AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1276570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1276570 MtrunA17_Chr8g0344201 96.764 927 14 1 1 911 1 927 0.0 1852
Msa1276570 MtrunA17_Chr8g0377101 52.732 842 374 7 89 910 78 915 0.0 902
Msa1276570 MtrunA17_Chr4g0047281 52.906 843 347 11 90 911 82 895 0.0 877
Msa1276570 MtrunA17_Chr3g0118651 46.856 811 398 9 122 910 103 902 0.0 775
Msa1276570 MtrunA17_Chr3g0118641 46.732 811 399 11 122 910 102 901 0.0 767
Msa1276570 MtrunA17_Chr3g0118621 44.550 844 434 11 90 910 32 864 0.0 728
Msa1276570 MtrunA17_Chr8g0342881 46.108 835 417 12 99 910 31 855 0.0 724
Msa1276570 MtrunA17_Chr1g0191921 44.771 851 443 10 83 910 11 857 0.0 722
Msa1276570 MtrunA17_Chr8g0343021 46.350 822 404 12 113 910 55 863 0.0 718
Msa1276570 MtrunA17_Chr8g0343031 46.285 821 404 13 114 910 57 864 0.0 717
Msa1276570 MtrunA17_Chr7g0272791 45.218 847 433 14 91 910 24 866 0.0 712
Msa1276570 MtrunA17_Chr5g0406871 45.808 823 408 14 113 910 57 866 0.0 711
Msa1276570 MtrunA17_Chr2g0329901 45.930 823 405 16 113 910 55 862 0.0 706
Msa1276570 MtrunA17_Chr4g0033171 50.212 707 324 10 225 910 25 724 0.0 705
Msa1276570 MtrunA17_Chr2g0329911 44.970 845 427 15 91 910 29 860 0.0 704
Msa1276570 MtrunA17_Chr1g0205611 43.641 857 450 13 84 910 2 855 0.0 692
Msa1276570 MtrunA17_Chr8g0342971 45.377 822 414 14 114 910 58 869 0.0 690
Msa1276570 MtrunA17_Chr8g0344211 44.093 821 426 12 113 910 57 867 0.0 682
Msa1276570 MtrunA17_Chr8g0343011 44.132 818 425 10 113 910 59 864 0.0 679
Msa1276570 MtrunA17_Chr8g0342921 44.103 814 422 12 120 910 65 868 0.0 676
Msa1276570 MtrunA17_Chr3g0120071 45.400 826 406 13 113 910 49 857 0.0 676
Msa1276570 MtrunA17_Chr8g0342931 45.982 759 378 10 174 910 1 749 0.0 673
Msa1276570 MtrunA17_Chr8g0342891 43.362 821 432 12 113 910 50 860 0.0 671
Msa1276570 MtrunA17_Chr8g0342951 44.823 821 420 12 113 910 57 867 0.0 667
Msa1276570 MtrunA17_Chr8g0342901 42.450 808 402 11 128 910 58 827 0.0 639
Msa1276570 MtrunA17_Chr8g0342981 42.876 765 373 13 177 910 91 822 0.0 600
Msa1276570 MtrunA17_Chr8g0343001 41.982 767 375 10 164 910 90 806 0.0 578
Msa1276570 MtrunA17_Chr8g0342991 41.927 768 374 12 164 910 90 806 0.0 572
Msa1276570 MtrunA17_Chr8g0338451 37.998 829 473 12 102 897 36 856 0.0 560
Msa1276570 MtrunA17_Chr8g0344241 44.557 395 200 4 534 910 67 460 3.36e-110 347
Msa1276570 MtrunA17_Chr6g0471951 36.926 501 259 6 385 866 12 474 3.88e-105 334
Msa1276570 MtrunA17_Chr7g0218231 52.101 119 41 1 578 680 14 132 1.45e-33 125
Msa1276570 MtrunA17_Chr6g0468081 59.551 89 36 0 592 680 1 89 6.28e-31 117
Msa1276570 MtrunA17_Chr4g0047271 57.609 92 39 0 820 911 1 92 3.85e-28 108
Msa1276570 MtrunA17_Chr4g0033181 39.860 143 80 3 89 229 73 211 3.23e-27 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1276570 AT1G17420.1 68.393 927 267 6 1 910 1 918 0.0 1326
Msa1276570 AT1G72520.1 69.091 935 254 11 1 910 1 925 0.0 1310
Msa1276570 AT1G67560.1 50.378 927 416 14 7 910 11 916 0.0 875
Msa1276570 AT3G45140.1 42.972 868 449 15 66 910 51 895 0.0 715
Msa1276570 AT1G55020.1 44.563 846 437 14 90 910 20 858 0.0 709
Msa1276570 AT3G22400.1 43.503 862 450 12 83 910 27 885 0.0 699
Msa1276570 AT3G45140.2 45.789 760 380 11 173 910 4 753 0.0 687

Find 196 sgRNAs with CRISPR-Local

Find 464 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGAAAATGTGTTCATTT+TGG 0.118061 8_3:+11310855 None:intergenic
TTTACGGTTGACTCAAATTT+TGG 0.128121 8_3:-11313551 Msa1276570:CDS
GCAAGATCAATTCCTTTATC+TGG 0.137436 8_3:+11312213 None:intergenic
CTTTAGATGCAACTACTAAT+TGG 0.156046 8_3:-11308557 Msa1276570:CDS
GAGCAGAAAGACTTGATTTA+AGG 0.159246 8_3:+11310794 None:intergenic
ACTCTCTGTCATTGATTATT+AGG 0.161431 8_3:+11306919 None:intergenic
TTTGGTCAGCAATAGAAAAT+TGG 0.164309 8_3:-11306980 Msa1276570:CDS
TATCAATTCTCTGCGGAAAT+TGG 0.203663 8_3:-11306480 Msa1276570:CDS
CAGAAGATGGTCTTCTAATT+TGG 0.251107 8_3:-11306998 Msa1276570:CDS
TCTTGTGGACCATAGATTTC+AGG 0.265813 8_3:+11309490 None:intergenic
GAATTACTTGCTCCTAGTTC+TGG 0.266117 8_3:-11306378 Msa1276570:CDS
AAGTCCTAACAATCTTAATT+TGG 0.267658 8_3:-11306800 Msa1276570:CDS
CATTCCAAATTAAGATTGTT+AGG 0.277408 8_3:+11306796 None:intergenic
TACCCTGGCTTGTGGATTCT+TGG 0.281500 8_3:+11310647 None:intergenic
TCGTCTGACGAAGAGTATTT+AGG 0.285117 8_3:-11306558 Msa1276570:CDS
GAAAAGAAAATTCTCTTTCC+AGG 0.286608 8_3:+11313395 None:intergenic
GATATGAAACTTGTATATTC+AGG 0.290338 8_3:+11306669 None:intergenic
TCAAAGAAACCTTTGATTCA+TGG 0.303009 8_3:-11314207 Msa1276570:exon
TTGATTATTAGGCTTGGATT+TGG 0.309327 8_3:+11306930 None:intergenic
TCCTCAAATCTTTCATCTCT+TGG 0.311154 8_3:+11310880 None:intergenic
TCAGGATCTAATTTACTAAC+AGG 0.316657 8_3:+11309508 None:intergenic
GTTGCAAGCTACAAAATATA+TGG 0.317917 8_3:-11306607 Msa1276570:CDS
TTGTCACTGTCGTTCAATTT+CGG 0.321906 8_3:+11306831 None:intergenic
CCACTCACTTGATATAATCT+TGG 0.323901 8_3:+11310606 None:intergenic
AATGAATTCTCAGATGTTGA+TGG 0.326863 8_3:-11310757 Msa1276570:CDS
GTCAAAGAAGACTAATATTA+AGG 0.327000 8_3:-11313600 Msa1276570:CDS
ATCCTTCAACACTGCTTCAT+TGG 0.329544 8_3:+11313625 None:intergenic
TAATTACACGGCTGAATTTA+CGG 0.330051 8_3:-11313567 Msa1276570:CDS
GTATTAATCTTCTCATCAAC+GGG 0.342100 8_3:+11306706 None:intergenic
AATTTCGGACAGTATCCTTA+TGG 0.355580 8_3:-11306750 Msa1276570:CDS
CTGTCATTGATTATTAGGCT+TGG 0.359024 8_3:+11306924 None:intergenic
CAACATGCTGCACTTAATTT+CGG 0.362410 8_3:-11306765 Msa1276570:CDS
GTAAGTCTCTCAATGGTAAC+AGG 0.380176 8_3:+11309541 None:intergenic
TTAGAAAATATAACAATTGA+AGG 0.381425 8_3:-11313479 Msa1276570:CDS
AGAGGCAACAACCTTCGATT+TGG 0.381540 8_3:-11306533 Msa1276570:CDS
GTGCTTCATAACTTGCTTCC+TGG 0.384287 8_3:-11310817 Msa1276570:CDS
GATCTTGGAAACCCAGATAA+AGG 0.388829 8_3:-11312225 Msa1276570:CDS
GGCCCTAACAAAAGAATTCA+TGG 0.391351 8_3:-11314186 Msa1276570:CDS
CCATGGTTCGTCTTTCATAT+CGG 0.393755 8_3:+11306857 None:intergenic
GGTGAAGAAGAAGGAAATAT+TGG 0.394404 8_3:+11314143 None:intergenic
AGAATTCATGGGTTCTTCAT+TGG 0.395604 8_3:-11314174 Msa1276570:CDS
GAACTTAGCCTGCCTCCATC+TGG 0.396553 8_3:-11308615 Msa1276570:CDS
TTGAGGAACCGTTGCGGTGC+TGG 0.401483 8_3:-11306414 Msa1276570:CDS
TTGGTCAGCAATAGAAAATT+GGG 0.402009 8_3:-11306979 Msa1276570:CDS
ATGGAAACAAGAGAGTTGTT+AGG 0.412627 8_3:-11314067 Msa1276570:CDS
TATGACACATACAATGATCT+TGG 0.412730 8_3:-11312240 Msa1276570:CDS
CACTCACTTGATATAATCTT+GGG 0.413543 8_3:+11310607 None:intergenic
AGAAGACCATCTTCTGCATA+AGG 0.416449 8_3:+11307005 None:intergenic
TTTGTTAATTTCTATGAAGA+AGG 0.416949 8_3:+11314256 None:intergenic
TGGTTGAGAGATGATGAATT+TGG 0.417349 8_3:-11309589 Msa1276570:CDS
TCTTGGGAATGTCATACTTA+AGG 0.423843 8_3:+11310623 None:intergenic
AAATTAAGATTGTTAGGACT+TGG 0.428810 8_3:+11306802 None:intergenic
TTTAGATGCAACTACTAATT+GGG 0.429267 8_3:-11308556 Msa1276570:CDS
TGAGTAGTCCAACACTATAA+AGG 0.430450 8_3:+11310734 None:intergenic
TTAGACCATGTGGTTGTGTT+GGG 0.432526 8_3:+11307048 None:intergenic
GATCTTGAGGGAGGCTATCC+TGG 0.433367 8_3:+11307874 None:intergenic
TGATTATTAGGCTTGGATTT+GGG 0.433593 8_3:+11306931 None:intergenic
TGTTGGACTACTCATTAAGT+TGG 0.436827 8_3:-11310725 Msa1276570:CDS
AGAAGTGGAACAGTGAGAAA+TGG 0.437846 8_3:+11314310 None:intergenic
TGCTAAGCATTATGGTTGGT+TGG 0.439918 8_3:-11306264 Msa1276570:three_prime_UTR
AAGTGGTGTCAAGAAGTATA+TGG 0.440407 8_3:+11308662 None:intergenic
TCTTTAAGTGCAGACTCTTG+TGG 0.444467 8_3:+11309475 None:intergenic
GGATCCAATAACTTGAAAAT+CGG 0.446610 8_3:+11308041 None:intergenic
CAAGATCAATTCCTTTATCT+GGG 0.447942 8_3:+11312214 None:intergenic
ATTGAGTCTTGCTTCACTCC+TGG 0.448673 8_3:-11307951 Msa1276570:CDS
ACAACTCTCTTGTTTCCATA+AGG 0.448928 8_3:+11314071 None:intergenic
TTGAGAAGGTGATTAATAGT+AGG 0.449342 8_3:-11306452 Msa1276570:CDS
GACCAATGAAGCAGTGTTGA+AGG 0.454038 8_3:-11313627 Msa1276570:CDS
TTTGTAGCTTGCAACAAACT+AGG 0.458682 8_3:+11306615 None:intergenic
TCTTTCATTTCTCCAAACAT+AGG 0.459834 8_3:-11314287 Msa1276570:five_prime_UTR
TTGGTGCACACCAGCATCAT+TGG 0.460866 8_3:+11308503 None:intergenic
CAAGCTAGGAAAGATCTTCC+TGG 0.462757 8_3:-11313413 Msa1276570:CDS
GAAAGACTTGATTTAAGGCC+AGG 0.464489 8_3:+11310799 None:intergenic
ACAATTGAAGGATTTGCTAC+TGG 0.466343 8_3:-11313467 Msa1276570:CDS
AAATTAGATCCTGAAATCTA+TGG 0.468171 8_3:-11309499 Msa1276570:CDS
GTGGCCTACATTGATTGATT+CGG 0.469250 8_3:+11306881 None:intergenic
AGGCTAAGTTCAATAGCAAC+AGG 0.472192 8_3:+11308627 None:intergenic
TCTTCACTGATAGCTGCAAC+AGG 0.474972 8_3:+11314023 None:intergenic
GTTGGACTACTCATTAAGTT+GGG 0.477312 8_3:-11310724 Msa1276570:CDS
ACCAAGAGATGAAAGATTTG+AGG 0.477798 8_3:-11310881 Msa1276570:CDS
TTTAGACCATGTGGTTGTGT+TGG 0.478176 8_3:+11307047 None:intergenic
GCAATTCTTGGGTTCAAGCT+AGG 0.478592 8_3:-11313427 Msa1276570:CDS
TTTGGAAAGGATCAATGCCT+TGG 0.478720 8_3:-11308712 Msa1276570:CDS
GATCTTGCTAGACCAACTCT+TGG 0.479530 8_3:-11312198 Msa1276570:CDS
GCTCTAACCTTAAATTTCAC+AGG 0.486545 8_3:+11313933 None:intergenic
CCATGTGGTTGTGTTGGGTC+TGG 0.492360 8_3:+11307053 None:intergenic
TCATCTCTTGGTATATACAT+AGG 0.492403 8_3:+11310892 None:intergenic
CGGCCAGTACGGCACCGTCT+AGG 0.495310 8_3:+11312153 None:intergenic
ATGAAGCAGTGTTGAAGGAT+TGG 0.497542 8_3:-11313622 Msa1276570:CDS
TACCCTAGACGGTGCCGTAC+TGG 0.498027 8_3:-11312156 Msa1276570:CDS
GAAGACCATCTTCTGCATAA+GGG 0.501628 8_3:+11307006 None:intergenic
TGCACCAACTTGCCCACCAT+TGG 0.505334 8_3:-11308488 Msa1276570:intron
CTAGGAGCAAGTAATTCATA+AGG 0.506030 8_3:+11306384 None:intergenic
CTCAAAAGTTTAATCCCAGC+AGG 0.506743 8_3:+11312333 None:intergenic
GGCCGTGAACCATCTGATAC+AGG 0.510574 8_3:-11312135 Msa1276570:intron
TTTATCACAGTAATAGCTCC+TGG 0.510933 8_3:+11313524 None:intergenic
TACCTGTATCAGATGGTTCA+CGG 0.511896 8_3:+11312133 None:intergenic
CTGCTGCTTACAAAACCAAC+TGG 0.511913 8_3:-11307905 Msa1276570:CDS
GATCCAAGAATCCACAAGCC+AGG 0.513956 8_3:-11310650 Msa1276570:CDS
CTTGCTCCTAGTTCTGGACC+TGG 0.515196 8_3:-11306372 Msa1276570:CDS
GTACGGCACCGTCTAGGGTA+TGG 0.515752 8_3:+11312159 None:intergenic
CTACCCGATGATACACCTGC+TGG 0.515885 8_3:-11312348 Msa1276570:CDS
GGTGTATCATCGGGTAGATA+AGG 0.517991 8_3:+11312354 None:intergenic
ATATACTTCTTGACACCACT+TGG 0.519965 8_3:-11308660 Msa1276570:CDS
TGAAAACATGGTGAAGAAGA+AGG 0.520459 8_3:+11314134 None:intergenic
GTTGATGGCCTTTATAGTGT+TGG 0.523396 8_3:-11310742 Msa1276570:CDS
CTTAAGGATACCCTGGCTTG+TGG 0.525590 8_3:+11310639 None:intergenic
TTTGGTCGTCAAGCAATAGC+TGG 0.525838 8_3:-11309571 Msa1276570:CDS
ATCTCCATGGCATAGCGACC+AGG 0.526081 8_3:+11307933 None:intergenic
GACCTGGTGTTACATGCAGA+GGG 0.527475 8_3:-11306356 Msa1276570:CDS
TGGAGAAATGAAAGAAGAAG+TGG 0.529072 8_3:+11314295 None:intergenic
GGTATTAATCTTCTCATCAA+CGG 0.530886 8_3:+11306705 None:intergenic
ATATGAAACTTGTATATTCA+GGG 0.530940 8_3:+11306670 None:intergenic
CTTACCAATGGTGGGCAAGT+TGG 0.533372 8_3:+11308484 None:intergenic
ATCCCAGCAGGTGTATCATC+GGG 0.533446 8_3:+11312345 None:intergenic
CACTCCTGGTCGCTATGCCA+TGG 0.533642 8_3:-11307937 Msa1276570:CDS
TGTTTGGTCCAGATGGAGGC+AGG 0.533655 8_3:+11308607 None:intergenic
ATTTCAGATCCTCCAAGAGT+TGG 0.535524 8_3:+11312186 None:intergenic
CTTGCTAGACCAACTCTTGG+AGG 0.537115 8_3:-11312195 Msa1276570:CDS
CAACAACCTTCGATTTGGAC+AGG 0.537155 8_3:-11306528 Msa1276570:CDS
TAATTATTACCTGTATCAGA+TGG 0.538174 8_3:+11312126 None:intergenic
GATTACCCTTATGCAGAAGA+TGG 0.539224 8_3:-11307011 Msa1276570:CDS
TTGTTAGGGCCATGAATCAA+AGG 0.539424 8_3:+11314198 None:intergenic
GAAAGGATCAATGCCTTGGA+TGG 0.543205 8_3:-11308708 Msa1276570:CDS
TTAATAGTAGGAATGGTGAT+AGG 0.543245 8_3:-11306440 Msa1276570:CDS
GTAACACCAGGTCCAGAACT+AGG 0.543782 8_3:+11306366 None:intergenic
AAGGTGATTAATAGTAGGAA+TGG 0.545295 8_3:-11306447 Msa1276570:CDS
TTGCTAACAATGTGAGGCAA+TGG 0.546196 8_3:+11310673 None:intergenic
CCATTCTTGTGTTGAAAACA+TGG 0.549764 8_3:+11314122 None:intergenic
CTTGGTATATACATAGGAAG+TGG 0.550676 8_3:+11310898 None:intergenic
TCCACACATGAGGTACACTT+TGG 0.551392 8_3:-11308021 Msa1276570:CDS
GGAATGGTGATAGGAATTTG+AGG 0.553948 8_3:-11306431 Msa1276570:CDS
GAACAGTGAGAAATGGTTAG+TGG 0.555931 8_3:+11314317 None:intergenic
GGACCTGGTGTTACATGCAG+AGG 0.558911 8_3:-11306357 Msa1276570:CDS
AATCCCAGCAGGTGTATCAT+CGG 0.559593 8_3:+11312344 None:intergenic
ACCTGCGGATGAGATCTTGA+GGG 0.562889 8_3:+11307862 None:intergenic
GGCCAGTACGGCACCGTCTA+GGG 0.564885 8_3:+11312154 None:intergenic
GATCGAGTGTTTGGTCCAGA+TGG 0.566962 8_3:+11308600 None:intergenic
TTAGTAGTTGCATCTAAAGC+AGG 0.568173 8_3:+11308561 None:intergenic
TTTGGCACGTAACCTCCATA+AGG 0.568931 8_3:+11306735 None:intergenic
GTTGATGAGAAGATTAATAC+CGG 0.571822 8_3:-11306703 Msa1276570:CDS
TCCCTCAAGATCTCATCCGC+AGG 0.574537 8_3:-11307863 Msa1276570:intron
GGATCTAATTTACTAACAGG+TGG 0.574715 8_3:+11309511 None:intergenic
GTGCAGAGGATAAATTTGCT+TGG 0.574838 8_3:-11309609 Msa1276570:intron
GATCTAATTTACTAACAGGT+GGG 0.574850 8_3:+11309512 None:intergenic
AATCTGAGAGGTGATGGAAA+AGG 0.575229 8_3:-11312294 Msa1276570:CDS
GAAAACTGTAAGTCTCTCAA+TGG 0.578316 8_3:+11309534 None:intergenic
ATCCTGGTCAAAACGCCAGT+TGG 0.579614 8_3:+11307890 None:intergenic
AAATGTATCCATACCCTAGA+CGG 0.586694 8_3:-11312167 Msa1276570:CDS
ATCCAAGAATCCACAAGCCA+GGG 0.589581 8_3:-11310649 Msa1276570:CDS
TTCGGACAGTATCCTTATGG+AGG 0.590508 8_3:-11306747 Msa1276570:CDS
ATTATTAGCTTTAGACCATG+TGG 0.590586 8_3:+11307038 None:intergenic
TACCCGATGATACACCTGCT+GGG 0.591254 8_3:-11312347 Msa1276570:CDS
TACCTGCGGATGAGATCTTG+AGG 0.594715 8_3:+11307861 None:intergenic
CAGATGGTTCACGGCCAGTA+CGG 0.595137 8_3:+11312142 None:intergenic
AGCAGCAGAACTAATCTCCA+TGG 0.597060 8_3:+11307920 None:intergenic
TGGATCTTGCTAACAATGTG+AGG 0.598996 8_3:+11310667 None:intergenic
GTATGCTTGCTTACCAATGG+TGG 0.599350 8_3:+11308475 None:intergenic
GCATCACCTGTCCAAATCGA+AGG 0.600030 8_3:+11306522 None:intergenic
CAGAGCTTGATCAATGCAGA+TGG 0.602184 8_3:-11307978 Msa1276570:CDS
ATATTACTAGTAGACATTGG+TGG 0.606826 8_3:-11306171 Msa1276570:three_prime_UTR
TCGTTCAATTTCGGCCACCA+TGG 0.607867 8_3:+11306840 None:intergenic
TGTCATACTTAAGGATACCC+TGG 0.608790 8_3:+11310632 None:intergenic
TAAATATTACTAGTAGACAT+TGG 0.610626 8_3:-11306174 Msa1276570:three_prime_UTR
TCCAAAGTGTACCTCATGTG+TGG 0.612282 8_3:+11308020 None:intergenic
CGAGTGTTTGGTCCAGATGG+AGG 0.614080 8_3:+11308603 None:intergenic
GCCCTAACAAAAGAATTCAT+GGG 0.614296 8_3:-11314185 Msa1276570:CDS
TTTAAATGGTACCTCTTGGA+CGG 0.616838 8_3:+11309420 None:intergenic
ACCCCTCTGCATGTAACACC+AGG 0.617716 8_3:+11306354 None:intergenic
ATTAAGTGCAGCATGTTGCG+CGG 0.618193 8_3:+11306770 None:intergenic
ATGCAACTACTAATTGGGTG+TGG 0.623131 8_3:-11308551 Msa1276570:CDS
ACGAAGAGTATTTAGGTGAG+AGG 0.628094 8_3:-11306551 Msa1276570:CDS
ATGACAGAGAGTTACAAGCT+TGG 0.632533 8_3:-11306908 Msa1276570:CDS
GAAATGGTTAGTGGTCGTGT+CGG 0.639946 8_3:+11314326 None:intergenic
TACTCCGAATCAATCAATGT+AGG 0.641645 8_3:-11306885 Msa1276570:CDS
GCAAAACACCAGCACCGCAA+CGG 0.642856 8_3:+11306406 None:intergenic
GCTTGAACCCAAGAATTGCA+AGG 0.647001 8_3:+11313431 None:intergenic
GGAAATTGGAAAGATTGAGA+AGG 0.652309 8_3:-11306466 Msa1276570:CDS
AGGAATTTGAGGAACCGTTG+CGG 0.653263 8_3:-11306420 Msa1276570:CDS
CAAGAAGTATATGGTACGTG+TGG 0.655715 8_3:+11308671 None:intergenic
TATGCTTGCTTACCAATGGT+GGG 0.656904 8_3:+11308476 None:intergenic
TATTACTTGTGAGAGTCGTG+TGG 0.661476 8_3:-11310926 Msa1276570:CDS
CCGATATGAAAGACGAACCA+TGG 0.663394 8_3:-11306857 Msa1276570:CDS
TAATGGCATGACCGTCCAAG+AGG 0.670114 8_3:-11309431 Msa1276570:intron
TGCGGATGAGATCTTGAGGG+AGG 0.673318 8_3:+11307865 None:intergenic
AGTTATTGGATCCACACATG+AGG 0.685129 8_3:-11308031 Msa1276570:CDS
GTTCGTCTTTCATATCGGCG+TGG 0.688334 8_3:+11306862 None:intergenic
CCAGACCCAACACAACCACA+TGG 0.693358 8_3:-11307053 Msa1276570:CDS
ACCTGGTGTTACATGCAGAG+GGG 0.702111 8_3:-11306355 Msa1276570:CDS
AGTAATAGTTCACATAAGTG+CGG 0.704279 8_3:+11306955 None:intergenic
GGCAGAGAGAGTTAATTACA+CGG 0.705740 8_3:-11313579 Msa1276570:CDS
TTAGAGCTGTTGTGACTGTG+AGG 0.719203 8_3:-11313917 Msa1276570:CDS
ATTAATCTTCTCATCAACGG+GGG 0.724917 8_3:+11306708 None:intergenic
ATATGAAAGACGAACCATGG+TGG 0.746586 8_3:-11306854 Msa1276570:CDS
TATTAATCTTCTCATCAACG+GGG 0.754646 8_3:+11306707 None:intergenic
ACAGGCTTTAGAGTGCCAAG+TGG 0.755676 8_3:+11308645 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTGATAATTAAATTAT+TGG - chr8_3:11306785-11306804 Msa1276570:CDS 10.0%
!!! AAGTTTTTTTTTTTGAAATA+AGG - chr8_3:11307286-11307305 Msa1276570:intron 10.0%
!! TAACAATAATTATAAAATCA+CGG + chr8_3:11307450-11307469 None:intergenic 10.0%
!! ATTTGTATAAATTTACATTA+GGG + chr8_3:11307954-11307973 None:intergenic 10.0%
!! TATTTGTATAAATTTACATT+AGG + chr8_3:11307955-11307974 None:intergenic 10.0%
!! AATTTATACAAATAATAAAG+TGG - chr8_3:11307961-11307980 Msa1276570:CDS 10.0%
!!! TTAATTAAATAAGCTATTTT+AGG - chr8_3:11308373-11308392 Msa1276570:intron 10.0%
!!! TAATTAAATAAGCTATTTTA+GGG - chr8_3:11308374-11308393 Msa1276570:intron 10.0%
!!! ATAAAATAGATTTTTTTTAG+AGG + chr8_3:11308621-11308640 None:intergenic 10.0%
!!! ATTTTTCATAAGTAAATTTT+TGG - chr8_3:11309982-11310001 Msa1276570:intron 10.0%
!!! TTTTTTATATATAAAAGGAA+TGG + chr8_3:11310662-11310681 None:intergenic 10.0%
!! ATATATAAAAAAATTACAAC+TGG - chr8_3:11310670-11310689 Msa1276570:CDS 10.0%
!! TATATAAAAAAATTACAACT+GGG - chr8_3:11310671-11310690 Msa1276570:CDS 10.0%
!! AGTAATAATTAATAACAAAT+TGG + chr8_3:11310697-11310716 None:intergenic 10.0%
!! TTAGAAAATATAACAATTGA+AGG - chr8_3:11307000-11307019 Msa1276570:CDS 15.0%
!!! TGTAGTATATATATTCTTTT+CGG - chr8_3:11308052-11308071 Msa1276570:CDS 15.0%
!!! TTTTAAAAATCTGTAACAAA+CGG - chr8_3:11308705-11308724 Msa1276570:CDS 15.0%
!!! TACAAATCAATTTGATTTTA+AGG - chr8_3:11309242-11309261 Msa1276570:intron 15.0%
!! TAGAAAATAATATTATAGCA+TGG + chr8_3:11309370-11309389 None:intergenic 15.0%
!!! GTATAAAATAATTTTACTCA+GGG + chr8_3:11309432-11309451 None:intergenic 15.0%
!!! AGTATAAAATAATTTTACTC+AGG + chr8_3:11309433-11309452 None:intergenic 15.0%
!! ATAATTAAGCAAAATTGAAT+TGG - chr8_3:11309517-11309536 Msa1276570:CDS 15.0%
!!! TGCACTTTTTTTTTTTTTTT+AGG - chr8_3:11309900-11309919 Msa1276570:intron 15.0%
!!! GCACTTTTTTTTTTTTTTTA+GGG - chr8_3:11309901-11309920 Msa1276570:intron 15.0%
!!! CAAATATTTTGAAAAAATTC+TGG - chr8_3:11310057-11310076 Msa1276570:intron 15.0%
!! GCATAATATATTAGAAATTT+AGG - chr8_3:11310196-11310215 Msa1276570:intron 15.0%
!!! TTTTGAGATATAATTTTCTT+AGG - chr8_3:11310271-11310290 Msa1276570:intron 15.0%
!!! TTTGAGATATAATTTTCTTA+GGG - chr8_3:11310272-11310291 Msa1276570:intron 15.0%
!!! TTTAGAAATTTTATAGAAAG+AGG + chr8_3:11310326-11310345 None:intergenic 15.0%
!! TATACCAATTATATTACTTA+AGG - chr8_3:11310415-11310434 Msa1276570:intron 15.0%
!! ATACCAATTATATTACTTAA+GGG - chr8_3:11310416-11310435 Msa1276570:intron 15.0%
!! TTAATTATTACTTGTTCATT+TGG - chr8_3:11310705-11310724 Msa1276570:CDS 15.0%
!!! GAGAAATATGTTTATTTTTA+AGG + chr8_3:11311208-11311227 None:intergenic 15.0%
!! AAAAATAAACATATTTCTCA+TGG - chr8_3:11311209-11311228 Msa1276570:intron 15.0%
!!! TTTCTTTAAAATCAAGTTAT+AGG + chr8_3:11311551-11311570 None:intergenic 15.0%
!!! AACTCTAAAGTTTAAAATAA+GGG - chr8_3:11312829-11312848 Msa1276570:intron 15.0%
!! TAATATTTACAATTTCTCTT+AGG + chr8_3:11312966-11312985 None:intergenic 15.0%
!!! GTTTTATATATATACAAGTG+AGG + chr8_3:11306104-11306123 None:intergenic 20.0%
!! TTTGTTAATTTCTATGAAGA+AGG + chr8_3:11306226-11306245 None:intergenic 20.0%
!!! GAGAATTTTCTTTTCTAATA+AGG - chr8_3:11307092-11307111 Msa1276570:intron 20.0%
!!! CTACTTTTTTTTTTCTTACT+GGG + chr8_3:11307186-11307205 None:intergenic 20.0%
!!! ACTACTTTTTTTTTTCTTAC+TGG + chr8_3:11307187-11307206 None:intergenic 20.0%
!!! TTTACGTTAAAATGAACTTT+TGG + chr8_3:11307378-11307397 None:intergenic 20.0%
!!! ATTTGACTATATGATTTTCT+AGG + chr8_3:11307534-11307553 None:intergenic 20.0%
!! TATAGTCAAATTTATGCATA+TGG - chr8_3:11307543-11307562 Msa1276570:intron 20.0%
!! TCGAAAAATAAAGATAAAGA+GGG + chr8_3:11307682-11307701 None:intergenic 20.0%
!! TCGTTTATTGGATTAAATTA+AGG - chr8_3:11307727-11307746 Msa1276570:intron 20.0%
!! TTTATTGGATTAAATTAAGG+TGG - chr8_3:11307730-11307749 Msa1276570:intron 20.0%
!! TTATTGGATTAAATTAAGGT+GGG - chr8_3:11307731-11307750 Msa1276570:intron 20.0%
!!! CCGCTTTATTTTTATATTTA+GGG + chr8_3:11307994-11308013 None:intergenic 20.0%
!! CCCTAAATATAAAAATAAAG+CGG - chr8_3:11307991-11308010 Msa1276570:CDS 20.0%
!!! ACCGCTTTATTTTTATATTT+AGG + chr8_3:11307995-11308014 None:intergenic 20.0%
!!! TTATTTTAATCCGTAACAAA+CGG + chr8_3:11308401-11308420 None:intergenic 20.0%
!!! AACAAATAATCTAGTTTGTT+TGG - chr8_3:11308527-11308546 Msa1276570:CDS 20.0%
!! TTTGGATACAACTATATAAA+AGG - chr8_3:11308545-11308564 Msa1276570:CDS 20.0%
!! TTGGATACAACTATATAAAA+GGG - chr8_3:11308546-11308565 Msa1276570:CDS 20.0%
!! CTTAAAAAAGCTATAACAAA+CGG - chr8_3:11308777-11308796 Msa1276570:intron 20.0%
!! TTAAAAAAGCTATAACAAAC+GGG - chr8_3:11308778-11308797 Msa1276570:intron 20.0%
!!! GTATTTAAAGTTATACATTG+CGG - chr8_3:11309012-11309031 Msa1276570:intron 20.0%
!! TATAAAACATCACAAAATGT+CGG + chr8_3:11309336-11309355 None:intergenic 20.0%
!!! ATAATATGTTACTTTGCTTA+TGG - chr8_3:11309485-11309504 Msa1276570:CDS 20.0%
!!! AATTCTGGATTACTAAATTT+TGG - chr8_3:11310072-11310091 Msa1276570:intron 20.0%
!!! ATTCTGGATTACTAAATTTT+GGG - chr8_3:11310073-11310092 Msa1276570:intron 20.0%
!! TGTTAATTCATTATTCAACT+TGG + chr8_3:11310118-11310137 None:intergenic 20.0%
!! TTTCCCTTAAGTAATATAAT+TGG + chr8_3:11310422-11310441 None:intergenic 20.0%
!! ATTCCATTATAGAATATTCA+TGG + chr8_3:11310495-11310514 None:intergenic 20.0%
!! TATCAACAGTTTATAATAAC+TGG + chr8_3:11310793-11310812 None:intergenic 20.0%
!!! CACATTTTAAATCAACTTAA+TGG - chr8_3:11311031-11311050 Msa1276570:intron 20.0%
!!! AAGTTTTTGAATGCTTTAAA+TGG + chr8_3:11311076-11311095 None:intergenic 20.0%
!!! TTCAAAAACTTTTTCCTTTT+TGG - chr8_3:11311085-11311104 Msa1276570:intron 20.0%
!!! TGTTTATTTTTAAGGTACAT+GGG + chr8_3:11311200-11311219 None:intergenic 20.0%
!!! ATGTTTATTTTTAAGGTACA+TGG + chr8_3:11311201-11311220 None:intergenic 20.0%
!! ACTTGACATCAAATTTATAA+TGG - chr8_3:11311244-11311263 Msa1276570:intron 20.0%
!! ATTTGGATACTTTAAACAAA+TGG - chr8_3:11311301-11311320 Msa1276570:intron 20.0%
!! ATGCAACTTAAATACTAAAT+TGG - chr8_3:11312290-11312309 Msa1276570:CDS 20.0%
!!! TTTCTTTGCTTATTTTTTCT+CGG - chr8_3:11312333-11312352 Msa1276570:CDS 20.0%
!! TAATATATGATATTTACCTG+CGG + chr8_3:11312635-11312654 None:intergenic 20.0%
!!! TATTTTAAACTTTAGAGTTG+AGG + chr8_3:11312828-11312847 None:intergenic 20.0%
!!! CAACTCTAAAGTTTAAAATA+AGG - chr8_3:11312828-11312847 Msa1276570:intron 20.0%
!!! TTTCTTTTATGATTTGTTTG+AGG - chr8_3:11312989-11313008 Msa1276570:intron 20.0%
!!! AAACTAAGTTGAATGTAAAA+TGG + chr8_3:11313232-11313251 None:intergenic 20.0%
!!! TAATTGATGTTTGCTTTATT+TGG - chr8_3:11313336-11313355 Msa1276570:intron 20.0%
!!! TTTTCACTTTTTAACATTTC+AGG - chr8_3:11313391-11313410 Msa1276570:CDS 20.0%
!!! TTTCACTTTTTAACATTTCA+GGG - chr8_3:11313392-11313411 Msa1276570:CDS 20.0%
!! ATATGAAACTTGTATATTCA+GGG + chr8_3:11313812-11313831 None:intergenic 20.0%
!!! TACTTAAGACTTTTTTTATG+TGG + chr8_3:11314165-11314184 None:intergenic 20.0%
!! TAAATATTACTAGTAGACAT+TGG - chr8_3:11314305-11314324 Msa1276570:five_prime_UTR 20.0%
! ACAAAAAAAACCTTAGAAGA+AGG - chr8_3:11306241-11306260 Msa1276570:three_prime_UTR 25.0%
! TGAAAAACCTGTGAAATTTA+AGG - chr8_3:11306539-11306558 Msa1276570:CDS 25.0%
! GTCAAAGAAGACTAATATTA+AGG - chr8_3:11306879-11306898 Msa1276570:CDS 25.0%
! ATTTATCTGTCATCATAACA+TGG - chr8_3:11307160-11307179 Msa1276570:intron 25.0%
!!! TTTTTTCAACGTGAGAAATA+AGG - chr8_3:11307253-11307272 Msa1276570:intron 25.0%
!!! TGTTTTGAAGAATCTTGAAA+AGG - chr8_3:11307342-11307361 Msa1276570:intron 25.0%
! ATTAGTATATCACTTTATCG+TGG + chr8_3:11307501-11307520 None:intergenic 25.0%
! ACTACTAGTATTCAATTCAA+CGG + chr8_3:11307626-11307645 None:intergenic 25.0%
! CTCGAAAAATAAAGATAAAG+AGG + chr8_3:11307683-11307702 None:intergenic 25.0%
!! ATATTCTTTTCGGAATAAAG+TGG - chr8_3:11308062-11308081 Msa1276570:CDS 25.0%
! TAATTATTACCTGTATCAGA+TGG + chr8_3:11308356-11308375 None:intergenic 25.0%
!!! TATTTTAATCCGTAACAAAC+GGG + chr8_3:11308400-11308419 None:intergenic 25.0%
! ATAGATGAAATCACAATAGT+CGG + chr8_3:11308912-11308931 None:intergenic 25.0%
!!! AACTATCACTTTTTTTCCTA+GGG + chr8_3:11309178-11309197 None:intergenic 25.0%
!!! AAACTATCACTTTTTTTCCT+AGG + chr8_3:11309179-11309198 None:intergenic 25.0%
! TAGGAAAAAAAGTGATAGTT+TGG - chr8_3:11309178-11309197 Msa1276570:intron 25.0%
!! TTTGATGTATTTTCTTACAG+AGG - chr8_3:11309284-11309303 Msa1276570:intron 25.0%
!! CATTTTGTGATGTTTTATAG+TGG - chr8_3:11309337-11309356 Msa1276570:intron 25.0%
! TTAAGCAAAATTGAATTGGA+TGG - chr8_3:11309521-11309540 Msa1276570:CDS 25.0%
! AATGTAGAATCAAAATTGTG+AGG + chr8_3:11310034-11310053 None:intergenic 25.0%
! TGAATTAACAAGTCATTAGA+TGG - chr8_3:11310128-11310147 Msa1276570:intron 25.0%
!! AACTGAAAACTCATCTTTTT+GGG + chr8_3:11310613-11310632 None:intergenic 25.0%
! AAATTAGATCCTGAAATCTA+TGG - chr8_3:11310980-11310999 Msa1276570:intron 25.0%
! GTTTGAAAAAACAATTCACA+AGG + chr8_3:11311155-11311174 None:intergenic 25.0%
! TACATGGGAAATGTTATAAT+TGG + chr8_3:11311185-11311204 None:intergenic 25.0%
!! ACTTAAATTGCTTAGTCTTT+AGG + chr8_3:11311353-11311372 None:intergenic 25.0%
!! AAGACTAAGCAATTTAAGTT+AGG - chr8_3:11311354-11311373 Msa1276570:intron 25.0%
!! AGACTAAGCAATTTAAGTTA+GGG - chr8_3:11311355-11311374 Msa1276570:intron 25.0%
! GGAGAAAAATCAGTTAAAAA+TGG - chr8_3:11311456-11311475 Msa1276570:intron 25.0%
!! AATTTTTGTTGGAACCTATT+GGG + chr8_3:11311498-11311517 None:intergenic 25.0%
!! TAATTTTTGTTGGAACCTAT+TGG + chr8_3:11311499-11311518 None:intergenic 25.0%
!! TTAACAGTGGTAATTTTTGT+TGG + chr8_3:11311509-11311528 None:intergenic 25.0%
! ACAAAAATTACCACTGTTAA+AGG - chr8_3:11311509-11311528 Msa1276570:intron 25.0%
! CCAAAAAAAGAAAAGAAAGT+GGG + chr8_3:11311681-11311700 None:intergenic 25.0%
! TCCAAAAAAAGAAAAGAAAG+TGG + chr8_3:11311682-11311701 None:intergenic 25.0%
!!! TTCTTTTTTTGGAATTTTGC+AGG - chr8_3:11311689-11311708 Msa1276570:intron 25.0%
! TTTAGATGCAACTACTAATT+GGG - chr8_3:11311923-11311942 Msa1276570:intron 25.0%
!! CACTTGTCACATAAAATTTT+AGG + chr8_3:11312065-11312084 None:intergenic 25.0%
!! TTCTCGGTGAATTTTTATAT+AGG - chr8_3:11312349-11312368 Msa1276570:CDS 25.0%
! TACGATTCTTTGCAATATTA+AGG - chr8_3:11312892-11312911 Msa1276570:intron 25.0%
! TATCAAAATATAGTTGAGGA+GGG + chr8_3:11312943-11312962 None:intergenic 25.0%
! TAGGTATCAAAATATAGTTG+AGG + chr8_3:11312947-11312966 None:intergenic 25.0%
! TTATATGTTTGAGTGCATTT+CGG - chr8_3:11313077-11313096 Msa1276570:intron 25.0%
! AATGTAAAATGGTTTACGTT+TGG + chr8_3:11313221-11313240 None:intergenic 25.0%
!!! TAGGTGTGTATTTGATTTTA+TGG + chr8_3:11313277-11313296 None:intergenic 25.0%
!! TACATGTTAAGAAAAGTGTA+GGG + chr8_3:11313318-11313337 None:intergenic 25.0%
!! TTACATGTTAAGAAAAGTGT+AGG + chr8_3:11313319-11313338 None:intergenic 25.0%
!!! TTCACTTTTTAACATTTCAG+GGG - chr8_3:11313393-11313412 Msa1276570:CDS 25.0%
! AAATTAAGATTGTTAGGACT+TGG + chr8_3:11313680-11313699 None:intergenic 25.0%
! AAGTCCTAACAATCTTAATT+TGG - chr8_3:11313679-11313698 Msa1276570:intron 25.0%
! CATTCCAAATTAAGATTGTT+AGG + chr8_3:11313686-11313705 None:intergenic 25.0%
! GATATGAAACTTGTATATTC+AGG + chr8_3:11313813-11313832 None:intergenic 25.0%
!! TCGGTTTTAATGTAAATAGC+TGG + chr8_3:11306137-11306156 None:intergenic 30.0%
TCTTTCATTTCTCCAAACAT+AGG - chr8_3:11306192-11306211 Msa1276570:three_prime_UTR 30.0%
!!! AAGGTTTTGTTTCCTATGTT+TGG + chr8_3:11306207-11306226 None:intergenic 30.0%
!!! GAGATTTTTTCCTTCTTCTA+AGG + chr8_3:11306254-11306273 None:intergenic 30.0%
TCAAAGAAACCTTTGATTCA+TGG - chr8_3:11306272-11306291 Msa1276570:three_prime_UTR 30.0%
! ACCCATGAATTCTTTTGTTA+GGG + chr8_3:11306298-11306317 None:intergenic 30.0%
! AACCCATGAATTCTTTTGTT+AGG + chr8_3:11306299-11306318 None:intergenic 30.0%
TTTCCATAAGGAACAAAAAC+AGG + chr8_3:11306399-11306418 None:intergenic 30.0%
! ATCTTGATGCTTTTACTGAT+AGG - chr8_3:11306625-11306644 Msa1276570:CDS 30.0%
CAATGAAGAAAAGTCTTACT+TGG + chr8_3:11306696-11306715 None:intergenic 30.0%
TAATTACACGGCTGAATTTA+CGG - chr8_3:11306912-11306931 Msa1276570:CDS 30.0%
!! TTTACGGTTGACTCAAATTT+TGG - chr8_3:11306928-11306947 Msa1276570:CDS 30.0%
! TTCATTTTCCTTGCAATTCT+TGG - chr8_3:11307040-11307059 Msa1276570:CDS 30.0%
! TCATTTTCCTTGCAATTCTT+GGG - chr8_3:11307041-11307060 Msa1276570:CDS 30.0%
GAAAAGAAAATTCTCTTTCC+AGG + chr8_3:11307087-11307106 None:intergenic 30.0%
GGTGAAAATTGAAAGTTGAA+AGG - chr8_3:11307307-11307326 Msa1276570:intron 30.0%
ACTAGTACTAGTAGTCTTTA+TGG - chr8_3:11307877-11307896 Msa1276570:CDS 30.0%
CTTAGTCAAAAGATCAAGAA+AGG + chr8_3:11308026-11308045 None:intergenic 30.0%
TATGACACATACAATGATCT+TGG - chr8_3:11308239-11308258 Msa1276570:intron 30.0%
CAAGATCAATTCCTTTATCT+GGG + chr8_3:11308268-11308287 None:intergenic 30.0%
ATTGCATTCTATCCTTTAGT+AGG - chr8_3:11308828-11308847 Msa1276570:intron 30.0%
TTGCATTCTATCCTTTAGTA+GGG - chr8_3:11308829-11308848 Msa1276570:intron 30.0%
ATAGTTTAACACCCTACTAA+AGG + chr8_3:11308843-11308862 None:intergenic 30.0%
TAGATGAAATCACAATAGTC+GGG + chr8_3:11308911-11308930 None:intergenic 30.0%
TGCAATGACATTTGATATGA+TGG - chr8_3:11309074-11309093 Msa1276570:intron 30.0%
GCAATGACATTTGATATGAT+GGG - chr8_3:11309075-11309094 Msa1276570:intron 30.0%
GTAAAGAAGTGAAGAAATGT+TGG + chr8_3:11309114-11309133 None:intergenic 30.0%
TCATCTCTTGGTATATACAT+AGG + chr8_3:11309590-11309609 None:intergenic 30.0%
! CACTGAAAATGTGTTCATTT+TGG + chr8_3:11309627-11309646 None:intergenic 30.0%
AATGAATTCTCAGATGTTGA+TGG - chr8_3:11309722-11309741 Msa1276570:intron 30.0%
CACTCACTTGATATAATCTT+GGG + chr8_3:11309875-11309894 None:intergenic 30.0%
GTCTTCCTTGCTTAAAAAAT+TGG - chr8_3:11309952-11309971 Msa1276570:intron 30.0%
!!! TGTAGCCAATTTTTTAAGCA+AGG + chr8_3:11309960-11309979 None:intergenic 30.0%
TGGCCATGAATATTCTATAA+TGG - chr8_3:11310489-11310508 Msa1276570:intron 30.0%
! TGTAGCACTATCTTTTCATA+TGG + chr8_3:11310527-11310546 None:intergenic 30.0%
! GAACTGAAAACTCATCTTTT+TGG + chr8_3:11310614-11310633 None:intergenic 30.0%
ACAATTGATTAGTACAGCTT+TGG + chr8_3:11310744-11310763 None:intergenic 30.0%
AAATTTATCCTCTGCACATT+AGG + chr8_3:11310867-11310886 None:intergenic 30.0%
GATCTAATTTACTAACAGGT+GGG + chr8_3:11310970-11310989 None:intergenic 30.0%
TCAGGATCTAATTTACTAAC+AGG + chr8_3:11310974-11310993 None:intergenic 30.0%
ATGAATGCATTGTACCAAAA+AGG + chr8_3:11311102-11311121 None:intergenic 30.0%
TAAAAATGGCGAATCTATCA+TGG - chr8_3:11311470-11311489 Msa1276570:intron 30.0%
! CCCACTTTCTTTTCTTTTTT+TGG - chr8_3:11311678-11311697 Msa1276570:intron 30.0%
! ATATGATTTTCTACCATCCA+AGG + chr8_3:11311787-11311806 None:intergenic 30.0%
CTTTAGATGCAACTACTAAT+TGG - chr8_3:11311922-11311941 Msa1276570:intron 30.0%
TGTATCAAATTGACATGTGT+CGG - chr8_3:11312158-11312177 Msa1276570:CDS 30.0%
!! TATTTAAGTTGCATGTGTCA+AGG + chr8_3:11312284-11312303 None:intergenic 30.0%
CTATGAGCAGACAATATAAA+TGG + chr8_3:11312399-11312418 None:intergenic 30.0%
CATTTATATTGTCTGCTCAT+AGG - chr8_3:11312397-11312416 Msa1276570:intron 30.0%
GGATCCAATAACTTGAAAAT+CGG + chr8_3:11312441-11312460 None:intergenic 30.0%
!! CTAGGATCTTTAAAACAAAG+CGG + chr8_3:11312675-11312694 None:intergenic 30.0%
GTATCAAAATATAGTTGAGG+AGG + chr8_3:11312944-11312963 None:intergenic 30.0%
TTGGACAAATTCACATATAG+TGG + chr8_3:11313202-11313221 None:intergenic 30.0%
! TTTTTAACATTTCAGGGGAA+TGG - chr8_3:11313398-11313417 Msa1276570:CDS 30.0%
!! ATTATTAGCTTTAGACCATG+TGG + chr8_3:11313444-11313463 None:intergenic 30.0%
TTTGGTCAGCAATAGAAAAT+TGG - chr8_3:11313499-11313518 Msa1276570:CDS 30.0%
TTGGTCAGCAATAGAAAATT+GGG - chr8_3:11313500-11313519 Msa1276570:CDS 30.0%
AGTAATAGTTCACATAAGTG+CGG + chr8_3:11313527-11313546 None:intergenic 30.0%
TGATTATTAGGCTTGGATTT+GGG + chr8_3:11313551-11313570 None:intergenic 30.0%
TTGATTATTAGGCTTGGATT+TGG + chr8_3:11313552-11313571 None:intergenic 30.0%
! ACTCTCTGTCATTGATTATT+AGG + chr8_3:11313563-11313582 None:intergenic 30.0%
TATTAATCTTCTCATCAACG+GGG + chr8_3:11313775-11313794 None:intergenic 30.0%
GTATTAATCTTCTCATCAAC+GGG + chr8_3:11313776-11313795 None:intergenic 30.0%
GGTATTAATCTTCTCATCAA+CGG + chr8_3:11313777-11313796 None:intergenic 30.0%
! GTTGATGAGAAGATTAATAC+CGG - chr8_3:11313776-11313795 Msa1276570:intron 30.0%
! GCATTGAGAAAATACTTTTG+TGG + chr8_3:11313840-11313859 None:intergenic 30.0%
GTTGCAAGCTACAAAATATA+TGG - chr8_3:11313872-11313891 Msa1276570:CDS 30.0%
! AGCATTTTATCAATTCTCTG+CGG - chr8_3:11313992-11314011 Msa1276570:CDS 30.0%
TTGAGAAGGTGATTAATAGT+AGG - chr8_3:11314027-11314046 Msa1276570:CDS 30.0%
AAGGTGATTAATAGTAGGAA+TGG - chr8_3:11314032-11314051 Msa1276570:CDS 30.0%
TTAATAGTAGGAATGGTGAT+AGG - chr8_3:11314039-11314058 Msa1276570:CDS 30.0%
! TTTTATGTGGACACACTATT+TGG + chr8_3:11314152-11314171 None:intergenic 30.0%
! TCACATTTTGCTAAGCATTA+TGG - chr8_3:11314207-11314226 Msa1276570:exon 30.0%
! ATTTTGCTAAGCATTATGGT+TGG - chr8_3:11314211-11314230 Msa1276570:five_prime_UTR 30.0%
ATATTACTAGTAGACATTGG+TGG - chr8_3:11314308-11314327 Msa1276570:five_prime_UTR 30.0%
TGGAGAAATGAAAGAAGAAG+TGG + chr8_3:11306187-11306206 None:intergenic 35.0%
GCCCTAACAAAAGAATTCAT+GGG - chr8_3:11306294-11306313 Msa1276570:three_prime_UTR 35.0%
AGAATTCATGGGTTCTTCAT+TGG - chr8_3:11306305-11306324 Msa1276570:three_prime_UTR 35.0%
GGTGAAGAAGAAGGAAATAT+TGG + chr8_3:11306339-11306358 None:intergenic 35.0%
TGAAAACATGGTGAAGAAGA+AGG + chr8_3:11306348-11306367 None:intergenic 35.0%
CCATTCTTGTGTTGAAAACA+TGG + chr8_3:11306360-11306379 None:intergenic 35.0%
! CCATGTTTTCAACACAAGAA+TGG - chr8_3:11306357-11306376 Msa1276570:CDS 35.0%
! TGTTTTCAACACAAGAATGG+TGG - chr8_3:11306360-11306379 Msa1276570:CDS 35.0%
!!! AGTCCTGTTTTTGTTCCTTA+TGG - chr8_3:11306393-11306412 Msa1276570:CDS 35.0%
! ACAACTCTCTTGTTTCCATA+AGG + chr8_3:11306411-11306430 None:intergenic 35.0%
ATGGAAACAAGAGAGTTGTT+AGG - chr8_3:11306412-11306431 Msa1276570:CDS 35.0%
!! AATTTCACAGGTTTTTCAGC+AGG + chr8_3:11306537-11306556 None:intergenic 35.0%
GCTCTAACCTTAAATTTCAC+AGG + chr8_3:11306549-11306568 None:intergenic 35.0%
! GATGCTTTTACTGATAGGAT+TGG - chr8_3:11306630-11306649 Msa1276570:CDS 35.0%
TTTATCACAGTAATAGCTCC+TGG + chr8_3:11306958-11306977 None:intergenic 35.0%
!! ACAATTGAAGGATTTGCTAC+TGG - chr8_3:11307012-11307031 Msa1276570:CDS 35.0%
GCCAAAAAAGTAGTATCGTA+AGG - chr8_3:11307210-11307229 Msa1276570:intron 35.0%
!!! GCCTTACGATACTACTTTTT+TGG + chr8_3:11307214-11307233 None:intergenic 35.0%
! TTATAAAATCACGGACTGCT+TGG + chr8_3:11307441-11307460 None:intergenic 35.0%
TCTAACACTCACTCGTTTAT+TGG - chr8_3:11307715-11307734 Msa1276570:intron 35.0%
AAAGACCTGAAAAATCTGAG+AGG - chr8_3:11308173-11308192 Msa1276570:intron 35.0%
GCAAGATCAATTCCTTTATC+TGG + chr8_3:11308269-11308288 None:intergenic 35.0%
AAATGTATCCATACCCTAGA+CGG - chr8_3:11308312-11308331 Msa1276570:intron 35.0%
CATCTAACATCGCACTTTAA+AGG + chr8_3:11308874-11308893 None:intergenic 35.0%
AGATGAAATCACAATAGTCG+GGG + chr8_3:11308910-11308929 None:intergenic 35.0%
TACAATGTGCAACTAAAACG+AGG + chr8_3:11308983-11309002 None:intergenic 35.0%
TTAGTTGCACATTGTACTCT+AGG - chr8_3:11308987-11309006 Msa1276570:intron 35.0%
!!! TTTTTTCCTAGGGAGATTAG+CGG + chr8_3:11309168-11309187 None:intergenic 35.0%
ATCATATCTAGACCAACTTG+TGG - chr8_3:11309307-11309326 Msa1276570:intron 35.0%
TCATATCTAGACCAACTTGT+GGG - chr8_3:11309308-11309327 Msa1276570:intron 35.0%
CTTGGTATATACATAGGAAG+TGG + chr8_3:11309584-11309603 None:intergenic 35.0%
ACCAAGAGATGAAAGATTTG+AGG - chr8_3:11309598-11309617 Msa1276570:CDS 35.0%
TCCTCAAATCTTTCATCTCT+TGG + chr8_3:11309602-11309621 None:intergenic 35.0%
! TGAACACATTTTCAGTGAAG+AGG - chr8_3:11309630-11309649 Msa1276570:intron 35.0%
! TTTTCAGTGAAGAGGCTAAA+AGG - chr8_3:11309638-11309657 Msa1276570:intron 35.0%
GAGCAGAAAGACTTGATTTA+AGG + chr8_3:11309688-11309707 None:intergenic 35.0%
TGAGTAGTCCAACACTATAA+AGG + chr8_3:11309748-11309767 None:intergenic 35.0%
TGTTGGACTACTCATTAAGT+TGG - chr8_3:11309754-11309773 Msa1276570:intron 35.0%
GTTGGACTACTCATTAAGTT+GGG - chr8_3:11309755-11309774 Msa1276570:intron 35.0%
TCTTGGGAATGTCATACTTA+AGG + chr8_3:11309859-11309878 None:intergenic 35.0%
CCACTCACTTGATATAATCT+TGG + chr8_3:11309876-11309895 None:intergenic 35.0%
CCAAGATTATATCAAGTGAG+TGG - chr8_3:11309873-11309892 Msa1276570:intron 35.0%
TTTCGCTTTCATTTGCAATG+TGG - chr8_3:11310457-11310476 Msa1276570:intron 35.0%
CCAAATAACATGTTGTAGTG+TGG + chr8_3:11310562-11310581 None:intergenic 35.0%
CCACACTACAACATGTTATT+TGG - chr8_3:11310559-11310578 Msa1276570:intron 35.0%
TGGTTGAGAGATGATGAATT+TGG - chr8_3:11310890-11310909 Msa1276570:CDS 35.0%
GAAAACTGTAAGTCTCTCAA+TGG + chr8_3:11310948-11310967 None:intergenic 35.0%
GGATCTAATTTACTAACAGG+TGG + chr8_3:11310971-11310990 None:intergenic 35.0%
TTTAAATGGTACCTCTTGGA+CGG + chr8_3:11311062-11311081 None:intergenic 35.0%
! ATGCTTTAAATGGTACCTCT+TGG + chr8_3:11311066-11311085 None:intergenic 35.0%
TTATAATGGTCACCAATACG+TGG - chr8_3:11311258-11311277 Msa1276570:intron 35.0%
AGGCAACTAACTCTTGTATA+TGG - chr8_3:11311435-11311454 Msa1276570:intron 35.0%
GTATCATTGTCCTTTAACAG+TGG + chr8_3:11311522-11311541 None:intergenic 35.0%
! TGACATCTACCTTCCATTTT+TGG - chr8_3:11311749-11311768 Msa1276570:intron 35.0%
!! TCTACCTTCCATTTTTGGAA+AGG - chr8_3:11311754-11311773 Msa1276570:intron 35.0%
TGATCCTTTCCAAAAATGGA+AGG + chr8_3:11311761-11311780 None:intergenic 35.0%
! GCATTGATCCTTTCCAAAAA+TGG + chr8_3:11311765-11311784 None:intergenic 35.0%
! AAGTGGTGTCAAGAAGTATA+TGG + chr8_3:11311820-11311839 None:intergenic 35.0%
ATATACTTCTTGACACCACT+TGG - chr8_3:11311819-11311838 Msa1276570:intron 35.0%
! TTAGTAGTTGCATCTAAAGC+AGG + chr8_3:11311921-11311940 None:intergenic 35.0%
ATTGTATGCTTGCTTACCAA+TGG + chr8_3:11312010-11312029 None:intergenic 35.0%
AAGACATTTACACTCACACA+TGG - chr8_3:11312089-11312108 Msa1276570:intron 35.0%
!!! GCATCCGATTTTCAAGTTAT+TGG - chr8_3:11312434-11312453 Msa1276570:intron 35.0%
CGAAAACAATTGATGTACAG+AGG + chr8_3:11312749-11312768 None:intergenic 35.0%
AAATACACACCTAGCTTCTA+CGG - chr8_3:11313284-11313303 Msa1276570:intron 35.0%
CAGAAGATGGTCTTCTAATT+TGG - chr8_3:11313481-11313500 Msa1276570:CDS 35.0%
! CTGTCATTGATTATTAGGCT+TGG + chr8_3:11313558-11313577 None:intergenic 35.0%
TACTCCGAATCAATCAATGT+AGG - chr8_3:11313594-11313613 Msa1276570:CDS 35.0%
TTGTCACTGTCGTTCAATTT+CGG + chr8_3:11313651-11313670 None:intergenic 35.0%
CAACATGCTGCACTTAATTT+CGG - chr8_3:11313714-11313733 Msa1276570:intron 35.0%
AATTTCGGACAGTATCCTTA+TGG - chr8_3:11313729-11313748 Msa1276570:intron 35.0%
ATTAATCTTCTCATCAACGG+GGG + chr8_3:11313774-11313793 None:intergenic 35.0%
!! TATTCAGGGTCATTTTCTTC+CGG + chr8_3:11313798-11313817 None:intergenic 35.0%
! TTTGTAGCTTGCAACAAACT+AGG + chr8_3:11313867-11313886 None:intergenic 35.0%
TATCAATTCTCTGCGGAAAT+TGG - chr8_3:11313999-11314018 Msa1276570:CDS 35.0%
GGAAATTGGAAAGATTGAGA+AGG - chr8_3:11314013-11314032 Msa1276570:CDS 35.0%
CTAGGAGCAAGTAATTCATA+AGG + chr8_3:11314098-11314117 None:intergenic 35.0%
TGCAATCACTCACTGAAAAA+TGG + chr8_3:11314395-11314414 None:intergenic 35.0%
AGTGAGTGATTGCAAAAATC+TGG - chr8_3:11314401-11314420 Msa1276570:five_prime_UTR 35.0%
GAACAGTGAGAAATGGTTAG+TGG + chr8_3:11306165-11306184 None:intergenic 40.0%
AGAAGTGGAACAGTGAGAAA+TGG + chr8_3:11306172-11306191 None:intergenic 40.0%
TTGTTAGGGCCATGAATCAA+AGG + chr8_3:11306284-11306303 None:intergenic 40.0%
GGCCCTAACAAAAGAATTCA+TGG - chr8_3:11306293-11306312 Msa1276570:three_prime_UTR 40.0%
ATCCTTCAACACTGCTTCAT+TGG + chr8_3:11306857-11306876 None:intergenic 40.0%
! ATGAAGCAGTGTTGAAGGAT+TGG - chr8_3:11306857-11306876 Msa1276570:CDS 40.0%
GGCAGAGAGAGTTAATTACA+CGG - chr8_3:11306900-11306919 Msa1276570:CDS 40.0%
!! GACTCAAATTTTGGAGAACC+AGG - chr8_3:11306937-11306956 Msa1276570:CDS 40.0%
GACTACCTACGGTATGAATT+GGG - chr8_3:11307592-11307611 Msa1276570:intron 40.0%
CTTTACCCAATTCATACCGT+AGG + chr8_3:11307600-11307619 None:intergenic 40.0%
ACTAGTAGTCTTTATGGTCG+AGG - chr8_3:11307883-11307902 Msa1276570:CDS 40.0%
TTTATGGTCGAGGATGAATG+TGG - chr8_3:11307893-11307912 Msa1276570:CDS 40.0%
TGGAGCAATAATCTTACCCT+CGG - chr8_3:11307913-11307932 Msa1276570:CDS 40.0%
GAAATGCTGAATATTGCCGA+GGG + chr8_3:11307932-11307951 None:intergenic 40.0%
CTCAAAAGTTTAATCCCAGC+AGG + chr8_3:11308149-11308168 None:intergenic 40.0%
! CATCACCTCTCAGATTTTTC+AGG + chr8_3:11308181-11308200 None:intergenic 40.0%
CTGAAAAATCTGAGAGGTGA+TGG - chr8_3:11308179-11308198 Msa1276570:intron 40.0%
!! AATCTGAGAGGTGATGGAAA+AGG - chr8_3:11308185-11308204 Msa1276570:intron 40.0%
GATCTTGGAAACCCAGATAA+AGG - chr8_3:11308254-11308273 Msa1276570:intron 40.0%
ATTTCAGATCCTCCAAGAGT+TGG + chr8_3:11308296-11308315 None:intergenic 40.0%
TACCTGTATCAGATGGTTCA+CGG + chr8_3:11308349-11308368 None:intergenic 40.0%
!!! ATTTTAGGGCCCGTTTGTTA+CGG - chr8_3:11308388-11308407 Msa1276570:intron 40.0%
GCTTCAAATGAGAAGCTGTT+AGG + chr8_3:11308655-11308674 None:intergenic 40.0%
AAGTGCGATGTTAGATGATC+TGG - chr8_3:11308877-11308896 Msa1276570:intron 40.0%
AGTGCGATGTTAGATGATCT+GGG - chr8_3:11308878-11308897 Msa1276570:intron 40.0%
! ACATTTGATATGATGGGACG+TGG - chr8_3:11309081-11309100 Msa1276570:intron 40.0%
! CATTTGATATGATGGGACGT+GGG - chr8_3:11309082-11309101 Msa1276570:intron 40.0%
TATTACTTGTGAGAGTCGTG+TGG - chr8_3:11309553-11309572 Msa1276570:CDS 40.0%
! GAAAGACTTGATTTAAGGCC+AGG + chr8_3:11309683-11309702 None:intergenic 40.0%
!! GTTGATGGCCTTTATAGTGT+TGG - chr8_3:11309737-11309756 Msa1276570:intron 40.0%
TTGCTAACAATGTGAGGCAA+TGG + chr8_3:11309809-11309828 None:intergenic 40.0%
TGGATCTTGCTAACAATGTG+AGG + chr8_3:11309815-11309834 None:intergenic 40.0%
TGTCATACTTAAGGATACCC+TGG + chr8_3:11309850-11309869 None:intergenic 40.0%
GCTTTCATTTGCAATGTGGT+GGG - chr8_3:11310461-11310480 Msa1276570:intron 40.0%
CTTTCATTTGCAATGTGGTG+GGG - chr8_3:11310462-11310481 Msa1276570:intron 40.0%
! GTGCAGAGGATAAATTTGCT+TGG - chr8_3:11310870-11310889 Msa1276570:CDS 40.0%
GTAAGTCTCTCAATGGTAAC+AGG + chr8_3:11310941-11310960 None:intergenic 40.0%
TCTTGTGGACCATAGATTTC+AGG + chr8_3:11310992-11311011 None:intergenic 40.0%
TCTTTAAGTGCAGACTCTTG+TGG + chr8_3:11311007-11311026 None:intergenic 40.0%
! AAGGCACTTGATAGGTAACA+TGG + chr8_3:11311136-11311155 None:intergenic 40.0%
! CAATTCACAAGGCACTTGAT+AGG + chr8_3:11311144-11311163 None:intergenic 40.0%
ACTTGAACCAAACCACGTAT+TGG + chr8_3:11311273-11311292 None:intergenic 40.0%
GGTTCAAGTAGTGAGTGATT+TGG - chr8_3:11311284-11311303 Msa1276570:intron 40.0%
AACATATTGTGTACGTCCTG+AGG - chr8_3:11311415-11311434 Msa1276570:intron 40.0%
ATACAAGAGTTAGTTGCCTC+AGG + chr8_3:11311434-11311453 None:intergenic 40.0%
AATCTATCATGGTGCCCAAT+AGG - chr8_3:11311481-11311500 Msa1276570:intron 40.0%
TTTGGAAAGGATCAATGCCT+TGG - chr8_3:11311767-11311786 Msa1276570:intron 40.0%
! CAAGAAGTATATGGTACGTG+TGG + chr8_3:11311811-11311830 None:intergenic 40.0%
AGGCTAAGTTCAATAGCAAC+AGG + chr8_3:11311855-11311874 None:intergenic 40.0%
!! ACACGTTTTGATCGAGTGTT+TGG + chr8_3:11311891-11311910 None:intergenic 40.0%
ATGCAACTACTAATTGGGTG+TGG - chr8_3:11311928-11311947 Msa1276570:intron 40.0%
! CATTTTTGCTCCAATGATGC+TGG - chr8_3:11311966-11311985 Msa1276570:intron 40.0%
TATGCTTGCTTACCAATGGT+GGG + chr8_3:11312006-11312025 None:intergenic 40.0%
GTGAAAAGACATTGCGACAT+AGG - chr8_3:11312201-11312220 Msa1276570:CDS 40.0%
AGTTATTGGATCCACACATG+AGG - chr8_3:11312448-11312467 Msa1276570:intron 40.0%
AATGCGCCTCAAATGGTAAA+AGG + chr8_3:11312775-11312794 None:intergenic 40.0%
TTAGACCATGTGGTTGTGTT+GGG + chr8_3:11313434-11313453 None:intergenic 40.0%
TTTAGACCATGTGGTTGTGT+TGG + chr8_3:11313435-11313454 None:intergenic 40.0%
GATTACCCTTATGCAGAAGA+TGG - chr8_3:11313468-11313487 Msa1276570:CDS 40.0%
GAAGACCATCTTCTGCATAA+GGG + chr8_3:11313476-11313495 None:intergenic 40.0%
AGAAGACCATCTTCTGCATA+AGG + chr8_3:11313477-11313496 None:intergenic 40.0%
ATGACAGAGAGTTACAAGCT+TGG - chr8_3:11313571-11313590 Msa1276570:CDS 40.0%
! GTGGCCTACATTGATTGATT+CGG + chr8_3:11313601-11313620 None:intergenic 40.0%
CCATGGTTCGTCTTTCATAT+CGG + chr8_3:11313625-11313644 None:intergenic 40.0%
ATATGAAAGACGAACCATGG+TGG - chr8_3:11313625-11313644 Msa1276570:CDS 40.0%
!! TCGTCTGACGAAGAGTATTT+AGG - chr8_3:11313921-11313940 Msa1276570:CDS 40.0%
!! ACGAAGAGTATTTAGGTGAG+AGG - chr8_3:11313928-11313947 Msa1276570:CDS 40.0%
GGAATGGTGATAGGAATTTG+AGG - chr8_3:11314048-11314067 Msa1276570:CDS 40.0%
GAATTACTTGCTCCTAGTTC+TGG - chr8_3:11314101-11314120 Msa1276570:CDS 40.0%
TGCTAAGCATTATGGTTGGT+TGG - chr8_3:11314215-11314234 Msa1276570:five_prime_UTR 40.0%
GAAATGGTTAGTGGTCGTGT+CGG + chr8_3:11306156-11306175 None:intergenic 45.0%
TCTTCACTGATAGCTGCAAC+AGG + chr8_3:11306459-11306478 None:intergenic 45.0%
TTAGAGCTGTTGTGACTGTG+AGG - chr8_3:11306562-11306581 Msa1276570:CDS 45.0%
! GACCAATGAAGCAGTGTTGA+AGG - chr8_3:11306852-11306871 Msa1276570:CDS 45.0%
GCTTGAACCCAAGAATTGCA+AGG + chr8_3:11307051-11307070 None:intergenic 45.0%
GCAATTCTTGGGTTCAAGCT+AGG - chr8_3:11307052-11307071 Msa1276570:CDS 45.0%
CAAGCTAGGAAAGATCTTCC+TGG - chr8_3:11307066-11307085 Msa1276570:CDS 45.0%
!! AATCACGGACTGCTTGGTTT+TGG + chr8_3:11307435-11307454 None:intergenic 45.0%
TAGTCGTCAGGTCAATTCAG+TGG + chr8_3:11307577-11307596 None:intergenic 45.0%
ATTGACCTGACGACTACCTA+CGG - chr8_3:11307581-11307600 Msa1276570:intron 45.0%
CGACTACCTACGGTATGAAT+TGG - chr8_3:11307591-11307610 Msa1276570:intron 45.0%
GGAAATGCTGAATATTGCCG+AGG + chr8_3:11307933-11307952 None:intergenic 45.0%
GGTGTATCATCGGGTAGATA+AGG + chr8_3:11308128-11308147 None:intergenic 45.0%
AATCCCAGCAGGTGTATCAT+CGG + chr8_3:11308138-11308157 None:intergenic 45.0%
GATCTTGCTAGACCAACTCT+TGG - chr8_3:11308281-11308300 Msa1276570:intron 45.0%
ATTTCACCGCTAATCTCCCT+AGG - chr8_3:11309159-11309178 Msa1276570:intron 45.0%
!! GTGCTTCATAACTTGCTTCC+TGG - chr8_3:11309662-11309681 Msa1276570:intron 45.0%
ATCCAAGAATCCACAAGCCA+GGG - chr8_3:11309830-11309849 Msa1276570:intron 45.0%
CGCTTTCATTTGCAATGTGG+TGG - chr8_3:11310460-11310479 Msa1276570:intron 45.0%
TTTGGTCGTCAAGCAATAGC+TGG - chr8_3:11310908-11310927 Msa1276570:CDS 45.0%
ATGGTCACCAATACGTGGTT+TGG - chr8_3:11311263-11311282 Msa1276570:intron 45.0%
GGTCAGAGATTTGACTACTC+AGG - chr8_3:11311322-11311341 Msa1276570:intron 45.0%
GTGCATTCAAGAGCAGACAT+AGG + chr8_3:11311589-11311608 None:intergenic 45.0%
GAAAGGATCAATGCCTTGGA+TGG - chr8_3:11311771-11311790 Msa1276570:intron 45.0%
GTATGCTTGCTTACCAATGG+TGG + chr8_3:11312007-11312026 None:intergenic 45.0%
TCCACACATGAGGTACACTT+TGG - chr8_3:11312458-11312477 Msa1276570:intron 45.0%
TCCAAAGTGTACCTCATGTG+TGG + chr8_3:11312462-11312481 None:intergenic 45.0%
CAGAGCTTGATCAATGCAGA+TGG - chr8_3:11312501-11312520 Msa1276570:intron 45.0%
ATTGAGTCTTGCTTCACTCC+TGG - chr8_3:11312528-11312547 Msa1276570:intron 45.0%
AGCAGCAGAACTAATCTCCA+TGG + chr8_3:11312562-11312581 None:intergenic 45.0%
! CTGCTGCTTACAAAACCAAC+TGG - chr8_3:11312574-11312593 Msa1276570:intron 45.0%
CGAAACTCACACACGCAATA+CGG - chr8_3:11312697-11312716 Msa1276570:intron 45.0%
! TCGCTGCCTTTTACCATTTG+AGG - chr8_3:11312766-11312785 Msa1276570:intron 45.0%
! TACCATTTGAGGCGCATTGT+TGG - chr8_3:11312777-11312796 Msa1276570:intron 45.0%
AACCAACAATGCGCCTCAAA+TGG + chr8_3:11312782-11312801 None:intergenic 45.0%
!!! TTGAGGAGGGTTTTAGAGAG+TGG + chr8_3:11312930-11312949 None:intergenic 45.0%
! GTCTCTTTTCCGTAGAAGCT+AGG + chr8_3:11313296-11313315 None:intergenic 45.0%
CCGATATGAAAGACGAACCA+TGG - chr8_3:11313622-11313641 Msa1276570:CDS 45.0%
ATTAAGTGCAGCATGTTGCG+CGG + chr8_3:11313712-11313731 None:intergenic 45.0%
TTCGGACAGTATCCTTATGG+AGG - chr8_3:11313732-11313751 Msa1276570:intron 45.0%
TTTGGCACGTAACCTCCATA+AGG + chr8_3:11313747-11313766 None:intergenic 45.0%
AGAGGCAACAACCTTCGATT+TGG - chr8_3:11313946-11313965 Msa1276570:CDS 45.0%
!! CAACAACCTTCGATTTGGAC+AGG - chr8_3:11313951-11313970 Msa1276570:CDS 45.0%
AGGAATTTGAGGAACCGTTG+CGG - chr8_3:11314059-11314078 Msa1276570:CDS 45.0%
!!! GTAATTTTTTTATATATAAA+AGG + chr8_3:11310667-11310686 None:intergenic 5.0%
!! TAAATATCATATATTAATTT+CGG - chr8_3:11312639-11312658 Msa1276570:intron 5.0%
CAGGTCAATTCAGTGGTGCT+TGG + chr8_3:11307570-11307589 None:intergenic 50.0%
TCATACCGTAGGTAGTCGTC+AGG + chr8_3:11307589-11307608 None:intergenic 50.0%
TACCCGATGATACACCTGCT+GGG - chr8_3:11308132-11308151 Msa1276570:intron 50.0%
ATCCCAGCAGGTGTATCATC+GGG + chr8_3:11308137-11308156 None:intergenic 50.0%
CTTGCTAGACCAACTCTTGG+AGG - chr8_3:11308284-11308303 Msa1276570:intron 50.0%
! AAATGTCGGTGCCCACAAGT+TGG + chr8_3:11309322-11309341 None:intergenic 50.0%
GATCCAAGAATCCACAAGCC+AGG - chr8_3:11309829-11309848 Msa1276570:intron 50.0%
! TACCCTGGCTTGTGGATTCT+TGG + chr8_3:11309835-11309854 None:intergenic 50.0%
! CTTAAGGATACCCTGGCTTG+TGG + chr8_3:11309843-11309862 None:intergenic 50.0%
! TTGCAATGTGGTGGGGTCTT+TGG - chr8_3:11310469-11310488 Msa1276570:intron 50.0%
CTCATGTGCCTAATGTGCAG+AGG - chr8_3:11310856-11310875 Msa1276570:CDS 50.0%
!! ACAGGCTTTAGAGTGCCAAG+TGG + chr8_3:11311837-11311856 None:intergenic 50.0%
GATCGAGTGTTTGGTCCAGA+TGG + chr8_3:11311882-11311901 None:intergenic 50.0%
TTGGTGCACACCAGCATCAT+TGG + chr8_3:11311979-11311998 None:intergenic 50.0%
!! CTTACCAATGGTGGGCAAGT+TGG + chr8_3:11311998-11312017 None:intergenic 50.0%
!! AACCAACTGGCGTTTTGACC+AGG - chr8_3:11312587-11312606 Msa1276570:intron 50.0%
ATCCTGGTCAAAACGCCAGT+TGG + chr8_3:11312592-11312611 None:intergenic 50.0%
ACCTGCGGATGAGATCTTGA+GGG + chr8_3:11312620-11312639 None:intergenic 50.0%
TACCTGCGGATGAGATCTTG+AGG + chr8_3:11312621-11312640 None:intergenic 50.0%
GCGTGTGTGAGTTTCGTTCT+AGG + chr8_3:11312693-11312712 None:intergenic 50.0%
GTTCGTCTTTCATATCGGCG+TGG + chr8_3:11313620-11313639 None:intergenic 50.0%
TCGTTCAATTTCGGCCACCA+TGG + chr8_3:11313642-11313661 None:intergenic 50.0%
GCATCACCTGTCCAAATCGA+AGG + chr8_3:11313960-11313979 None:intergenic 50.0%
GTAACACCAGGTCCAGAACT+AGG + chr8_3:11314116-11314135 None:intergenic 50.0%
!! GACCTGGTGTTACATGCAGA+GGG - chr8_3:11314123-11314142 Msa1276570:CDS 50.0%
!! ACCTGGTGTTACATGCAGAG+GGG - chr8_3:11314124-11314143 Msa1276570:CDS 50.0%
CTACCCGATGATACACCTGC+TGG - chr8_3:11308131-11308150 Msa1276570:intron 55.0%
CAGATGGTTCACGGCCAGTA+CGG + chr8_3:11308340-11308359 None:intergenic 55.0%
GGCCGTGAACCATCTGATAC+AGG - chr8_3:11308344-11308363 Msa1276570:intron 55.0%
GAACTTAGCCTGCCTCCATC+TGG - chr8_3:11311864-11311883 Msa1276570:intron 55.0%
TGTTTGGTCCAGATGGAGGC+AGG + chr8_3:11311875-11311894 None:intergenic 55.0%
CGAGTGTTTGGTCCAGATGG+AGG + chr8_3:11311879-11311898 None:intergenic 55.0%
TGCACCAACTTGCCCACCAT+TGG - chr8_3:11311991-11312010 Msa1276570:intron 55.0%
GCTACGCACACATGCTTGCA+TGG - chr8_3:11312371-11312390 Msa1276570:intron 55.0%
ATCTCCATGGCATAGCGACC+AGG + chr8_3:11312549-11312568 None:intergenic 55.0%
GATCTTGAGGGAGGCTATCC+TGG + chr8_3:11312608-11312627 None:intergenic 55.0%
TGCGGATGAGATCTTGAGGG+AGG + chr8_3:11312617-11312636 None:intergenic 55.0%
TCCCTCAAGATCTCATCCGC+AGG - chr8_3:11312616-11312635 Msa1276570:intron 55.0%
CCATGTGGTTGTGTTGGGTC+TGG + chr8_3:11313429-11313448 None:intergenic 55.0%
CCAGACCCAACACAACCACA+TGG - chr8_3:11313426-11313445 Msa1276570:CDS 55.0%
CTCATCAACGGGGGACGATT+TGG + chr8_3:11313765-11313784 None:intergenic 55.0%
GCAAAACACCAGCACCGCAA+CGG + chr8_3:11314076-11314095 None:intergenic 55.0%
!! CTTGCTCCTAGTTCTGGACC+TGG - chr8_3:11314107-11314126 Msa1276570:CDS 55.0%
!! GGACCTGGTGTTACATGCAG+AGG - chr8_3:11314122-11314141 Msa1276570:CDS 55.0%
ACCCCTCTGCATGTAACACC+AGG + chr8_3:11314128-11314147 None:intergenic 55.0%
! GTACGGCACCGTCTAGGGTA+TGG + chr8_3:11308323-11308342 None:intergenic 60.0%
!! TACCCTAGACGGTGCCGTAC+TGG - chr8_3:11308323-11308342 Msa1276570:intron 60.0%
! ATTGACCCGTGCGAGAGCAC+GGG + chr8_3:11310171-11310190 None:intergenic 60.0%
CATTGACCCGTGCGAGAGCA+CGG + chr8_3:11310172-11310191 None:intergenic 60.0%
CACTCCTGGTCGCTATGCCA+TGG - chr8_3:11312542-11312561 Msa1276570:intron 60.0%
TTGAGGAACCGTTGCGGTGC+TGG - chr8_3:11314065-11314084 Msa1276570:CDS 60.0%
GGCCAGTACGGCACCGTCTA+GGG + chr8_3:11308328-11308347 None:intergenic 65.0%
CGGCCAGTACGGCACCGTCT+AGG + chr8_3:11308329-11308348 None:intergenic 70.0%
GCGCGACCCGTGCTCTCGCA+CGG - chr8_3:11310162-11310181 Msa1276570:intron 75.0%
CGCGACCCGTGCTCTCGCAC+GGG - chr8_3:11310163-11310182 Msa1276570:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 11306057 11314444 11306057 ID=Msa1276570;Name=Msa1276570
chr8_3 mRNA 11306057 11314444 11306057 ID=Msa1276570-mRNA-1;Parent=Msa1276570;Name=Msa1276570-mRNA-1;_AED=0.04;_eAED=0.04;_QI=234|0.85|0.87|1|1|1|8|275|911
chr8_3 exon 11306057 11307088 11306057 ID=Msa1276570-mRNA-1:exon:4615;Parent=Msa1276570-mRNA-1
chr8_3 exon 11307864 11308082 11307864 ID=Msa1276570-mRNA-1:exon:4614;Parent=Msa1276570-mRNA-1
chr8_3 exon 11308489 11308790 11308489 ID=Msa1276570-mRNA-1:exon:4613;Parent=Msa1276570-mRNA-1
chr8_3 exon 11309432 11309625 11309432 ID=Msa1276570-mRNA-1:exon:4612;Parent=Msa1276570-mRNA-1
chr8_3 exon 11310614 11310949 11310614 ID=Msa1276570-mRNA-1:exon:4611;Parent=Msa1276570-mRNA-1
chr8_3 exon 11312136 11312376 11312136 ID=Msa1276570-mRNA-1:exon:4610;Parent=Msa1276570-mRNA-1
chr8_3 exon 11313388 11313668 11313388 ID=Msa1276570-mRNA-1:exon:4609;Parent=Msa1276570-mRNA-1
chr8_3 exon 11313805 11314444 11313805 ID=Msa1276570-mRNA-1:exon:4608;Parent=Msa1276570-mRNA-1
chr8_3 five_prime_UTR 11314211 11314444 11314211 ID=Msa1276570-mRNA-1:five_prime_utr;Parent=Msa1276570-mRNA-1
chr8_3 CDS 11313805 11314210 11313805 ID=Msa1276570-mRNA-1:cds;Parent=Msa1276570-mRNA-1
chr8_3 CDS 11313388 11313668 11313388 ID=Msa1276570-mRNA-1:cds;Parent=Msa1276570-mRNA-1
chr8_3 CDS 11312136 11312376 11312136 ID=Msa1276570-mRNA-1:cds;Parent=Msa1276570-mRNA-1
chr8_3 CDS 11310614 11310949 11310614 ID=Msa1276570-mRNA-1:cds;Parent=Msa1276570-mRNA-1
chr8_3 CDS 11309432 11309625 11309432 ID=Msa1276570-mRNA-1:cds;Parent=Msa1276570-mRNA-1
chr8_3 CDS 11308489 11308790 11308489 ID=Msa1276570-mRNA-1:cds;Parent=Msa1276570-mRNA-1
chr8_3 CDS 11307864 11308082 11307864 ID=Msa1276570-mRNA-1:cds;Parent=Msa1276570-mRNA-1
chr8_3 CDS 11306332 11307088 11306332 ID=Msa1276570-mRNA-1:cds;Parent=Msa1276570-mRNA-1
chr8_3 three_prime_UTR 11306057 11306331 11306057 ID=Msa1276570-mRNA-1:three_prime_utr;Parent=Msa1276570-mRNA-1
Gene Sequence

>Msa1276570

ATGGCCCTAACAAAAGAATTCATGGGTTCTTCATTGGTAGAGAGACCAATATTTCCTTCTTCTTCACCATGTTTTCAACACAAGAATGGTGGATTCTTGATCAGTCCTGTTTTTGTTCCTTATGGAAACAAGAGAGTTGTTAGGTTGAGAAAATCTGCAAAGTTTCCTGTTGCAGCTATCAGTGAAGATTTGATGAAAAGCTCTTCTTCATCTTCTTCTATATCATCATCTTCTTCTTCTGTTCCTGCTGAAAAACCTGTGAAATTTAAGGTTAGAGCTGTTGTGACTGTGAGGAACAAGATCAAAGAAGATTTCAAAGAGACTTTTGTGAAACATCTTGATGCTTTTACTGATAGGATTGGAAGAAATGTTGTTCTTGAACTTTTTAGCACTGAGATTGATCCAAAAACAAAAGCTGCAAAGAAGACCAATGAAGCAGTGTTGAAGGATTGGTCAAAGAAGACTAATATTAAGGCAGAGAGAGTTAATTACACGGCTGAATTTACGGTTGACTCAAATTTTGGAGAACCAGGAGCTATTACTGTGATAAATAATCATCAGCAAGAATTTTACTTAGAAAATATAACAATTGAAGGATTTGCTACTGGAGCATTTCATTTTCCTTGCAATTCTTGGGTTCAAGCTAGGAAAGATCTTCCTGGAAAGAGAATTTTCTTTTCTAATAAGCCTTATCTACCCGATGATACACCTGCTGGGATTAAACTTTTGAGAGAGAAAGACCTGAAAAATCTGAGAGGTGATGGAAAAGGAGTTAGAAAATTATCAGACAGAATATATGATTATGACACATACAATGATCTTGGAAACCCAGATAAAGGAATTGATCTTGCTAGACCAACTCTTGGAGGATCTGAAATGTATCCATACCCTAGACGGTGCCGTACTGGCCGTGAACCATCTGATACAGATATTACTTGTGAGAGTCGTGTGGAGAAGCCACTTCCTATGTATATACCAAGAGATGAAAGATTTGAGGAATCCAAAATGAACACATTTTCAGTGAAGAGGCTAAAAGGAGTGCTTCATAACTTGCTTCCTGGCCTTAAATCAAGTCTTTCTGCTCAAAACAGAGATTTCAATGAATTCTCAGATGTTGATGGCCTTTATAGTGTTGGACTACTCATTAAGTTGGGTTTGCAAGATGATATTTTGAAGAAACTTCCATTGCCTCACATTGTTAGCAAGATCCAAGAATCCACAAGCCAGGGTATCCTTAAGTATGACATTCCCAAGATTATATCAAAGGATAAATTTGCTTGGTTGAGAGATGATGAATTTGGTCGTCAAGCAATAGCTGGAGTTAATCCTGTTACCATTGAGAGACTTACAGTTTTCCCACCTGTTAGTAAATTAGATCCTGAAATCTATGGTCCACAAGAGTCTGCACTTAAAGAAGAGCACATTTTAAATCAACTTAATGGCATGACCGTCCAAGAGGCAATAGATCAAAATAAGTTGTTTATAATTGATTATCATGACATCTACCTTCCATTTTTGGAAAGGATCAATGCCTTGGATGGTAGAAAATCATATGCCACACGTACCATATACTTCTTGACACCACTTGGCACTCTAAAGCCTGTTGCTATTGAACTTAGCCTGCCTCCATCTGGACCAAACACTCGATCAAAACGTGTAGTTACACCTGCTTTAGATGCAACTACTAATTGGGTGTGGATGCTTGCAAAAGCTCATTTTTGCTCCAATGATGCTGGTGTGCACCAACTTGCCCACCATTGGCAATTAAGTGCAATGCATCCGATTTTCAAGTTATTGGATCCACACATGAGGTACACTTTGGAGATCAATGCTTTAGCTCGACAGAGCTTGATCAATGCAGATGGTGTCATTGAGTCTTGCTTCACTCCTGGTCGCTATGCCATGGAGATTAGTTCTGCTGCTTACAAAACCAACTGGCGTTTTGACCAGGATAGCCTCCCTCAAGATCTCATCCGCAGGGGAATGGCAGTACCAGACCCAACACAACCACATGGTCTAAAGCTAATAATGAAAGATTACCCTTATGCAGAAGATGGTCTTCTAATTTGGTCAGCAATAGAAAATTGGGTCCGCACTTATGTGAACTATTACTACCCAAATCCAAGCCTAATAATCAATGACAGAGAGTTACAAGCTTGGTACTCCGAATCAATCAATGTAGGCCACGCCGATATGAAAGACGAACCATGGTGGCCGAAATTGAACGACAGTGACAATCTTGTCCAAGTCCTAACAATCTTAATTTGGAATGCATCCGCGCAACATGCTGCACTTAATTTCGGACAGTATCCTTATGGAGGTTACGTGCCAAATCGTCCCCCGTTGATGAGAAGATTAATACCGGAAGAAAATGACCCTGAATATACAAGTTTCATATCTGATCCACAAAAGTATTTTCTCAATGCATTGCCTAGTTTGTTGCAAGCTACAAAATATATGGCTGTTGTTGACACGCTTTCGACTCATTCGTCTGACGAAGAGTATTTAGGTGAGAGGCAACAACCTTCGATTTGGACAGGTGATGCTGAGATTGTCGAAGCATTTTATCAATTCTCTGCGGAAATTGGAAAGATTGAGAAGGTGATTAATAGTAGGAATGGTGATAGGAATTTGAGGAACCGTTGCGGTGCTGGTGTTTTGCCTTATGAATTACTTGCTCCTAGTTCTGGACCTGGTGTTACATGCAGAGGGGTTCCAAATAGTGTGTCCACATAA
Protein sequence

>Msa1276570

MALTKEFMGSSLVERPIFPSSSPCFQHKNGGFLISPVFVPYGNKRVVRLRKSAKFPVAAISEDLMKSSSSSSSISSSSSSVPAEKPVKFKVRAVVTVRNKIKEDFKETFVKHLDAFTDRIGRNVVLELFSTEIDPKTKAAKKTNEAVLKDWSKKTNIKAERVNYTAEFTVDSNFGEPGAITVINNHQQEFYLENITIEGFATGAFHFPCNSWVQARKDLPGKRIFFSNKPYLPDDTPAGIKLLREKDLKNLRGDGKGVRKLSDRIYDYDTYNDLGNPDKGIDLARPTLGGSEMYPYPRRCRTGREPSDTDITCESRVEKPLPMYIPRDERFEESKMNTFSVKRLKGVLHNLLPGLKSSLSAQNRDFNEFSDVDGLYSVGLLIKLGLQDDILKKLPLPHIVSKIQESTSQGILKYDIPKIISKDKFAWLRDDEFGRQAIAGVNPVTIERLTVFPPVSKLDPEIYGPQESALKEEHILNQLNGMTVQEAIDQNKLFIIDYHDIYLPFLERINALDGRKSYATRTIYFLTPLGTLKPVAIELSLPPSGPNTRSKRVVTPALDATTNWVWMLAKAHFCSNDAGVHQLAHHWQLSAMHPIFKLLDPHMRYTLEINALARQSLINADGVIESCFTPGRYAMEISSAAYKTNWRFDQDSLPQDLIRRGMAVPDPTQPHGLKLIMKDYPYAEDGLLIWSAIENWVRTYVNYYYPNPSLIINDRELQAWYSESINVGHADMKDEPWWPKLNDSDNLVQVLTILIWNASAQHAALNFGQYPYGGYVPNRPPLMRRLIPEENDPEYTSFISDPQKYFLNALPSLLQATKYMAVVDTLSTHSSDEEYLGERQQPSIWTGDAEIVEAFYQFSAEIGKIEKVINSRNGDRNLRNRCGAGVLPYELLAPSSGPGVTCRGVPNSVST*