Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1180080 | sp|Q657D6|ELF32_ORYSJ | 34.499 | 429 | 239 | 16 | 324 | 737 | 337 | 738 | 8.34e-50 | 190 |
| Msa1180080 | sp|Q657D6|ELF32_ORYSJ | 52.000 | 75 | 31 | 3 | 15 | 85 | 13 | 86 | 9.08e-13 | 75.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1180080 | A0A072TL88 | 95.473 | 729 | 33 | 0 | 10 | 738 | 1 | 729 | 0.0 | 1418 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0070580 | Msa1180080 | 0.809016 | 2.330863e-50 | -8.615850e-47 |
| Msa0076590 | Msa1180080 | 0.800828 | 1.200304e-48 | -8.615850e-47 |
| Msa0097220 | Msa1180080 | 0.810450 | 1.146043e-50 | -8.615850e-47 |
| Msa0619450 | Msa1180080 | 0.817884 | 2.616429e-52 | -8.615850e-47 |
| Msa0619530 | Msa1180080 | 0.804811 | 1.806140e-49 | -8.615850e-47 |
| Msa0659580 | Msa1180080 | 0.820266 | 7.509956e-53 | -8.615850e-47 |
| Msa0681100 | Msa1180080 | 0.815391 | 9.467501e-52 | -8.615850e-47 |
| Msa0714230 | Msa1180080 | 0.804999 | 1.649153e-49 | -8.615850e-47 |
| Msa0784780 | Msa1180080 | 0.804144 | 2.486842e-49 | -8.615850e-47 |
| Msa0808500 | Msa1180080 | 0.804331 | 2.273597e-49 | -8.615850e-47 |
| Msa0124460 | Msa1180080 | 0.803917 | 2.772765e-49 | -8.615850e-47 |
| Msa0168470 | Msa1180080 | 0.807395 | 5.162335e-50 | -8.615850e-47 |
| Msa0185540 | Msa1180080 | 0.811630 | 6.359257e-51 | -8.615850e-47 |
| Msa0476140 | Msa1180080 | 0.807284 | 5.449280e-50 | -8.615850e-47 |
| Msa0995130 | Msa1180080 | 0.810042 | 1.402802e-50 | -8.615850e-47 |
| Msa1058550 | Msa1180080 | 0.804784 | 1.829487e-49 | -8.615850e-47 |
| Msa1082640 | Msa1180080 | 0.818454 | 1.944346e-52 | -8.615850e-47 |
| Msa0271970 | Msa1180080 | 0.811841 | 5.722782e-51 | -8.615850e-47 |
| Msa0355990 | Msa1180080 | 0.803887 | 2.812360e-49 | -8.615850e-47 |
| Msa1163130 | Msa1180080 | 0.803520 | 3.352723e-49 | -8.615850e-47 |
| Msa1169250 | Msa1180080 | 0.800515 | 1.390271e-48 | -8.615850e-47 |
| Msa1180080 | Msa1202220 | 0.819135 | 1.361710e-52 | -8.615850e-47 |
| Msa1180080 | Msa1222900 | 0.811436 | 7.009529e-51 | -8.615850e-47 |
| Msa1180080 | Msa1232240 | 0.962561 | 5.035951e-121 | -8.615850e-47 |
| Msa1180080 | Msa1244940 | 0.803141 | 4.015698e-49 | -8.615850e-47 |
| Msa1180080 | Msa1270790 | 0.985558 | 6.085184e-164 | -8.615850e-47 |
| Msa1180080 | Msa1297490 | 0.804038 | 2.616256e-49 | -8.615850e-47 |
| Msa1180080 | Msa1297550 | 0.801665 | 8.090777e-49 | -8.615850e-47 |
| Msa1180080 | Msa1313070 | 0.977977 | 7.155844e-145 | -8.615850e-47 |
| Msa1180080 | Msa1375650 | 0.800966 | 1.124435e-48 | -8.615850e-47 |
| Msa1180080 | Msa1387100 | 0.805700 | 1.176069e-49 | -8.615850e-47 |
| Msa1180080 | Msa1398150 | 0.812754 | 3.615362e-51 | -8.615850e-47 |
| Msa1180080 | Msa1427600 | 0.811327 | 7.398673e-51 | -8.615850e-47 |
| Msa1180080 | Msa1439000 | 0.810088 | 1.371392e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1180080 | MtrunA17_Chr8g0341441 | 93.351 | 376 | 22 | 1 | 10 | 382 | 1 | 376 | 0.0 | 716 |
| Msa1180080 | MtrunA17_Chr8g0341451 | 96.848 | 349 | 11 | 0 | 390 | 738 | 1 | 349 | 0.0 | 696 |
| Msa1180080 | MtrunA17_Chr3g0135361 | 39.098 | 399 | 195 | 11 | 358 | 737 | 314 | 683 | 2.68e-62 | 221 |
| Msa1180080 | MtrunA17_Chr3g0135361 | 73.469 | 49 | 13 | 0 | 10 | 58 | 1 | 49 | 7.79e-16 | 81.6 |
| Msa1180080 | MtrunA17_Chr1g0151881 | 35.990 | 414 | 212 | 16 | 345 | 737 | 327 | 708 | 2.05e-45 | 173 |
| Msa1180080 | MtrunA17_Chr1g0151881 | 71.429 | 49 | 11 | 2 | 9 | 56 | 62 | 108 | 1.72e-13 | 74.3 |
| Msa1180080 | MtrunA17_Chr7g0220041 | 72.131 | 61 | 17 | 0 | 445 | 505 | 50 | 110 | 8.65e-20 | 85.5 |
| Msa1180080 | MtrunA17_Chr8g0341431 | 83.721 | 43 | 7 | 0 | 10 | 52 | 1 | 43 | 1.10e-18 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1180080 | AT3G21320.1 | 33.588 | 393 | 178 | 12 | 346 | 737 | 223 | 533 | 1.17e-41 | 160 |
| Msa1180080 | AT2G25930.1 | 41.969 | 193 | 84 | 6 | 358 | 539 | 314 | 489 | 1.90e-32 | 134 |
| Msa1180080 | AT2G25930.1 | 70.370 | 54 | 16 | 0 | 10 | 63 | 1 | 54 | 1.63e-16 | 84.3 |
Find 139 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGACTCACTTGCTGATTT+TGG | 0.081692 | 8_1:+13808108 | None:intergenic |
| AATTATGGCAATCATCATTT+AGG | 0.100912 | 8_1:-13808807 | Msa1180080:CDS |
| TTGCGGACAAAATCAATTTA+AGG | 0.138535 | 8_1:-13810774 | Msa1180080:CDS |
| TAAATAATCGTGTTGAATTT+TGG | 0.172071 | 8_1:+13811260 | None:intergenic |
| GTTAATCTTTCTAGAATTAT+AGG | 0.175238 | 8_1:+13811341 | None:intergenic |
| CAAAAGATTCGGCTCCTTTC+CGG | 0.186551 | 8_1:-13808522 | Msa1180080:CDS |
| AATAATCAGCTTTCAAATTA+TGG | 0.193309 | 8_1:-13808822 | Msa1180080:CDS |
| AAACCTCTTCACTCATTAAA+TGG | 0.208223 | 8_1:-13810967 | Msa1180080:CDS |
| TTATTCCTTGGAGGTGCTTT+TGG | 0.238890 | 8_1:+13812164 | None:intergenic |
| AAAGTCAGATTGTAACTTAT+TGG | 0.265253 | 8_1:+13808974 | None:intergenic |
| TTGTGCTGATTTCAGTTCTA+TGG | 0.271781 | 8_1:+13811053 | None:intergenic |
| CATCTTTATGCTCTTTCATT+AGG | 0.275651 | 8_1:+13811019 | None:intergenic |
| GAACTGAAATCAGCACAATA+TGG | 0.287107 | 8_1:-13811048 | Msa1180080:CDS |
| CTCCCTTGATTGAAGCTCAT+TGG | 0.290810 | 8_1:+13808588 | None:intergenic |
| GACGATGTCGTAGGACTTAT+AGG | 0.304496 | 8_1:-13810571 | Msa1180080:CDS |
| TGAGTTGCATAGACTTATAA+AGG | 0.318584 | 8_1:-13809174 | Msa1180080:intron |
| GATTTCAGTTCTATGGTTCC+AGG | 0.329217 | 8_1:+13811060 | None:intergenic |
| CTCGGAAGTAGTGGCCTTCT+CGG | 0.331350 | 8_1:+13808908 | None:intergenic |
| GTCATGATGCCGCCAGCATT+TGG | 0.332846 | 8_1:+13808633 | None:intergenic |
| ATTATGGCAATCATCATTTA+GGG | 0.333611 | 8_1:-13808806 | Msa1180080:CDS |
| CATTGGTTTGGTGGTGGTGG+AGG | 0.338285 | 8_1:+13808720 | None:intergenic |
| TGCGGACAAAATCAATTTAA+GGG | 0.338609 | 8_1:-13810773 | Msa1180080:CDS |
| TTCCGTTGGCACCGACGTTT+TGG | 0.341515 | 8_1:-13808206 | Msa1180080:CDS |
| TTGTATTGATTTGAATATCT+TGG | 0.349172 | 8_1:+13808083 | None:intergenic |
| TTGGAGGAGGATGTTTCTAT+TGG | 0.366194 | 8_1:+13808993 | None:intergenic |
| GGCATCATGACACCGTTATA+CGG | 0.367402 | 8_1:-13808621 | Msa1180080:CDS |
| AGCACCTCCAAGGAATAAAA+TGG | 0.370824 | 8_1:-13812159 | Msa1180080:CDS |
| GACAATGCTTGGAGAGTGTT+TGG | 0.375029 | 8_1:+13808746 | None:intergenic |
| TCCAGCTCAGAATGTAGATT+TGG | 0.376287 | 8_1:-13810610 | Msa1180080:CDS |
| AATTCTCTGAAAACACTTGA+TGG | 0.378584 | 8_1:-13811222 | Msa1180080:CDS |
| GGAACTGTACAATTTCTTAG+AGG | 0.379244 | 8_1:+13812065 | None:intergenic |
| ATCTTTAATCGATGAGTTTG+AGG | 0.386250 | 8_1:+13810921 | None:intergenic |
| GGAGGGCATGGTCCAATGAT+TGG | 0.389281 | 8_1:+13808654 | None:intergenic |
| TTACTCTTGAGTGATGTTCC+TGG | 0.400202 | 8_1:+13808151 | None:intergenic |
| GAACAAATGGCACAATCTAA+TGG | 0.402223 | 8_1:-13808426 | Msa1180080:CDS |
| AGATGGACTTTGGTACAATA+TGG | 0.411206 | 8_1:+13808365 | None:intergenic |
| TTCTGAGCTGGATTTATTCA+AGG | 0.414643 | 8_1:+13810621 | None:intergenic |
| GATTAACTCAACCAAGTTGA+TGG | 0.415492 | 8_1:-13811325 | Msa1180080:CDS |
| GAGGAGGATGTTTCTATTGG+TGG | 0.417064 | 8_1:+13808996 | None:intergenic |
| TTATCTTCCAATGATTGATA+AGG | 0.419667 | 8_1:+13808297 | None:intergenic |
| AGCTTCTTCTGTTGAACAAA+TGG | 0.420994 | 8_1:-13808439 | Msa1180080:CDS |
| CAAACTCATCGATTAAAGAT+AGG | 0.423296 | 8_1:-13810918 | Msa1180080:CDS |
| AAGTCTAAATTCATTTAGAA+AGG | 0.432222 | 8_1:-13811094 | Msa1180080:CDS |
| CTTGTATATAAGCCAATCAT+TGG | 0.432861 | 8_1:-13808666 | Msa1180080:CDS |
| AACCATTGGTTTGGTGGTGG+TGG | 0.433826 | 8_1:+13808717 | None:intergenic |
| ATAAGTCCTACGACATCGTC+AGG | 0.442802 | 8_1:+13810574 | None:intergenic |
| AGGGAGCAAAGATGTTGCTT+TGG | 0.442973 | 8_1:-13808571 | Msa1180080:CDS |
| CAATTGTGGTAATGATGAAC+CGG | 0.446932 | 8_1:+13808503 | None:intergenic |
| AACTGAAATCAGCACAATAT+GGG | 0.453932 | 8_1:-13811047 | Msa1180080:CDS |
| TAGAGTGTGGGAAAAGGAAT+AGG | 0.454158 | 8_1:-13812268 | Msa1180080:CDS |
| ACAGGAACTAACCATTGGTT+TGG | 0.456496 | 8_1:+13808708 | None:intergenic |
| ATCTGAGTGGACATGTTAGA+TGG | 0.457018 | 8_1:+13808348 | None:intergenic |
| TTGCTTATATTGTTGACAAA+AGG | 0.457324 | 8_1:+13808849 | None:intergenic |
| TGTTCTGGTGAGTTAGAAAT+CGG | 0.463956 | 8_1:-13810709 | Msa1180080:CDS |
| CAGGTGCAAAGATTAATTGC+TGG | 0.467595 | 8_1:-13809062 | Msa1180080:CDS |
| TCATCACTCGAGTCGCGATC+TGG | 0.473501 | 8_1:+13808177 | None:intergenic |
| TGAACTTCCTTTGTTTCCGT+TGG | 0.475130 | 8_1:-13808220 | Msa1180080:CDS |
| GGAACTAACCATTGGTTTGG+TGG | 0.475844 | 8_1:+13808711 | None:intergenic |
| CTCAGAATGTAGATTTGGTA+TGG | 0.477158 | 8_1:-13810605 | Msa1180080:CDS |
| AGATAAGTCCAATGTTTCCT+AGG | 0.478791 | 8_1:-13812217 | Msa1180080:CDS |
| ATTGGTTTGGTGGTGGTGGA+GGG | 0.489254 | 8_1:+13808721 | None:intergenic |
| GGAAAAGGAATAGGATGAAA+GGG | 0.500824 | 8_1:-13812259 | Msa1180080:CDS |
| GGACCATGCCCTCCAAATGC+TGG | 0.503398 | 8_1:-13808645 | Msa1180080:CDS |
| CACTCAGATAAGTCATGTAA+TGG | 0.505804 | 8_1:-13808334 | Msa1180080:CDS |
| TCAAATCAATACAAGAAGAA+AGG | 0.508378 | 8_1:-13808074 | Msa1180080:CDS |
| GACCAAAACGTCGGTGCCAA+CGG | 0.510563 | 8_1:+13808204 | None:intergenic |
| GCTTGGAGAGTGTTTGGCAT+TGG | 0.511051 | 8_1:+13808752 | None:intergenic |
| CCGCCAGCATTTGGAGGGCA+TGG | 0.511195 | 8_1:+13808642 | None:intergenic |
| AGTTGATAGAGTGTGGGAAA+AGG | 0.515998 | 8_1:-13812274 | Msa1180080:CDS |
| ATGAAAGGGGCAATTGATGA+GGG | 0.519543 | 8_1:-13812245 | Msa1180080:CDS |
| AAACCATTTAATGAGTGAAG+AGG | 0.525892 | 8_1:+13810964 | None:intergenic |
| CATGTTAAAGATGCAGAGAA+AGG | 0.525917 | 8_1:-13812191 | Msa1180080:CDS |
| GTCATGACTCGCCATCAACT+TGG | 0.526256 | 8_1:+13811314 | None:intergenic |
| GATGTTGAAAACAATGCAGT+TGG | 0.526264 | 8_1:-13808885 | Msa1180080:CDS |
| CCTTCAGATGGAGACATGAC+AGG | 0.527768 | 8_1:+13808690 | None:intergenic |
| AGATAGAACAGAAGATGCAT+TGG | 0.527977 | 8_1:+13811377 | None:intergenic |
| GTCAGATTGTAACTTATTGG+AGG | 0.529126 | 8_1:+13808977 | None:intergenic |
| ACACCGTTATACGGCGGTTG+CGG | 0.531143 | 8_1:-13808612 | Msa1180080:CDS |
| AGGGGCAATTGATGAGGGAA+AGG | 0.532495 | 8_1:-13812240 | Msa1180080:CDS |
| GGTGGAGGGTAGACAATGCT+TGG | 0.536767 | 8_1:+13808735 | None:intergenic |
| GGACCGCAACCGCCGTATAA+CGG | 0.538073 | 8_1:+13808609 | None:intergenic |
| ACATGCAACCTAGGAAACAT+TGG | 0.538119 | 8_1:+13812209 | None:intergenic |
| GTCGGTGCCAACGGAAACAA+AGG | 0.540047 | 8_1:+13808213 | None:intergenic |
| GTCCAATGAGCTTCAATCAA+GGG | 0.540098 | 8_1:-13808590 | Msa1180080:CDS |
| ATGATGCCGCCAGCATTTGG+AGG | 0.540356 | 8_1:+13808636 | None:intergenic |
| TGAAAACTTGTAGTAAGAGA+TGG | 0.542446 | 8_1:+13808546 | None:intergenic |
| CCTGTCATGTCTCCATCTGA+AGG | 0.543651 | 8_1:-13808690 | Msa1180080:CDS |
| CCTCACATGGCAAGAGAGAG+AGG | 0.543818 | 8_1:-13810678 | Msa1180080:CDS |
| CTCACATGGCTTGATGTTGT+AGG | 0.545092 | 8_1:+13812044 | None:intergenic |
| ACTGTGTTGCAGCTTGGTTG+TGG | 0.548312 | 8_1:-13811423 | Msa1180080:intron |
| GGTCCAATGAGCTTCAATCA+AGG | 0.550030 | 8_1:-13808591 | Msa1180080:CDS |
| ACCAAATCTACATTCTGAGC+TGG | 0.550325 | 8_1:+13810609 | None:intergenic |
| GAGAGAGAGGAGTAAAGATG+AGG | 0.552298 | 8_1:-13810665 | Msa1180080:CDS |
| TTATATTGTTGACAAAAGGA+AGG | 0.553495 | 8_1:+13808853 | None:intergenic |
| ATAGATCTATGCATGAATGA+TGG | 0.554260 | 8_1:+13808465 | None:intergenic |
| AGATTGTAACTTATTGGAGG+AGG | 0.555000 | 8_1:+13808980 | None:intergenic |
| TAAAGAACAAATATCGCTGA+AGG | 0.556742 | 8_1:-13810878 | Msa1180080:CDS |
| TTTATGAGTTGATAGAGTGT+GGG | 0.556933 | 8_1:-13812280 | None:intergenic |
| TTCAACATCCTCGGAAGTAG+TGG | 0.557898 | 8_1:+13808899 | None:intergenic |
| GAACTGTACAATTTCTTAGA+GGG | 0.558318 | 8_1:+13812066 | None:intergenic |
| TATATTGTTGACAAAAGGAA+GGG | 0.559969 | 8_1:+13808854 | None:intergenic |
| GCATCTTTAACATGCAACCT+AGG | 0.561825 | 8_1:+13812200 | None:intergenic |
| TGGACATGTTAGATGGACTT+TGG | 0.571560 | 8_1:+13808355 | None:intergenic |
| GATGAAAGGGGCAATTGATG+AGG | 0.571714 | 8_1:-13812246 | Msa1180080:CDS |
| GATAGCTTGAAAACATTGCA+AGG | 0.578106 | 8_1:-13810832 | Msa1180080:CDS |
| CCTCTCTCTCTTGCCATGTG+AGG | 0.581603 | 8_1:+13810678 | None:intergenic |
| AAAACATTGCAAGGTAGCAA+TGG | 0.584093 | 8_1:-13810823 | Msa1180080:CDS |
| CTCCACCACCACCAAACCAA+TGG | 0.587899 | 8_1:-13808719 | Msa1180080:CDS |
| ACTAACCATTGGTTTGGTGG+TGG | 0.588211 | 8_1:+13808714 | None:intergenic |
| ACATGACAGGAACTAACCAT+TGG | 0.588830 | 8_1:+13808703 | None:intergenic |
| GGGAAAAGGAATAGGATGAA+AGG | 0.589801 | 8_1:-13812260 | Msa1180080:CDS |
| GTGAGTTAGAAATCGGTACA+AGG | 0.592224 | 8_1:-13810702 | Msa1180080:CDS |
| AGAAAGGTGATGAACTCACC+TGG | 0.605551 | 8_1:-13811078 | Msa1180080:CDS |
| CGACTCGAGTGATGAACACC+AGG | 0.605591 | 8_1:-13808169 | Msa1180080:CDS |
| CAATTTAAGGGATCACTGCA+TGG | 0.610874 | 8_1:-13810761 | Msa1180080:CDS |
| TGATGCCGCCAGCATTTGGA+GGG | 0.615550 | 8_1:+13808637 | None:intergenic |
| TTATCTTCAAACAATAGATG+TGG | 0.620025 | 8_1:+13809035 | None:intergenic |
| GAGGACCAAAAGCACCTCCA+AGG | 0.620299 | 8_1:-13812169 | Msa1180080:CDS |
| TAAGTCCTACGACATCGTCA+GGG | 0.620829 | 8_1:+13810575 | None:intergenic |
| GATGATGCAAAACTTTGTGA+AGG | 0.622948 | 8_1:+13812113 | None:intergenic |
| ACTCGACAGCAAGTCCGAGA+AGG | 0.633266 | 8_1:-13808922 | Msa1180080:CDS |
| ATTAAATGGTTTCGATGACA+CGG | 0.641685 | 8_1:-13810953 | Msa1180080:CDS |
| GTTAAAGATGCAGAGAAAGG+AGG | 0.642654 | 8_1:-13812188 | Msa1180080:CDS |
| GTGGTAATGATGAACCGGAA+AGG | 0.644906 | 8_1:+13808508 | None:intergenic |
| CGAGAAGGCCACTACTTCCG+AGG | 0.650322 | 8_1:-13808907 | Msa1180080:CDS |
| ATCGGTACAAGGTCCTCACA+TGG | 0.650514 | 8_1:-13810691 | Msa1180080:CDS |
| TATCTGCAGAGGCTAATGCA+AGG | 0.651421 | 8_1:+13808781 | None:intergenic |
| TTATATACAAGACCTTCAGA+TGG | 0.655581 | 8_1:+13808678 | None:intergenic |
| CCATGCCCTCCAAATGCTGG+CGG | 0.659409 | 8_1:-13808642 | Msa1180080:CDS |
| ACACATGGTGGTAACAATTG+TGG | 0.665840 | 8_1:+13808489 | None:intergenic |
| ATGATGCAAAACTTTGTGAA+GGG | 0.667865 | 8_1:+13812114 | None:intergenic |
| TGACTTAGAGCACATGACAC+CGG | 0.669331 | 8_1:-13811295 | Msa1180080:CDS |
| GAAAAGGAATAGGATGAAAG+GGG | 0.670384 | 8_1:-13812258 | Msa1180080:CDS |
| AAGTCCTACGACATCGTCAG+GGG | 0.680617 | 8_1:+13810576 | None:intergenic |
| TGCATGAATGATGGAACACA+TGG | 0.718592 | 8_1:+13808474 | None:intergenic |
| ATGAATGATGGAACACATGG+TGG | 0.732037 | 8_1:+13808477 | None:intergenic |
| CATTACATGACTTATCTGAG+TGG | 0.751211 | 8_1:+13808335 | None:intergenic |
| TCTGGTGATGACCAAAACGT+CGG | 0.752940 | 8_1:+13808195 | None:intergenic |
| ATCATGACACCGTTATACGG+CGG | 0.764220 | 8_1:-13808618 | Msa1180080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCAATGTATATTTGTT+CGG | - | chr8_1:13808470-13808489 | Msa1180080:CDS | 15.0% |
| !! | TATAAACATCATAACTAAAA+TGG | + | chr8_1:13808895-13808914 | None:intergenic | 15.0% |
| !!! | ACTTTCGTATATAGAATTTT+CGG | - | chr8_1:13808389-13808408 | Msa1180080:CDS | 20.0% |
| !! | TTGTTCTAACAATATTTGTA+TGG | - | chr8_1:13808757-13808776 | Msa1180080:CDS | 20.0% |
| !!! | GTTAATCTTTCTAGAATTAT+AGG | + | chr8_1:13808999-13809018 | None:intergenic | 20.0% |
| !!! | TAAATAATCGTGTTGAATTT+TGG | + | chr8_1:13809080-13809099 | None:intergenic | 20.0% |
| !! | AAGTCTAAATTCATTTAGAA+AGG | - | chr8_1:13809243-13809262 | Msa1180080:intron | 20.0% |
| !!! | TTATAGGTGAAAAACAATTT+TGG | - | chr8_1:13809782-13809801 | Msa1180080:intron | 20.0% |
| !!! | TTTTTCTCAATAGTTTTTCT+AGG | + | chr8_1:13810644-13810663 | None:intergenic | 20.0% |
| !!! | AGATTTTTTTGTAAGTTTTG+TGG | - | chr8_1:13810846-13810865 | Msa1180080:CDS | 20.0% |
| !! | AATAATCAGCTTTCAAATTA+TGG | - | chr8_1:13811515-13811534 | Msa1180080:intron | 20.0% |
| !!! | TTGTATTGATTTGAATATCT+TGG | + | chr8_1:13812257-13812276 | None:intergenic | 20.0% |
| ! | CATACTTATGGTACAAAAAT+TGG | + | chr8_1:13808352-13808371 | None:intergenic | 25.0% |
| ! | GGTTCAAAAGTAAAAAGATA+CGG | + | chr8_1:13808730-13808749 | None:intergenic | 25.0% |
| !!! | TATCTTTTTACTTTTGAACC+AGG | - | chr8_1:13808730-13808749 | Msa1180080:CDS | 25.0% |
| !!! | ATCTTTTTACTTTTGAACCA+GGG | - | chr8_1:13808731-13808750 | Msa1180080:CDS | 25.0% |
| ! | ATAATTCAAACAATGACACT+TGG | - | chr8_1:13808816-13808835 | Msa1180080:CDS | 25.0% |
| ! | ACTACTTAACCTTTATCATT+TGG | - | chr8_1:13808847-13808866 | Msa1180080:CDS | 25.0% |
| !!! | ATTTTGGTAATTTGTTTTGC+CGG | + | chr8_1:13809064-13809083 | None:intergenic | 25.0% |
| ! | ATAGTGCAGATAAATAAGAT+AGG | + | chr8_1:13809946-13809965 | None:intergenic | 25.0% |
| ! | ATCTTCTTTATTATGTGCAT+AGG | - | chr8_1:13809964-13809983 | Msa1180080:intron | 25.0% |
| ! | GCAAAACATTTCTAACTTAA+AGG | - | chr8_1:13810166-13810185 | Msa1180080:intron | 25.0% |
| ! | AAATCTAGAGATTAATGAGT+TGG | - | chr8_1:13810661-13810680 | Msa1180080:CDS | 25.0% |
| ! | TTCATGTACCAATTAATCTT+TGG | + | chr8_1:13810876-13810895 | None:intergenic | 25.0% |
| ! | ATCTAGTTAGATTTATGGTT+GGG | + | chr8_1:13810964-13810983 | None:intergenic | 25.0% |
| !!! | TTTGTATTTTGCTACTTACA+TGG | - | chr8_1:13811084-13811103 | Msa1180080:CDS | 25.0% |
| ! | GTCTATTAACATATAGTATG+AGG | + | chr8_1:13811193-13811212 | None:intergenic | 25.0% |
| ! | TTATCTTCAAACAATAGATG+TGG | + | chr8_1:13811305-13811324 | None:intergenic | 25.0% |
| ! | AAAGTCAGATTGTAACTTAT+TGG | + | chr8_1:13811366-13811385 | None:intergenic | 25.0% |
| ! | TATATTGTTGACAAAAGGAA+GGG | + | chr8_1:13811486-13811505 | None:intergenic | 25.0% |
| ! | TTATATTGTTGACAAAAGGA+AGG | + | chr8_1:13811487-13811506 | None:intergenic | 25.0% |
| ! | TTGCTTATATTGTTGACAAA+AGG | + | chr8_1:13811491-13811510 | None:intergenic | 25.0% |
| ! | AATTATGGCAATCATCATTT+AGG | - | chr8_1:13811530-13811549 | Msa1180080:intron | 25.0% |
| ! | ATTATGGCAATCATCATTTA+GGG | - | chr8_1:13811531-13811550 | Msa1180080:intron | 25.0% |
| !! | CAAGTTTTCATCAAAAGATT+CGG | - | chr8_1:13811804-13811823 | Msa1180080:intron | 25.0% |
| !! | TTTTTCACCTTATCAATCAT+TGG | - | chr8_1:13812033-13812052 | Msa1180080:intron | 25.0% |
| ! | TTATCTTCCAATGATTGATA+AGG | + | chr8_1:13812043-13812062 | None:intergenic | 25.0% |
| ! | TCAAATCAATACAAGAAGAA+AGG | - | chr8_1:13812263-13812282 | Msa1180080:CDS | 25.0% |
| ATGATGCAAAACTTTGTGAA+GGG | + | chr8_1:13808226-13808245 | None:intergenic | 30.0% | |
| GAACTGTACAATTTCTTAGA+GGG | + | chr8_1:13808274-13808293 | None:intergenic | 30.0% | |
| AGAGATAAGACTCATACTTA+TGG | + | chr8_1:13808364-13808383 | None:intergenic | 30.0% | |
| ! | TCGTATATAGAATTTTCGGT+AGG | - | chr8_1:13808393-13808412 | Msa1180080:CDS | 30.0% |
| TTAACTGTTATGTACCCTTT+GGG | - | chr8_1:13808505-13808524 | Msa1180080:CDS | 30.0% | |
| TATTGTTAGAACAATAACCC+TGG | + | chr8_1:13808751-13808770 | None:intergenic | 30.0% | |
| GAATTATGTCAAAAAAGTCC+TGG | + | chr8_1:13808803-13808822 | None:intergenic | 30.0% | |
| GTAGAATCACCAAATGATAA+AGG | + | chr8_1:13808859-13808878 | None:intergenic | 30.0% | |
| ! | AATTCTCTGAAAACACTTGA+TGG | - | chr8_1:13809115-13809134 | Msa1180080:intron | 30.0% |
| ! | GAAGATGCTTTTATAACTTC+TGG | - | chr8_1:13809139-13809158 | Msa1180080:intron | 30.0% |
| AACTGAAATCAGCACAATAT+GGG | - | chr8_1:13809290-13809309 | Msa1180080:intron | 30.0% | |
| CATCTTTATGCTCTTTCATT+AGG | + | chr8_1:13809321-13809340 | None:intergenic | 30.0% | |
| AAACCTCTTCACTCATTAAA+TGG | - | chr8_1:13809370-13809389 | Msa1180080:intron | 30.0% | |
| AAACCATTTAATGAGTGAAG+AGG | + | chr8_1:13809376-13809395 | None:intergenic | 30.0% | |
| ATTAAATGGTTTCGATGACA+CGG | - | chr8_1:13809384-13809403 | Msa1180080:intron | 30.0% | |
| ATCTTTAATCGATGAGTTTG+AGG | + | chr8_1:13809419-13809438 | None:intergenic | 30.0% | |
| ! | CAAACTCATCGATTAAAGAT+AGG | - | chr8_1:13809419-13809438 | Msa1180080:intron | 30.0% |
| TAAAGAACAAATATCGCTGA+AGG | - | chr8_1:13809459-13809478 | Msa1180080:intron | 30.0% | |
| TTGCGGACAAAATCAATTTA+AGG | - | chr8_1:13809563-13809582 | Msa1180080:intron | 30.0% | |
| TGCGGACAAAATCAATTTAA+GGG | - | chr8_1:13809564-13809583 | Msa1180080:intron | 30.0% | |
| AGTGATTTCCAAAAATGTTC+TGG | - | chr8_1:13809613-13809632 | Msa1180080:intron | 30.0% | |
| ATTATGTGCATAGGACTTAT+AGG | - | chr8_1:13809973-13809992 | Msa1180080:intron | 30.0% | |
| TAAATGGGAGATTATAGACT+TGG | - | chr8_1:13810066-13810085 | Msa1180080:intron | 30.0% | |
| TAGAAGCAAACCAAAGTATA+TGG | - | chr8_1:13810124-13810143 | Msa1180080:intron | 30.0% | |
| AACTTGCATTCCATATACTT+TGG | + | chr8_1:13810137-13810156 | None:intergenic | 30.0% | |
| TCACACATTTCAAATATCCT+AGG | - | chr8_1:13810219-13810238 | Msa1180080:intron | 30.0% | |
| ! | CATTTTGTACTGTTCTACTA+TGG | + | chr8_1:13810246-13810265 | None:intergenic | 30.0% |
| TAGTAGAACAGTACAAAATG+AGG | - | chr8_1:13810246-13810265 | Msa1180080:intron | 30.0% | |
| GTAAACTATTCAATTCAAGC+AGG | - | chr8_1:13810282-13810301 | Msa1180080:intron | 30.0% | |
| !! | ATGCTACTTTATATCACATG+AGG | + | chr8_1:13810328-13810347 | None:intergenic | 30.0% |
| ATTAGAGAGAGAGTAAAAGA+TGG | - | chr8_1:13810509-13810528 | Msa1180080:intron | 30.0% | |
| GACATGTAGATTCTTTAGTA+AGG | - | chr8_1:13810571-13810590 | Msa1180080:CDS | 30.0% | |
| ATGATATACGACAGAACATT+AGG | - | chr8_1:13810692-13810711 | Msa1180080:CDS | 30.0% | |
| ! | TAGTTATCGCAATATCGATT+TGG | + | chr8_1:13810791-13810810 | None:intergenic | 30.0% |
| TTGATATGTCAACATATACG+TGG | + | chr8_1:13810822-13810841 | None:intergenic | 30.0% | |
| ! | GTGGTTTTCCAAAGATTAAT+TGG | - | chr8_1:13810865-13810884 | Msa1180080:CDS | 30.0% |
| GGACTTAAAGTTAGTGTAAT+AGG | + | chr8_1:13810943-13810962 | None:intergenic | 30.0% | |
| GATCTAGTTAGATTTATGGT+TGG | + | chr8_1:13810965-13810984 | None:intergenic | 30.0% | |
| GGATGATCTAGTTAGATTTA+TGG | + | chr8_1:13810969-13810988 | None:intergenic | 30.0% | |
| TGAGTTGCATAGACTTATAA+AGG | - | chr8_1:13811163-13811182 | Msa1180080:CDS | 30.0% | |
| CTAAACCATATCCTAAAAAC+AGG | - | chr8_1:13811256-13811275 | Msa1180080:CDS | 30.0% | |
| !! | TAATCTTTGCACCTGTTTTT+AGG | + | chr8_1:13811270-13811289 | None:intergenic | 30.0% |
| TTATATACAAGACCTTCAGA+TGG | + | chr8_1:13811662-13811681 | None:intergenic | 30.0% | |
| CTTGTATATAAGCCAATCAT+TGG | - | chr8_1:13811671-13811690 | Msa1180080:intron | 30.0% | |
| TGAAAACTTGTAGTAAGAGA+TGG | + | chr8_1:13811794-13811813 | None:intergenic | 30.0% | |
| ATAGATCTATGCATGAATGA+TGG | + | chr8_1:13811875-13811894 | None:intergenic | 30.0% | |
| ! | TTCATCTCTTTTCATTCTCT+TGG | + | chr8_1:13812101-13812120 | None:intergenic | 30.0% |
| GGAAAAGGAATAGGATGAAA+GGG | - | chr8_1:13808078-13808097 | Msa1180080:CDS | 35.0% | |
| GAAAAGGAATAGGATGAAAG+GGG | - | chr8_1:13808079-13808098 | Msa1180080:CDS | 35.0% | |
| AGATAAGTCCAATGTTTCCT+AGG | - | chr8_1:13808120-13808139 | Msa1180080:CDS | 35.0% | |
| CATGTTAAAGATGCAGAGAA+AGG | - | chr8_1:13808146-13808165 | Msa1180080:CDS | 35.0% | |
| !! | TAGAGAGCCATTTTATTCCT+TGG | + | chr8_1:13808188-13808207 | None:intergenic | 35.0% |
| GATGATGCAAAACTTTGTGA+AGG | + | chr8_1:13808227-13808246 | None:intergenic | 35.0% | |
| ! | TCACAAAGTTTTGCATCATC+AGG | - | chr8_1:13808227-13808246 | Msa1180080:CDS | 35.0% |
| GGAACTGTACAATTTCTTAG+AGG | + | chr8_1:13808275-13808294 | None:intergenic | 35.0% | |
| GTTAACTGTTATGTACCCTT+TGG | - | chr8_1:13808504-13808523 | Msa1180080:CDS | 35.0% | |
| ! | TCACAGCCTAACAAACTTTT+GGG | + | chr8_1:13808536-13808555 | None:intergenic | 35.0% |
| CAATATTTGAACACCGAGTT+CGG | + | chr8_1:13808690-13808709 | None:intergenic | 35.0% | |
| AGATAGAACAGAAGATGCAT+TGG | + | chr8_1:13808963-13808982 | None:intergenic | 35.0% | |
| ! | GATTAACTCAACCAAGTTGA+TGG | - | chr8_1:13809012-13809031 | Msa1180080:CDS | 35.0% |
| !! | TTGTGCTGATTTCAGTTCTA+TGG | + | chr8_1:13809287-13809306 | None:intergenic | 35.0% |
| GAACTGAAATCAGCACAATA+TGG | - | chr8_1:13809289-13809308 | Msa1180080:intron | 35.0% | |
| GATAGCTTGAAAACATTGCA+AGG | - | chr8_1:13809505-13809524 | Msa1180080:intron | 35.0% | |
| AAAACATTGCAAGGTAGCAA+TGG | - | chr8_1:13809514-13809533 | Msa1180080:intron | 35.0% | |
| ! | TGAAGAACATGTAGCTTTTG+CGG | - | chr8_1:13809546-13809565 | Msa1180080:intron | 35.0% |
| !! | TTTTGGAAATCACTCATTGC+TGG | + | chr8_1:13809607-13809626 | None:intergenic | 35.0% |
| ! | CTAACTCACCAGAACATTTT+TGG | + | chr8_1:13809624-13809643 | None:intergenic | 35.0% |
| TGTTCTGGTGAGTTAGAAAT+CGG | - | chr8_1:13809628-13809647 | Msa1180080:intron | 35.0% | |
| TTCTGAGCTGGATTTATTCA+AGG | + | chr8_1:13809719-13809738 | None:intergenic | 35.0% | |
| ! | CTCAGAATGTAGATTTGGTA+TGG | - | chr8_1:13809732-13809751 | Msa1180080:intron | 35.0% |
| TGGAATGCAAGTTTAGCAAA+AGG | - | chr8_1:13810144-13810163 | Msa1180080:intron | 35.0% | |
| ! | TATTTGAAATGTGTGACAGG+TGG | + | chr8_1:13810215-13810234 | None:intergenic | 35.0% |
| ! | GGATATTTGAAATGTGTGAC+AGG | + | chr8_1:13810218-13810237 | None:intergenic | 35.0% |
| ACTATTCAATTCAAGCAGGA+TGG | - | chr8_1:13810286-13810305 | Msa1180080:intron | 35.0% | |
| GTAAGACCAACAATGTTGTA+CGG | - | chr8_1:13810380-13810399 | Msa1180080:intron | 35.0% | |
| TAAGACCAACAATGTTGTAC+GGG | - | chr8_1:13810381-13810400 | Msa1180080:intron | 35.0% | |
| !! | AGTAAAAGATGGTGGAAACT+CGG | - | chr8_1:13810520-13810539 | Msa1180080:intron | 35.0% |
| GCATAGGTTGTTTGAATATG+TGG | - | chr8_1:13810542-13810561 | Msa1180080:CDS | 35.0% | |
| AAGGAGAGCAGATAAGATAA+AGG | - | chr8_1:13810590-13810609 | Msa1180080:CDS | 35.0% | |
| AGGAGAGCAGATAAGATAAA+GGG | - | chr8_1:13810591-13810610 | Msa1180080:CDS | 35.0% | |
| GAAATGCAAGACTTCATGTA+AGG | + | chr8_1:13810993-13811012 | None:intergenic | 35.0% | |
| !!! | TTGCACCTGTTTTTAGGATA+TGG | + | chr8_1:13811264-13811283 | None:intergenic | 35.0% |
| AGATTGTAACTTATTGGAGG+AGG | + | chr8_1:13811360-13811379 | None:intergenic | 35.0% | |
| GTCAGATTGTAACTTATTGG+AGG | + | chr8_1:13811363-13811382 | None:intergenic | 35.0% | |
| CTGTCGAGTTTAAAAACTGT+CGG | + | chr8_1:13811404-13811423 | None:intergenic | 35.0% | |
| ! | TGCATTGTTTTCAACATCCT+CGG | + | chr8_1:13811450-13811469 | None:intergenic | 35.0% |
| GATGTTGAAAACAATGCAGT+TGG | - | chr8_1:13811452-13811471 | Msa1180080:intron | 35.0% | |
| ! | ATTGGAACTTTTATCTGCAG+AGG | + | chr8_1:13811570-13811589 | None:intergenic | 35.0% |
| ! | CAATTGTGGTAATGATGAAC+CGG | + | chr8_1:13811837-13811856 | None:intergenic | 35.0% |
| AGCTTCTTCTGTTGAACAAA+TGG | - | chr8_1:13811898-13811917 | Msa1180080:intron | 35.0% | |
| GAACAAATGGCACAATCTAA+TGG | - | chr8_1:13811911-13811930 | Msa1180080:intron | 35.0% | |
| ! | GCAGATGAGTAGTGATTTTT+AGG | + | chr8_1:13811938-13811957 | None:intergenic | 35.0% |
| ! | AGATGGACTTTGGTACAATA+TGG | + | chr8_1:13811975-13811994 | None:intergenic | 35.0% |
| CATTACATGACTTATCTGAG+TGG | + | chr8_1:13812005-13812024 | None:intergenic | 35.0% | |
| CACTCAGATAAGTCATGTAA+TGG | - | chr8_1:13812003-13812022 | Msa1180080:intron | 35.0% | |
| ! | TCTCTTTTCATTCTCTTGGA+TGG | + | chr8_1:13812097-13812116 | None:intergenic | 35.0% |
| !!! | CTTGCTGATTTTGGATTATG+AGG | + | chr8_1:13812223-13812242 | None:intergenic | 35.0% |
| TAGAGTGTGGGAAAAGGAAT+AGG | - | chr8_1:13808069-13808088 | Msa1180080:CDS | 40.0% | |
| GGGAAAAGGAATAGGATGAA+AGG | - | chr8_1:13808077-13808096 | Msa1180080:CDS | 40.0% | |
| ATGAAAGGGGCAATTGATGA+GGG | - | chr8_1:13808092-13808111 | Msa1180080:CDS | 40.0% | |
| ACATGCAACCTAGGAAACAT+TGG | + | chr8_1:13808131-13808150 | None:intergenic | 40.0% | |
| GCATCTTTAACATGCAACCT+AGG | + | chr8_1:13808140-13808159 | None:intergenic | 40.0% | |
| GTTAAAGATGCAGAGAAAGG+AGG | - | chr8_1:13808149-13808168 | Msa1180080:CDS | 40.0% | |
| !!! | TTATTCCTTGGAGGTGCTTT+TGG | + | chr8_1:13808176-13808195 | None:intergenic | 40.0% |
| AGCACCTCCAAGGAATAAAA+TGG | - | chr8_1:13808178-13808197 | Msa1180080:CDS | 40.0% | |
| !! | AGAGCCATTTTATTCCTTGG+AGG | + | chr8_1:13808185-13808204 | None:intergenic | 40.0% |
| ! | AGTTTTGCATCATCAGGATC+AGG | - | chr8_1:13808233-13808252 | Msa1180080:CDS | 40.0% |
| GAACTACTACATGACTCACA+TGG | + | chr8_1:13808310-13808329 | None:intergenic | 40.0% | |
| !! | GTAGGAGTATCAAGCTTGAT+AGG | - | chr8_1:13808411-13808430 | Msa1180080:CDS | 40.0% |
| ! | GCTTGTCCCAAAAGTTTGTT+AGG | - | chr8_1:13808527-13808546 | Msa1180080:CDS | 40.0% |
| ! | GTCACAGCCTAACAAACTTT+TGG | + | chr8_1:13808537-13808556 | None:intergenic | 40.0% |
| AACTCTTGTGAGAATCAACC+AGG | - | chr8_1:13808782-13808801 | Msa1180080:CDS | 40.0% | |
| GTTTATACTGTGTTGCAGCT+TGG | - | chr8_1:13808908-13808927 | Msa1180080:CDS | 40.0% | |
| GATTTCAGTTCTATGGTTCC+AGG | + | chr8_1:13809280-13809299 | None:intergenic | 40.0% | |
| CAATTTAAGGGATCACTGCA+TGG | - | chr8_1:13809576-13809595 | Msa1180080:intron | 40.0% | |
| GTGAGTTAGAAATCGGTACA+AGG | - | chr8_1:13809635-13809654 | Msa1180080:intron | 40.0% | |
| TCCAGCTCAGAATGTAGATT+TGG | - | chr8_1:13809727-13809746 | Msa1180080:intron | 40.0% | |
| ACCAAATCTACATTCTGAGC+TGG | + | chr8_1:13809731-13809750 | None:intergenic | 40.0% | |
| AGTTGAGGGAGGAACTAAAT+GGG | - | chr8_1:13810051-13810070 | Msa1180080:intron | 40.0% | |
| AGACAATTCTTAGACGCGTA+TGG | - | chr8_1:13810089-13810108 | Msa1180080:intron | 40.0% | |
| TACTGTTCTACTATGGACCT+AGG | + | chr8_1:13810239-13810258 | None:intergenic | 40.0% | |
| TTCAATTCAAGCAGGATGGT+AGG | - | chr8_1:13810290-13810309 | Msa1180080:intron | 40.0% | |
| ! | TATCACATGAGGCACTTCTT+TGG | + | chr8_1:13810317-13810336 | None:intergenic | 40.0% |
| ! | GCTACGCTTTATTCTCATGT+TGG | + | chr8_1:13810430-13810449 | None:intergenic | 40.0% |
| CAGTGATGAGATTGTTGTGT+TGG | - | chr8_1:13810449-13810468 | Msa1180080:intron | 40.0% | |
| AGATTGTTGTGTTGGATGTG+TGG | - | chr8_1:13810457-13810476 | Msa1180080:intron | 40.0% | |
| ! | GATGTGTGGACTATCAAGAT+AGG | - | chr8_1:13810471-13810490 | Msa1180080:intron | 40.0% |
| AGAGAGAGAGTAAAAGATGG+TGG | - | chr8_1:13810512-13810531 | Msa1180080:intron | 40.0% | |
| TCTCGTTTGATCCATGTAAC+CGG | - | chr8_1:13810716-13810735 | Msa1180080:CDS | 40.0% | |
| ATGCAAGACTTCATGTAAGG+AGG | + | chr8_1:13810990-13811009 | None:intergenic | 40.0% | |
| GAAGAAGATTCTCTGTTGAC+TGG | + | chr8_1:13811132-13811151 | None:intergenic | 40.0% | |
| CAGGTGCAAAGATTAATTGC+TGG | - | chr8_1:13811275-13811294 | Msa1180080:CDS | 40.0% | |
| ! | TTGGAGGAGGATGTTTCTAT+TGG | + | chr8_1:13811347-13811366 | None:intergenic | 40.0% |
| TCGAGTTTAAAAACTGTCGG+CGG | + | chr8_1:13811401-13811420 | None:intergenic | 40.0% | |
| ! | ACAGGAACTAACCATTGGTT+TGG | + | chr8_1:13811632-13811651 | None:intergenic | 40.0% |
| ACATGACAGGAACTAACCAT+TGG | + | chr8_1:13811637-13811656 | None:intergenic | 40.0% | |
| GTCCAATGAGCTTCAATCAA+GGG | - | chr8_1:13811747-13811766 | Msa1180080:intron | 40.0% | |
| ACACATGGTGGTAACAATTG+TGG | + | chr8_1:13811851-13811870 | None:intergenic | 40.0% | |
| ! | ATGAATGATGGAACACATGG+TGG | + | chr8_1:13811863-13811882 | None:intergenic | 40.0% |
| ! | TGCATGAATGATGGAACACA+TGG | + | chr8_1:13811866-13811885 | None:intergenic | 40.0% |
| ! | TGGACATGTTAGATGGACTT+TGG | + | chr8_1:13811985-13812004 | None:intergenic | 40.0% |
| ATCTGAGTGGACATGTTAGA+TGG | + | chr8_1:13811992-13812011 | None:intergenic | 40.0% | |
| ! | TGAACTTCCTTTGTTTCCGT+TGG | - | chr8_1:13812117-13812136 | Msa1180080:CDS | 40.0% |
| TTACTCTTGAGTGATGTTCC+TGG | + | chr8_1:13812189-13812208 | None:intergenic | 40.0% | |
| GATGAAAGGGGCAATTGATG+AGG | - | chr8_1:13808091-13808110 | Msa1180080:CDS | 45.0% | |
| CTCACATGGCTTGATGTTGT+AGG | + | chr8_1:13808296-13808315 | None:intergenic | 45.0% | |
| !!! | ACTTTTGGGACAAGCCCAAA+GGG | + | chr8_1:13808522-13808541 | None:intergenic | 45.0% |
| !!! | AACTTTTGGGACAAGCCCAA+AGG | + | chr8_1:13808523-13808542 | None:intergenic | 45.0% |
| AGTACCTCATAATCGTACCG+CGG | + | chr8_1:13808570-13808589 | None:intergenic | 45.0% | |
| GTCGGACACATAAGCACAAT+TGG | - | chr8_1:13808664-13808683 | Msa1180080:CDS | 45.0% | |
| TAAGCACAATTGGCCGAACT+CGG | - | chr8_1:13808674-13808693 | Msa1180080:CDS | 45.0% | |
| TGACTTAGAGCACATGACAC+CGG | - | chr8_1:13809042-13809061 | Msa1180080:CDS | 45.0% | |
| AGAAAGGTGATGAACTCACC+TGG | - | chr8_1:13809259-13809278 | Msa1180080:intron | 45.0% | |
| GAGAGAGAGGAGTAAAGATG+AGG | - | chr8_1:13809672-13809691 | Msa1180080:intron | 45.0% | |
| TAAGTCCTACGACATCGTCA+GGG | + | chr8_1:13809765-13809784 | None:intergenic | 45.0% | |
| ATAAGTCCTACGACATCGTC+AGG | + | chr8_1:13809766-13809785 | None:intergenic | 45.0% | |
| GACGATGTCGTAGGACTTAT+AGG | - | chr8_1:13809766-13809785 | Msa1180080:intron | 45.0% | |
| CACTGCTTTGGTACATGAAC+TGG | + | chr8_1:13810005-13810024 | None:intergenic | 45.0% | |
| CTTAAGCAGAGTCACTGCTT+TGG | + | chr8_1:13810017-13810036 | None:intergenic | 45.0% | |
| CTCTGCTTAAGTGTCCTACT+TGG | - | chr8_1:13810026-13810045 | Msa1180080:intron | 45.0% | |
| TGTCCTACTTGGAGAGTTGA+GGG | - | chr8_1:13810037-13810056 | Msa1180080:intron | 45.0% | |
| GAGTTGAGGGAGGAACTAAA+TGG | - | chr8_1:13810050-13810069 | Msa1180080:intron | 45.0% | |
| !! | ACTTTGGTTTGCTTCTACGC+AGG | + | chr8_1:13810121-13810140 | None:intergenic | 45.0% |
| ACCAACAATGTTGTACGGGA+TGG | - | chr8_1:13810385-13810404 | Msa1180080:intron | 45.0% | |
| TCCATCCCGTACAACATTGT+TGG | + | chr8_1:13810389-13810408 | None:intergenic | 45.0% | |
| ACTAAGTAGGACCGGTTACA+TGG | + | chr8_1:13810730-13810749 | None:intergenic | 45.0% | |
| ATGTAACCGGTCCTACTTAG+TGG | - | chr8_1:13810729-13810748 | Msa1180080:CDS | 45.0% | |
| TGTAACCGGTCCTACTTAGT+GGG | - | chr8_1:13810730-13810749 | Msa1180080:CDS | 45.0% | |
| CTTATCCCACTAAGTAGGAC+CGG | + | chr8_1:13810738-13810757 | None:intergenic | 45.0% | |
| ! | CAAGCCTTATCCCACTAAGT+AGG | + | chr8_1:13810743-13810762 | None:intergenic | 45.0% |
| ! | GAGGAGGATGTTTCTATTGG+TGG | + | chr8_1:13811344-13811363 | None:intergenic | 45.0% |
| TTCAACATCCTCGGAAGTAG+TGG | + | chr8_1:13811441-13811460 | None:intergenic | 45.0% | |
| TATCTGCAGAGGCTAATGCA+AGG | + | chr8_1:13811559-13811578 | None:intergenic | 45.0% | |
| !! | GACAATGCTTGGAGAGTGTT+TGG | + | chr8_1:13811594-13811613 | None:intergenic | 45.0% |
| !! | ACTAACCATTGGTTTGGTGG+TGG | + | chr8_1:13811626-13811645 | None:intergenic | 45.0% |
| !! | GGAACTAACCATTGGTTTGG+TGG | + | chr8_1:13811629-13811648 | None:intergenic | 45.0% |
| GGCATCATGACACCGTTATA+CGG | - | chr8_1:13811716-13811735 | Msa1180080:intron | 45.0% | |
| ATCATGACACCGTTATACGG+CGG | - | chr8_1:13811719-13811738 | Msa1180080:intron | 45.0% | |
| GGTCCAATGAGCTTCAATCA+AGG | - | chr8_1:13811746-13811765 | Msa1180080:intron | 45.0% | |
| CTCCCTTGATTGAAGCTCAT+TGG | + | chr8_1:13811752-13811771 | None:intergenic | 45.0% | |
| ! | AGGGAGCAAAGATGTTGCTT+TGG | - | chr8_1:13811766-13811785 | Msa1180080:intron | 45.0% |
| CAAAAGATTCGGCTCCTTTC+CGG | - | chr8_1:13811815-13811834 | Msa1180080:intron | 45.0% | |
| ! | GTGGTAATGATGAACCGGAA+AGG | + | chr8_1:13811832-13811851 | None:intergenic | 45.0% |
| ! | TCTGGTGATGACCAAAACGT+CGG | + | chr8_1:13812145-13812164 | None:intergenic | 45.0% |
| !!! | GCTGACTCACTTGCTGATTT+TGG | + | chr8_1:13812232-13812251 | None:intergenic | 45.0% |
| AGGGGCAATTGATGAGGGAA+AGG | - | chr8_1:13808097-13808116 | Msa1180080:CDS | 50.0% | |
| TACCTCATAATCGTACCGCG+GGG | + | chr8_1:13808568-13808587 | None:intergenic | 50.0% | |
| GTACCTCATAATCGTACCGC+GGG | + | chr8_1:13808569-13808588 | None:intergenic | 50.0% | |
| ACCTAATAGCACCCTGCAGT+CGG | - | chr8_1:13808646-13808665 | Msa1180080:CDS | 50.0% | |
| TGCTTATGTGTCCGACTGCA+GGG | + | chr8_1:13808660-13808679 | None:intergenic | 50.0% | |
| ACTGTGTTGCAGCTTGGTTG+TGG | - | chr8_1:13808914-13808933 | Msa1180080:CDS | 50.0% | |
| GTCATGACTCGCCATCAACT+TGG | + | chr8_1:13809026-13809045 | None:intergenic | 50.0% | |
| ATCGGTACAAGGTCCTCACA+TGG | - | chr8_1:13809646-13809665 | Msa1180080:intron | 50.0% | |
| AAGTCCTACGACATCGTCAG+GGG | + | chr8_1:13809764-13809783 | None:intergenic | 50.0% | |
| GTGTCCTACTTGGAGAGTTG+AGG | - | chr8_1:13810036-13810055 | Msa1180080:intron | 50.0% | |
| !! | TTGGTTTGCTTCTACGCAGG+CGG | + | chr8_1:13810118-13810137 | None:intergenic | 50.0% |
| GTGTGACAGGTGGTATGACA+TGG | + | chr8_1:13810205-13810224 | None:intergenic | 50.0% | |
| !! | AGATGGTGGAAACTCGGCAT+AGG | - | chr8_1:13810526-13810545 | Msa1180080:intron | 50.0% |
| CGGTCCTACTTAGTGGGATA+AGG | - | chr8_1:13810736-13810755 | Msa1180080:CDS | 50.0% | |
| !! | GCTTGGAGAGTGTTTGGCAT+TGG | + | chr8_1:13811588-13811607 | None:intergenic | 50.0% |
| !! | ATTGGTTTGGTGGTGGTGGA+GGG | + | chr8_1:13811619-13811638 | None:intergenic | 50.0% |
| !! | AACCATTGGTTTGGTGGTGG+TGG | + | chr8_1:13811623-13811642 | None:intergenic | 50.0% |
| CCTTCAGATGGAGACATGAC+AGG | + | chr8_1:13811650-13811669 | None:intergenic | 50.0% | |
| CCTGTCATGTCTCCATCTGA+AGG | - | chr8_1:13811647-13811666 | Msa1180080:intron | 50.0% | |
| !! | GAGGACCAAAAGCACCTCCA+AGG | - | chr8_1:13808168-13808187 | Msa1180080:CDS | 55.0% |
| CTGTGACTATTTGTCCCCCG+CGG | - | chr8_1:13808550-13808569 | Msa1180080:CDS | 55.0% | |
| ACCTCATAATCGTACCGCGG+GGG | + | chr8_1:13808567-13808586 | None:intergenic | 55.0% | |
| !! | TCCGACTGCAGGGTGCTATT+AGG | + | chr8_1:13808650-13808669 | None:intergenic | 55.0% |
| GTGCTTATGTGTCCGACTGC+AGG | + | chr8_1:13808661-13808680 | None:intergenic | 55.0% | |
| CCTCTCTCTCTTGCCATGTG+AGG | + | chr8_1:13809662-13809681 | None:intergenic | 55.0% | |
| CCTCACATGGCAAGAGAGAG+AGG | - | chr8_1:13809659-13809678 | Msa1180080:intron | 55.0% | |
| ATCTCCCCTGACGATGTCGT+AGG | - | chr8_1:13809757-13809776 | Msa1180080:intron | 55.0% | |
| CCTCCCTCAACTCTCCAAGT+AGG | + | chr8_1:13810043-13810062 | None:intergenic | 55.0% | |
| CCTACTTGGAGAGTTGAGGG+AGG | - | chr8_1:13810040-13810059 | Msa1180080:intron | 55.0% | |
| ACTCGACAGCAAGTCCGAGA+AGG | - | chr8_1:13811415-13811434 | Msa1180080:intron | 55.0% | |
| CTCGGAAGTAGTGGCCTTCT+CGG | + | chr8_1:13811432-13811451 | None:intergenic | 55.0% | |
| GGTGGAGGGTAGACAATGCT+TGG | + | chr8_1:13811605-13811624 | None:intergenic | 55.0% | |
| !! | CATTGGTTTGGTGGTGGTGG+AGG | + | chr8_1:13811620-13811639 | None:intergenic | 55.0% |
| CTCCACCACCACCAAACCAA+TGG | - | chr8_1:13811618-13811637 | Msa1180080:intron | 55.0% | |
| ! | GGAGGGCATGGTCCAATGAT+TGG | + | chr8_1:13811686-13811705 | None:intergenic | 55.0% |
| TGATGCCGCCAGCATTTGGA+GGG | + | chr8_1:13811703-13811722 | None:intergenic | 55.0% | |
| ATGATGCCGCCAGCATTTGG+AGG | + | chr8_1:13811704-13811723 | None:intergenic | 55.0% | |
| GTCATGATGCCGCCAGCATT+TGG | + | chr8_1:13811707-13811726 | None:intergenic | 55.0% | |
| ACACCGTTATACGGCGGTTG+CGG | - | chr8_1:13811725-13811744 | Msa1180080:intron | 55.0% | |
| !! | GTCGGTGCCAACGGAAACAA+AGG | + | chr8_1:13812127-13812146 | None:intergenic | 55.0% |
| !!! | TTCCGTTGGCACCGACGTTT+TGG | - | chr8_1:13812131-13812150 | Msa1180080:CDS | 55.0% |
| !! | GACCAAAACGTCGGTGCCAA+CGG | + | chr8_1:13812136-13812155 | None:intergenic | 55.0% |
| TCATCACTCGAGTCGCGATC+TGG | + | chr8_1:13812163-13812182 | None:intergenic | 55.0% | |
| CGACTCGAGTGATGAACACC+AGG | - | chr8_1:13812168-13812187 | Msa1180080:CDS | 55.0% | |
| TCCCCCGCGGTACGATTATG+AGG | - | chr8_1:13808563-13808582 | Msa1180080:CDS | 60.0% | |
| !! | GTACGGGATGGAGTGTTGCG+CGG | - | chr8_1:13810397-13810416 | Msa1180080:intron | 60.0% |
| CGAGAAGGCCACTACTTCCG+AGG | - | chr8_1:13811430-13811449 | Msa1180080:intron | 60.0% | |
| GGACCATGCCCTCCAAATGC+TGG | - | chr8_1:13811692-13811711 | Msa1180080:intron | 60.0% | |
| CCATGCCCTCCAAATGCTGG+CGG | - | chr8_1:13811695-13811714 | Msa1180080:intron | 60.0% | |
| GGACCGCAACCGCCGTATAA+CGG | + | chr8_1:13811731-13811750 | None:intergenic | 60.0% | |
| CCGCCAGCATTTGGAGGGCA+TGG | + | chr8_1:13811698-13811717 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 13808065 | 13812294 | 13808065 | ID=Msa1180080;Name=Msa1180080 |
| chr8_1 | mRNA | 13808065 | 13812294 | 13808065 | ID=Msa1180080-mRNA-1;Parent=Msa1180080;Name=Msa1180080-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.66|0.25|1|1|1|4|0|738 |
| chr8_1 | exon | 13812049 | 13812294 | 13812049 | ID=Msa1180080-mRNA-1:exon:5094;Parent=Msa1180080-mRNA-1 |
| chr8_1 | exon | 13810532 | 13811433 | 13810532 | ID=Msa1180080-mRNA-1:exon:5093;Parent=Msa1180080-mRNA-1 |
| chr8_1 | exon | 13809175 | 13809226 | 13809175 | ID=Msa1180080-mRNA-1:exon:5092;Parent=Msa1180080-mRNA-1 |
| chr8_1 | exon | 13808065 | 13809081 | 13808065 | ID=Msa1180080-mRNA-1:exon:5091;Parent=Msa1180080-mRNA-1 |
| chr8_1 | CDS | 13812049 | 13812294 | 13812049 | ID=Msa1180080-mRNA-1:cds;Parent=Msa1180080-mRNA-1 |
| chr8_1 | CDS | 13810532 | 13811433 | 13810532 | ID=Msa1180080-mRNA-1:cds;Parent=Msa1180080-mRNA-1 |
| chr8_1 | CDS | 13809175 | 13809226 | 13809175 | ID=Msa1180080-mRNA-1:cds;Parent=Msa1180080-mRNA-1 |
| chr8_1 | CDS | 13808065 | 13809081 | 13808065 | ID=Msa1180080-mRNA-1:cds;Parent=Msa1180080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
