Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1313070 | sp|Q657D6|ELF32_ORYSJ | 34.499 | 429 | 239 | 16 | 324 | 737 | 337 | 738 | 8.34e-50 | 190 |
| Msa1313070 | sp|Q657D6|ELF32_ORYSJ | 52.000 | 75 | 31 | 3 | 15 | 85 | 13 | 86 | 9.08e-13 | 75.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1313070 | A0A072TL88 | 95.473 | 729 | 33 | 0 | 10 | 738 | 1 | 729 | 0.0 | 1418 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0064310 | Msa1313070 | 0.809159 | 2.171802e-50 | -8.615850e-47 |
| Msa0070580 | Msa1313070 | 0.815516 | 8.883909e-52 | -8.615850e-47 |
| Msa0076590 | Msa1313070 | 0.801548 | 8.547408e-49 | -8.615850e-47 |
| Msa0078160 | Msa1313070 | 0.800853 | 1.185952e-48 | -8.615850e-47 |
| Msa0097220 | Msa1313070 | 0.805643 | 1.208778e-49 | -8.615850e-47 |
| Msa0118700 | Msa1313070 | 0.807262 | 5.509170e-50 | -8.615850e-47 |
| Msa0606260 | Msa1313070 | 0.800526 | 1.382975e-48 | -8.615850e-47 |
| Msa0619450 | Msa1313070 | 0.819253 | 1.279922e-52 | -8.615850e-47 |
| Msa0619530 | Msa1313070 | 0.807614 | 4.638068e-50 | -8.615850e-47 |
| Msa0625850 | Msa1313070 | 0.802656 | 5.059209e-49 | -8.615850e-47 |
| Msa0625900 | Msa1313070 | 0.801679 | 8.034434e-49 | -8.615850e-47 |
| Msa0659580 | Msa1313070 | 0.821394 | 4.133632e-53 | -8.615850e-47 |
| Msa0663630 | Msa1313070 | 0.817154 | 3.820012e-52 | -8.615850e-47 |
| Msa0663690 | Msa1313070 | 0.801830 | 7.481268e-49 | -8.615850e-47 |
| Msa0681100 | Msa1313070 | 0.817636 | 2.975077e-52 | -8.615850e-47 |
| Msa0714230 | Msa1313070 | 0.804583 | 2.015290e-49 | -8.615850e-47 |
| Msa0755550 | Msa1313070 | 0.803186 | 3.930685e-49 | -8.615850e-47 |
| Msa0797180 | Msa1313070 | 0.804770 | 1.841579e-49 | -8.615850e-47 |
| Msa0124460 | Msa1313070 | 0.814645 | 1.386433e-51 | -8.615850e-47 |
| Msa0168470 | Msa1313070 | 0.812880 | 3.392423e-51 | -8.615850e-47 |
| Msa0185540 | Msa1313070 | 0.808497 | 3.009019e-50 | -8.615850e-47 |
| Msa0208040 | Msa1313070 | 0.805502 | 1.294402e-49 | -8.615850e-47 |
| Msa1232240 | Msa1313070 | 0.977623 | 3.759485e-144 | -8.615850e-47 |
| Msa1244940 | Msa1313070 | 0.807596 | 4.680147e-50 | -8.615850e-47 |
| Msa1269730 | Msa1313070 | 0.807166 | 5.772158e-50 | -8.615850e-47 |
| Msa1270790 | Msa1313070 | 0.987595 | 7.879769e-171 | -8.615850e-47 |
| Msa1290090 | Msa1313070 | 0.802015 | 6.856283e-49 | -8.615850e-47 |
| Msa1297490 | Msa1313070 | 0.812134 | 4.939463e-51 | -8.615850e-47 |
| Msa1297550 | Msa1313070 | 0.806212 | 9.179419e-50 | -8.615850e-47 |
| Msa1301610 | Msa1313070 | 0.805340 | 1.399811e-49 | -8.615850e-47 |
| Msa1303040 | Msa1313070 | 0.802275 | 6.060602e-49 | -8.615850e-47 |
| Msa1313070 | Msa1348180 | 0.805307 | 1.422023e-49 | -8.615850e-47 |
| Msa1313070 | Msa1363170 | 0.800777 | 1.229095e-48 | -8.615850e-47 |
| Msa1313070 | Msa1375650 | 0.807959 | 3.917832e-50 | -8.615850e-47 |
| Msa1313070 | Msa1387100 | 0.815501 | 8.951946e-52 | -8.615850e-47 |
| Msa1313070 | Msa1398150 | 0.824517 | 7.733747e-54 | -8.615850e-47 |
| Msa1313070 | Msa1427600 | 0.813842 | 2.086048e-51 | -8.615850e-47 |
| Msa1313070 | Msa1439000 | 0.815990 | 6.965250e-52 | -8.615850e-47 |
| Msa1313070 | Msa1453130 | 0.800241 | 1.581003e-48 | -8.615850e-47 |
| Msa0377990 | Msa1313070 | 0.803293 | 3.736233e-49 | -8.615850e-47 |
| Msa0433890 | Msa1313070 | 0.800561 | 1.360067e-48 | -8.615850e-47 |
| Msa0476140 | Msa1313070 | 0.807575 | 4.728271e-50 | -8.615850e-47 |
| Msa0995130 | Msa1313070 | 0.808473 | 3.043746e-50 | -8.615850e-47 |
| Msa1022660 | Msa1313070 | 0.818034 | 2.419228e-52 | -8.615850e-47 |
| Msa1037440 | Msa1313070 | 0.803074 | 4.146904e-49 | -8.615850e-47 |
| Msa1058550 | Msa1313070 | 0.801218 | 9.986076e-49 | -8.615850e-47 |
| Msa1082640 | Msa1313070 | 0.801910 | 7.202812e-49 | -8.615850e-47 |
| Msa1095880 | Msa1313070 | 0.801411 | 9.119068e-49 | -8.615850e-47 |
| Msa0259570 | Msa1313070 | 0.809617 | 1.731665e-50 | -8.615850e-47 |
| Msa0271970 | Msa1313070 | 0.821254 | 4.452572e-53 | -8.615850e-47 |
| Msa0305630 | Msa1313070 | 0.804612 | 1.986774e-49 | -8.615850e-47 |
| Msa0341950 | Msa1313070 | 0.800957 | 1.129472e-48 | -8.615850e-47 |
| Msa1123260 | Msa1313070 | 0.802019 | 6.842985e-49 | -8.615850e-47 |
| Msa1163130 | Msa1313070 | 0.804175 | 2.450303e-49 | -8.615850e-47 |
| Msa1175740 | Msa1313070 | 0.801315 | 9.542304e-49 | -8.615850e-47 |
| Msa1180080 | Msa1313070 | 0.977977 | 7.155844e-145 | -8.615850e-47 |
| Msa1202220 | Msa1313070 | 0.814584 | 1.429906e-51 | -8.615850e-47 |
| Msa1203320 | Msa1313070 | 0.805333 | 1.404371e-49 | -8.615850e-47 |
| Msa1222900 | Msa1313070 | 0.821186 | 4.614644e-53 | -8.615850e-47 |
| Msa0518150 | Msa1313070 | 0.800442 | 1.438685e-48 | -8.615850e-47 |
| Msa0585720 | Msa1313070 | 0.803263 | 3.788962e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1313070 | MtrunA17_Chr8g0341441 | 93.351 | 376 | 22 | 1 | 10 | 382 | 1 | 376 | 0.0 | 716 |
| Msa1313070 | MtrunA17_Chr8g0341451 | 96.848 | 349 | 11 | 0 | 390 | 738 | 1 | 349 | 0.0 | 696 |
| Msa1313070 | MtrunA17_Chr3g0135361 | 39.098 | 399 | 195 | 11 | 358 | 737 | 314 | 683 | 2.68e-62 | 221 |
| Msa1313070 | MtrunA17_Chr3g0135361 | 73.469 | 49 | 13 | 0 | 10 | 58 | 1 | 49 | 7.79e-16 | 81.6 |
| Msa1313070 | MtrunA17_Chr1g0151881 | 35.990 | 414 | 212 | 16 | 345 | 737 | 327 | 708 | 2.05e-45 | 173 |
| Msa1313070 | MtrunA17_Chr1g0151881 | 71.429 | 49 | 11 | 2 | 9 | 56 | 62 | 108 | 1.72e-13 | 74.3 |
| Msa1313070 | MtrunA17_Chr7g0220041 | 72.131 | 61 | 17 | 0 | 445 | 505 | 50 | 110 | 8.65e-20 | 85.5 |
| Msa1313070 | MtrunA17_Chr8g0341431 | 83.721 | 43 | 7 | 0 | 10 | 52 | 1 | 43 | 1.10e-18 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1313070 | AT3G21320.1 | 33.588 | 393 | 178 | 12 | 346 | 737 | 223 | 533 | 1.17e-41 | 160 |
| Msa1313070 | AT2G25930.1 | 41.969 | 193 | 84 | 6 | 358 | 539 | 314 | 489 | 1.90e-32 | 134 |
| Msa1313070 | AT2G25930.1 | 70.370 | 54 | 16 | 0 | 10 | 63 | 1 | 54 | 1.63e-16 | 84.3 |
Find 139 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGACTCACTTGCTGATTT+TGG | 0.081692 | 8_4:+10652026 | None:intergenic |
| AATTATGGCAATCATCATTT+AGG | 0.100912 | 8_4:-10652725 | Msa1313070:CDS |
| TTGCGGACAAAATCAATTTA+AGG | 0.138535 | 8_4:-10654692 | Msa1313070:CDS |
| TAAATAATCGTGTTGAATTT+TGG | 0.172071 | 8_4:+10655178 | None:intergenic |
| GTTAATCTTTCTAGAATTAT+AGG | 0.175238 | 8_4:+10655259 | None:intergenic |
| CAAAAGATTCGGCTCCTTTC+CGG | 0.186551 | 8_4:-10652440 | Msa1313070:CDS |
| AATAATCAGCTTTCAAATTA+TGG | 0.193309 | 8_4:-10652740 | Msa1313070:CDS |
| AAACCTCTTCACTCATTAAA+TGG | 0.208223 | 8_4:-10654885 | Msa1313070:CDS |
| TTATTCCTTGGAGGTGCTTT+TGG | 0.238890 | 8_4:+10656082 | None:intergenic |
| AAAGTCAGATTGTAACTTAT+TGG | 0.265253 | 8_4:+10652892 | None:intergenic |
| TTGTGCTGATTTCAGTTCTA+TGG | 0.271781 | 8_4:+10654971 | None:intergenic |
| CATCTTTATGCTCTTTCATT+AGG | 0.275651 | 8_4:+10654937 | None:intergenic |
| GAACTGAAATCAGCACAATA+TGG | 0.287107 | 8_4:-10654966 | Msa1313070:CDS |
| CTCCCTTGATTGAAGCTCAT+TGG | 0.290810 | 8_4:+10652506 | None:intergenic |
| GACGATGTCGTAGGACTTAT+AGG | 0.304496 | 8_4:-10654489 | Msa1313070:CDS |
| TGAGTTGCATAGACTTATAA+AGG | 0.318584 | 8_4:-10653092 | Msa1313070:intron |
| GATTTCAGTTCTATGGTTCC+AGG | 0.329217 | 8_4:+10654978 | None:intergenic |
| CTCGGAAGTAGTGGCCTTCT+CGG | 0.331350 | 8_4:+10652826 | None:intergenic |
| GTCATGATGCCGCCAGCATT+TGG | 0.332846 | 8_4:+10652551 | None:intergenic |
| ATTATGGCAATCATCATTTA+GGG | 0.333611 | 8_4:-10652724 | Msa1313070:CDS |
| CATTGGTTTGGTGGTGGTGG+AGG | 0.338285 | 8_4:+10652638 | None:intergenic |
| TGCGGACAAAATCAATTTAA+GGG | 0.338609 | 8_4:-10654691 | Msa1313070:CDS |
| TTCCGTTGGCACCGACGTTT+TGG | 0.341515 | 8_4:-10652124 | Msa1313070:CDS |
| TTGTATTGATTTGAATATCT+TGG | 0.349172 | 8_4:+10652001 | None:intergenic |
| TTGGAGGAGGATGTTTCTAT+TGG | 0.366194 | 8_4:+10652911 | None:intergenic |
| GGCATCATGACACCGTTATA+CGG | 0.367402 | 8_4:-10652539 | Msa1313070:CDS |
| AGCACCTCCAAGGAATAAAA+TGG | 0.370824 | 8_4:-10656077 | Msa1313070:CDS |
| GACAATGCTTGGAGAGTGTT+TGG | 0.375029 | 8_4:+10652664 | None:intergenic |
| TCCAGCTCAGAATGTAGATT+TGG | 0.376287 | 8_4:-10654528 | Msa1313070:CDS |
| AATTCTCTGAAAACACTTGA+TGG | 0.378584 | 8_4:-10655140 | Msa1313070:CDS |
| GGAACTGTACAATTTCTTAG+AGG | 0.379244 | 8_4:+10655983 | None:intergenic |
| ATCTTTAATCGATGAGTTTG+AGG | 0.386250 | 8_4:+10654839 | None:intergenic |
| GGAGGGCATGGTCCAATGAT+TGG | 0.389281 | 8_4:+10652572 | None:intergenic |
| TTACTCTTGAGTGATGTTCC+TGG | 0.400202 | 8_4:+10652069 | None:intergenic |
| GAACAAATGGCACAATCTAA+TGG | 0.402223 | 8_4:-10652344 | Msa1313070:CDS |
| AGATGGACTTTGGTACAATA+TGG | 0.411206 | 8_4:+10652283 | None:intergenic |
| TTCTGAGCTGGATTTATTCA+AGG | 0.414643 | 8_4:+10654539 | None:intergenic |
| GATTAACTCAACCAAGTTGA+TGG | 0.415492 | 8_4:-10655243 | Msa1313070:CDS |
| GAGGAGGATGTTTCTATTGG+TGG | 0.417064 | 8_4:+10652914 | None:intergenic |
| TTATCTTCCAATGATTGATA+AGG | 0.419667 | 8_4:+10652215 | None:intergenic |
| AGCTTCTTCTGTTGAACAAA+TGG | 0.420994 | 8_4:-10652357 | Msa1313070:CDS |
| CAAACTCATCGATTAAAGAT+AGG | 0.423296 | 8_4:-10654836 | Msa1313070:CDS |
| AAGTCTAAATTCATTTAGAA+AGG | 0.432222 | 8_4:-10655012 | Msa1313070:CDS |
| CTTGTATATAAGCCAATCAT+TGG | 0.432861 | 8_4:-10652584 | Msa1313070:CDS |
| AACCATTGGTTTGGTGGTGG+TGG | 0.433826 | 8_4:+10652635 | None:intergenic |
| ATAAGTCCTACGACATCGTC+AGG | 0.442802 | 8_4:+10654492 | None:intergenic |
| AGGGAGCAAAGATGTTGCTT+TGG | 0.442973 | 8_4:-10652489 | Msa1313070:CDS |
| CAATTGTGGTAATGATGAAC+CGG | 0.446932 | 8_4:+10652421 | None:intergenic |
| AACTGAAATCAGCACAATAT+GGG | 0.453932 | 8_4:-10654965 | Msa1313070:CDS |
| TAGAGTGTGGGAAAAGGAAT+AGG | 0.454158 | 8_4:-10656186 | Msa1313070:CDS |
| ACAGGAACTAACCATTGGTT+TGG | 0.456496 | 8_4:+10652626 | None:intergenic |
| ATCTGAGTGGACATGTTAGA+TGG | 0.457018 | 8_4:+10652266 | None:intergenic |
| TTGCTTATATTGTTGACAAA+AGG | 0.457324 | 8_4:+10652767 | None:intergenic |
| TGTTCTGGTGAGTTAGAAAT+CGG | 0.463956 | 8_4:-10654627 | Msa1313070:CDS |
| CAGGTGCAAAGATTAATTGC+TGG | 0.467595 | 8_4:-10652980 | Msa1313070:CDS |
| TCATCACTCGAGTCGCGATC+TGG | 0.473501 | 8_4:+10652095 | None:intergenic |
| TGAACTTCCTTTGTTTCCGT+TGG | 0.475130 | 8_4:-10652138 | Msa1313070:CDS |
| GGAACTAACCATTGGTTTGG+TGG | 0.475844 | 8_4:+10652629 | None:intergenic |
| CTCAGAATGTAGATTTGGTA+TGG | 0.477158 | 8_4:-10654523 | Msa1313070:CDS |
| AGATAAGTCCAATGTTTCCT+AGG | 0.478791 | 8_4:-10656135 | Msa1313070:CDS |
| ATTGGTTTGGTGGTGGTGGA+GGG | 0.489254 | 8_4:+10652639 | None:intergenic |
| GGAAAAGGAATAGGATGAAA+GGG | 0.500824 | 8_4:-10656177 | Msa1313070:CDS |
| GGACCATGCCCTCCAAATGC+TGG | 0.503398 | 8_4:-10652563 | Msa1313070:CDS |
| CACTCAGATAAGTCATGTAA+TGG | 0.505804 | 8_4:-10652252 | Msa1313070:CDS |
| TCAAATCAATACAAGAAGAA+AGG | 0.508378 | 8_4:-10651992 | Msa1313070:CDS |
| GACCAAAACGTCGGTGCCAA+CGG | 0.510563 | 8_4:+10652122 | None:intergenic |
| GCTTGGAGAGTGTTTGGCAT+TGG | 0.511051 | 8_4:+10652670 | None:intergenic |
| CCGCCAGCATTTGGAGGGCA+TGG | 0.511195 | 8_4:+10652560 | None:intergenic |
| AGTTGATAGAGTGTGGGAAA+AGG | 0.515998 | 8_4:-10656192 | Msa1313070:CDS |
| ATGAAAGGGGCAATTGATGA+GGG | 0.519543 | 8_4:-10656163 | Msa1313070:CDS |
| AAACCATTTAATGAGTGAAG+AGG | 0.525892 | 8_4:+10654882 | None:intergenic |
| CATGTTAAAGATGCAGAGAA+AGG | 0.525917 | 8_4:-10656109 | Msa1313070:CDS |
| GTCATGACTCGCCATCAACT+TGG | 0.526256 | 8_4:+10655232 | None:intergenic |
| GATGTTGAAAACAATGCAGT+TGG | 0.526264 | 8_4:-10652803 | Msa1313070:CDS |
| CCTTCAGATGGAGACATGAC+AGG | 0.527768 | 8_4:+10652608 | None:intergenic |
| AGATAGAACAGAAGATGCAT+TGG | 0.527977 | 8_4:+10655295 | None:intergenic |
| GTCAGATTGTAACTTATTGG+AGG | 0.529126 | 8_4:+10652895 | None:intergenic |
| ACACCGTTATACGGCGGTTG+CGG | 0.531143 | 8_4:-10652530 | Msa1313070:CDS |
| AGGGGCAATTGATGAGGGAA+AGG | 0.532495 | 8_4:-10656158 | Msa1313070:CDS |
| GGTGGAGGGTAGACAATGCT+TGG | 0.536767 | 8_4:+10652653 | None:intergenic |
| GGACCGCAACCGCCGTATAA+CGG | 0.538073 | 8_4:+10652527 | None:intergenic |
| ACATGCAACCTAGGAAACAT+TGG | 0.538119 | 8_4:+10656127 | None:intergenic |
| GTCGGTGCCAACGGAAACAA+AGG | 0.540047 | 8_4:+10652131 | None:intergenic |
| GTCCAATGAGCTTCAATCAA+GGG | 0.540098 | 8_4:-10652508 | Msa1313070:CDS |
| ATGATGCCGCCAGCATTTGG+AGG | 0.540356 | 8_4:+10652554 | None:intergenic |
| TGAAAACTTGTAGTAAGAGA+TGG | 0.542446 | 8_4:+10652464 | None:intergenic |
| CCTGTCATGTCTCCATCTGA+AGG | 0.543651 | 8_4:-10652608 | Msa1313070:CDS |
| CCTCACATGGCAAGAGAGAG+AGG | 0.543818 | 8_4:-10654596 | Msa1313070:CDS |
| CTCACATGGCTTGATGTTGT+AGG | 0.545092 | 8_4:+10655962 | None:intergenic |
| ACTGTGTTGCAGCTTGGTTG+TGG | 0.548312 | 8_4:-10655341 | Msa1313070:intron |
| GGTCCAATGAGCTTCAATCA+AGG | 0.550030 | 8_4:-10652509 | Msa1313070:CDS |
| ACCAAATCTACATTCTGAGC+TGG | 0.550325 | 8_4:+10654527 | None:intergenic |
| GAGAGAGAGGAGTAAAGATG+AGG | 0.552298 | 8_4:-10654583 | Msa1313070:CDS |
| TTATATTGTTGACAAAAGGA+AGG | 0.553495 | 8_4:+10652771 | None:intergenic |
| ATAGATCTATGCATGAATGA+TGG | 0.554260 | 8_4:+10652383 | None:intergenic |
| AGATTGTAACTTATTGGAGG+AGG | 0.555000 | 8_4:+10652898 | None:intergenic |
| TAAAGAACAAATATCGCTGA+AGG | 0.556742 | 8_4:-10654796 | Msa1313070:CDS |
| TTTATGAGTTGATAGAGTGT+GGG | 0.556933 | 8_4:-10656198 | None:intergenic |
| TTCAACATCCTCGGAAGTAG+TGG | 0.557898 | 8_4:+10652817 | None:intergenic |
| GAACTGTACAATTTCTTAGA+GGG | 0.558318 | 8_4:+10655984 | None:intergenic |
| TATATTGTTGACAAAAGGAA+GGG | 0.559969 | 8_4:+10652772 | None:intergenic |
| GCATCTTTAACATGCAACCT+AGG | 0.561825 | 8_4:+10656118 | None:intergenic |
| TGGACATGTTAGATGGACTT+TGG | 0.571560 | 8_4:+10652273 | None:intergenic |
| GATGAAAGGGGCAATTGATG+AGG | 0.571714 | 8_4:-10656164 | Msa1313070:CDS |
| GATAGCTTGAAAACATTGCA+AGG | 0.578106 | 8_4:-10654750 | Msa1313070:CDS |
| CCTCTCTCTCTTGCCATGTG+AGG | 0.581603 | 8_4:+10654596 | None:intergenic |
| AAAACATTGCAAGGTAGCAA+TGG | 0.584093 | 8_4:-10654741 | Msa1313070:CDS |
| CTCCACCACCACCAAACCAA+TGG | 0.587899 | 8_4:-10652637 | Msa1313070:CDS |
| ACTAACCATTGGTTTGGTGG+TGG | 0.588211 | 8_4:+10652632 | None:intergenic |
| ACATGACAGGAACTAACCAT+TGG | 0.588830 | 8_4:+10652621 | None:intergenic |
| GGGAAAAGGAATAGGATGAA+AGG | 0.589801 | 8_4:-10656178 | Msa1313070:CDS |
| GTGAGTTAGAAATCGGTACA+AGG | 0.592224 | 8_4:-10654620 | Msa1313070:CDS |
| AGAAAGGTGATGAACTCACC+TGG | 0.605551 | 8_4:-10654996 | Msa1313070:CDS |
| CGACTCGAGTGATGAACACC+AGG | 0.605591 | 8_4:-10652087 | Msa1313070:CDS |
| CAATTTAAGGGATCACTGCA+TGG | 0.610874 | 8_4:-10654679 | Msa1313070:CDS |
| TGATGCCGCCAGCATTTGGA+GGG | 0.615550 | 8_4:+10652555 | None:intergenic |
| TTATCTTCAAACAATAGATG+TGG | 0.620025 | 8_4:+10652953 | None:intergenic |
| GAGGACCAAAAGCACCTCCA+AGG | 0.620299 | 8_4:-10656087 | Msa1313070:CDS |
| TAAGTCCTACGACATCGTCA+GGG | 0.620829 | 8_4:+10654493 | None:intergenic |
| GATGATGCAAAACTTTGTGA+AGG | 0.622948 | 8_4:+10656031 | None:intergenic |
| ACTCGACAGCAAGTCCGAGA+AGG | 0.633266 | 8_4:-10652840 | Msa1313070:CDS |
| ATTAAATGGTTTCGATGACA+CGG | 0.641685 | 8_4:-10654871 | Msa1313070:CDS |
| GTTAAAGATGCAGAGAAAGG+AGG | 0.642654 | 8_4:-10656106 | Msa1313070:CDS |
| GTGGTAATGATGAACCGGAA+AGG | 0.644906 | 8_4:+10652426 | None:intergenic |
| CGAGAAGGCCACTACTTCCG+AGG | 0.650322 | 8_4:-10652825 | Msa1313070:CDS |
| ATCGGTACAAGGTCCTCACA+TGG | 0.650514 | 8_4:-10654609 | Msa1313070:CDS |
| TATCTGCAGAGGCTAATGCA+AGG | 0.651421 | 8_4:+10652699 | None:intergenic |
| TTATATACAAGACCTTCAGA+TGG | 0.655581 | 8_4:+10652596 | None:intergenic |
| CCATGCCCTCCAAATGCTGG+CGG | 0.659409 | 8_4:-10652560 | Msa1313070:CDS |
| ACACATGGTGGTAACAATTG+TGG | 0.665840 | 8_4:+10652407 | None:intergenic |
| ATGATGCAAAACTTTGTGAA+GGG | 0.667865 | 8_4:+10656032 | None:intergenic |
| TGACTTAGAGCACATGACAC+CGG | 0.669331 | 8_4:-10655213 | Msa1313070:CDS |
| GAAAAGGAATAGGATGAAAG+GGG | 0.670384 | 8_4:-10656176 | Msa1313070:CDS |
| AAGTCCTACGACATCGTCAG+GGG | 0.680617 | 8_4:+10654494 | None:intergenic |
| TGCATGAATGATGGAACACA+TGG | 0.718592 | 8_4:+10652392 | None:intergenic |
| ATGAATGATGGAACACATGG+TGG | 0.732037 | 8_4:+10652395 | None:intergenic |
| CATTACATGACTTATCTGAG+TGG | 0.751211 | 8_4:+10652253 | None:intergenic |
| TCTGGTGATGACCAAAACGT+CGG | 0.752940 | 8_4:+10652113 | None:intergenic |
| ATCATGACACCGTTATACGG+CGG | 0.764220 | 8_4:-10652536 | Msa1313070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCAATGTATATTTGTT+CGG | - | chr8_4:10652388-10652407 | Msa1313070:CDS | 15.0% |
| !! | TATAAACATCATAACTAAAA+TGG | + | chr8_4:10652813-10652832 | None:intergenic | 15.0% |
| !!! | ACTTTCGTATATAGAATTTT+CGG | - | chr8_4:10652307-10652326 | Msa1313070:CDS | 20.0% |
| !! | TTGTTCTAACAATATTTGTA+TGG | - | chr8_4:10652675-10652694 | Msa1313070:CDS | 20.0% |
| !!! | GTTAATCTTTCTAGAATTAT+AGG | + | chr8_4:10652917-10652936 | None:intergenic | 20.0% |
| !!! | TAAATAATCGTGTTGAATTT+TGG | + | chr8_4:10652998-10653017 | None:intergenic | 20.0% |
| !! | AAGTCTAAATTCATTTAGAA+AGG | - | chr8_4:10653161-10653180 | Msa1313070:intron | 20.0% |
| !!! | TTATAGGTGAAAAACAATTT+TGG | - | chr8_4:10653700-10653719 | Msa1313070:intron | 20.0% |
| !!! | TTTTTCTCAATAGTTTTTCT+AGG | + | chr8_4:10654562-10654581 | None:intergenic | 20.0% |
| !! | GTCTATTAACATATAGTATA+AGG | + | chr8_4:10655111-10655130 | None:intergenic | 20.0% |
| !! | AATAATCAGCTTTCAAATTA+TGG | - | chr8_4:10655433-10655452 | Msa1313070:intron | 20.0% |
| !!! | TTGTATTGATTTGAATATCT+TGG | + | chr8_4:10656175-10656194 | None:intergenic | 20.0% |
| ! | CATACTTATGGTACAAAAAT+TGG | + | chr8_4:10652270-10652289 | None:intergenic | 25.0% |
| ! | GGTTCAAAAGTAAAAAGATA+CGG | + | chr8_4:10652648-10652667 | None:intergenic | 25.0% |
| !!! | TATCTTTTTACTTTTGAACC+AGG | - | chr8_4:10652648-10652667 | Msa1313070:CDS | 25.0% |
| !!! | ATCTTTTTACTTTTGAACCA+GGG | - | chr8_4:10652649-10652668 | Msa1313070:CDS | 25.0% |
| ! | ATAATTCAAACAATGACACT+TGG | - | chr8_4:10652734-10652753 | Msa1313070:CDS | 25.0% |
| ! | ACTACTTAACCTTTATCATT+TGG | - | chr8_4:10652765-10652784 | Msa1313070:CDS | 25.0% |
| !!! | ATTTTGGTAATTTGTTTTGC+CGG | + | chr8_4:10652982-10653001 | None:intergenic | 25.0% |
| ! | ATAGTGCAGATAAATAAGAT+AGG | + | chr8_4:10653864-10653883 | None:intergenic | 25.0% |
| ! | ATCTTCTTTATTATGTGCAT+AGG | - | chr8_4:10653882-10653901 | Msa1313070:intron | 25.0% |
| ! | GCAAAACATTTCTAACTTAA+AGG | - | chr8_4:10654084-10654103 | Msa1313070:intron | 25.0% |
| ! | AAATCTAGAGATTAATGAGT+TGG | - | chr8_4:10654579-10654598 | Msa1313070:CDS | 25.0% |
| !! | AGATCTTTTTGTAAGTTTTG+CGG | - | chr8_4:10654764-10654783 | Msa1313070:CDS | 25.0% |
| ! | TTCATGTACCAATTAATCTT+TGG | + | chr8_4:10654794-10654813 | None:intergenic | 25.0% |
| ! | ATCTAGTTAGATTTATGGTT+GGG | + | chr8_4:10654882-10654901 | None:intergenic | 25.0% |
| !!! | TTTGTATTTTGCTACTTACA+TGG | - | chr8_4:10655002-10655021 | Msa1313070:CDS | 25.0% |
| ! | TTATCTTCAAACAATAGATG+TGG | + | chr8_4:10655223-10655242 | None:intergenic | 25.0% |
| ! | AAAGTCAGATTGTAACTTAT+TGG | + | chr8_4:10655284-10655303 | None:intergenic | 25.0% |
| ! | TATATTGTTGACAAAAGGAA+GGG | + | chr8_4:10655404-10655423 | None:intergenic | 25.0% |
| ! | TTATATTGTTGACAAAAGGA+AGG | + | chr8_4:10655405-10655424 | None:intergenic | 25.0% |
| ! | TTGCTTATATTGTTGACAAA+AGG | + | chr8_4:10655409-10655428 | None:intergenic | 25.0% |
| ! | AATTATGGCAATCATCATTT+AGG | - | chr8_4:10655448-10655467 | Msa1313070:intron | 25.0% |
| ! | ATTATGGCAATCATCATTTA+GGG | - | chr8_4:10655449-10655468 | Msa1313070:intron | 25.0% |
| !! | CAAGTTTTCATCAAAAGATT+CGG | - | chr8_4:10655722-10655741 | Msa1313070:intron | 25.0% |
| !! | TTTTTCACCTTATCAATCAT+TGG | - | chr8_4:10655951-10655970 | Msa1313070:intron | 25.0% |
| ! | TTATCTTCCAATGATTGATA+AGG | + | chr8_4:10655961-10655980 | None:intergenic | 25.0% |
| ! | TCAAATCAATACAAGAAGAA+AGG | - | chr8_4:10656181-10656200 | Msa1313070:CDS | 25.0% |
| ATGATGCAAAACTTTGTGAA+GGG | + | chr8_4:10652144-10652163 | None:intergenic | 30.0% | |
| GAACTGTACAATTTCTTAGA+GGG | + | chr8_4:10652192-10652211 | None:intergenic | 30.0% | |
| AGAGATAAGACTCATACTTA+TGG | + | chr8_4:10652282-10652301 | None:intergenic | 30.0% | |
| ! | TCGTATATAGAATTTTCGGT+AGG | - | chr8_4:10652311-10652330 | Msa1313070:CDS | 30.0% |
| TTAACTGTTATGTACCCTTT+GGG | - | chr8_4:10652423-10652442 | Msa1313070:CDS | 30.0% | |
| TATTGTTAGAACAATAACCC+TGG | + | chr8_4:10652669-10652688 | None:intergenic | 30.0% | |
| GAATTATGTCAAAAAAGTCC+TGG | + | chr8_4:10652721-10652740 | None:intergenic | 30.0% | |
| GTAGAATCACCAAATGATAA+AGG | + | chr8_4:10652777-10652796 | None:intergenic | 30.0% | |
| ! | AATTCTCTGAAAACACTTGA+TGG | - | chr8_4:10653033-10653052 | Msa1313070:intron | 30.0% |
| ! | GAAGATGCTTTTATAACTTC+TGG | - | chr8_4:10653057-10653076 | Msa1313070:intron | 30.0% |
| AACTGAAATCAGCACAATAT+GGG | - | chr8_4:10653208-10653227 | Msa1313070:intron | 30.0% | |
| CATCTTTATGCTCTTTCATT+AGG | + | chr8_4:10653239-10653258 | None:intergenic | 30.0% | |
| AAACCTCTTCACTCATTAAA+TGG | - | chr8_4:10653288-10653307 | Msa1313070:intron | 30.0% | |
| AAACCATTTAATGAGTGAAG+AGG | + | chr8_4:10653294-10653313 | None:intergenic | 30.0% | |
| ATTAAATGGTTTCGATGACA+CGG | - | chr8_4:10653302-10653321 | Msa1313070:intron | 30.0% | |
| ATCTTTAATCGATGAGTTTG+AGG | + | chr8_4:10653337-10653356 | None:intergenic | 30.0% | |
| ! | CAAACTCATCGATTAAAGAT+AGG | - | chr8_4:10653337-10653356 | Msa1313070:intron | 30.0% |
| TAAAGAACAAATATCGCTGA+AGG | - | chr8_4:10653377-10653396 | Msa1313070:intron | 30.0% | |
| TTGCGGACAAAATCAATTTA+AGG | - | chr8_4:10653481-10653500 | Msa1313070:intron | 30.0% | |
| TGCGGACAAAATCAATTTAA+GGG | - | chr8_4:10653482-10653501 | Msa1313070:intron | 30.0% | |
| AGTGATTTCCAAAAATGTTC+TGG | - | chr8_4:10653531-10653550 | Msa1313070:intron | 30.0% | |
| ATTATGTGCATAGGACTTAT+AGG | - | chr8_4:10653891-10653910 | Msa1313070:intron | 30.0% | |
| TAAATGGGAGATTATAGACT+TGG | - | chr8_4:10653984-10654003 | Msa1313070:intron | 30.0% | |
| TAGAAGCAAACCAAAGTATA+TGG | - | chr8_4:10654042-10654061 | Msa1313070:intron | 30.0% | |
| AACTTGCATTCCATATACTT+TGG | + | chr8_4:10654055-10654074 | None:intergenic | 30.0% | |
| TCACACATTTCAAATATCCT+AGG | - | chr8_4:10654137-10654156 | Msa1313070:intron | 30.0% | |
| ! | CATTTTGTACTGTTCTACTA+TGG | + | chr8_4:10654164-10654183 | None:intergenic | 30.0% |
| TAGTAGAACAGTACAAAATG+AGG | - | chr8_4:10654164-10654183 | Msa1313070:intron | 30.0% | |
| GTAAACTATTCAATTCAAGC+AGG | - | chr8_4:10654200-10654219 | Msa1313070:intron | 30.0% | |
| !! | ATGCTACTTTATATCACATG+AGG | + | chr8_4:10654246-10654265 | None:intergenic | 30.0% |
| ATTAGAGAGAGAGTAAAAGA+TGG | - | chr8_4:10654427-10654446 | Msa1313070:intron | 30.0% | |
| GACATGTAGATTCTTTAGTA+AGG | - | chr8_4:10654489-10654508 | Msa1313070:CDS | 30.0% | |
| ATGATATACGACAGAACATT+AGG | - | chr8_4:10654610-10654629 | Msa1313070:CDS | 30.0% | |
| ! | TAGTTATCGCAATATCGATT+TGG | + | chr8_4:10654709-10654728 | None:intergenic | 30.0% |
| TTGATATGTCAACATATACG+TGG | + | chr8_4:10654740-10654759 | None:intergenic | 30.0% | |
| GGACTTAAAGTTAGTGTAAT+AGG | + | chr8_4:10654861-10654880 | None:intergenic | 30.0% | |
| GATCTAGTTAGATTTATGGT+TGG | + | chr8_4:10654883-10654902 | None:intergenic | 30.0% | |
| GGATGATCTAGTTAGATTTA+TGG | + | chr8_4:10654887-10654906 | None:intergenic | 30.0% | |
| TGAGTTGCATAGACTTATAA+AGG | - | chr8_4:10655081-10655100 | Msa1313070:CDS | 30.0% | |
| CTAAACCATATCCTAAAAAC+AGG | - | chr8_4:10655174-10655193 | Msa1313070:CDS | 30.0% | |
| !! | TAATCTTTGCACCTGTTTTT+AGG | + | chr8_4:10655188-10655207 | None:intergenic | 30.0% |
| TTATATACAAGACCTTCAGA+TGG | + | chr8_4:10655580-10655599 | None:intergenic | 30.0% | |
| CTTGTATATAAGCCAATCAT+TGG | - | chr8_4:10655589-10655608 | Msa1313070:intron | 30.0% | |
| TGAAAACTTGTAGTAAGAGA+TGG | + | chr8_4:10655712-10655731 | None:intergenic | 30.0% | |
| ATAGATCTATGCATGAATGA+TGG | + | chr8_4:10655793-10655812 | None:intergenic | 30.0% | |
| ! | TTCATCTCTTTTCATTCTCT+TGG | + | chr8_4:10656019-10656038 | None:intergenic | 30.0% |
| GGAAAAGGAATAGGATGAAA+GGG | - | chr8_4:10651996-10652015 | Msa1313070:CDS | 35.0% | |
| GAAAAGGAATAGGATGAAAG+GGG | - | chr8_4:10651997-10652016 | Msa1313070:CDS | 35.0% | |
| AGATAAGTCCAATGTTTCCT+AGG | - | chr8_4:10652038-10652057 | Msa1313070:CDS | 35.0% | |
| CATGTTAAAGATGCAGAGAA+AGG | - | chr8_4:10652064-10652083 | Msa1313070:CDS | 35.0% | |
| !! | TAGAGAGCCATTTTATTCCT+TGG | + | chr8_4:10652106-10652125 | None:intergenic | 35.0% |
| GATGATGCAAAACTTTGTGA+AGG | + | chr8_4:10652145-10652164 | None:intergenic | 35.0% | |
| ! | TCACAAAGTTTTGCATCATC+AGG | - | chr8_4:10652145-10652164 | Msa1313070:CDS | 35.0% |
| GGAACTGTACAATTTCTTAG+AGG | + | chr8_4:10652193-10652212 | None:intergenic | 35.0% | |
| GTTAACTGTTATGTACCCTT+TGG | - | chr8_4:10652422-10652441 | Msa1313070:CDS | 35.0% | |
| ! | TCACAGCCTAACAAACTTTT+GGG | + | chr8_4:10652454-10652473 | None:intergenic | 35.0% |
| CAATATTTGAACACCGAGTT+CGG | + | chr8_4:10652608-10652627 | None:intergenic | 35.0% | |
| AGATAGAACAGAAGATGCAT+TGG | + | chr8_4:10652881-10652900 | None:intergenic | 35.0% | |
| ! | GATTAACTCAACCAAGTTGA+TGG | - | chr8_4:10652930-10652949 | Msa1313070:CDS | 35.0% |
| !! | TTGTGCTGATTTCAGTTCTA+TGG | + | chr8_4:10653205-10653224 | None:intergenic | 35.0% |
| GAACTGAAATCAGCACAATA+TGG | - | chr8_4:10653207-10653226 | Msa1313070:intron | 35.0% | |
| GATAGCTTGAAAACATTGCA+AGG | - | chr8_4:10653423-10653442 | Msa1313070:intron | 35.0% | |
| AAAACATTGCAAGGTAGCAA+TGG | - | chr8_4:10653432-10653451 | Msa1313070:intron | 35.0% | |
| ! | TGAAGAACATGTAGCTTTTG+CGG | - | chr8_4:10653464-10653483 | Msa1313070:intron | 35.0% |
| !! | TTTTGGAAATCACTCATTGC+TGG | + | chr8_4:10653525-10653544 | None:intergenic | 35.0% |
| ! | CTAACTCACCAGAACATTTT+TGG | + | chr8_4:10653542-10653561 | None:intergenic | 35.0% |
| TGTTCTGGTGAGTTAGAAAT+CGG | - | chr8_4:10653546-10653565 | Msa1313070:intron | 35.0% | |
| TTCTGAGCTGGATTTATTCA+AGG | + | chr8_4:10653637-10653656 | None:intergenic | 35.0% | |
| ! | CTCAGAATGTAGATTTGGTA+TGG | - | chr8_4:10653650-10653669 | Msa1313070:intron | 35.0% |
| TGGAATGCAAGTTTAGCAAA+AGG | - | chr8_4:10654062-10654081 | Msa1313070:intron | 35.0% | |
| ! | TATTTGAAATGTGTGACAGG+TGG | + | chr8_4:10654133-10654152 | None:intergenic | 35.0% |
| ! | GGATATTTGAAATGTGTGAC+AGG | + | chr8_4:10654136-10654155 | None:intergenic | 35.0% |
| ACTATTCAATTCAAGCAGGA+TGG | - | chr8_4:10654204-10654223 | Msa1313070:intron | 35.0% | |
| !! | TTGTTGGTCTTACAGTTGTA+CGG | + | chr8_4:10654291-10654310 | None:intergenic | 35.0% |
| GTAAGACCAACAATGTTGTA+CGG | - | chr8_4:10654298-10654317 | Msa1313070:intron | 35.0% | |
| TAAGACCAACAATGTTGTAC+GGG | - | chr8_4:10654299-10654318 | Msa1313070:intron | 35.0% | |
| !! | AGTAAAAGATGGTGGAAACT+CGG | - | chr8_4:10654438-10654457 | Msa1313070:intron | 35.0% |
| GCATAGGTTGTTTGAATATG+TGG | - | chr8_4:10654460-10654479 | Msa1313070:CDS | 35.0% | |
| AAGGAGAGCAGATAACATAA+AGG | - | chr8_4:10654508-10654527 | Msa1313070:CDS | 35.0% | |
| AGGAGAGCAGATAACATAAA+GGG | - | chr8_4:10654509-10654528 | Msa1313070:CDS | 35.0% | |
| AAAGGGTAGTAAATCACTAG+AGG | - | chr8_4:10654526-10654545 | Msa1313070:CDS | 35.0% | |
| ! | GCGGTTTTCCAAAGATTAAT+TGG | - | chr8_4:10654783-10654802 | Msa1313070:CDS | 35.0% |
| GAAATGCAAGACTTCATGTA+AGG | + | chr8_4:10654911-10654930 | None:intergenic | 35.0% | |
| !!! | TTGCACCTGTTTTTAGGATA+TGG | + | chr8_4:10655182-10655201 | None:intergenic | 35.0% |
| AGATTGTAACTTATTGGAGG+AGG | + | chr8_4:10655278-10655297 | None:intergenic | 35.0% | |
| GTCAGATTGTAACTTATTGG+AGG | + | chr8_4:10655281-10655300 | None:intergenic | 35.0% | |
| CTGTCGAGTTTAAAAACTGT+CGG | + | chr8_4:10655322-10655341 | None:intergenic | 35.0% | |
| ! | TGCATTGTTTTCAACATCCT+CGG | + | chr8_4:10655368-10655387 | None:intergenic | 35.0% |
| GATGTTGAAAACAATGCAGT+TGG | - | chr8_4:10655370-10655389 | Msa1313070:intron | 35.0% | |
| ! | ATTGGAACTTTTATCTGCAG+AGG | + | chr8_4:10655488-10655507 | None:intergenic | 35.0% |
| ! | CAATTGTGGTAATGATGAAC+CGG | + | chr8_4:10655755-10655774 | None:intergenic | 35.0% |
| AGCTTCTTCTGTTGAACAAA+TGG | - | chr8_4:10655816-10655835 | Msa1313070:intron | 35.0% | |
| GAACAAATGGCACAATCTAA+TGG | - | chr8_4:10655829-10655848 | Msa1313070:intron | 35.0% | |
| ! | GCAGATGAGTAGTGATTTTT+AGG | + | chr8_4:10655856-10655875 | None:intergenic | 35.0% |
| ! | AGATGGACTTTGGTACAATA+TGG | + | chr8_4:10655893-10655912 | None:intergenic | 35.0% |
| CATTACATGACTTATCTGAG+TGG | + | chr8_4:10655923-10655942 | None:intergenic | 35.0% | |
| CACTCAGATAAGTCATGTAA+TGG | - | chr8_4:10655921-10655940 | Msa1313070:intron | 35.0% | |
| ! | TCTCTTTTCATTCTCTTGGA+TGG | + | chr8_4:10656015-10656034 | None:intergenic | 35.0% |
| !!! | CTTGCTGATTTTGGATTATG+AGG | + | chr8_4:10656141-10656160 | None:intergenic | 35.0% |
| TAGAGTGTGGGAAAAGGAAT+AGG | - | chr8_4:10651987-10652006 | Msa1313070:CDS | 40.0% | |
| GGGAAAAGGAATAGGATGAA+AGG | - | chr8_4:10651995-10652014 | Msa1313070:CDS | 40.0% | |
| ATGAAAGGGGCAATTGATGA+GGG | - | chr8_4:10652010-10652029 | Msa1313070:CDS | 40.0% | |
| ACATGCAACCTAGGAAACAT+TGG | + | chr8_4:10652049-10652068 | None:intergenic | 40.0% | |
| GCATCTTTAACATGCAACCT+AGG | + | chr8_4:10652058-10652077 | None:intergenic | 40.0% | |
| GTTAAAGATGCAGAGAAAGG+AGG | - | chr8_4:10652067-10652086 | Msa1313070:CDS | 40.0% | |
| !!! | TTATTCCTTGGAGGTGCTTT+TGG | + | chr8_4:10652094-10652113 | None:intergenic | 40.0% |
| AGCACCTCCAAGGAATAAAA+TGG | - | chr8_4:10652096-10652115 | Msa1313070:CDS | 40.0% | |
| !! | AGAGCCATTTTATTCCTTGG+AGG | + | chr8_4:10652103-10652122 | None:intergenic | 40.0% |
| ! | AGTTTTGCATCATCAGGATC+AGG | - | chr8_4:10652151-10652170 | Msa1313070:CDS | 40.0% |
| GAACTACTACATGACTCACA+TGG | + | chr8_4:10652228-10652247 | None:intergenic | 40.0% | |
| !! | GTAGGAGTATCAAGCTTGAT+AGG | - | chr8_4:10652329-10652348 | Msa1313070:CDS | 40.0% |
| ! | GCTTGTCCCAAAAGTTTGTT+AGG | - | chr8_4:10652445-10652464 | Msa1313070:CDS | 40.0% |
| ! | GTCACAGCCTAACAAACTTT+TGG | + | chr8_4:10652455-10652474 | None:intergenic | 40.0% |
| AACTCTTGTGAGAATCAACC+AGG | - | chr8_4:10652700-10652719 | Msa1313070:CDS | 40.0% | |
| GTTTATACTGTGTTGCAGCT+TGG | - | chr8_4:10652826-10652845 | Msa1313070:CDS | 40.0% | |
| GATTTCAGTTCTATGGTTCC+AGG | + | chr8_4:10653198-10653217 | None:intergenic | 40.0% | |
| CAATTTAAGGGATCACTGCA+TGG | - | chr8_4:10653494-10653513 | Msa1313070:intron | 40.0% | |
| GTGAGTTAGAAATCGGTACA+AGG | - | chr8_4:10653553-10653572 | Msa1313070:intron | 40.0% | |
| TCCAGCTCAGAATGTAGATT+TGG | - | chr8_4:10653645-10653664 | Msa1313070:intron | 40.0% | |
| ACCAAATCTACATTCTGAGC+TGG | + | chr8_4:10653649-10653668 | None:intergenic | 40.0% | |
| AGTTGAGGGAGGAACTAAAT+GGG | - | chr8_4:10653969-10653988 | Msa1313070:intron | 40.0% | |
| AGACAATTCTTAGACGCGTA+TGG | - | chr8_4:10654007-10654026 | Msa1313070:intron | 40.0% | |
| TACTGTTCTACTATGGACCT+AGG | + | chr8_4:10654157-10654176 | None:intergenic | 40.0% | |
| TTCAATTCAAGCAGGATGGT+AGG | - | chr8_4:10654208-10654227 | Msa1313070:intron | 40.0% | |
| ! | TATCACATGAGGCACTTCTT+TGG | + | chr8_4:10654235-10654254 | None:intergenic | 40.0% |
| ! | GCTACGCTTTATTCTCATGT+TGG | + | chr8_4:10654348-10654367 | None:intergenic | 40.0% |
| CAGTGATGAGATTGTTGTGT+TGG | - | chr8_4:10654367-10654386 | Msa1313070:intron | 40.0% | |
| AGATTGTTGTGTTGGATGTG+TGG | - | chr8_4:10654375-10654394 | Msa1313070:intron | 40.0% | |
| ! | GATGTGTGGACTATCAAGAT+AGG | - | chr8_4:10654389-10654408 | Msa1313070:intron | 40.0% |
| AGAGAGAGAGTAAAAGATGG+TGG | - | chr8_4:10654430-10654449 | Msa1313070:intron | 40.0% | |
| TCTCGTTTGATCCATGTAAC+CGG | - | chr8_4:10654634-10654653 | Msa1313070:CDS | 40.0% | |
| ATGCAAGACTTCATGTAAGG+AGG | + | chr8_4:10654908-10654927 | None:intergenic | 40.0% | |
| GAAGAAGATTCTCTGTTGAC+TGG | + | chr8_4:10655050-10655069 | None:intergenic | 40.0% | |
| CAGGTGCAAAGATTAATTGC+TGG | - | chr8_4:10655193-10655212 | Msa1313070:CDS | 40.0% | |
| ! | TTGGAGGAGGATGTTTCTAT+TGG | + | chr8_4:10655265-10655284 | None:intergenic | 40.0% |
| TCGAGTTTAAAAACTGTCGG+CGG | + | chr8_4:10655319-10655338 | None:intergenic | 40.0% | |
| ! | ACAGGAACTAACCATTGGTT+TGG | + | chr8_4:10655550-10655569 | None:intergenic | 40.0% |
| ACATGACAGGAACTAACCAT+TGG | + | chr8_4:10655555-10655574 | None:intergenic | 40.0% | |
| GTCCAATGAGCTTCAATCAA+GGG | - | chr8_4:10655665-10655684 | Msa1313070:intron | 40.0% | |
| ACACATGGTGGTAACAATTG+TGG | + | chr8_4:10655769-10655788 | None:intergenic | 40.0% | |
| ! | ATGAATGATGGAACACATGG+TGG | + | chr8_4:10655781-10655800 | None:intergenic | 40.0% |
| ! | TGCATGAATGATGGAACACA+TGG | + | chr8_4:10655784-10655803 | None:intergenic | 40.0% |
| ! | TGGACATGTTAGATGGACTT+TGG | + | chr8_4:10655903-10655922 | None:intergenic | 40.0% |
| ATCTGAGTGGACATGTTAGA+TGG | + | chr8_4:10655910-10655929 | None:intergenic | 40.0% | |
| ! | TGAACTTCCTTTGTTTCCGT+TGG | - | chr8_4:10656035-10656054 | Msa1313070:CDS | 40.0% |
| TTACTCTTGAGTGATGTTCC+TGG | + | chr8_4:10656107-10656126 | None:intergenic | 40.0% | |
| GATGAAAGGGGCAATTGATG+AGG | - | chr8_4:10652009-10652028 | Msa1313070:CDS | 45.0% | |
| CTCACATGGCTTGATGTTGT+AGG | + | chr8_4:10652214-10652233 | None:intergenic | 45.0% | |
| !!! | ACTTTTGGGACAAGCCCAAA+GGG | + | chr8_4:10652440-10652459 | None:intergenic | 45.0% |
| !!! | AACTTTTGGGACAAGCCCAA+AGG | + | chr8_4:10652441-10652460 | None:intergenic | 45.0% |
| AGTACCTCATAATCGTACCG+CGG | + | chr8_4:10652488-10652507 | None:intergenic | 45.0% | |
| GTCGGACACATAAGCACAAT+TGG | - | chr8_4:10652582-10652601 | Msa1313070:CDS | 45.0% | |
| TAAGCACAATTGGCCGAACT+CGG | - | chr8_4:10652592-10652611 | Msa1313070:CDS | 45.0% | |
| TGACTTAGAGCACATGACAC+CGG | - | chr8_4:10652960-10652979 | Msa1313070:CDS | 45.0% | |
| AGAAAGGTGATGAACTCACC+TGG | - | chr8_4:10653177-10653196 | Msa1313070:intron | 45.0% | |
| GAGAGAGAGGAGTAAAGATG+AGG | - | chr8_4:10653590-10653609 | Msa1313070:intron | 45.0% | |
| TAAGTCCTACGACATCGTCA+GGG | + | chr8_4:10653683-10653702 | None:intergenic | 45.0% | |
| ATAAGTCCTACGACATCGTC+AGG | + | chr8_4:10653684-10653703 | None:intergenic | 45.0% | |
| GACGATGTCGTAGGACTTAT+AGG | - | chr8_4:10653684-10653703 | Msa1313070:intron | 45.0% | |
| CACTGCTTTGGTACATGAAC+TGG | + | chr8_4:10653923-10653942 | None:intergenic | 45.0% | |
| CTTAAGCAGAGTCACTGCTT+TGG | + | chr8_4:10653935-10653954 | None:intergenic | 45.0% | |
| CTCTGCTTAAGTGTCCTACT+TGG | - | chr8_4:10653944-10653963 | Msa1313070:intron | 45.0% | |
| TGTCCTACTTGGAGAGTTGA+GGG | - | chr8_4:10653955-10653974 | Msa1313070:intron | 45.0% | |
| GAGTTGAGGGAGGAACTAAA+TGG | - | chr8_4:10653968-10653987 | Msa1313070:intron | 45.0% | |
| !! | ACTTTGGTTTGCTTCTACGC+AGG | + | chr8_4:10654039-10654058 | None:intergenic | 45.0% |
| ACCAACAATGTTGTACGGGA+TGG | - | chr8_4:10654303-10654322 | Msa1313070:intron | 45.0% | |
| TCCATCCCGTACAACATTGT+TGG | + | chr8_4:10654307-10654326 | None:intergenic | 45.0% | |
| ACTAAGTAGGACCGGTTACA+TGG | + | chr8_4:10654648-10654667 | None:intergenic | 45.0% | |
| ATGTAACCGGTCCTACTTAG+TGG | - | chr8_4:10654647-10654666 | Msa1313070:CDS | 45.0% | |
| TGTAACCGGTCCTACTTAGT+GGG | - | chr8_4:10654648-10654667 | Msa1313070:CDS | 45.0% | |
| CTTATCCCACTAAGTAGGAC+CGG | + | chr8_4:10654656-10654675 | None:intergenic | 45.0% | |
| ! | CAAGCCTTATCCCACTAAGT+AGG | + | chr8_4:10654661-10654680 | None:intergenic | 45.0% |
| ! | GAGGAGGATGTTTCTATTGG+TGG | + | chr8_4:10655262-10655281 | None:intergenic | 45.0% |
| TTCAACATCCTCGGAAGTAG+TGG | + | chr8_4:10655359-10655378 | None:intergenic | 45.0% | |
| TATCTGCAGAGGCTAATGCA+AGG | + | chr8_4:10655477-10655496 | None:intergenic | 45.0% | |
| !! | GACAATGCTTGGAGAGTGTT+TGG | + | chr8_4:10655512-10655531 | None:intergenic | 45.0% |
| !! | ACTAACCATTGGTTTGGTGG+TGG | + | chr8_4:10655544-10655563 | None:intergenic | 45.0% |
| !! | GGAACTAACCATTGGTTTGG+TGG | + | chr8_4:10655547-10655566 | None:intergenic | 45.0% |
| GGCATCATGACACCGTTATA+CGG | - | chr8_4:10655634-10655653 | Msa1313070:intron | 45.0% | |
| ATCATGACACCGTTATACGG+CGG | - | chr8_4:10655637-10655656 | Msa1313070:intron | 45.0% | |
| GGTCCAATGAGCTTCAATCA+AGG | - | chr8_4:10655664-10655683 | Msa1313070:intron | 45.0% | |
| CTCCCTTGATTGAAGCTCAT+TGG | + | chr8_4:10655670-10655689 | None:intergenic | 45.0% | |
| ! | AGGGAGCAAAGATGTTGCTT+TGG | - | chr8_4:10655684-10655703 | Msa1313070:intron | 45.0% |
| CAAAAGATTCGGCTCCTTTC+CGG | - | chr8_4:10655733-10655752 | Msa1313070:intron | 45.0% | |
| ! | GTGGTAATGATGAACCGGAA+AGG | + | chr8_4:10655750-10655769 | None:intergenic | 45.0% |
| ! | TCTGGTGATGACCAAAACGT+CGG | + | chr8_4:10656063-10656082 | None:intergenic | 45.0% |
| !!! | GCTGACTCACTTGCTGATTT+TGG | + | chr8_4:10656150-10656169 | None:intergenic | 45.0% |
| AGGGGCAATTGATGAGGGAA+AGG | - | chr8_4:10652015-10652034 | Msa1313070:CDS | 50.0% | |
| TACCTCATAATCGTACCGCG+GGG | + | chr8_4:10652486-10652505 | None:intergenic | 50.0% | |
| GTACCTCATAATCGTACCGC+GGG | + | chr8_4:10652487-10652506 | None:intergenic | 50.0% | |
| ACCTAATAGCACCCTGCAGT+CGG | - | chr8_4:10652564-10652583 | Msa1313070:CDS | 50.0% | |
| TGCTTATGTGTCCGACTGCA+GGG | + | chr8_4:10652578-10652597 | None:intergenic | 50.0% | |
| ACTGTGTTGCAGCTTGGTTG+TGG | - | chr8_4:10652832-10652851 | Msa1313070:CDS | 50.0% | |
| GTCATGACTCGCCATCAACT+TGG | + | chr8_4:10652944-10652963 | None:intergenic | 50.0% | |
| ATCGGTACAAGGTCCTCACA+TGG | - | chr8_4:10653564-10653583 | Msa1313070:intron | 50.0% | |
| AAGTCCTACGACATCGTCAG+GGG | + | chr8_4:10653682-10653701 | None:intergenic | 50.0% | |
| GTGTCCTACTTGGAGAGTTG+AGG | - | chr8_4:10653954-10653973 | Msa1313070:intron | 50.0% | |
| !! | TTGGTTTGCTTCTACGCAGG+CGG | + | chr8_4:10654036-10654055 | None:intergenic | 50.0% |
| GTGTGACAGGTGGTATGACA+TGG | + | chr8_4:10654123-10654142 | None:intergenic | 50.0% | |
| !! | AGATGGTGGAAACTCGGCAT+AGG | - | chr8_4:10654444-10654463 | Msa1313070:intron | 50.0% |
| CGGTCCTACTTAGTGGGATA+AGG | - | chr8_4:10654654-10654673 | Msa1313070:CDS | 50.0% | |
| !! | GCTTGGAGAGTGTTTGGCAT+TGG | + | chr8_4:10655506-10655525 | None:intergenic | 50.0% |
| !! | ATTGGTTTGGTGGTGGTGGA+GGG | + | chr8_4:10655537-10655556 | None:intergenic | 50.0% |
| !! | AACCATTGGTTTGGTGGTGG+TGG | + | chr8_4:10655541-10655560 | None:intergenic | 50.0% |
| CCTTCAGATGGAGACATGAC+AGG | + | chr8_4:10655568-10655587 | None:intergenic | 50.0% | |
| CCTGTCATGTCTCCATCTGA+AGG | - | chr8_4:10655565-10655584 | Msa1313070:intron | 50.0% | |
| !! | GAGGACCAAAAGCACCTCCA+AGG | - | chr8_4:10652086-10652105 | Msa1313070:CDS | 55.0% |
| CTGTGACTATTTGTCCCCCG+CGG | - | chr8_4:10652468-10652487 | Msa1313070:CDS | 55.0% | |
| ACCTCATAATCGTACCGCGG+GGG | + | chr8_4:10652485-10652504 | None:intergenic | 55.0% | |
| !! | TCCGACTGCAGGGTGCTATT+AGG | + | chr8_4:10652568-10652587 | None:intergenic | 55.0% |
| GTGCTTATGTGTCCGACTGC+AGG | + | chr8_4:10652579-10652598 | None:intergenic | 55.0% | |
| CCTCTCTCTCTTGCCATGTG+AGG | + | chr8_4:10653580-10653599 | None:intergenic | 55.0% | |
| CCTCACATGGCAAGAGAGAG+AGG | - | chr8_4:10653577-10653596 | Msa1313070:intron | 55.0% | |
| ATCTCCCCTGACGATGTCGT+AGG | - | chr8_4:10653675-10653694 | Msa1313070:intron | 55.0% | |
| CCTCCCTCAACTCTCCAAGT+AGG | + | chr8_4:10653961-10653980 | None:intergenic | 55.0% | |
| CCTACTTGGAGAGTTGAGGG+AGG | - | chr8_4:10653958-10653977 | Msa1313070:intron | 55.0% | |
| ACTCGACAGCAAGTCCGAGA+AGG | - | chr8_4:10655333-10655352 | Msa1313070:intron | 55.0% | |
| CTCGGAAGTAGTGGCCTTCT+CGG | + | chr8_4:10655350-10655369 | None:intergenic | 55.0% | |
| GGTGGAGGGTAGACAATGCT+TGG | + | chr8_4:10655523-10655542 | None:intergenic | 55.0% | |
| !! | CATTGGTTTGGTGGTGGTGG+AGG | + | chr8_4:10655538-10655557 | None:intergenic | 55.0% |
| CTCCACCACCACCAAACCAA+TGG | - | chr8_4:10655536-10655555 | Msa1313070:intron | 55.0% | |
| ! | GGAGGGCATGGTCCAATGAT+TGG | + | chr8_4:10655604-10655623 | None:intergenic | 55.0% |
| TGATGCCGCCAGCATTTGGA+GGG | + | chr8_4:10655621-10655640 | None:intergenic | 55.0% | |
| ATGATGCCGCCAGCATTTGG+AGG | + | chr8_4:10655622-10655641 | None:intergenic | 55.0% | |
| GTCATGATGCCGCCAGCATT+TGG | + | chr8_4:10655625-10655644 | None:intergenic | 55.0% | |
| ACACCGTTATACGGCGGTTG+CGG | - | chr8_4:10655643-10655662 | Msa1313070:intron | 55.0% | |
| !! | GTCGGTGCCAACGGAAACAA+AGG | + | chr8_4:10656045-10656064 | None:intergenic | 55.0% |
| !!! | TTCCGTTGGCACCGACGTTT+TGG | - | chr8_4:10656049-10656068 | Msa1313070:CDS | 55.0% |
| !! | GACCAAAACGTCGGTGCCAA+CGG | + | chr8_4:10656054-10656073 | None:intergenic | 55.0% |
| TCATCACTCGAGTCGCGATC+TGG | + | chr8_4:10656081-10656100 | None:intergenic | 55.0% | |
| CGACTCGAGTGATGAACACC+AGG | - | chr8_4:10656086-10656105 | Msa1313070:CDS | 55.0% | |
| TCCCCCGCGGTACGATTATG+AGG | - | chr8_4:10652481-10652500 | Msa1313070:CDS | 60.0% | |
| !! | GTACGGGATGGAGTGTTGCG+CGG | - | chr8_4:10654315-10654334 | Msa1313070:intron | 60.0% |
| CGAGAAGGCCACTACTTCCG+AGG | - | chr8_4:10655348-10655367 | Msa1313070:intron | 60.0% | |
| GGACCATGCCCTCCAAATGC+TGG | - | chr8_4:10655610-10655629 | Msa1313070:intron | 60.0% | |
| CCATGCCCTCCAAATGCTGG+CGG | - | chr8_4:10655613-10655632 | Msa1313070:intron | 60.0% | |
| GGACCGCAACCGCCGTATAA+CGG | + | chr8_4:10655649-10655668 | None:intergenic | 60.0% | |
| CCGCCAGCATTTGGAGGGCA+TGG | + | chr8_4:10655616-10655635 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 10651983 | 10656212 | 10651983 | ID=Msa1313070;Name=Msa1313070 |
| chr8_4 | mRNA | 10651983 | 10656212 | 10651983 | ID=Msa1313070-mRNA-1;Parent=Msa1313070;Name=Msa1313070-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.66|0.25|1|1|1|4|0|738 |
| chr8_4 | exon | 10655967 | 10656212 | 10655967 | ID=Msa1313070-mRNA-1:exon:3988;Parent=Msa1313070-mRNA-1 |
| chr8_4 | exon | 10654450 | 10655351 | 10654450 | ID=Msa1313070-mRNA-1:exon:3987;Parent=Msa1313070-mRNA-1 |
| chr8_4 | exon | 10653093 | 10653144 | 10653093 | ID=Msa1313070-mRNA-1:exon:3986;Parent=Msa1313070-mRNA-1 |
| chr8_4 | exon | 10651983 | 10652999 | 10651983 | ID=Msa1313070-mRNA-1:exon:3985;Parent=Msa1313070-mRNA-1 |
| chr8_4 | CDS | 10655967 | 10656212 | 10655967 | ID=Msa1313070-mRNA-1:cds;Parent=Msa1313070-mRNA-1 |
| chr8_4 | CDS | 10654450 | 10655351 | 10654450 | ID=Msa1313070-mRNA-1:cds;Parent=Msa1313070-mRNA-1 |
| chr8_4 | CDS | 10653093 | 10653144 | 10653093 | ID=Msa1313070-mRNA-1:cds;Parent=Msa1313070-mRNA-1 |
| chr8_4 | CDS | 10651983 | 10652999 | 10651983 | ID=Msa1313070-mRNA-1:cds;Parent=Msa1313070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
