AlfalfaGEDB | Msa1235340

M. sativa cultivar zhongmu-4 / Msa1235340

KEGG: K00454
GO: GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009555 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009628 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009753 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0016165 GO:0016491 GO:0016701 GO:0016702 GO:0022414 GO:0030258 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0034440 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051213 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0071704 GO:0080086 GO:0090567 GO:0099402 GO:1901700
PFAM: PF01477.26

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1235340	XP_003627308.1	97.087	927	11	1	1	911	1	927	0.0	1858

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1235340	sp\|O24371\|LOX31_SOLTU	71.597	933	222	6	1	910	1	913	0.0	1372

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1235340	G7L7J8	97.087	927	11	1	1	911	1	927	0.0	1858

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1235340	Msa1276570	0.879370	1.316666e-69	-8.615850e-47
Msa1235340	Msa1314790	0.847029	1.497413e-59	-8.615850e-47
Msa1235340	Msa1356050	0.855770	5.046213e-62	-8.615850e-47

Showing 1 to 3 of 3 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1235340	MtrunA17_Chr8g0344201	97.087	927	11	1	1	911	1	927	1858
Msa1235340	MtrunA17_Chr8g0377101	52.732	842	374	7	89	910	78	915	901
Msa1235340	MtrunA17_Chr4g0047281	53.025	843	346	11	90	911	82	895	879
Msa1235340	MtrunA17_Chr3g0118651	47.102	811	396	9	122	910	103	902	777
Msa1235340	MtrunA17_Chr3g0118641	46.979	811	397	11	122	910	102	901	769
Msa1235340	MtrunA17_Chr3g0118621	44.787	844	432	11	90	910	32	864	730
Msa1235340	MtrunA17_Chr1g0191921	44.678	855	446	10	79	910	7	857	722
Msa1235340	MtrunA17_Chr8g0342881	45.988	835	418	12	99	910	31	855	720
Msa1235340	MtrunA17_Chr8g0343021	46.229	822	405	12	113	910	55	863	714
Msa1235340	MtrunA17_Chr8g0343031	46.163	821	405	13	114	910	57	864	713

Showing 1 to 10 of 35 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1235340	AT1G17420.1	68.461	929	263	6	1	910	1	918	1330
Msa1235340	AT1G72520.1	69.305	935	252	11	1	910	1	925	1315
Msa1235340	AT1G67560.1	50.162	927	418	15	7	910	11	916	867
Msa1235340	AT3G45140.1	43.088	868	448	15	66	910	51	895	715
Msa1235340	AT1G55020.1	44.799	846	435	14	90	910	20	858	711
Msa1235340	AT3G22400.1	43.735	862	448	12	83	910	27	885	703
Msa1235340	AT3G45140.2	45.921	760	379	11	173	910	4	753	688

Showing 1 to 7 of 7 entries

Previous1Next

Find 196 sgRNAs with CRISPR-Local

Find 513 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTATCCATACCCTAGA+CGG	0.586694	8_2:+13299060	Msa1235340:CDS
AAATTAAGATTGTTAGGACT+TGG	0.428810	8_2:-13305025	None:intergenic
AAATTAGATCCTGAAATCTA+TGG	0.468171	8_2:+13302036	Msa1235340:CDS
AACTCCAGCTATTGCTTGAC+GGG	0.470233	8_2:-13301968	None:intergenic
AAGGTGATTGATAGTAGGAA+TGG	0.600577	8_2:+13305380	Msa1235340:CDS
AAGTCCTAACAATCTTAATT+TGG	0.267658	8_2:+13305027	Msa1235340:CDS
AATCCCAGCAGGTGTATCAT+CGG	0.559593	8_2:-13298883	None:intergenic
AATCTGAGAGGTGATGGAAA+AGG	0.575229	8_2:+13298933	Msa1235340:CDS
AATCTTTCATTATTAGCTTT+AGG	0.408760	8_2:-13304797	None:intergenic
AATGAATTCTCAGATGTTGA+TGG	0.326863	8_2:+13300701	Msa1235340:CDS

Showing 1 to 10 of 196 entries

Previous1 2 3 4 5…20Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TCTTTCATTTCTCCAAACAT+AGG	+	chr8_2:13296936-13296955	Msa1235340:five_prime_UTR	30.0%
TCAAAGAAACCTTTGATTCA+TGG	+	chr8_2:13297017-13297036	Msa1235340:exon	30.0%
TTTCCATAAGGAACAAAAAC+AGG	-	chr8_2:13297144-13297163	None:intergenic	30.0%
ATGGAAACAAAAGAGTTGTA+AGG	+	chr8_2:13297157-13297176	Msa1235340:CDS	30.0%
GAAGATGATGATATAGAAGA+AGG	-	chr8_2:13297249-13297268	None:intergenic	30.0%
CACTAAAGAAAAGTCTTACT+TGG	-	chr8_2:13297441-13297460	None:intergenic	30.0%
GAAAAGAAAATTCTCTTTCC+AGG	-	chr8_2:13297836-13297855	None:intergenic	30.0%
ATTTATCTGTCATCAGAACA+TGG	+	chr8_2:13297909-13297928	Msa1235340:intron	30.0%
GGTGAAAATTGAAAGTTGAA+AGG	+	chr8_2:13298055-13298074	Msa1235340:intron	30.0%
ACTAGTACTAGTAGTCTTTA+TGG	+	chr8_2:13298625-13298644	Msa1235340:intron	30.0%

Showing 1 to 10 of 513 entries

Previous1 2 3 4 5…52Next

Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	13296801	13305794	13296801	ID=Msa1235340;Name=Msa1235340
chr8_2	mRNA	13296801	13305794	13296801	ID=Msa1235340-mRNA-1;Parent=Msa1235340;Name=Msa1235340-mRNA-1;_AED=0.03;_eAED=0.03;_QI=235\|0.85\|0.87\|1\|1\|1\|8\|277\|911
chr8_2	exon	13296801	13297441	13296801	ID=Msa1235340-mRNA-1:exon:5128;Parent=Msa1235340-mRNA-1
chr8_2	exon	13297582	13297862	13297582	ID=Msa1235340-mRNA-1:exon:5129;Parent=Msa1235340-mRNA-1
chr8_2	exon	13298873	13299113	13298873	ID=Msa1235340-mRNA-1:exon:5130;Parent=Msa1235340-mRNA-1
chr8_2	exon	13300531	13300866	13300531	ID=Msa1235340-mRNA-1:exon:5131;Parent=Msa1235340-mRNA-1
chr8_2	exon	13301932	13302125	13301932	ID=Msa1235340-mRNA-1:exon:5132;Parent=Msa1235340-mRNA-1
chr8_2	exon	13302737	13303038	13302737	ID=Msa1235340-mRNA-1:exon:5133;Parent=Msa1235340-mRNA-1
chr8_2	exon	13303471	13303689	13303471	ID=Msa1235340-mRNA-1:exon:5134;Parent=Msa1235340-mRNA-1
chr8_2	exon	13304761	13305794	13304761	ID=Msa1235340-mRNA-1:exon:5135;Parent=Msa1235340-mRNA-1
chr8_2	five_prime_UTR	13296801	13297035	13296801	ID=Msa1235340-mRNA-1:five_prime_utr;Parent=Msa1235340-mRNA-1
chr8_2	CDS	13297036	13297441	13297036	ID=Msa1235340-mRNA-1:cds;Parent=Msa1235340-mRNA-1
chr8_2	CDS	13297582	13297862	13297582	ID=Msa1235340-mRNA-1:cds;Parent=Msa1235340-mRNA-1
chr8_2	CDS	13298873	13299113	13298873	ID=Msa1235340-mRNA-1:cds;Parent=Msa1235340-mRNA-1
chr8_2	CDS	13300531	13300866	13300531	ID=Msa1235340-mRNA-1:cds;Parent=Msa1235340-mRNA-1
chr8_2	CDS	13301932	13302125	13301932	ID=Msa1235340-mRNA-1:cds;Parent=Msa1235340-mRNA-1
chr8_2	CDS	13302737	13303038	13302737	ID=Msa1235340-mRNA-1:cds;Parent=Msa1235340-mRNA-1
chr8_2	CDS	13303471	13303689	13303471	ID=Msa1235340-mRNA-1:cds;Parent=Msa1235340-mRNA-1
chr8_2	CDS	13304761	13305517	13304761	ID=Msa1235340-mRNA-1:cds;Parent=Msa1235340-mRNA-1
chr8_2	three_prime_UTR	13305518	13305794	13305518	ID=Msa1235340-mRNA-1:three_prime_utr;Parent=Msa1235340-mRNA-1

Gene Sequence

>Msa1235340

ATGGCCCTAACAAAAGAATTCATGGGTTCTTCATTGGTAGAGAGACCAATATTTCCTTCTTCTTCACCATGTTTTCAACAGAAGAATGGTGGATTCTTGATCAGTCCTGTTTTTGTTCCTTATGGAAACAAAAGAGTTGTAAGGTTGAGAAAATCTGCAAAGTTTCCTGTTGCAGCTATCAGTGAAGATTTGATGAAAAACTCTTCTTCACCTTCTTCTATATCATCATCTTCTTCTTCTGTTCCTGCTGAAAAACCAGTGAAATTTAAGGTTAGAGCTGTTGTAACAGTGAGGAACAAGATCAAAGAGGATTTCAAAGAGACTTTTGTGAAACATCTTGATGCTTTTACTGATAGGATTGGAAGAAATGTTGTTCTTGAACTTTTTAGCACTGAGATTGATCCAAAAACAAAAGCTGCAAAGAAGACCAATGAAGCAGTGTTGAAGGATTGGTCAAAGAAGACTAATATTAAGGCAGAGAGAGTTAATTACACAGCTGAATTTACGGTTGACTCAAATTTTGGAGAACCAGGAGCTATTACTGTGATAAATAATCATCAGCAAGAATTTTACTTAGAAAATATAACAATTGAAGGATTTGCTACTGGAGCATTTCATTTTCCTTGCAATTCTTGGGTTCAAGCTAGGAAAGATCTTCCTGGAAAGAGAATTTTCTTTTCTAATAAGCCTTATCTACCCGATGATACACCTGCTGGGATTAAACTTTTGAGAGAGAAAGACCTGAAAAATCTGAGAGGTGATGGAAAAGGAGTTAGAAAATTATCTGACAGAATATATGATTATGACACATACAATGATCTTGGAAACCCAGATAAAGGAATTGATCTTGCTAGACCAACTCTTGGAGGATCTGAAATGTATCCATACCCTAGACGGTGCCGTACTGGCCGTGAACCATCTGATACAGATATTACTTGTGAGAGTCGTGTGGAGAAGCCACTTCCTATGTATATACCAAGAGATGAAAGATTTGAGGAATCCAAAATGAACACATTTTCAGTGAAGAGGCTAAAAGGAGTGCTTCATAACTTGCTTCCTGGCCTTAAATCAAGTCTTTCTGCTCAAAACAGAGATTTCAATGAATTCTCAGATGTTGATGGCCTTTATAGTGTTGGACTACTCATTAAGTTGGGTTTGCAAGATGATATTTTGAAGAAACTTCCATTGCCTCACATTGTTAGCAAGATCCAAGAATCCACAAGCCAGGGTATCCTTAAGTATGACATTCCCAAGATTATATCAAAGGATAAATTTGCTTGGTTGAGAGATGATGAATTTGCCCGTCAAGCAATAGCTGGAGTTAATCCTGTTACCATTGAGAGACTTACAGTTTTCCCACCTGTTAGTAAATTAGATCCTGAAATCTATGGTCCACAAGAGTCTGCACTTAAAGAAGAGCACATTTTAAATCAACTTAATGGCATGACCGTCCAAGAGGCAATAGATCAAAATAAGTTGTTTATAATTGATTATCATGATATCTACCTTCCATTTTTGGAAAGGATCAATGCCTTGGATGGTAGAAAATCATATGCCACACGTACCATATACTTTTTGACACCACTTGGTACTCTAAAGCCTGTTGCAATTGAACTTAGCCTGCCTCCATCTGGACCAAACACTCGATCAAAACGTGTAGTTACACCTGCTTTAGATGCAACTACTAATTGGGTGTGGATGCTTGCAAAAGCTCATGTTTGCTCCAATGATGCTGGTGTGCACCAACTTGCCCACCATTGGCAATTAAGTGCAATGCATCCAATTTTCAAGTTATTGGATCCACACATGAGGTACACTTTGGAGATCAATGCTTTAGCTCGACAGAGCTTGATCAATGCAGATGGTGTCATTGAGTCTTGCTTCACTCCTGGTCGCTATGCCATGGAGATTAGTTCTGCTGCTTACAAAACCAACTGGCGTTTTGACCAGGATAGCCTCCCTCAAGATCTCATCCGCAGGGGAATGGCAGTACCTGACCCAACACAACCACATGGCCTAAAGCTAATAATGAAAGATTACCCTTATGCAGAAGATGGTCTTCTAATTTGGTCAGCAATAGAAAATTGGGTCCGCACTTATGTGAACTATTACTACCCAAATCCAAGCCTAATTATCAATGACAGAGAGTTACAAGCTTGGTACTCCGAATCAATCAATGTAGGCCACGCCGATATGAAAGACGAATCATGGTGGCCAAAATTGAACGACAGTGACAATCTTGTCCAAGTCCTAACAATCTTAATTTGGAATGCATCCGCGCAACATGCTGCACTTAATTTTGGACAGTACCCTTATGGAGGGTACGTGCCAAATCGTCCCCCGTTGATGAGAAGATTAATACCGGAAGAAAATGACCCTGAATATACAAGTTTCATATCTGATCCACAAAAGTATTTTCTCAATGCATTGCCTAGTTTGTTGCAAGCTACAAAATATATGGCTGTTGTTGACACGCTTTCGACTCATTCGTCTGACGAAGAGTATTTAGGTGAGAGGCAACAACCTTCGATTTGGACAGGTGATGCTGAGATTGTCGAAGCATTTTATCAATTCTCTGCGGAAATTGGAAAGATTGAGAAGGTGATTGATAGTAGGAATGGTGATAGGAATTTGAGGAACCGTTGCGGTGCTGGTGTTTTGCCGTATGAATTACTTGCTCCTAGTTCTGGACCTGGTGTTACATGCAGAGGGGTTCCAAATAGTGTGTCCACATAA

Protein sequence

>Msa1235340

MALTKEFMGSSLVERPIFPSSSPCFQQKNGGFLISPVFVPYGNKRVVRLRKSAKFPVAAISEDLMKNSSSPSSISSSSSSVPAEKPVKFKVRAVVTVRNKIKEDFKETFVKHLDAFTDRIGRNVVLELFSTEIDPKTKAAKKTNEAVLKDWSKKTNIKAERVNYTAEFTVDSNFGEPGAITVINNHQQEFYLENITIEGFATGAFHFPCNSWVQARKDLPGKRIFFSNKPYLPDDTPAGIKLLREKDLKNLRGDGKGVRKLSDRIYDYDTYNDLGNPDKGIDLARPTLGGSEMYPYPRRCRTGREPSDTDITCESRVEKPLPMYIPRDERFEESKMNTFSVKRLKGVLHNLLPGLKSSLSAQNRDFNEFSDVDGLYSVGLLIKLGLQDDILKKLPLPHIVSKIQESTSQGILKYDIPKIISKDKFAWLRDDEFARQAIAGVNPVTIERLTVFPPVSKLDPEIYGPQESALKEEHILNQLNGMTVQEAIDQNKLFIIDYHDIYLPFLERINALDGRKSYATRTIYFLTPLGTLKPVAIELSLPPSGPNTRSKRVVTPALDATTNWVWMLAKAHVCSNDAGVHQLAHHWQLSAMHPIFKLLDPHMRYTLEINALARQSLINADGVIESCFTPGRYAMEISSAAYKTNWRFDQDSLPQDLIRRGMAVPDPTQPHGLKLIMKDYPYAEDGLLIWSAIENWVRTYVNYYYPNPSLIINDRELQAWYSESINVGHADMKDESWWPKLNDSDNLVQVLTILIWNASAQHAALNFGQYPYGGYVPNRPPLMRRLIPEENDPEYTSFISDPQKYFLNALPSLLQATKYMAVVDTLSTHSSDEEYLGERQQPSIWTGDAEIVEAFYQFSAEIGKIEKVIDSRNGDRNLRNRCGAGVLPYELLAPSSGPGVTCRGVPNSVST*