG | 0.415492 | 8_2:+8559489 | Msa1232240:CDS |
| GAGGAGGATGTTTCTATTGG+TGG | 0.417064 | 8_2:-8561818 | None:intergenic |
| TTATCTTCCAATGATTGATA+AGG | 0.419667 | 8_2:-8562517 | None:intergenic |
| AGCTTCTTCTGTTGAACAAA+TGG | 0.420994 | 8_2:+8562375 | Msa1232240:CDS |
| CAAACTCATCGATTAAAGAT+AGG | 0.423296 | 8_2:+8559896 | Msa1232240:CDS |
| AAGTCTAAATTCATTTAGAA+AGG | 0.432222 | 8_2:+8559720 | Msa1232240:CDS |
| CTTGTATATAAGCCAATCAT+TGG | 0.432861 | 8_2:+8562148 | Msa1232240:CDS |
| AACCATTGGTTTGGTGGTGG+TGG | 0.433826 | 8_2:-8562097 | None:intergenic |
| ATAAGTCCTACGACATCGTC+AGG | 0.442802 | 8_2:-8560240 | None:intergenic |
| AGGGAGCAAAGATGTTGCTT+TGG | 0.442973 | 8_2:+8562243 | Msa1232240:CDS |
| CAATTGTGGTAATGATGAAC+CGG | 0.446932 | 8_2:-8562311 | None:intergenic |
| AACTGAAATCAGCACAATAT+GGG | 0.453932 | 8_2:+8559767 | Msa1232240:CDS |
| TAGAGTGTGGGAAAAGGAAT+AGG | 0.454158 | 8_2:+8558536 | Msa1232240:CDS |
| ACAGGAACTAACCATTGGTT+TGG | 0.456496 | 8_2:-8562106 | None:intergenic |
| ATCTGAGTGGACATGTTAGA+TGG | 0.457018 | 8_2:-8562466 | None:intergenic |
| TTGCTTATATTGTTGACAAA+AGG | 0.457324 | 8_2:-8561965 | None:intergenic |
| TGTTCTGGTGAGTTAGAAAT+CGG | 0.463956 | 8_2:+8560105 | Msa1232240:CDS |
| CAGGTGCAAAGATTAATTGC+TGG | 0.467595 | 8_2:+8561752 | Msa1232240:intron |
| TCATCACTCGAGTCGCGATC+TGG | 0.473501 | 8_2:-8562637 | None:intergenic |
| TGAACTTCCTTTGTTTCCGT+TGG | 0.475130 | 8_2:+8562594 | Msa1232240:CDS |
| GGAACTAACCATTGGTTTGG+TGG | 0.475844 | 8_2:-8562103 | None:intergenic |
| CTCAGAATGTAGATTTGGTA+TGG | 0.477158 | 8_2:+8560209 | Msa1232240:CDS |
| AGATAAGTCCAATGTTTCCT+AGG | 0.478791 | 8_2:+8558587 | Msa1232240:CDS |
| ATTGGTTTGGTGGTGGTGGA+GGG | 0.489254 | 8_2:-8562093 | None:intergenic |
| GGAAAAGGAATAGGATGAAA+GGG | 0.500824 | 8_2:+8558545 | Msa1232240:CDS |
| GGACCATGCCCTCCAAATGC+TGG | 0.503398 | 8_2:+8562169 | Msa1232240:CDS |
| CACTCAGATAAGTCATGTAA+TGG | 0.505804 | 8_2:+8562480 | Msa1232240:CDS |
| TCAAATCAATACAAGAAGAA+AGG | 0.508378 | 8_2:+8562740 | Msa1232240:CDS |
| GACCAAAACGTCGGTGCCAA+CGG | 0.510563 | 8_2:-8562610 | None:intergenic |
| GCTTGGAGAGTGTTTGGCAT+TGG | 0.511051 | 8_2:-8562062 | None:intergenic |
| CCGCCAGCATTTGGAGGGCA+TGG | 0.511195 | 8_2:-8562172 | None:intergenic |
| AGTTGATAGAGTGTGGGAAA+AGG | 0.515998 | 8_2:+8558530 | None:intergenic |
| ATGAAAGGGGCAATTGATGA+GGG | 0.519543 | 8_2:+8558559 | Msa1232240:CDS |
| AAACCATTTAATGAGTGAAG+AGG | 0.525892 | 8_2:-8559850 | None:intergenic |
| CATGTTAAAGATGCAGAGAA+AGG | 0.525917 | 8_2:+8558613 | Msa1232240:CDS |
| GTCATGACTCGCCATCAACT+TGG | 0.526256 | 8_2:-8559500 | None:intergenic |
| GATGTTGAAAACAATGCAGT+TGG | 0.526264 | 8_2:+8561929 | Msa1232240:CDS |
| CCTTCAGATGGAGACATGAC+AGG | 0.527768 | 8_2:-8562124 | None:intergenic |
| AGATAGAACAGAAGATGCAT+TGG | 0.527977 | 8_2:-8559437 | None:intergenic |
| GTCAGATTGTAACTTATTGG+AGG | 0.529126 | 8_2:-8561837 | None:intergenic |
| ACACCGTTATACGGCGGTTG+CGG | 0.531143 | 8_2:+8562202 | Msa1232240:CDS |
| AGGGGCAATTGATGAGGGAA+AGG | 0.532495 | 8_2:+8558564 | Msa1232240:CDS |
| GGTGGAGGGTAGACAATGCT+TGG | 0.536767 | 8_2:-8562079 | None:intergenic |
| GGACCGCAACCGCCGTATAA+CGG | 0.538073 | 8_2:-8562205 | None:intergenic |
| ACATGCAACCTAGGAAACAT+TGG | 0.538119 | 8_2:-8558595 | None:intergenic |
| GTCGGTGCCAACGGAAACAA+AGG | 0.540047 | 8_2:-8562601 | None:intergenic |
| GTCCAATGAGCTTCAATCAA+GGG | 0.540098 | 8_2:+8562224 | Msa1232240:CDS |
| ATGATGCCGCCAGCATTTGG+AGG | 0.540356 | 8_2:-8562178 | None:intergenic |
| TGAAAACTTGTAGTAAGAGA+TGG | 0.542446 | 8_2:-8562268 | None:intergenic |
| CCTGTCATGTCTCCATCTGA+AGG | 0.543651 | 8_2:+8562124 | Msa1232240:CDS |
| CCTCACATGGCAAGAGAGAG+AGG | 0.543818 | 8_2:+8560136 | Msa1232240:CDS |
| CTCACATGGCTTGATGTTGT+AGG | 0.545092 | 8_2:-8558760 | None:intergenic |
| ACTGTGTTGCAGCTTGGTTG+TGG | 0.548312 | 8_2:+8559391 | Msa1232240:intron |
| GGTCCAATGAGCTTCAATCA+AGG | 0.550030 | 8_2:+8562223 | Msa1232240:CDS |
| ACCAAATCTACATTCTGAGC+TGG | 0.550325 | 8_2:-8560205 | None:intergenic |
| GAGAGAGAGGAGTAAAGATG+AGG | 0.552298 | 8_2:+8560149 | Msa1232240:CDS |
| TTATATTGTTGACAAAAGGA+AGG | 0.553495 | 8_2:-8561961 | None:intergenic |
| ATAGATCTATGCATGAATGA+TGG | 0.554260 | 8_2:-8562349 | None:intergenic |
| AGATTGTAACTTATTGGAGG+AGG | 0.555000 | 8_2:-8561834 | None:intergenic |
| TAAAGAACAAATATCGCTGA+AGG | 0.556742 | 8_2:+8559936 | Msa1232240:CDS |
| TTTATGAGTTGATAGAGTGT+GGG | 0.556933 | 8_2:+8558524 | None:intergenic |
| TTCAACATCCTCGGAAGTAG+TGG | 0.557898 | 8_2:-8561915 | None:intergenic |
| GAACTGTACAATTTCTTAGA+GGG | 0.558318 | 8_2:-8558738 | None:intergenic |
| TATATTGTTGACAAAAGGAA+GGG | 0.559969 | 8_2:-8561960 | None:intergenic |
| GCATCTTTAACATGCAACCT+AGG | 0.561825 | 8_2:-8558604 | None:intergenic |
| TGGACATGTTAGATGGACTT+TGG | 0.571560 | 8_2:-8562459 | None:intergenic |
| GATGAAAGGGGCAATTGATG+AGG | 0.571714 | 8_2:+8558558 | Msa1232240:CDS |
| GATAGCTTGAAAACATTGCA+AGG | 0.578106 | 8_2:+8559982 | Msa1232240:CDS |
| CCTCTCTCTCTTGCCATGTG+AGG | 0.581603 | 8_2:-8560136 | None:intergenic |
| AAAACATTGCAAGGTAGCAA+TGG | 0.584093 | 8_2:+8559991 | Msa1232240:CDS |
| CTCCACCACCACCAAACCAA+TGG | 0.587899 | 8_2:+8562095 | Msa1232240:CDS |
| ACTAACCATTGGTTTGGTGG+TGG | 0.588211 | 8_2:-8562100 | None:intergenic |
| ACATGACAGGAACTAACCAT+TGG | 0.588830 | 8_2:-8562111 | None:intergenic |
| GGGAAAAGGAATAGGATGAA+AGG | 0.589801 | 8_2:+8558544 | Msa1232240:CDS |
| GTGAGTTAGAAATCGGTACA+AGG | 0.592224 | 8_2:+8560112 | Msa1232240:CDS |
| AGAAAGGTGATGAACTCACC+TGG | 0.605551 | 8_2:+8559736 | Msa1232240:CDS |
| CGACTCGAGTGATGAACACC+AGG | 0.605591 | 8_2:+8562645 | Msa1232240:CDS |
| CAATTTAAGGGATCACTGCA+TGG | 0.610874 | 8_2:+8560053 | Msa1232240:CDS |
| TGATGCCGCCAGCATTTGGA+GGG | 0.615550 | 8_2:-8562177 | None:intergenic |
| TTATCTTCAAACAATAGATG+TGG | 0.620025 | 8_2:-8561779 | None:intergenic |
| GAGGACCAAAAGCACCTCCA+AGG | 0.620299 | 8_2:+8558635 | Msa1232240:CDS |
| TAAGTCCTACGACATCGTCA+GGG | 0.620829 | 8_2:-8560239 | None:intergenic |
| GATGATGCAAAACTTTGTGA+AGG | 0.622948 | 8_2:-8558691 | None:intergenic |
| ACTCGACAGCAAGTCCGAGA+AGG | 0.633266 | 8_2:+8561892 | Msa1232240:CDS |
| ATTAAATGGTTTCGATGACA+CGG | 0.641685 | 8_2:+8559861 | Msa1232240:CDS |
| GTTAAAGATGCAGAGAAAGG+AGG | 0.642654 | 8_2:+8558616 | Msa1232240:CDS |
| GTGGTAATGATGAACCGGAA+AGG | 0.644906 | 8_2:-8562306 | None:intergenic |
| CGAGAAGGCCACTACTTCCG+AGG | 0.650322 | 8_2:+8561907 | Msa1232240:CDS |
| ATCGGTACAAGGTCCTCACA+TGG | 0.650514 | 8_2:+8560123 | Msa1232240:CDS |
| TATCTGCAGAGGCTAATGCA+AGG | 0.651421 | 8_2:-8562033 | None:intergenic |
| TTATATACAAGACCTTCAGA+TGG | 0.655581 | 8_2:-8562136 | None:intergenic |
| CCATGCCCTCCAAATGCTGG+CGG | 0.659409 | 8_2:+8562172 | Msa1232240:CDS |
| ACACATGGTGGTAACAATTG+TGG | 0.665840 | 8_2:-8562325 | None:intergenic |
| ATGATGCAAAACTTTGTGAA+GGG | 0.667865 | 8_2:-8558690 | None:intergenic |
| TGACTTAGAGCACATGACAC+CGG | 0.669331 | 8_2:+8559519 | Msa1232240:CDS |
| GAAAAGGAATAGGATGAAAG+GGG | 0.670384 | 8_2:+8558546 | Msa1232240:CDS |
| AAGTCCTACGACATCGTCAG+GGG | 0.680617 | 8_2:-8560238 | None:intergenic |
| TGCATGAATGATGGAACACA+TGG | 0.718592 | 8_2:-8562340 | None:intergenic |
| ATGAATGATGGAACACATGG+TGG | 0.732037 | 8_2:-8562337 | None:intergenic |
| CATTACATGACTTATCTGAG+TGG | 0.751211 | 8_2:-8562479 | None:intergenic |
| TCTGGTGATGACCAAAACGT+CGG | 0.752940 | 8_2:-8562619 | None:intergenic |
| ATCATGACACCGTTATACGG+CGG | 0.764220 | 8_2:+8562196 | Msa1232240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAACATCATAACTAAAA+TGG | - | chr8_2:8559372-8559391 | None:intergenic | 15.0% |
| !!! | ACTTTCGTATATAGAATTTT+CGG | + | chr8_2:8558856-8558875 | Msa1232240:intron | 20.0% |
| !!! | TATTTTTGTACCAATTTGTT+CGG | + | chr8_2:8558947-8558966 | Msa1232240:intron | 20.0% |
| !! | TTGTTCTAACAATATTTGTA+TGG | + | chr8_2:8559234-8559253 | Msa1232240:intron | 20.0% |
| !!! | GTTAATCTTTCTAGAATTAT+AGG | - | chr8_2:8559476-8559495 | None:intergenic | 20.0% |
| !!! | TAAATAATCGTGTTGAATTT+TGG | - | chr8_2:8559557-8559576 | None:intergenic | 20.0% |
| !! | AAGTCTAAATTCATTTAGAA+AGG | + | chr8_2:8559720-8559739 | Msa1232240:CDS | 20.0% |
| !!! | TTATAGGTGAAAAACAATTT+TGG | + | chr8_2:8560259-8560278 | Msa1232240:CDS | 20.0% |
| !!! | TTTTTCTCAATAGTTTTTCT+AGG | - | chr8_2:8561121-8561140 | None:intergenic | 20.0% |
| !!! | AGATTTTTTTGTAAGTTTTG+CGG | + | chr8_2:8561323-8561342 | Msa1232240:intron | 20.0% |
| !! | GTCTATTAACATATAGTATA+AGG | - | chr8_2:8561670-8561689 | None:intergenic | 20.0% |
| !! | AATAATCAGCTTTCAAATTA+TGG | + | chr8_2:8561992-8562011 | Msa1232240:CDS | 20.0% |
| !!! | TTGTATTGATTTGAATATCT+TGG | - | chr8_2:8562734-8562753 | None:intergenic | 20.0% |
| ! | CATACTTATGGTACAAAAAT+TGG | - | chr8_2:8558819-8558838 | None:intergenic | 25.0% |
| ! | GGTTCAAAAGTAAAAAGATA+CGG | - | chr8_2:8559207-8559226 | None:intergenic | 25.0% |
| !!! | TATCTTTTTACTTTTGAACC+AGG | + | chr8_2:8559207-8559226 | Msa1232240:intron | 25.0% |
| !!! | ATCTTTTTACTTTTGAACCA+GGG | + | chr8_2:8559208-8559227 | Msa1232240:intron | 25.0% |
| ! | ATAATTCAAACAATGACACT+TGG | + | chr8_2:8559293-8559312 | Msa1232240:intron | 25.0% |
| ! | ACTACTTAACCTTTATCATT+TGG | + | chr8_2:8559324-8559343 | Msa1232240:intron | 25.0% |
| !!! | ATTTTGGTAATTTGTTTTGC+CGG | - | chr8_2:8559541-8559560 | None:intergenic | 25.0% |
| ! | ATAGTGCAGATAAATAAGAT+AGG | - | chr8_2:8560423-8560442 | None:intergenic | 25.0% |
| ! | ATCTTCTTTATTATGTGCAT+AGG | + | chr8_2:8560441-8560460 | Msa1232240:intron | 25.0% |
| ! | GCAAAACATTTCTAACTTAA+AGG | + | chr8_2:8560643-8560662 | Msa1232240:intron | 25.0% |
| ! | AAATCTAGAGATTAATGAGT+TGG | + | chr8_2:8561138-8561157 | Msa1232240:intron | 25.0% |
| ! | TTCATGTACCAATTAATCTT+TGG | - | chr8_2:8561353-8561372 | None:intergenic | 25.0% |
| ! | ATCTAGTTAGATTTATGGTT+GGG | - | chr8_2:8561441-8561460 | None:intergenic | 25.0% |
| !!! | TTTGTATTTTGCTACTTACA+TGG | + | chr8_2:8561561-8561580 | Msa1232240:intron | 25.0% |
| ! | TTATCTTCAAACAATAGATG+TGG | - | chr8_2:8561782-8561801 | None:intergenic | 25.0% |
| ! | AAAGTCAGATTGTAACTTAT+TGG | - | chr8_2:8561843-8561862 | None:intergenic | 25.0% |
| ! | TATATTGTTGACAAAAGGAA+GGG | - | chr8_2:8561963-8561982 | None:intergenic | 25.0% |
| ! | TTATATTGTTGACAAAAGGA+AGG | - | chr8_2:8561964-8561983 | None:intergenic | 25.0% |
| ! | TTGCTTATATTGTTGACAAA+AGG | - | chr8_2:8561968-8561987 | None:intergenic | 25.0% |
| ! | AATTATGGCAATCATCATTT+AGG | + | chr8_2:8562007-8562026 | Msa1232240:CDS | 25.0% |
| ! | ATTATGGCAATCATCATTTA+GGG | + | chr8_2:8562008-8562027 | Msa1232240:CDS | 25.0% |
| !! | CAAGTTTTCATCAAAAGATT+CGG | + | chr8_2:8562281-8562300 | Msa1232240:CDS | 25.0% |
| !! | TTTTTCACCTTATCAATCAT+TGG | + | chr8_2:8562510-8562529 | Msa1232240:CDS | 25.0% |
| ! | TTATCTTCCAATGATTGATA+AGG | - | chr8_2:8562520-8562539 | None:intergenic | 25.0% |
| ! | TCAAATCAATACAAGAAGAA+AGG | + | chr8_2:8562740-8562759 | Msa1232240:CDS | 25.0% |
| ATGATGCAAAACTTTGTGAA+GGG | - | chr8_2:8558693-8558712 | None:intergenic | 30.0% | |
| GAACTGTACAATTTCTTAGA+GGG | - | chr8_2:8558741-8558760 | None:intergenic | 30.0% | |
| AGAGATAAGACTCATACTTA+TGG | - | chr8_2:8558831-8558850 | None:intergenic | 30.0% | |
| ! | TCGTATATAGAATTTTCGGT+AGG | + | chr8_2:8558860-8558879 | Msa1232240:intron | 30.0% |
| TTAACTGTTATGTACCCTTT+GGG | + | chr8_2:8558982-8559001 | Msa1232240:intron | 30.0% | |
| TATTGTTAGAACAATAACCC+TGG | - | chr8_2:8559228-8559247 | None:intergenic | 30.0% | |
| GAATTATGTCAAAAAAGTCC+TGG | - | chr8_2:8559280-8559299 | None:intergenic | 30.0% | |
| GTAGAATCACCAAATGATAA+AGG | - | chr8_2:8559336-8559355 | None:intergenic | 30.0% | |
| ! | AATTCTCTGAAAACACTTGA+TGG | + | chr8_2:8559592-8559611 | Msa1232240:CDS | 30.0% |
| ! | GAAGATGCTTTTATAACTTC+TGG | + | chr8_2:8559616-8559635 | Msa1232240:CDS | 30.0% |
| AACTGAAATCAGCACAATAT+GGG | + | chr8_2:8559767-8559786 | Msa1232240:CDS | 30.0% | |
| CATCTTTATGCTCTTTCATT+AGG | - | chr8_2:8559798-8559817 | None:intergenic | 30.0% | |
| AAACCTCTTCACTCATTAAA+TGG | + | chr8_2:8559847-8559866 | Msa1232240:CDS | 30.0% | |
| AAACCATTTAATGAGTGAAG+AGG | - | chr8_2:8559853-8559872 | None:intergenic | 30.0% | |
| ATTAAATGGTTTCGATGACA+CGG | + | chr8_2:8559861-8559880 | Msa1232240:CDS | 30.0% | |
| ATCTTTAATCGATGAGTTTG+AGG | - | chr8_2:8559896-8559915 | None:intergenic | 30.0% | |
| ! | CAAACTCATCGATTAAAGAT+AGG | + | chr8_2:8559896-8559915 | Msa1232240:CDS | 30.0% |
| TAAAGAACAAATATCGCTGA+AGG | + | chr8_2:8559936-8559955 | Msa1232240:CDS | 30.0% | |
| TTGCGGACAAAATCAATTTA+AGG | + | chr8_2:8560040-8560059 | Msa1232240:CDS | 30.0% | |
| TGCGGACAAAATCAATTTAA+GGG | + | chr8_2:8560041-8560060 | Msa1232240:CDS | 30.0% | |
| AGTGATTTCCAAAAATGTTC+TGG | + | chr8_2:8560090-8560109 | Msa1232240:CDS | 30.0% | |
| ATTATGTGCATAGGACTTAT+AGG | + | chr8_2:8560450-8560469 | Msa1232240:intron | 30.0% | |
| TAAATGGGAGATTATAGACT+TGG | + | chr8_2:8560543-8560562 | Msa1232240:intron | 30.0% | |
| TAGAAGCAAACCAAAGTATA+TGG | + | chr8_2:8560601-8560620 | Msa1232240:intron | 30.0% | |
| AACTTGCATTCCATATACTT+TGG | - | chr8_2:8560614-8560633 | None:intergenic | 30.0% | |
| TCACACATTTCAAATATCCT+AGG | + | chr8_2:8560696-8560715 | Msa1232240:intron | 30.0% | |
| ! | CATTTTGTACTGTTCTACTA+TGG | - | chr8_2:8560723-8560742 | None:intergenic | 30.0% |
| TAGTAGAACAGTACAAAATG+AGG | + | chr8_2:8560723-8560742 | Msa1232240:intron | 30.0% | |
| GTAAACTATTCAATTCAAGC+AGG | + | chr8_2:8560759-8560778 | Msa1232240:intron | 30.0% | |
| !! | ATGCTACTTTATATCACATG+AGG | - | chr8_2:8560805-8560824 | None:intergenic | 30.0% |
| ATTAGAGAGAGAGTAAAAGA+TGG | + | chr8_2:8560986-8561005 | Msa1232240:intron | 30.0% | |
| GACATGTAGATTCTTTAGTA+AGG | + | chr8_2:8561048-8561067 | Msa1232240:intron | 30.0% | |
| ATGATATACGACAGAACATT+AGG | + | chr8_2:8561169-8561188 | Msa1232240:intron | 30.0% | |
| ! | TAGTTATCGCAATATCGATT+TGG | - | chr8_2:8561268-8561287 | None:intergenic | 30.0% |
| TTGATATGTCAACATATACG+TGG | - | chr8_2:8561299-8561318 | None:intergenic | 30.0% | |
| GGACTTAAAGTTAGTGTAAT+AGG | - | chr8_2:8561420-8561439 | None:intergenic | 30.0% | |
| GATCTAGTTAGATTTATGGT+TGG | - | chr8_2:8561442-8561461 | None:intergenic | 30.0% | |
| GGATGATCTAGTTAGATTTA+TGG | - | chr8_2:8561446-8561465 | None:intergenic | 30.0% | |
| TGAGTTGCATAGACTTATAA+AGG | + | chr8_2:8561640-8561659 | Msa1232240:CDS | 30.0% | |
| CTAAACCATATCCTAAAAAC+AGG | + | chr8_2:8561733-8561752 | Msa1232240:intron | 30.0% | |
| !! | TAATCTTTGCACCTGTTTTT+AGG | - | chr8_2:8561747-8561766 | None:intergenic | 30.0% |
| TTATATACAAGACCTTCAGA+TGG | - | chr8_2:8562139-8562158 | None:intergenic | 30.0% | |
| CTTGTATATAAGCCAATCAT+TGG | + | chr8_2:8562148-8562167 | Msa1232240:CDS | 30.0% | |
| TGAAAACTTGTAGTAAGAGA+TGG | - | chr8_2:8562271-8562290 | None:intergenic | 30.0% | |
| ATAGATCTATGCATGAATGA+TGG | - | chr8_2:8562352-8562371 | None:intergenic | 30.0% | |
| ! | TTCATCTCTTTTCATTCTCT+TGG | - | chr8_2:8562578-8562597 | None:intergenic | 30.0% |
| GGAAAAGGAATAGGATGAAA+GGG | + | chr8_2:8558545-8558564 | Msa1232240:CDS | 35.0% | |
| GAAAAGGAATAGGATGAAAG+GGG | + | chr8_2:8558546-8558565 | Msa1232240:CDS | 35.0% | |
| AGATAAGTCCAATGTTTCCT+AGG | + | chr8_2:8558587-8558606 | Msa1232240:CDS | 35.0% | |
| CATGTTAAAGATGCAGAGAA+AGG | + | chr8_2:8558613-8558632 | Msa1232240:CDS | 35.0% | |
| !! | TAGAGAGCCATTTTATTCCT+TGG | - | chr8_2:8558655-8558674 | None:intergenic | 35.0% |
| GATGATGCAAAACTTTGTGA+AGG | - | chr8_2:8558694-8558713 | None:intergenic | 35.0% | |
| ! | TCACAAAGTTTTGCATCATC+AGG | + | chr8_2:8558694-8558713 | Msa1232240:CDS | 35.0% |
| GGAACTGTACAATTTCTTAG+AGG | - | chr8_2:8558742-8558761 | None:intergenic | 35.0% | |
| ATGAGTCATACCGAACAAAT+TGG | - | chr8_2:8558960-8558979 | None:intergenic | 35.0% | |
| GTTAACTGTTATGTACCCTT+TGG | + | chr8_2:8558981-8559000 | Msa1232240:intron | 35.0% | |
| ! | TCACAGCCTAACAAACTTTT+GGG | - | chr8_2:8559013-8559032 | None:intergenic | 35.0% |
| CAATATTTGAACACCGAGTT+CGG | - | chr8_2:8559167-8559186 | None:intergenic | 35.0% | |
| AGATAGAACAGAAGATGCAT+TGG | - | chr8_2:8559440-8559459 | None:intergenic | 35.0% | |
| ! | GATTAACTCAACCAAGTTGA+TGG | + | chr8_2:8559489-8559508 | Msa1232240:CDS | 35.0% |
| !! | TTGTGCTGATTTCAGTTCTA+TGG | - | chr8_2:8559764-8559783 | None:intergenic | 35.0% |
| GAACTGAAATCAGCACAATA+TGG | + | chr8_2:8559766-8559785 | Msa1232240:CDS | 35.0% | |
| GATAGCTTGAAAACATTGCA+AGG | + | chr8_2:8559982-8560001 | Msa1232240:CDS | 35.0% | |
| AAAACATTGCAAGGTAGCAA+TGG | + | chr8_2:8559991-8560010 | Msa1232240:CDS | 35.0% | |
| ! | TGAAGAACATGTAGCTTTTG+CGG | + | chr8_2:8560023-8560042 | Msa1232240:CDS | 35.0% |
| !! | TTTTGGAAATCACTCATTGC+TGG | - | chr8_2:8560084-8560103 | None:intergenic | 35.0% |
| ! | CTAACTCACCAGAACATTTT+TGG | - | chr8_2:8560101-8560120 | None:intergenic | 35.0% |
| TGTTCTGGTGAGTTAGAAAT+CGG | + | chr8_2:8560105-8560124 | Msa1232240:CDS | 35.0% | |
| TTCTGAGCTGGATTTATTCA+AGG | - | chr8_2:8560196-8560215 | None:intergenic | 35.0% | |
| ! | CTCAGAATGTAGATTTGGTA+TGG | + | chr8_2:8560209-8560228 | Msa1232240:CDS | 35.0% |
| TGGAATGCAAGTTTAGCAAA+AGG | + | chr8_2:8560621-8560640 | Msa1232240:intron | 35.0% | |
| ! | TATTTGAAATGTGTGACAGG+TGG | - | chr8_2:8560692-8560711 | None:intergenic | 35.0% |
| ! | GGATATTTGAAATGTGTGAC+AGG | - | chr8_2:8560695-8560714 | None:intergenic | 35.0% |
| ACTATTCAATTCAAGCAGGA+TGG | + | chr8_2:8560763-8560782 | Msa1232240:intron | 35.0% | |
| !! | TTGTTGGTCTTACAGTTGTA+CGG | - | chr8_2:8560850-8560869 | None:intergenic | 35.0% |
| GTAAGACCAACAATGTTGTA+CGG | + | chr8_2:8560857-8560876 | Msa1232240:intron | 35.0% | |
| TAAGACCAACAATGTTGTAC+GGG | + | chr8_2:8560858-8560877 | Msa1232240:intron | 35.0% | |
| !! | AGTAAAAGATGGTGGAAACT+CGG | + | chr8_2:8560997-8561016 | Msa1232240:intron | 35.0% |
| GCATAGGTTGTTTGAATATG+TGG | + | chr8_2:8561019-8561038 | Msa1232240:intron | 35.0% | |
| AAGGAGAGCAGATAACATAA+AGG | + | chr8_2:8561067-8561086 | Msa1232240:intron | 35.0% | |
| AGGAGAGCAGATAACATAAA+GGG | + | chr8_2:8561068-8561087 | Msa1232240:intron | 35.0% | |
| AAAGGGTAGTAAATCACTAG+AGG | + | chr8_2:8561085-8561104 | Msa1232240:intron | 35.0% | |
| ! | GCGGTTTTCCAAAGATTAAT+TGG | + | chr8_2:8561342-8561361 | Msa1232240:intron | 35.0% |
| GAAATGCAAGACTTCATGTA+AGG | - | chr8_2:8561470-8561489 | None:intergenic | 35.0% | |
| !!! | TTGCACCTGTTTTTAGGATA+TGG | - | chr8_2:8561741-8561760 | None:intergenic | 35.0% |
| AGATTGTAACTTATTGGAGG+AGG | - | chr8_2:8561837-8561856 | None:intergenic | 35.0% | |
| GTCAGATTGTAACTTATTGG+AGG | - | chr8_2:8561840-8561859 | None:intergenic | 35.0% | |
| CTGTCGAGTTTAAAAACTGT+CGG | - | chr8_2:8561881-8561900 | None:intergenic | 35.0% | |
| ! | TGCATTGTTTTCAACATCCT+CGG | - | chr8_2:8561927-8561946 | None:intergenic | 35.0% |
| GATGTTGAAAACAATGCAGT+TGG | + | chr8_2:8561929-8561948 | Msa1232240:CDS | 35.0% | |
| ! | ATTGGAACTTTTATCTGCAG+AGG | - | chr8_2:8562047-8562066 | None:intergenic | 35.0% |
| ! | CAATTGTGGTAATGATGAAC+CGG | - | chr8_2:8562314-8562333 | None:intergenic | 35.0% |
| AGCTTCTTCTGTTGAACAAA+TGG | + | chr8_2:8562375-8562394 | Msa1232240:CDS | 35.0% | |
| GAACAAATGGCACAATCTAA+TGG | + | chr8_2:8562388-8562407 | Msa1232240:CDS | 35.0% | |
| ! | GCAGATGAGTAGTGATTTTT+AGG | - | chr8_2:8562415-8562434 | None:intergenic | 35.0% |
| ! | AGATGGACTTTGGTACAATA+TGG | - | chr8_2:8562452-8562471 | None:intergenic | 35.0% |
| CATTACATGACTTATCTGAG+TGG | - | chr8_2:8562482-8562501 | None:intergenic | 35.0% | |
| CACTCAGATAAGTCATGTAA+TGG | + | chr8_2:8562480-8562499 | Msa1232240:CDS | 35.0% | |
| ! | TCTCTTTTCATTCTCTTGGA+TGG | - | chr8_2:8562574-8562593 | None:intergenic | 35.0% |
| !!! | CTTGCTGATTTTGGATTATG+AGG | - | chr8_2:8562700-8562719 | None:intergenic | 35.0% |
| TAGAGTGTGGGAAAAGGAAT+AGG | + | chr8_2:8558536-8558555 | Msa1232240:CDS | 40.0% | |
| GGGAAAAGGAATAGGATGAA+AGG | + | chr8_2:8558544-8558563 | Msa1232240:CDS | 40.0% | |
| ATGAAAGGGGCAATTGATGA+GGG | + | chr8_2:8558559-8558578 | Msa1232240:CDS | 40.0% | |
| ACATGCAACCTAGGAAACAT+TGG | - | chr8_2:8558598-8558617 | None:intergenic | 40.0% | |
| GCATCTTTAACATGCAACCT+AGG | - | chr8_2:8558607-8558626 | None:intergenic | 40.0% | |
| GTTAAAGATGCAGAGAAAGG+AGG | + | chr8_2:8558616-8558635 | Msa1232240:CDS | 40.0% | |
| !!! | TTATTCCTTGGAGGTGCTTT+TGG | - | chr8_2:8558643-8558662 | None:intergenic | 40.0% |
| AGCACCTCCAAGGAATAAAA+TGG | + | chr8_2:8558645-8558664 | Msa1232240:CDS | 40.0% | |
| !! | AGAGCCATTTTATTCCTTGG+AGG | - | chr8_2:8558652-8558671 | None:intergenic | 40.0% |
| ! | AGTTTTGCATCATCAGGATC+AGG | + | chr8_2:8558700-8558719 | Msa1232240:CDS | 40.0% |
| GAACTACTACATGACTCACA+TGG | - | chr8_2:8558777-8558796 | None:intergenic | 40.0% | |
| !! | GTAGGAGTATCAAGCTTGAT+AGG | + | chr8_2:8558878-8558897 | Msa1232240:intron | 40.0% |
| ! | GCTTGTCCCAAAAGTTTGTT+AGG | + | chr8_2:8559004-8559023 | Msa1232240:intron | 40.0% |
| ! | GTCACAGCCTAACAAACTTT+TGG | - | chr8_2:8559014-8559033 | None:intergenic | 40.0% |
| AACTCTTGTGAGAATCAACC+AGG | + | chr8_2:8559259-8559278 | Msa1232240:intron | 40.0% | |
| GTTTATACTGTGTTGCAGCT+TGG | + | chr8_2:8559385-8559404 | Msa1232240:intron | 40.0% | |
| GATTTCAGTTCTATGGTTCC+AGG | - | chr8_2:8559757-8559776 | None:intergenic | 40.0% | |
| CAATTTAAGGGATCACTGCA+TGG | + | chr8_2:8560053-8560072 | Msa1232240:CDS | 40.0% | |
| GTGAGTTAGAAATCGGTACA+AGG | + | chr8_2:8560112-8560131 | Msa1232240:CDS | 40.0% | |
| TCCAGCTCAGAATGTAGATT+TGG | + | chr8_2:8560204-8560223 | Msa1232240:CDS | 40.0% | |
| ACCAAATCTACATTCTGAGC+TGG | - | chr8_2:8560208-8560227 | None:intergenic | 40.0% | |
| AGTTGAGGGAGGAACTAAAT+GGG | + | chr8_2:8560528-8560547 | Msa1232240:intron | 40.0% | |
| AGACAATTCTTAGACGCGTA+TGG | + | chr8_2:8560566-8560585 | Msa1232240:intron | 40.0% | |
| TACTGTTCTACTATGGACCT+AGG | - | chr8_2:8560716-8560735 | None:intergenic | 40.0% | |
| TTCAATTCAAGCAGGATGGT+AGG | + | chr8_2:8560767-8560786 | Msa1232240:intron | 40.0% | |
| ! | TATCACATGAGGCACTTCTT+TGG | - | chr8_2:8560794-8560813 | None:intergenic | 40.0% |
| ! | GCTACGCTTTATTCTCATGT+TGG | - | chr8_2:8560907-8560926 | None:intergenic | 40.0% |
| CAGTGATGAGATTGTTGTGT+TGG | + | chr8_2:8560926-8560945 | Msa1232240:intron | 40.0% | |
| AGATTGTTGTGTTGGATGTG+TGG | + | chr8_2:8560934-8560953 | Msa1232240:intron | 40.0% | |
| ! | GATGTGTGGACTATCAAGAT+AGG | + | chr8_2:8560948-8560967 | Msa1232240:intron | 40.0% |
| AGAGAGAGAGTAAAAGATGG+TGG | + | chr8_2:8560989-8561008 | Msa1232240:intron | 40.0% | |
| TCTCGTTTGATCCATGTAAC+CGG | + | chr8_2:8561193-8561212 | Msa1232240:intron | 40.0% | |
| ATGCAAGACTTCATGTAAGG+AGG | - | chr8_2:8561467-8561486 | None:intergenic | 40.0% | |
| GAAGAAGATTCTCTGTTGAC+TGG | - | chr8_2:8561609-8561628 | None:intergenic | 40.0% | |
| CAGGTGCAAAGATTAATTGC+TGG | + | chr8_2:8561752-8561771 | Msa1232240:intron | 40.0% | |
| ! | TTGGAGGAGGATGTTTCTAT+TGG | - | chr8_2:8561824-8561843 | None:intergenic | 40.0% |
| TCGAGTTTAAAAACTGTCGG+CGG | - | chr8_2:8561878-8561897 | None:intergenic | 40.0% | |
| ! | ACAGGAACTAACCATTGGTT+TGG | - | chr8_2:8562109-8562128 | None:intergenic | 40.0% |
| ACATGACAGGAACTAACCAT+TGG | - | chr8_2:8562114-8562133 | None:intergenic | 40.0% | |
| GTCCAATGAGCTTCAATCAA+GGG | + | chr8_2:8562224-8562243 | Msa1232240:CDS | 40.0% | |
| ACACATGGTGGTAACAATTG+TGG | - | chr8_2:8562328-8562347 | None:intergenic | 40.0% | |
| ! | ATGAATGATGGAACACATGG+TGG | - | chr8_2:8562340-8562359 | None:intergenic | 40.0% |
| ! | TGCATGAATGATGGAACACA+TGG | - | chr8_2:8562343-8562362 | None:intergenic | 40.0% |
| ! | TGGACATGTTAGATGGACTT+TGG | - | chr8_2:8562462-8562481 | None:intergenic | 40.0% |
| ATCTGAGTGGACATGTTAGA+TGG | - | chr8_2:8562469-8562488 | None:intergenic | 40.0% | |
| ! | TGAACTTCCTTTGTTTCCGT+TGG | + | chr8_2:8562594-8562613 | Msa1232240:CDS | 40.0% |
| TTACTCTTGAGTGATGTTCC+TGG | - | chr8_2:8562666-8562685 | None:intergenic | 40.0% | |
| GATGAAAGGGGCAATTGATG+AGG | + | chr8_2:8558558-8558577 | Msa1232240:CDS | 45.0% | |
| CTCACATGGCTTGATGTTGT+AGG | - | chr8_2:8558763-8558782 | None:intergenic | 45.0% | |
| !!! | ACTTTTGGGACAAGCCCAAA+GGG | - | chr8_2:8558999-8559018 | None:intergenic | 45.0% |
| !!! | AACTTTTGGGACAAGCCCAA+AGG | - | chr8_2:8559000-8559019 | None:intergenic | 45.0% |
| AGTACCTCATAATCGTACCG+CGG | - | chr8_2:8559047-8559066 | None:intergenic | 45.0% | |
| GTCGGACACATAAGCACAAT+TGG | + | chr8_2:8559141-8559160 | Msa1232240:intron | 45.0% | |
| TAAGCACAATTGGCCGAACT+CGG | + | chr8_2:8559151-8559170 | Msa1232240:intron | 45.0% | |
| TGACTTAGAGCACATGACAC+CGG | + | chr8_2:8559519-8559538 | Msa1232240:CDS | 45.0% | |
| AGAAAGGTGATGAACTCACC+TGG | + | chr8_2:8559736-8559755 | Msa1232240:CDS | 45.0% | |
| GAGAGAGAGGAGTAAAGATG+AGG | + | chr8_2:8560149-8560168 | Msa1232240:CDS | 45.0% | |
| TAAGTCCTACGACATCGTCA+GGG | - | chr8_2:8560242-8560261 | None:intergenic | 45.0% | |
| ATAAGTCCTACGACATCGTC+AGG | - | chr8_2:8560243-8560262 | None:intergenic | 45.0% | |
| GACGATGTCGTAGGACTTAT+AGG | + | chr8_2:8560243-8560262 | Msa1232240:CDS | 45.0% | |
| CACTGCTTTGGTACATGAAC+TGG | - | chr8_2:8560482-8560501 | None:intergenic | 45.0% | |
| CTTAAGCAGAGTCACTGCTT+TGG | - | chr8_2:8560494-8560513 | None:intergenic | 45.0% | |
| CTCTGCTTAAGTGTCCTACT+TGG | + | chr8_2:8560503-8560522 | Msa1232240:intron | 45.0% | |
| TGTCCTACTTGGAGAGTTGA+GGG | + | chr8_2:8560514-8560533 | Msa1232240:intron | 45.0% | |
| GAGTTGAGGGAGGAACTAAA+TGG | + | chr8_2:8560527-8560546 | Msa1232240:intron | 45.0% | |
| !! | ACTTTGGTTTGCTTCTACGC+AGG | - | chr8_2:8560598-8560617 | None:intergenic | 45.0% |
| ACCAACAATGTTGTACGGGA+TGG | + | chr8_2:8560862-8560881 | Msa1232240:intron | 45.0% | |
| TCCATCCCGTACAACATTGT+TGG | - | chr8_2:8560866-8560885 | None:intergenic | 45.0% | |
| ACTAAGTAGGACCGGTTACA+TGG | - | chr8_2:8561207-8561226 | None:intergenic | 45.0% | |
| ATGTAACCGGTCCTACTTAG+TGG | + | chr8_2:8561206-8561225 | Msa1232240:intron | 45.0% | |
| TGTAACCGGTCCTACTTAGT+GGG | + | chr8_2:8561207-8561226 | Msa1232240:intron | 45.0% | |
| CTTATCCCACTAAGTAGGAC+CGG | - | chr8_2:8561215-8561234 | None:intergenic | 45.0% | |
| ! | CAAGCCTTATCCCACTAAGT+AGG | - | chr8_2:8561220-8561239 | None:intergenic | 45.0% |
| ! | GAGGAGGATGTTTCTATTGG+TGG | - | chr8_2:8561821-8561840 | None:intergenic | 45.0% |
| TTCAACATCCTCGGAAGTAG+TGG | - | chr8_2:8561918-8561937 | None:intergenic | 45.0% | |
| TATCTGCAGAGGCTAATGCA+AGG | - | chr8_2:8562036-8562055 | None:intergenic | 45.0% | |
| !! | GACAATGCTTGGAGAGTGTT+TGG | - | chr8_2:8562071-8562090 | None:intergenic | 45.0% |
| !! | ACTAACCATTGGTTTGGTGG+TGG | - | chr8_2:8562103-8562122 | None:intergenic | 45.0% |
| !! | GGAACTAACCATTGGTTTGG+TGG | - | chr8_2:8562106-8562125 | None:intergenic | 45.0% |
| GGCATCATGACACCGTTATA+CGG | + | chr8_2:8562193-8562212 | Msa1232240:CDS | 45.0% | |
| ATCATGACACCGTTATACGG+CGG | + | chr8_2:8562196-8562215 | Msa1232240:CDS | 45.0% | |
| GGTCCAATGAGCTTCAATCA+AGG | + | chr8_2:8562223-8562242 | Msa1232240:CDS | 45.0% | |
| CTCCCTTGATTGAAGCTCAT+TGG | - | chr8_2:8562229-8562248 | None:intergenic | 45.0% | |
| ! | AGGGAGCAAAGATGTTGCTT+TGG | + | chr8_2:8562243-8562262 | Msa1232240:CDS | 45.0% |
| CAAAAGATTCGGCTCCTTTC+CGG | + | chr8_2:8562292-8562311 | Msa1232240:CDS | 45.0% | |
| ! | GTGGTAATGATGAACCGGAA+AGG | - | chr8_2:8562309-8562328 | None:intergenic | 45.0% |
| ! | TCTGGTGATGACCAAAACGT+CGG | - | chr8_2:8562622-8562641 | None:intergenic | 45.0% |
| !!! | GCTGACTCACTTGCTGATTT+TGG | - | chr8_2:8562709-8562728 | None:intergenic | 45.0% |
| AGGGGCAATTGATGAGGGAA+AGG | + | chr8_2:8558564-8558583 | Msa1232240:CDS | 50.0% | |
| TACCTCATAATCGTACCGCG+GGG | - | chr8_2:8559045-8559064 | None:intergenic | 50.0% | |
| GTACCTCATAATCGTACCGC+GGG | - | chr8_2:8559046-8559065 | None:intergenic | 50.0% | |
| ACCTAATAGCACCCTGCAGT+CGG | + | chr8_2:8559123-8559142 | Msa1232240:intron | 50.0% | |
| TGCTTATGTGTCCGACTGCA+GGG | - | chr8_2:8559137-8559156 | None:intergenic | 50.0% | |
| ACTGTGTTGCAGCTTGGTTG+TGG | + | chr8_2:8559391-8559410 | Msa1232240:intron | 50.0% | |
| GTCATGACTCGCCATCAACT+TGG | - | chr8_2:8559503-8559522 | None:intergenic | 50.0% | |
| ATCGGTACAAGGTCCTCACA+TGG | + | chr8_2:8560123-8560142 | Msa1232240:CDS | 50.0% | |
| AAGTCCTACGACATCGTCAG+GGG | - | chr8_2:8560241-8560260 | None:intergenic | 50.0% | |
| GTGTCCTACTTGGAGAGTTG+AGG | + | chr8_2:8560513-8560532 | Msa1232240:intron | 50.0% | |
| !! | TTGGTTTGCTTCTACGCAGG+CGG | - | chr8_2:8560595-8560614 | None:intergenic | 50.0% |
| GTGTGACAGGTGGTATGACA+TGG | - | chr8_2:8560682-8560701 | None:intergenic | 50.0% | |
| !! | AGATGGTGGAAACTCGGCAT+AGG | + | chr8_2:8561003-8561022 | Msa1232240:intron | 50.0% |
| CGGTCCTACTTAGTGGGATA+AGG | + | chr8_2:8561213-8561232 | Msa1232240:intron | 50.0% | |
| !! | GCTTGGAGAGTGTTTGGCAT+TGG | - | chr8_2:8562065-8562084 | None:intergenic | 50.0% |
| !! | ATTGGTTTGGTGGTGGTGGA+GGG | - | chr8_2:8562096-8562115 | None:intergenic | 50.0% |
| !! | AACCATTGGTTTGGTGGTGG+TGG | - | chr8_2:8562100-8562119 | None:intergenic | 50.0% |
| CCTTCAGATGGAGACATGAC+AGG | - | chr8_2:8562127-8562146 | None:intergenic | 50.0% | |
| CCTGTCATGTCTCCATCTGA+AGG | + | chr8_2:8562124-8562143 | Msa1232240:CDS | 50.0% | |
| !! | GAGGACCAAAAGCACCTCCA+AGG | + | chr8_2:8558635-8558654 | Msa1232240:CDS | 55.0% |
| CTGTGACTATTTGTCCCCCG+CGG | + | chr8_2:8559027-8559046 | Msa1232240:intron | 55.0% | |
| ACCTCATAATCGTACCGCGG+GGG | - | chr8_2:8559044-8559063 | None:intergenic | 55.0% | |
| !! | TCCGACTGCAGGGTGCTATT+AGG | - | chr8_2:8559127-8559146 | None:intergenic | 55.0% |
| GTGCTTATGTGTCCGACTGC+AGG | - | chr8_2:8559138-8559157 | None:intergenic | 55.0% | |
| CCTCTCTCTCTTGCCATGTG+AGG | - | chr8_2:8560139-8560158 | None:intergenic | 55.0% | |
| CCTCACATGGCAAGAGAGAG+AGG | + | chr8_2:8560136-8560155 | Msa1232240:CDS | 55.0% | |
| ATCTCCCCTGACGATGTCGT+AGG | + | chr8_2:8560234-8560253 | Msa1232240:CDS | 55.0% | |
| CCTCCCTCAACTCTCCAAGT+AGG | - | chr8_2:8560520-8560539 | None:intergenic | 55.0% | |
| CCTACTTGGAGAGTTGAGGG+AGG | + | chr8_2:8560517-8560536 | Msa1232240:intron | 55.0% | |
| ACTCGACAGCAAGTCCGAGA+AGG | + | chr8_2:8561892-8561911 | Msa1232240:CDS | 55.0% | |
| CTCGGAAGTAGTGGCCTTCT+CGG | - | chr8_2:8561909-8561928 | None:intergenic | 55.0% | |
| GGTGGAGGGTAGACAATGCT+TGG | - | chr8_2:8562082-8562101 | None:intergenic | 55.0% | |
| !! | CATTGGTTTGGTGGTGGTGG+AGG | - | chr8_2:8562097-8562116 | None:intergenic | 55.0% |
| CTCCACCACCACCAAACCAA+TGG | + | chr8_2:8562095-8562114 | Msa1232240:CDS | 55.0% | |
| ! | GGAGGGCATGGTCCAATGAT+TGG | - | chr8_2:8562163-8562182 | None:intergenic | 55.0% |
| TGATGCCGCCAGCATTTGGA+GGG | - | chr8_2:8562180-8562199 | None:intergenic | 55.0% | |
| ATGATGCCGCCAGCATTTGG+AGG | - | chr8_2:8562181-8562200 | None:intergenic | 55.0% | |
| GTCATGATGCCGCCAGCATT+TGG | - | chr8_2:8562184-8562203 | None:intergenic | 55.0% | |
| ACACCGTTATACGGCGGTTG+CGG | + | chr8_2:8562202-8562221 | Msa1232240:CDS | 55.0% | |
| !! | GTCGGTGCCAACGGAAACAA+AGG | - | chr8_2:8562604-8562623 | None:intergenic | 55.0% |
| !!! | TTCCGTTGGCACCGACGTTT+TGG | + | chr8_2:8562608-8562627 | Msa1232240:CDS | 55.0% |
| !! | GACCAAAACGTCGGTGCCAA+CGG | - | chr8_2:8562613-8562632 | None:intergenic | 55.0% |
| TCATCACTCGAGTCGCGATC+TGG | - | chr8_2:8562640-8562659 | None:intergenic | 55.0% | |
| CGACTCGAGTGATGAACACC+AGG | + | chr8_2:8562645-8562664 | Msa1232240:CDS | 55.0% | |
| TCCCCCGCGGTACGATTATG+AGG | + | chr8_2:8559040-8559059 | Msa1232240:intron | 60.0% | |
| !! | GTACGGGATGGAGTGTTGCG+CGG | + | chr8_2:8560874-8560893 | Msa1232240:intron | 60.0% |
| CGAGAAGGCCACTACTTCCG+AGG | + | chr8_2:8561907-8561926 | Msa1232240:CDS | 60.0% | |
| GGACCATGCCCTCCAAATGC+TGG | + | chr8_2:8562169-8562188 | Msa1232240:CDS | 60.0% | |
| CCATGCCCTCCAAATGCTGG+CGG | + | chr8_2:8562172-8562191 | Msa1232240:CDS | 60.0% | |
| GGACCGCAACCGCCGTATAA+CGG | - | chr8_2:8562208-8562227 | None:intergenic | 60.0% | |
| CCGCCAGCATTTGGAGGGCA+TGG | - | chr8_2:8562175-8562194 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 8558532 | 8562771 | 8558532 | ID=Msa1232240;Name=Msa1232240 |
| chr8_2 | mRNA | 8558532 | 8562771 | 8558532 | ID=Msa1232240-mRNA-1;Parent=Msa1232240;Name=Msa1232240-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.66|0.25|1|1|1|4|0|738 |
| chr8_2 | exon | 8558532 | 8558777 | 8558532 | ID=Msa1232240-mRNA-1:exon:3339;Parent=Msa1232240-mRNA-1 |
| chr8_2 | exon | 8559403 | 8560304 | 8559403 | ID=Msa1232240-mRNA-1:exon:3340;Parent=Msa1232240-mRNA-1 |
| chr8_2 | exon | 8561610 | 8561661 | 8561610 | ID=Msa1232240-mRNA-1:exon:3341;Parent=Msa1232240-mRNA-1 |
| chr8_2 | exon | 8561755 | 8562771 | 8561755 | ID=Msa1232240-mRNA-1:exon:3342;Parent=Msa1232240-mRNA-1 |
| chr8_2 | CDS | 8558532 | 8558777 | 8558532 | ID=Msa1232240-mRNA-1:cds;Parent=Msa1232240-mRNA-1 |
| chr8_2 | CDS | 8559403 | 8560304 | 8559403 | ID=Msa1232240-mRNA-1:cds;Parent=Msa1232240-mRNA-1 |
| chr8_2 | CDS | 8561610 | 8561661 | 8561610 | ID=Msa1232240-mRNA-1:cds;Parent=Msa1232240-mRNA-1 |
| chr8_2 | CDS | 8561755 | 8562771 | 8561755 | ID=Msa1232240-mRNA-1:cds;Parent=Msa1232240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
