AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1314790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1314790 MtrunA17_Chr8g0344201 96.872 927 13 1 1 911 1 927 0.0 1852
Msa1314790 MtrunA17_Chr8g0377101 52.850 842 373 7 89 910 78 915 0.0 904
Msa1314790 MtrunA17_Chr4g0047281 53.025 843 346 11 90 911 82 895 0.0 879
Msa1314790 MtrunA17_Chr3g0118651 47.226 811 395 9 122 910 103 902 0.0 781
Msa1314790 MtrunA17_Chr3g0118641 47.102 811 396 11 122 910 102 901 0.0 773
Msa1314790 MtrunA17_Chr3g0118621 44.905 844 431 11 90 910 32 864 0.0 734
Msa1314790 MtrunA17_Chr1g0191921 44.795 855 445 10 79 910 7 857 0.0 725
Msa1314790 MtrunA17_Chr8g0342881 46.163 834 416 12 100 910 32 855 0.0 723
Msa1314790 MtrunA17_Chr8g0343031 46.285 821 404 13 114 910 57 864 0.0 716
Msa1314790 MtrunA17_Chr8g0343021 46.229 822 405 12 113 910 55 863 0.0 715
Msa1314790 MtrunA17_Chr7g0272791 45.455 847 431 14 91 910 24 866 0.0 715
Msa1314790 MtrunA17_Chr5g0406871 45.687 823 409 14 113 910 57 866 0.0 709
Msa1314790 MtrunA17_Chr2g0329901 46.051 823 404 16 113 910 55 862 0.0 707
Msa1314790 MtrunA17_Chr4g0033171 50.354 707 323 10 225 910 25 724 0.0 706
Msa1314790 MtrunA17_Chr2g0329911 45.089 845 426 15 91 910 29 860 0.0 704
Msa1314790 MtrunA17_Chr8g0342971 45.620 822 412 14 114 910 58 869 0.0 694
Msa1314790 MtrunA17_Chr1g0205611 43.524 857 451 13 84 910 2 855 0.0 691
Msa1314790 MtrunA17_Chr8g0344211 44.336 821 424 12 113 910 57 867 0.0 685
Msa1314790 MtrunA17_Chr8g0343011 44.377 818 423 10 113 910 59 864 0.0 683
Msa1314790 MtrunA17_Chr8g0342921 44.349 814 420 12 120 910 65 868 0.0 679
Msa1314790 MtrunA17_Chr3g0120071 45.642 826 404 13 113 910 49 857 0.0 679
Msa1314790 MtrunA17_Chr8g0342931 46.245 759 376 10 174 910 1 749 0.0 677
Msa1314790 MtrunA17_Chr8g0342891 43.484 821 431 12 113 910 50 860 0.0 674
Msa1314790 MtrunA17_Chr8g0342951 45.067 821 418 12 113 910 57 867 0.0 671
Msa1314790 MtrunA17_Chr8g0342901 42.574 808 401 11 128 910 58 827 0.0 642
Msa1314790 MtrunA17_Chr8g0342981 43.007 765 372 13 177 910 91 822 0.0 602
Msa1314790 MtrunA17_Chr8g0343001 42.112 767 374 10 164 910 90 806 0.0 580
Msa1314790 MtrunA17_Chr8g0342991 42.057 768 373 12 164 910 90 806 0.0 574
Msa1314790 MtrunA17_Chr8g0338451 37.298 866 500 13 65 897 1 856 0.0 562
Msa1314790 MtrunA17_Chr8g0344241 44.810 395 199 4 534 910 67 460 6.08e-111 349
Msa1314790 MtrunA17_Chr6g0471951 36.926 501 259 6 385 866 12 474 5.15e-105 334
Msa1314790 MtrunA17_Chr7g0218231 52.101 119 41 1 578 680 14 132 1.33e-33 126
Msa1314790 MtrunA17_Chr6g0468081 59.551 89 36 0 592 680 1 89 6.04e-31 117
Msa1314790 MtrunA17_Chr4g0047271 58.696 92 38 0 820 911 1 92 7.45e-29 110
Msa1314790 MtrunA17_Chr4g0033181 33.862 189 99 5 44 229 46 211 2.91e-27 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1314790 AT1G17420.1 68.353 929 264 6 1 910 1 918 0.0 1326
Msa1314790 AT1G72520.1 69.198 935 253 11 1 910 1 925 0.0 1312
Msa1314790 AT1G67560.1 50.270 927 417 15 7 910 11 916 0.0 870
Msa1314790 AT3G45140.1 43.203 868 447 15 66 910 51 895 0.0 718
Msa1314790 AT1G55020.1 44.917 846 434 14 90 910 20 858 0.0 714
Msa1314790 AT3G22400.1 43.503 862 450 12 83 910 27 885 0.0 699
Msa1314790 AT3G45140.2 46.053 760 378 11 173 910 4 753 0.0 691

Find 196 sgRNAs with CRISPR-Local

Find 451 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGAAAATGTGTTCATTT+TGG 0.118061 8_4:+13898257 None:intergenic
TTTACGGTTGACTCAAATTT+TGG 0.128121 8_4:-13900543 Msa1314790:CDS
GCAAGATCAATTCCTTTATC+TGG 0.137436 8_4:+13899245 None:intergenic
CTTTAGATGCAACTACTAAT+TGG 0.156046 8_4:-13896066 Msa1314790:CDS
GAGCAGAAAGACTTGATTTA+AGG 0.159246 8_4:+13898196 None:intergenic
ACTCTCTGTCATTGATTATT+AGG 0.161431 8_4:+13894402 None:intergenic
TTTGGTCAGCAATAGAAAAT+TGG 0.164309 8_4:-13894463 Msa1314790:CDS
TATCAATTCTCTGCGGAAAT+TGG 0.203663 8_4:-13893963 Msa1314790:CDS
TTAATTATTAGATACCTTAT+TGG 0.232273 8_4:+13900365 None:intergenic
CAGAAGATGGTCTTCTAATT+TGG 0.251107 8_4:-13894481 Msa1314790:CDS
TCTTGTGGACCATAGATTTC+AGG 0.265813 8_4:+13897000 None:intergenic
AAGTCCTAACAATCTTAATT+TGG 0.267658 8_4:-13894283 Msa1314790:CDS
CATTCCAAATTAAGATTGTT+AGG 0.277408 8_4:+13894279 None:intergenic
TACCCTGGCTTGTGGATTCT+TGG 0.281500 8_4:+13898049 None:intergenic
TCGTCTGACGAAGAGTATTT+AGG 0.285117 8_4:-13894041 Msa1314790:CDS
GAATTACTTGCTCCTAGTTC+TGG 0.295134 8_4:-13893861 Msa1314790:CDS
TTGATTATTAGGCTTGGATT+TGG 0.309327 8_4:+13894413 None:intergenic
TCCTCAAATCTTTCATCTCT+TGG 0.311154 8_4:+13898282 None:intergenic
TCAGGATCTAATTTACTAAC+AGG 0.316657 8_4:+13897018 None:intergenic
GTTGCAAGCTACAAAATATA+TGG 0.317917 8_4:-13894090 Msa1314790:CDS
TTGTCACTGTCGTTCAATTT+CGG 0.321906 8_4:+13894314 None:intergenic
TAATTACACAGCTGAATTTA+CGG 0.322203 8_4:-13900559 Msa1314790:CDS
CCACTCACTTGATATAATCT+TGG 0.323901 8_4:+13898008 None:intergenic
AATGAATTCTCAGATGTTGA+TGG 0.326863 8_4:-13898159 Msa1314790:CDS
GTCAAAGAAGACTAATATTA+AGG 0.327000 8_4:-13900592 Msa1314790:CDS
ATCCTTCAACACTGCTTCAT+TGG 0.329544 8_4:+13900617 None:intergenic
GATATGAAACTTGTATATTC+AGG 0.338356 8_4:+13894152 None:intergenic
GTATTAATCTTCTCATCAAC+GGG 0.342100 8_4:+13894189 None:intergenic
GAAAAGAAAATTCTCTTTCC+AGG 0.342282 8_4:+13900387 None:intergenic
ATGGAAACAAAAGAGTTGTT+AGG 0.343668 8_4:-13901093 Msa1314790:CDS
AATTTCGGACAGTATCCTTA+TGG 0.355580 8_4:-13894233 Msa1314790:CDS
CTGTCATTGATTATTAGGCT+TGG 0.359024 8_4:+13894407 None:intergenic
GGATCCAATAACTTGAAAAT+TGG 0.359274 8_4:+13895525 None:intergenic
CAACATGCTGCACTTAATTT+CGG 0.362410 8_4:-13894248 Msa1314790:CDS
GTAAGTCTCTCAATGGTAAC+AGG 0.380176 8_4:+13897051 None:intergenic
TTAGAAAATATAACAATTGA+AGG 0.381425 8_4:-13900471 Msa1314790:CDS
AGAGGCAACAACCTTCGATT+TGG 0.381540 8_4:-13894016 Msa1314790:CDS
GTGCTTCATAACTTGCTTCC+TGG 0.384287 8_4:-13898219 Msa1314790:CDS
GATCTTGGAAACCCAGATAA+AGG 0.388829 8_4:-13899257 Msa1314790:CDS
GGCCCTAACAAAAGAATTCA+TGG 0.391351 8_4:-13901212 Msa1314790:CDS
CCATGGTTCGTCTTTCATAT+CGG 0.393755 8_4:+13894340 None:intergenic
AGAATTCATGGGTTCTTCAT+TGG 0.395604 8_4:-13901200 Msa1314790:CDS
ATGAATCACTGGTTTCTTTG+AGG 0.398757 8_4:+13901235 None:intergenic
GGTGATGAAGAAGGAAATAT+TGG 0.401225 8_4:+13901169 None:intergenic
TTGAGGAACCGTTGCGGTGC+TGG 0.401483 8_4:-13893897 Msa1314790:CDS
TTGGTCAGCAATAGAAAATT+GGG 0.402009 8_4:-13894462 Msa1314790:CDS
GAACTTAGCCTGCCTCCATC+TGG 0.403989 8_4:-13896124 Msa1314790:CDS
TATGACACATACAATGATCT+TGG 0.412730 8_4:-13899272 Msa1314790:CDS
CACTCACTTGATATAATCTT+GGG 0.413543 8_4:+13898009 None:intergenic
AGAAGACCATCTTCTGCATA+AGG 0.416449 8_4:+13894488 None:intergenic
TCAAAGAAACCAGTGATTCA+TGG 0.418876 8_4:-13901233 Msa1314790:exon
TCTTGGGAATGTCATACTTA+AGG 0.423843 8_4:+13898025 None:intergenic
AAATTAAGATTGTTAGGACT+TGG 0.428810 8_4:+13894285 None:intergenic
TTTAGATGCAACTACTAATT+GGG 0.429267 8_4:-13896065 Msa1314790:CDS
TGAGTAGTCCAACACTATAA+AGG 0.430450 8_4:+13898136 None:intergenic
TTAGACCATGTGGTTGTGTT+GGG 0.432526 8_4:+13894531 None:intergenic
GATCTTGAGGGAGGCTATCC+TGG 0.433367 8_4:+13895358 None:intergenic
TGATTATTAGGCTTGGATTT+GGG 0.433593 8_4:+13894414 None:intergenic
TGTTGGACTACTCATTAAGT+TGG 0.436827 8_4:-13898127 Msa1314790:CDS
AGAAGTGGAACAGTGAGAAA+TGG 0.437846 8_4:+13901341 None:intergenic
TGCTAAGCATTATGGTTGGT+TGG 0.439918 8_4:-13893745 Msa1314790:three_prime_UTR
AGGCTAAGTTCAATTGCAAC+AGG 0.441630 8_4:+13896136 None:intergenic
TCTTTAAGTGCAGACTCTTG+TGG 0.444467 8_4:+13896985 None:intergenic
CAAGATCAATTCCTTTATCT+GGG 0.447942 8_4:+13899246 None:intergenic
ATTGAGTCTTGCTTCACTCC+TGG 0.448673 8_4:-13895435 Msa1314790:CDS
GACCAATGAAGCAGTGTTGA+AGG 0.454038 8_4:-13900619 Msa1314790:CDS
TTTGTTAATTTCTATGAAGG+TGG 0.455730 8_4:+13901287 None:intergenic
CAAGCTAGAAAAGATCTTCC+TGG 0.457008 8_4:-13900405 Msa1314790:CDS
TTGTTAGGGCCATGAATCAC+TGG 0.457945 8_4:+13901224 None:intergenic
TTTGTAGCTTGCAACAAACT+AGG 0.458682 8_4:+13894098 None:intergenic
TCTTTCATTTCTCCAAACAT+AGG 0.459834 8_4:-13901318 Msa1314790:five_prime_UTR
TTGGTGCACACCAGCATCAT+TGG 0.460866 8_4:+13896012 None:intergenic
TTGAGAAGGTGATTGATAGT+AGG 0.462008 8_4:-13893935 Msa1314790:CDS
GCTCTAACCTTAAATTTCAC+TGG 0.462917 8_4:+13900959 None:intergenic
GAAAGACTTGATTTAAGGCC+AGG 0.464489 8_4:+13898201 None:intergenic
ACAATTGAAGGATTTGCTAC+TGG 0.466343 8_4:-13900459 Msa1314790:CDS
AAATTAGATCCTGAAATCTA+TGG 0.468171 8_4:-13897009 Msa1314790:CDS
GTGGCCTACATTGATTGATT+CGG 0.469250 8_4:+13894364 None:intergenic
AACTCCAGCTATTGCTTGAC+GGG 0.470233 8_4:+13897077 None:intergenic
TCTTCACTGATAGCTGCAAC+AGG 0.474972 8_4:+13901049 None:intergenic
GTTGGACTACTCATTAAGTT+GGG 0.477312 8_4:-13898126 Msa1314790:CDS
ACCAAGAGATGAAAGATTTG+AGG 0.477798 8_4:-13898283 Msa1314790:CDS
TTTAGACCATGTGGTTGTGT+TGG 0.478176 8_4:+13894530 None:intergenic
TTTGGAAAGGATCAATGCCT+TGG 0.478720 8_4:-13896221 Msa1314790:CDS
GATCTTGCTAGACCAACTCT+TGG 0.479530 8_4:-13899230 Msa1314790:CDS
ATATGAAACTTGTATATTCA+GGG 0.484202 8_4:+13894153 None:intergenic
CCATTCTTCTGTTGAAAACA+TGG 0.484479 8_4:+13901148 None:intergenic
GAAGATGATGATATAGAAGA+AGG 0.486786 8_4:+13901004 None:intergenic
CCATGTGGTTGTGTTGGGTC+TGG 0.492360 8_4:+13894536 None:intergenic
TCATCTCTTGGTATATACAT+AGG 0.492403 8_4:+13898294 None:intergenic
TAACTCCAGCTATTGCTTGA+CGG 0.493184 8_4:+13897076 None:intergenic
CGGCCAGTACGGCACCGTCT+AGG 0.495310 8_4:+13899185 None:intergenic
ATGAAGCAGTGTTGAAGGAT+TGG 0.497542 8_4:-13900614 Msa1314790:CDS
TACCCTAGACGGTGCCGTAC+TGG 0.498027 8_4:-13899188 Msa1314790:CDS
GAAGACCATCTTCTGCATAA+GGG 0.501628 8_4:+13894489 None:intergenic
TGCACCAACTTGCCCACCAT+TGG 0.505334 8_4:-13895997 Msa1314790:intron
CTCAAAAGTTTAATCCCAGC+AGG 0.506743 8_4:+13899365 None:intergenic
TTTATCACAGTAATTGCTCC+TGG 0.507282 8_4:+13900516 None:intergenic
CATGTTTGCTCCAATGATGC+TGG 0.508665 8_4:-13896022 Msa1314790:CDS
GGCCGTGAACCATCTGATAC+AGG 0.510574 8_4:-13899167 Msa1314790:intron
TACCTGTATCAGATGGTTCA+CGG 0.511896 8_4:+13899165 None:intergenic
CTGCTGCTTACAAAACCAAC+TGG 0.511913 8_4:-13895389 Msa1314790:CDS
GATCCAAGAATCCACAAGCC+AGG 0.513956 8_4:-13898052 Msa1314790:CDS
CTTGCTCCTAGTTCTGGACC+TGG 0.515196 8_4:-13893855 Msa1314790:CDS
GTACGGCACCGTCTAGGGTA+TGG 0.515752 8_4:+13899191 None:intergenic
CTACCCGATGATACACCTGC+TGG 0.515885 8_4:-13899380 Msa1314790:CDS
GGTGTATCATCGGGTAGATA+AGG 0.517991 8_4:+13899386 None:intergenic
GTTGATGGCCTTTATAGTGT+TGG 0.523396 8_4:-13898144 Msa1314790:CDS
CTTAAGGATACCCTGGCTTG+TGG 0.525590 8_4:+13898041 None:intergenic
ATCTCCATGGCATAGCGACC+AGG 0.526081 8_4:+13895417 None:intergenic
GACCTGGTGTTACATGCAGA+GGG 0.527475 8_4:-13893839 Msa1314790:CDS
TGGAGAAATGAAAGAAGAAG+TGG 0.529072 8_4:+13901326 None:intergenic
GGTATTAATCTTCTCATCAA+CGG 0.530886 8_4:+13894188 None:intergenic
TTTGCCCGTCAAGCAATAGC+TGG 0.532353 8_4:-13897081 Msa1314790:CDS
CTTACCAATGGTGGGCAAGT+TGG 0.533372 8_4:+13895993 None:intergenic
ATCCCAGCAGGTGTATCATC+GGG 0.533446 8_4:+13899377 None:intergenic
CACTCCTGGTCGCTATGCCA+TGG 0.533642 8_4:-13895421 Msa1314790:CDS
TGTTTGGTCCAGATGGAGGC+AGG 0.533655 8_4:+13896116 None:intergenic
ATTTCAGATCCTCCAAGAGT+TGG 0.535524 8_4:+13899218 None:intergenic
CTTGCTAGACCAACTCTTGG+AGG 0.537115 8_4:-13899227 Msa1314790:CDS
CAACAACCTTCGATTTGGAC+AGG 0.537155 8_4:-13894011 Msa1314790:CDS
TAATTATTACCTGTATCAGA+TGG 0.538174 8_4:+13899158 None:intergenic
GATTACCCTTATGCAGAAGA+TGG 0.539224 8_4:-13894494 Msa1314790:CDS
GAAAGGATCAATGCCTTGGA+TGG 0.543205 8_4:-13896217 Msa1314790:CDS
GTAACACCAGGTCCAGAACT+AGG 0.543782 8_4:+13893849 None:intergenic
TTGCTAACAATGTGAGGCAA+TGG 0.546196 8_4:+13898075 None:intergenic
CTTGGTATATACATAGGAAG+TGG 0.550676 8_4:+13898300 None:intergenic
TCCACACATGAGGTACACTT+TGG 0.551392 8_4:-13895505 Msa1314790:CDS
GAACAGTGAGAAATGGTTAG+TGG 0.555931 8_4:+13901348 None:intergenic
GGACCTGGTGTTACATGCAG+AGG 0.558911 8_4:-13893840 Msa1314790:CDS
AATCCCAGCAGGTGTATCAT+CGG 0.559593 8_4:+13899376 None:intergenic
ACCTGCGGATGAGATCTTGA+GGG 0.562889 8_4:+13895346 None:intergenic
GGCCAGTACGGCACCGTCTA+GGG 0.564885 8_4:+13899186 None:intergenic
GATCGAGTGTTTGGTCCAGA+TGG 0.566962 8_4:+13896109 None:intergenic
TTAGTAGTTGCATCTAAAGC+AGG 0.568173 8_4:+13896070 None:intergenic
TTTGGCACGTAACCTCCATA+AGG 0.568931 8_4:+13894218 None:intergenic
TGAAAACATGGTGATGAAGA+AGG 0.569969 8_4:+13901160 None:intergenic
GTTGATGAGAAGATTAATAC+CGG 0.571822 8_4:-13894186 Msa1314790:CDS
AAACTGAGAGGTGATGGAAA+AGG 0.571903 8_4:-13899326 Msa1314790:CDS
AAGGTGATTGATAGTAGGAA+TGG 0.572871 8_4:-13893930 Msa1314790:CDS
TCCCTCAAGATCTCATCCGC+AGG 0.574537 8_4:-13895347 Msa1314790:intron
GGATCTAATTTACTAACAGG+TGG 0.574715 8_4:+13897021 None:intergenic
GTGCAGAGGATAAATTTGCT+TGG 0.574838 8_4:-13897119 Msa1314790:intron
GATCTAATTTACTAACAGGT+GGG 0.574850 8_4:+13897022 None:intergenic
GGAATGGCGATAGGAATTTG+AGG 0.578036 8_4:-13893914 Msa1314790:CDS
GAAAACTGTAAGTCTCTCAA+TGG 0.578316 8_4:+13897044 None:intergenic
ATCCTGGTCAAAACGCCAGT+TGG 0.579614 8_4:+13895374 None:intergenic
AAATGTATCCATACCCTAGA+CGG 0.586694 8_4:-13899199 Msa1314790:CDS
ATCCAAGAATCCACAAGCCA+GGG 0.589581 8_4:-13898051 Msa1314790:CDS
TTCGGACAGTATCCTTATGG+AGG 0.590508 8_4:-13894230 Msa1314790:CDS
ATTATTAGCTTTAGACCATG+TGG 0.590586 8_4:+13894521 None:intergenic
TACCCGATGATACACCTGCT+GGG 0.591254 8_4:-13899379 Msa1314790:CDS
TACCTGCGGATGAGATCTTG+AGG 0.594715 8_4:+13895345 None:intergenic
CAGATGGTTCACGGCCAGTA+CGG 0.595137 8_4:+13899174 None:intergenic
AGCAGCAGAACTAATCTCCA+TGG 0.597060 8_4:+13895404 None:intergenic
TGGATCTTGCTAACAATGTG+AGG 0.598996 8_4:+13898069 None:intergenic
GTATGCTTGCTTACCAATGG+TGG 0.599350 8_4:+13895984 None:intergenic
GCATCACCTGTCCAAATCGA+AGG 0.600030 8_4:+13894005 None:intergenic
CAGAGCTTGATCAATGCAGA+TGG 0.602184 8_4:-13895462 Msa1314790:CDS
ATATTACTAGTAGACATTGG+TGG 0.606826 8_4:-13893652 Msa1314790:three_prime_UTR
TCGTTCAATTTCGGCCACCA+TGG 0.607867 8_4:+13894323 None:intergenic
TGTCATACTTAAGGATACCC+TGG 0.608790 8_4:+13898034 None:intergenic
AGGAATTTGAGGAACCGTTG+CGG 0.608855 8_4:-13893903 Msa1314790:CDS
TAAATATTACTAGTAGACAT+TGG 0.610626 8_4:-13893655 Msa1314790:three_prime_UTR
TCCAAAGTGTACCTCATGTG+TGG 0.612282 8_4:+13895504 None:intergenic
CTAGGAGCAAGTAATTCATA+CGG 0.613547 8_4:+13893867 None:intergenic
CGAGTGTTTGGTCCAGATGG+AGG 0.614080 8_4:+13896112 None:intergenic
GCCCTAACAAAAGAATTCAT+GGG 0.614296 8_4:-13901211 Msa1314790:CDS
TTTAAATGGTACCTCTTGGA+CGG 0.616838 8_4:+13896930 None:intergenic
ACCCCTCTGCATGTAACACC+AGG 0.617716 8_4:+13893837 None:intergenic
ATTAAGTGCAGCATGTTGCG+CGG 0.618193 8_4:+13894253 None:intergenic
ATGCAACTACTAATTGGGTG+TGG 0.623131 8_4:-13896060 Msa1314790:CDS
ACGAAGAGTATTTAGGTGAG+AGG 0.628094 8_4:-13894034 Msa1314790:CDS
ATGACAGAGAGTTACAAGCT+TGG 0.632533 8_4:-13894391 Msa1314790:CDS
GAAATGGTTAGTGGTCGTGT+CGG 0.639946 8_4:+13901357 None:intergenic
TACTCCGAATCAATCAATGT+AGG 0.641645 8_4:-13894368 Msa1314790:CDS
GCAAAACACCAGCACCGCAA+CGG 0.641663 8_4:+13893889 None:intergenic
TTGATAGTAGGAATGGCGAT+AGG 0.646766 8_4:-13893923 Msa1314790:CDS
GCTTGAACCCAAGAATTGCA+AGG 0.647001 8_4:+13900423 None:intergenic
GGAAATTGGAAAGATTGAGA+AGG 0.652309 8_4:-13893949 Msa1314790:CDS
TATGCTTGCTTACCAATGGT+GGG 0.656904 8_4:+13895985 None:intergenic
TATTACTTGTGAGAGTCGTG+TGG 0.661476 8_4:-13898328 Msa1314790:CDS
CCGATATGAAAGACGAACCA+TGG 0.663394 8_4:-13894340 Msa1314790:CDS
TAATGGCATGACCGTCCAAG+AGG 0.670114 8_4:-13896941 Msa1314790:intron
TGCGGATGAGATCTTGAGGG+AGG 0.673318 8_4:+13895349 None:intergenic
AGTGAGGAACAAGATCAAAG+AGG 0.677524 8_4:-13900927 Msa1314790:CDS
AGTTATTGGATCCACACATG+AGG 0.685129 8_4:-13895515 Msa1314790:CDS
GTTCGTCTTTCATATCGGCG+TGG 0.688334 8_4:+13894345 None:intergenic
CCAGACCCAACACAACCACA+TGG 0.693358 8_4:-13894536 Msa1314790:CDS
ACCTGGTGTTACATGCAGAG+GGG 0.702111 8_4:-13893838 Msa1314790:CDS
AGTAATAGTTCACATAAGTG+CGG 0.704279 8_4:+13894438 None:intergenic
ATTAATCTTCTCATCAACGG+GGG 0.724917 8_4:+13894191 None:intergenic
ATATGAAAGACGAACCATGG+TGG 0.746586 8_4:-13894337 Msa1314790:CDS
TATTAATCTTCTCATCAACG+GGG 0.754646 8_4:+13894190 None:intergenic
ACAGGCTTTAGAGTACCAAG+TGG 0.757581 8_4:+13896154 None:intergenic
TTAGAGCTGTTGTAACAGTG+AGG 0.760433 8_4:-13900943 Msa1314790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAACTGAATTAAATTAT+TGG - chr8_4:13894305-13894324 Msa1314790:CDS 10.0%
!!! AATAACATTCAATATTTTTA+CGG + chr8_4:13894880-13894899 None:intergenic 10.0%
!! TAACAATAATTATAAAATCA+CGG + chr8_4:13894936-13894955 None:intergenic 10.0%
!! TATTTGTATAAATTTACATT+AGG + chr8_4:13895435-13895454 None:intergenic 10.0%
!! AATTTATACAAATAATAAAG+TGG - chr8_4:13895441-13895460 Msa1314790:CDS 10.0%
!!! ATTTTTCATAAGTAAATTTT+TGG - chr8_4:13897092-13897111 Msa1314790:CDS 10.0%
!!! AAAAAATATAAATTTTCCTT+TGG + chr8_4:13897440-13897459 None:intergenic 10.0%
!!! TTTTTTATATATAAAAGGAA+TGG + chr8_4:13897664-13897683 None:intergenic 10.0%
!! ATATATAAAAAAATTACAAC+TGG - chr8_4:13897672-13897691 Msa1314790:intron 10.0%
!! TATATAAAAAAATTACAACT+GGG - chr8_4:13897673-13897692 Msa1314790:intron 10.0%
!! AGTAATAATTAATAACAAAT+TGG + chr8_4:13897699-13897718 None:intergenic 10.0%
!!! TTTTTTGTTAATTTCTATGA+AGG + chr8_4:13893710-13893729 None:intergenic 15.0%
!! ACTAAAAATTATCAAAATCA+AGG + chr8_4:13894251-13894270 None:intergenic 15.0%
!!! GTTCTTTATGAAATTTTATT+TGG - chr8_4:13894269-13894288 Msa1314790:CDS 15.0%
!! TTAGAAAATATAACAATTGA+AGG - chr8_4:13894520-13894539 Msa1314790:CDS 15.0%
!! TTAATTATTAGATACCTTAT+TGG + chr8_4:13894629-13894648 None:intergenic 15.0%
!!! CCACTTTATTTTTTTATTTA+GGG + chr8_4:13895474-13895493 None:intergenic 15.0%
!!! ACCACTTTATTTTTTTATTT+AGG + chr8_4:13895475-13895494 None:intergenic 15.0%
!!! ATATTCTTTTCGAAATAAAA+TGG - chr8_4:13895542-13895561 Msa1314790:CDS 15.0%
!!! TACAAATCAATTTGATTTTA+AGG - chr8_4:13896387-13896406 Msa1314790:intron 15.0%
!! ATAACTAAACAAAATTGAAT+TGG - chr8_4:13896627-13896646 Msa1314790:intron 15.0%
!!! TTTTGAGATATAATTTTCTT+AGG - chr8_4:13897276-13897295 Msa1314790:intron 15.0%
!!! TTTGAGATATAATTTTCTTA+GGG - chr8_4:13897277-13897296 Msa1314790:intron 15.0%
!!! GAGAAATATGTTTATTTTTA+AGG + chr8_4:13898211-13898230 None:intergenic 15.0%
!! AAAAATAAACATATTTCTCA+TGG - chr8_4:13898212-13898231 Msa1314790:CDS 15.0%
!!! TTTCTTTAAAATCAAGTTAT+AGG + chr8_4:13898554-13898573 None:intergenic 15.0%
!!! AACTCTAAAGTTTAAAATAA+GGG - chr8_4:13899857-13899876 Msa1314790:intron 15.0%
!!! GTTTTATATATATACAAGTG+AGG + chr8_4:13893585-13893604 None:intergenic 20.0%
!! AAAAAAAAAACCTTAGAAGA+AGG - chr8_4:13893727-13893746 Msa1314790:three_prime_UTR 20.0%
!!! ATTTGACTATATGATTTTCT+AGG + chr8_4:13895020-13895039 None:intergenic 20.0%
!! TATAGTCAAATTTATGCATA+TGG - chr8_4:13895029-13895048 Msa1314790:intron 20.0%
!! TCGAAAAATAAAGATAAAGA+GGG + chr8_4:13895168-13895187 None:intergenic 20.0%
!! TTCGAAAAATAAAGATAAAG+AGG + chr8_4:13895169-13895188 None:intergenic 20.0%
!! TCGTTTATTGGATTAAATTA+AGG - chr8_4:13895206-13895225 Msa1314790:intron 20.0%
!!! TTGATTTTATCTAATAAGAG+AGG - chr8_4:13895278-13895297 Msa1314790:intron 20.0%
!! CCCTAAATAAAAAAATAAAG+TGG - chr8_4:13895471-13895490 Msa1314790:CDS 20.0%
!!! GTATTTAAAGTTATATCTTG+TGG - chr8_4:13896152-13896171 Msa1314790:CDS 20.0%
!!! TTTGATGTATTTTCTAACAT+AGG - chr8_4:13896427-13896446 Msa1314790:intron 20.0%
!!! TGCACTTTTTTTTTTTTTTG+AGG - chr8_4:13897010-13897029 Msa1314790:CDS 20.0%
!!! GCACTTTTTTTTTTTTTTGA+GGG - chr8_4:13897011-13897030 Msa1314790:CDS 20.0%
!! AATGTAGAATCAAAATTGTT+AGG + chr8_4:13897144-13897163 None:intergenic 20.0%
!!! GAAATTTTATAGAAAGAAAG+AGG + chr8_4:13897331-13897350 None:intergenic 20.0%
!!! CACATTTTAAATCAACTTAA+TGG - chr8_4:13898033-13898052 Msa1314790:CDS 20.0%
!!! AAGTTTTTGAATGCTTTAAA+TGG + chr8_4:13898078-13898097 None:intergenic 20.0%
!!! TTCAAAAACTTTTTCCTTTT+TGG - chr8_4:13898087-13898106 Msa1314790:CDS 20.0%
!!! TGTTTATTTTTAAGGTACAT+GGG + chr8_4:13898203-13898222 None:intergenic 20.0%
!!! ATGTTTATTTTTAAGGTACA+TGG + chr8_4:13898204-13898223 None:intergenic 20.0%
!! ACTTGACATCAAATTTATAA+TGG - chr8_4:13898247-13898266 Msa1314790:CDS 20.0%
!! ATTTGGATACTTTAAACAAA+TGG - chr8_4:13898304-13898323 Msa1314790:CDS 20.0%
!! ATGCAACTTAAATACTTAAT+TGG - chr8_4:13899293-13899312 Msa1314790:CDS 20.0%
!!! TTTCTTTGCTTATTTTTTCT+CGG - chr8_4:13899361-13899380 Msa1314790:CDS 20.0%
!! TAATATATGATATTTACCTG+CGG + chr8_4:13899663-13899682 None:intergenic 20.0%
!!! TATTTTAAACTTTAGAGTTG+AGG + chr8_4:13899856-13899875 None:intergenic 20.0%
!!! CAACTCTAAAGTTTAAAATA+AGG - chr8_4:13899856-13899875 Msa1314790:intron 20.0%
!! TAATATTTACAATTTCTCTC+AGG + chr8_4:13899994-13900013 None:intergenic 20.0%
!!! TTTCTTTTATGATTTGTTTG+AGG - chr8_4:13900017-13900036 Msa1314790:intron 20.0%
!!! AAACTAAGTTGAATGTAAAA+TGG + chr8_4:13900260-13900279 None:intergenic 20.0%
!!! TAATTGATGTTTGCTTTATT+TGG - chr8_4:13900364-13900383 Msa1314790:intron 20.0%
!!! TTTTCACTTTTTAACATTTC+AGG - chr8_4:13900420-13900439 Msa1314790:CDS 20.0%
!!! TTTCACTTTTTAACATTTCA+GGG - chr8_4:13900421-13900440 Msa1314790:CDS 20.0%
!! ATATGAAACTTGTATATTCA+GGG + chr8_4:13900841-13900860 None:intergenic 20.0%
!!! CTTAAGACTTTTTTTTTATG+TGG + chr8_4:13901194-13901213 None:intergenic 20.0%
!! TAAATATTACTAGTAGACAT+TGG - chr8_4:13901336-13901355 Msa1314790:five_prime_UTR 20.0%
! TTTGTTAATTTCTATGAAGG+TGG + chr8_4:13893707-13893726 None:intergenic 25.0%
! TGAAAAACCAGTGAAATTTA+AGG - chr8_4:13894025-13894044 Msa1314790:CDS 25.0%
! GTCAAAGAAGACTAATATTA+AGG - chr8_4:13894399-13894418 Msa1314790:CDS 25.0%
! TAATTACACAGCTGAATTTA+CGG - chr8_4:13894432-13894451 Msa1314790:CDS 25.0%
!! GAGAATTTTCTTTTCCAATA+AGG - chr8_4:13894612-13894631 Msa1314790:intron 25.0%
! ATTTATCTGTCATCATAACA+TGG - chr8_4:13894679-13894698 Msa1314790:intron 25.0%
!!! CTACTTTTTTTTTCCTTACT+GGG + chr8_4:13894705-13894724 None:intergenic 25.0%
!!! ACTACTTTTTTTTTCCTTAC+TGG + chr8_4:13894706-13894725 None:intergenic 25.0%
!!! TTTTTTCAACGTGAGAAATA+AGG - chr8_4:13894772-13894791 Msa1314790:intron 25.0%
! GGTGAAAATTGAAAGTTAAA+AGG - chr8_4:13894793-13894812 Msa1314790:intron 25.0%
!!! TGTTTTGAAGAATCTTGAAA+AGG - chr8_4:13894828-13894847 Msa1314790:intron 25.0%
!! TTTACGGTAAAATGAACTTT+TGG + chr8_4:13894864-13894883 None:intergenic 25.0%
! ATTAGTATATCACTTTATCG+TGG + chr8_4:13894987-13895006 None:intergenic 25.0%
! ACTACTAGTATTCAATTCAA+CGG + chr8_4:13895112-13895131 None:intergenic 25.0%
!! AATAAAGATAAAGAGGGTAT+TGG + chr8_4:13895162-13895181 None:intergenic 25.0%
! TAATTATTACCTGTATCAGA+TGG + chr8_4:13895836-13895855 None:intergenic 25.0%
! TACAATGACATTTGATATGA+TGG - chr8_4:13896214-13896233 Msa1314790:CDS 25.0%
!!! TATCACACTTTTTTTTCCAA+GGG + chr8_4:13896320-13896339 None:intergenic 25.0%
! TAATATGTTACTATGCTTTG+TGG - chr8_4:13896595-13896614 Msa1314790:intron 25.0%
! CTAAACAAAATTGAATTGGA+TGG - chr8_4:13896631-13896650 Msa1314790:intron 25.0%
!! ATTTCCGCATTACTAAATTT+TGG - chr8_4:13897181-13897200 Msa1314790:intron 25.0%
!! TTTCCGCATTACTAAATTTT+GGG - chr8_4:13897182-13897201 Msa1314790:intron 25.0%
!!! TGAATTACACTTTTTGTCAT+TGG - chr8_4:13897229-13897248 Msa1314790:intron 25.0%
!!! AAATTTTCCTTTGGTGTAAT+TGG + chr8_4:13897431-13897450 None:intergenic 25.0%
! ATGCCATTATAGAATATTCA+TGG + chr8_4:13897501-13897520 None:intergenic 25.0%
! AAATTAGATCCTGAAATCTA+TGG - chr8_4:13897982-13898001 Msa1314790:intron 25.0%
! GTTTGAAAAAACAATTCACA+AGG + chr8_4:13898158-13898177 None:intergenic 25.0%
! TACATGGGAAATGTTATAAT+TGG + chr8_4:13898188-13898207 None:intergenic 25.0%
!! ACTTAAATTGCTTAGTCTTT+AGG + chr8_4:13898356-13898375 None:intergenic 25.0%
!! AAGACTAAGCAATTTAAGTT+AGG - chr8_4:13898357-13898376 Msa1314790:intron 25.0%
!! AGACTAAGCAATTTAAGTTA+GGG - chr8_4:13898358-13898377 Msa1314790:intron 25.0%
!! TTAACAGTGGTAATTTTTGT+TGG + chr8_4:13898512-13898531 None:intergenic 25.0%
! ACAAAAATTACCACTGTTAA+AGG - chr8_4:13898512-13898531 Msa1314790:intron 25.0%
! CCAAAAAAAGAAAAGAAAGT+GGG + chr8_4:13898684-13898703 None:intergenic 25.0%
! TCCAAAAAAAGAAAAGAAAG+TGG + chr8_4:13898685-13898704 None:intergenic 25.0%
!!! TTCTTTTTTTGGAATTTTGC+AGG - chr8_4:13898692-13898711 Msa1314790:intron 25.0%
! TTTAGATGCAACTACTAATT+GGG - chr8_4:13898926-13898945 Msa1314790:intron 25.0%
!! CACTTGTCACATAAAATTTT+AGG + chr8_4:13899068-13899087 None:intergenic 25.0%
! TTTCACATGAAAGACATATT+TGG + chr8_4:13899190-13899209 None:intergenic 25.0%
!! TTCTCGGTGAATTTTTATAT+AGG - chr8_4:13899377-13899396 Msa1314790:CDS 25.0%
! TACGATTCTTTGCAATATTA+AGG - chr8_4:13899920-13899939 Msa1314790:intron 25.0%
! TATCAAAATATAGTTGAGGA+GGG + chr8_4:13899971-13899990 None:intergenic 25.0%
! TTATATGTTTGAGTGCATTT+CGG - chr8_4:13900105-13900124 Msa1314790:intron 25.0%
! AATGTAAAATGGTTTACGTT+TGG + chr8_4:13900249-13900268 None:intergenic 25.0%
!!! TAGGTGTGTATTTGATTTTA+TGG + chr8_4:13900305-13900324 None:intergenic 25.0%
!! TACATGTTAAGAAAAGTGTA+GGG + chr8_4:13900346-13900365 None:intergenic 25.0%
!! TTACATGTTAAGAAAAGTGT+AGG + chr8_4:13900347-13900366 None:intergenic 25.0%
!!! TTCACTTTTTAACATTTCAG+GGG - chr8_4:13900422-13900441 Msa1314790:CDS 25.0%
! AAATTAAGATTGTTAGGACT+TGG + chr8_4:13900709-13900728 None:intergenic 25.0%
! AAGTCCTAACAATCTTAATT+TGG - chr8_4:13900708-13900727 Msa1314790:intron 25.0%
! CATTCCAAATTAAGATTGTT+AGG + chr8_4:13900715-13900734 None:intergenic 25.0%
! GATATGAAACTTGTATATTC+AGG + chr8_4:13900842-13900861 None:intergenic 25.0%
!! TCGGTTTTAATGTAAATAGC+TGG + chr8_4:13893618-13893637 None:intergenic 30.0%
TCTTTCATTTCTCCAAACAT+AGG - chr8_4:13893673-13893692 Msa1314790:three_prime_UTR 30.0%
! ACCCATGAATTCTTTTGTTA+GGG + chr8_4:13893784-13893803 None:intergenic 30.0%
! AACCCATGAATTCTTTTGTT+AGG + chr8_4:13893785-13893804 None:intergenic 30.0%
TTTCCATAAGGAACAAAAAC+AGG + chr8_4:13893885-13893904 None:intergenic 30.0%
!! ACAACTCTTTTGTTTCCATA+AGG + chr8_4:13893897-13893916 None:intergenic 30.0%
ATGGAAACAAAAGAGTTGTT+AGG - chr8_4:13893898-13893917 Msa1314790:CDS 30.0%
GAAGATGATGATATAGAAGA+AGG + chr8_4:13893990-13894009 None:intergenic 30.0%
! ATCTTGATGCTTTTACTGAT+AGG - chr8_4:13894111-13894130 Msa1314790:CDS 30.0%
CACTAAAGAAAAGTCTTACT+TGG + chr8_4:13894182-13894201 None:intergenic 30.0%
!! TTTACGGTTGACTCAAATTT+TGG - chr8_4:13894448-13894467 Msa1314790:CDS 30.0%
! TTCATTTTCCTTGCAATTCT+TGG - chr8_4:13894560-13894579 Msa1314790:intron 30.0%
! TCATTTTCCTTGCAATTCTT+GGG - chr8_4:13894561-13894580 Msa1314790:intron 30.0%
GAAAAGAAAATTCTCTTTCC+AGG + chr8_4:13894607-13894626 None:intergenic 30.0%
GCCAAAAAAGTAGTATCATA+AGG - chr8_4:13894729-13894748 Msa1314790:intron 30.0%
!!! GCCTTATGATACTACTTTTT+TGG + chr8_4:13894733-13894752 None:intergenic 30.0%
ACTAGTACTAGTAGTCTTTA+TGG - chr8_4:13895357-13895376 Msa1314790:CDS 30.0%
TATGACACATACAATGATCT+TGG - chr8_4:13895719-13895738 Msa1314790:intron 30.0%
CAAGATCAATTCCTTTATCT+GGG + chr8_4:13895748-13895767 None:intergenic 30.0%
ATTGCATTGTATCCTTTAGT+AGG - chr8_4:13895895-13895914 Msa1314790:intron 30.0%
TTGCATTGTATCCTTTAGTA+GGG - chr8_4:13895896-13895915 Msa1314790:intron 30.0%
ATAGTTTAACACCCTACTAA+AGG + chr8_4:13895910-13895929 None:intergenic 30.0%
GATAAAATCACAATAGTCGT+TGG + chr8_4:13896012-13896031 None:intergenic 30.0%
TACAATGTGCAACTAAAATG+AGG + chr8_4:13896123-13896142 None:intergenic 30.0%
TTAGTTGCACATTGTATTCT+AGG - chr8_4:13896127-13896146 Msa1314790:CDS 30.0%
!!! CTATCACACTTTTTTTTCCA+AGG + chr8_4:13896321-13896340 None:intergenic 30.0%
! GAAAAAAAAGTGTGATAGCT+TGG - chr8_4:13896323-13896342 Msa1314790:intron 30.0%
TCATCTCTTGGTATATACAT+AGG + chr8_4:13896700-13896719 None:intergenic 30.0%
! CACTGAAAATGTGTTCATTT+TGG + chr8_4:13896737-13896756 None:intergenic 30.0%
AATGAATTCTCAGATGTTGA+TGG - chr8_4:13896832-13896851 Msa1314790:intron 30.0%
CACTCACTTGATATAATCTT+GGG + chr8_4:13896985-13897004 None:intergenic 30.0%
GTCTTCCTTGCTTAAAAAAT+TGG - chr8_4:13897062-13897081 Msa1314790:CDS 30.0%
!!! TGTAGCCAATTTTTTAAGCA+AGG + chr8_4:13897070-13897089 None:intergenic 30.0%
AAGCCCAAAATTTAGTAATG+CGG + chr8_4:13897188-13897207 None:intergenic 30.0%
!! TTACACTTTTTGTCATTGGA+TGG - chr8_4:13897233-13897252 Msa1314790:intron 30.0%
GGTGTAATTGGTATATGATT+TGG + chr8_4:13897419-13897438 None:intergenic 30.0%
TCATATACCAATTACACCAA+AGG - chr8_4:13897421-13897440 Msa1314790:intron 30.0%
TGGCCATGAATATTCTATAA+TGG - chr8_4:13897495-13897514 Msa1314790:intron 30.0%
! TGTAGCACTATCTTTTCATA+TGG + chr8_4:13897533-13897552 None:intergenic 30.0%
! AACCCAAAAAGATGAGTTTT+CGG - chr8_4:13897610-13897629 Msa1314790:intron 30.0%
! AACCGAAAACTCATCTTTTT+GGG + chr8_4:13897615-13897634 None:intergenic 30.0%
ACAATTGATTAGTACAGCTT+TGG + chr8_4:13897746-13897765 None:intergenic 30.0%
AAATTTATCCTCTGCACATT+AGG + chr8_4:13897869-13897888 None:intergenic 30.0%
GATCTAATTTACTAACAGGT+GGG + chr8_4:13897972-13897991 None:intergenic 30.0%
TCAGGATCTAATTTACTAAC+AGG + chr8_4:13897976-13897995 None:intergenic 30.0%
ATGAATGCATTGTACCAAAA+AGG + chr8_4:13898104-13898123 None:intergenic 30.0%
GGAGAAAAACCAGTTAAAAA+TGG - chr8_4:13898459-13898478 Msa1314790:intron 30.0%
!!! ATAGATTCGCCATTTTTAAC+TGG + chr8_4:13898471-13898490 None:intergenic 30.0%
TAAAAATGGCGAATCTATCA+TGG - chr8_4:13898473-13898492 Msa1314790:intron 30.0%
! AATTTTTGTTGGAACCTACT+GGG + chr8_4:13898501-13898520 None:intergenic 30.0%
! TAATTTTTGTTGGAACCTAC+TGG + chr8_4:13898502-13898521 None:intergenic 30.0%
! CCCACTTTCTTTTCTTTTTT+TGG - chr8_4:13898681-13898700 Msa1314790:intron 30.0%
! TGATATCTACCTTCCATTTT+TGG - chr8_4:13898752-13898771 Msa1314790:intron 30.0%
! ATATGATTTTCTACCATCCA+AGG + chr8_4:13898790-13898809 None:intergenic 30.0%
! AAGTGGTGTCAAAAAGTATA+TGG + chr8_4:13898823-13898842 None:intergenic 30.0%
!! ATATACTTTTTGACACCACT+TGG - chr8_4:13898822-13898841 Msa1314790:intron 30.0%
CTTTAGATGCAACTACTAAT+TGG - chr8_4:13898925-13898944 Msa1314790:intron 30.0%
TGTATCAAATTGACATGTGT+CGG - chr8_4:13899161-13899180 Msa1314790:intron 30.0%
!! TATTTAAGTTGCATGTGTCA+AGG + chr8_4:13899287-13899306 None:intergenic 30.0%
CTATGAGCAGACAATATAAA+TGG + chr8_4:13899427-13899446 None:intergenic 30.0%
CATTTATATTGTCTGCTCAT+AGG - chr8_4:13899425-13899444 Msa1314790:intron 30.0%
!!! GCATCCAATTTTCAAGTTAT+TGG - chr8_4:13899462-13899481 Msa1314790:intron 30.0%
GGATCCAATAACTTGAAAAT+TGG + chr8_4:13899469-13899488 None:intergenic 30.0%
!! CTAGGATCTTTAAAACAAAG+CGG + chr8_4:13899703-13899722 None:intergenic 30.0%
GTATCAAAATATAGTTGAGG+AGG + chr8_4:13899972-13899991 None:intergenic 30.0%
CAGGTATCAAAATATAGTTG+AGG + chr8_4:13899975-13899994 None:intergenic 30.0%
TTGGACAAATTCACATATAG+TGG + chr8_4:13900230-13900249 None:intergenic 30.0%
! TTTTTAACATTTCAGGGGAA+TGG - chr8_4:13900427-13900446 Msa1314790:CDS 30.0%
!! ATTATTAGCTTTAGACCATG+TGG + chr8_4:13900473-13900492 None:intergenic 30.0%
TTTGGTCAGCAATAGAAAAT+TGG - chr8_4:13900528-13900547 Msa1314790:CDS 30.0%
TTGGTCAGCAATAGAAAATT+GGG - chr8_4:13900529-13900548 Msa1314790:CDS 30.0%
AGTAATAGTTCACATAAGTG+CGG + chr8_4:13900556-13900575 None:intergenic 30.0%
TGATTATTAGGCTTGGATTT+GGG + chr8_4:13900580-13900599 None:intergenic 30.0%
TTGATTATTAGGCTTGGATT+TGG + chr8_4:13900581-13900600 None:intergenic 30.0%
! ACTCTCTGTCATTGATTATT+AGG + chr8_4:13900592-13900611 None:intergenic 30.0%
TATTAATCTTCTCATCAACG+GGG + chr8_4:13900804-13900823 None:intergenic 30.0%
GTATTAATCTTCTCATCAAC+GGG + chr8_4:13900805-13900824 None:intergenic 30.0%
GGTATTAATCTTCTCATCAA+CGG + chr8_4:13900806-13900825 None:intergenic 30.0%
! GTTGATGAGAAGATTAATAC+CGG - chr8_4:13900805-13900824 Msa1314790:intron 30.0%
! GCATTGAGAAAATACTTTTG+TGG + chr8_4:13900869-13900888 None:intergenic 30.0%
GTTGCAAGCTACAAAATATA+TGG - chr8_4:13900901-13900920 Msa1314790:CDS 30.0%
! AGCATTTTATCAATTCTCTG+CGG - chr8_4:13901021-13901040 Msa1314790:CDS 30.0%
! TTTTATGTGGACACACTATT+TGG + chr8_4:13901181-13901200 None:intergenic 30.0%
! TCACATTTTGCTAAGCATTA+TGG - chr8_4:13901238-13901257 Msa1314790:five_prime_UTR 30.0%
! ATTTTGCTAAGCATTATGGT+TGG - chr8_4:13901242-13901261 Msa1314790:five_prime_UTR 30.0%
ATATTACTAGTAGACATTGG+TGG - chr8_4:13901339-13901358 Msa1314790:five_prime_UTR 30.0%
TGGAGAAATGAAAGAAGAAG+TGG + chr8_4:13893668-13893687 None:intergenic 35.0%
!!! GTGGTTTTGTTTCCTATGTT+TGG + chr8_4:13893688-13893707 None:intergenic 35.0%
!!! GAGGTTTTTTCCTTCTTCTA+AGG + chr8_4:13893740-13893759 None:intergenic 35.0%
!! ATGAATCACTGGTTTCTTTG+AGG + chr8_4:13893759-13893778 None:intergenic 35.0%
TCAAAGAAACCAGTGATTCA+TGG - chr8_4:13893758-13893777 Msa1314790:three_prime_UTR 35.0%
GCCCTAACAAAAGAATTCAT+GGG - chr8_4:13893780-13893799 Msa1314790:three_prime_UTR 35.0%
AGAATTCATGGGTTCTTCAT+TGG - chr8_4:13893791-13893810 Msa1314790:three_prime_UTR 35.0%
GGTGATGAAGAAGGAAATAT+TGG + chr8_4:13893825-13893844 None:intergenic 35.0%
! TGAAAACATGGTGATGAAGA+AGG + chr8_4:13893834-13893853 None:intergenic 35.0%
CCATTCTTCTGTTGAAAACA+TGG + chr8_4:13893846-13893865 None:intergenic 35.0%
! CCATGTTTTCAACAGAAGAA+TGG - chr8_4:13893843-13893862 Msa1314790:CDS 35.0%
! TGTTTTCAACAGAAGAATGG+TGG - chr8_4:13893846-13893865 Msa1314790:CDS 35.0%
!!! AGTCCTGTTTTTGTTCCTTA+TGG - chr8_4:13893879-13893898 Msa1314790:CDS 35.0%
!!! AATTTCACTGGTTTTTCAGC+AGG + chr8_4:13894023-13894042 None:intergenic 35.0%
GCTCTAACCTTAAATTTCAC+TGG + chr8_4:13894035-13894054 None:intergenic 35.0%
! GATGCTTTTACTGATAGGAT+TGG - chr8_4:13894116-13894135 Msa1314790:CDS 35.0%
TTTATCACAGTAATTGCTCC+TGG + chr8_4:13894478-13894497 None:intergenic 35.0%
!! ACAATTGAAGGATTTGCTAC+TGG - chr8_4:13894532-13894551 Msa1314790:CDS 35.0%
! TTATAAAATCACGGACTGCT+TGG + chr8_4:13894927-13894946 None:intergenic 35.0%
TCTAACACTCACTCGTTTAT+TGG - chr8_4:13895194-13895213 Msa1314790:intron 35.0%
TGGAACAATAATCTTACCCT+CGG - chr8_4:13895393-13895412 Msa1314790:CDS 35.0%
TAAATGCTGAATAATGCCGA+GGG + chr8_4:13895412-13895431 None:intergenic 35.0%
CTTAGTCAAAAGATCGAGAA+TGG + chr8_4:13895506-13895525 None:intergenic 35.0%
AAAGACCTGAAAAAACTGAG+AGG - chr8_4:13895653-13895672 Msa1314790:intron 35.0%
GCAAGATCAATTCCTTTATC+TGG + chr8_4:13895749-13895768 None:intergenic 35.0%
AAATGTATCCATACCCTAGA+CGG - chr8_4:13895792-13895811 Msa1314790:intron 35.0%
CATCTAACATCGCACTTTAA+AGG + chr8_4:13895941-13895960 None:intergenic 35.0%
AAGTGCGATGTTAGATGATT+CGG - chr8_4:13895944-13895963 Msa1314790:intron 35.0%
! ACATTTGATATGATGGTGTG+TGG - chr8_4:13896221-13896240 Msa1314790:CDS 35.0%
! CATTTGATATGATGGTGTGT+GGG - chr8_4:13896222-13896241 Msa1314790:CDS 35.0%
ACACACTAAGTATAGAGAAG+TGG + chr8_4:13896265-13896284 None:intergenic 35.0%
TTCTAACATAGGATCTTCTC+TGG - chr8_4:13896438-13896457 Msa1314790:intron 35.0%
! TGTAAAGCATCACAAGATGT+CGG + chr8_4:13896479-13896498 None:intergenic 35.0%
CTTGGTATATACATAGGAAG+TGG + chr8_4:13896694-13896713 None:intergenic 35.0%
ACCAAGAGATGAAAGATTTG+AGG - chr8_4:13896708-13896727 Msa1314790:intron 35.0%
TCCTCAAATCTTTCATCTCT+TGG + chr8_4:13896712-13896731 None:intergenic 35.0%
! TGAACACATTTTCAGTGAAG+AGG - chr8_4:13896740-13896759 Msa1314790:intron 35.0%
! TTTTCAGTGAAGAGGCTAAA+AGG - chr8_4:13896748-13896767 Msa1314790:intron 35.0%
GAGCAGAAAGACTTGATTTA+AGG + chr8_4:13896798-13896817 None:intergenic 35.0%
TGAGTAGTCCAACACTATAA+AGG + chr8_4:13896858-13896877 None:intergenic 35.0%
TGTTGGACTACTCATTAAGT+TGG - chr8_4:13896864-13896883 Msa1314790:intron 35.0%
GTTGGACTACTCATTAAGTT+GGG - chr8_4:13896865-13896884 Msa1314790:intron 35.0%
TCTTGGGAATGTCATACTTA+AGG + chr8_4:13896969-13896988 None:intergenic 35.0%
CCACTCACTTGATATAATCT+TGG + chr8_4:13896986-13897005 None:intergenic 35.0%
CCAAGATTATATCAAGTGAG+TGG - chr8_4:13896983-13897002 Msa1314790:CDS 35.0%
TTTCCCTTTCATTTGCAATG+TGG - chr8_4:13897463-13897482 Msa1314790:intron 35.0%
! GAACCGAAAACTCATCTTTT+TGG + chr8_4:13897616-13897635 None:intergenic 35.0%
GAAAACTGTAAGTCTCTCAA+TGG + chr8_4:13897950-13897969 None:intergenic 35.0%
GGATCTAATTTACTAACAGG+TGG + chr8_4:13897973-13897992 None:intergenic 35.0%
TTTAAATGGTACCTCTTGGA+CGG + chr8_4:13898064-13898083 None:intergenic 35.0%
! ATGCTTTAAATGGTACCTCT+TGG + chr8_4:13898068-13898087 None:intergenic 35.0%
! AATTCACAAGGCACTTGATT+AGG + chr8_4:13898146-13898165 None:intergenic 35.0%
TTATAATGGTCACCAATACG+TGG - chr8_4:13898261-13898280 Msa1314790:CDS 35.0%
AGGCAACTAACTCTTGTATA+TGG - chr8_4:13898438-13898457 Msa1314790:intron 35.0%
!! TCTACCTTCCATTTTTGGAA+AGG - chr8_4:13898757-13898776 Msa1314790:intron 35.0%
TGATCCTTTCCAAAAATGGA+AGG + chr8_4:13898764-13898783 None:intergenic 35.0%
! GCATTGATCCTTTCCAAAAA+TGG + chr8_4:13898768-13898787 None:intergenic 35.0%
! CAAAAAGTATATGGTACGTG+TGG + chr8_4:13898814-13898833 None:intergenic 35.0%
! TTAGTAGTTGCATCTAAAGC+AGG + chr8_4:13898924-13898943 None:intergenic 35.0%
ATTGTATGCTTGCTTACCAA+TGG + chr8_4:13899013-13899032 None:intergenic 35.0%
CGAAAACAATTGATGTACAG+AGG + chr8_4:13899777-13899796 None:intergenic 35.0%
AAAATAAGGGTCTGTGATTG+TGG - chr8_4:13899870-13899889 Msa1314790:intron 35.0%
AAATACACACCTAGCTTCTA+CGG - chr8_4:13900312-13900331 Msa1314790:intron 35.0%
CAGAAGATGGTCTTCTAATT+TGG - chr8_4:13900510-13900529 Msa1314790:CDS 35.0%
! CTGTCATTGATTATTAGGCT+TGG + chr8_4:13900587-13900606 None:intergenic 35.0%
TACTCCGAATCAATCAATGT+AGG - chr8_4:13900623-13900642 Msa1314790:CDS 35.0%
TTGTCACTGTCGTTCAATTT+CGG + chr8_4:13900680-13900699 None:intergenic 35.0%
CAACATGCTGCACTTAATTT+CGG - chr8_4:13900743-13900762 Msa1314790:intron 35.0%
AATTTCGGACAGTATCCTTA+TGG - chr8_4:13900758-13900777 Msa1314790:intron 35.0%
ATTAATCTTCTCATCAACGG+GGG + chr8_4:13900803-13900822 None:intergenic 35.0%
!! TATTCAGGGTCATTTTCTTC+CGG + chr8_4:13900827-13900846 None:intergenic 35.0%
! TTTGTAGCTTGCAACAAACT+AGG + chr8_4:13900896-13900915 None:intergenic 35.0%
TATCAATTCTCTGCGGAAAT+TGG - chr8_4:13901028-13901047 Msa1314790:CDS 35.0%
GGAAATTGGAAAGATTGAGA+AGG - chr8_4:13901042-13901061 Msa1314790:CDS 35.0%
! TTGAGAAGGTGATTGATAGT+AGG - chr8_4:13901056-13901075 Msa1314790:CDS 35.0%
! AAGGTGATTGATAGTAGGAA+TGG - chr8_4:13901061-13901080 Msa1314790:CDS 35.0%
CTAGGAGCAAGTAATTCATA+CGG + chr8_4:13901127-13901146 None:intergenic 35.0%
TGCAATCACTCACTGAAAAA+TGG + chr8_4:13901426-13901445 None:intergenic 35.0%
AGTGAGTGATTGCAAAAATC+TGG - chr8_4:13901432-13901451 Msa1314790:five_prime_UTR 35.0%
GAACAGTGAGAAATGGTTAG+TGG + chr8_4:13893646-13893665 None:intergenic 40.0%
AGAAGTGGAACAGTGAGAAA+TGG + chr8_4:13893653-13893672 None:intergenic 40.0%
GGCCCTAACAAAAGAATTCA+TGG - chr8_4:13893779-13893798 Msa1314790:three_prime_UTR 40.0%
TTAGAGCTGTTGTAACAGTG+AGG - chr8_4:13894048-13894067 Msa1314790:CDS 40.0%
AGTGAGGAACAAGATCAAAG+AGG - chr8_4:13894064-13894083 Msa1314790:CDS 40.0%
ATCCTTCAACACTGCTTCAT+TGG + chr8_4:13894377-13894396 None:intergenic 40.0%
! ATGAAGCAGTGTTGAAGGAT+TGG - chr8_4:13894377-13894396 Msa1314790:CDS 40.0%
!! GACTCAAATTTTGGAGAACC+AGG - chr8_4:13894457-13894476 Msa1314790:CDS 40.0%
CAAGCTAGAAAAGATCTTCC+TGG - chr8_4:13894586-13894605 Msa1314790:intron 40.0%
TAGTCGTCAGGTCAATTCAA+TGG + chr8_4:13895063-13895082 None:intergenic 40.0%
GACTACCTACGGTATGAATT+GGG - chr8_4:13895078-13895097 Msa1314790:intron 40.0%
ACTAGTAGTCTTTATGGTCG+AGG - chr8_4:13895363-13895382 Msa1314790:CDS 40.0%
TTTATGGTCGAGGATGAATG+TGG - chr8_4:13895373-13895392 Msa1314790:CDS 40.0%
GTAAATGCTGAATAATGCCG+AGG + chr8_4:13895413-13895432 None:intergenic 40.0%
CTCAAAAGTTTAATCCCAGC+AGG + chr8_4:13895629-13895648 None:intergenic 40.0%
!!! CATCACCTCTCAGTTTTTTC+AGG + chr8_4:13895661-13895680 None:intergenic 40.0%
CTGAAAAAACTGAGAGGTGA+TGG - chr8_4:13895659-13895678 Msa1314790:intron 40.0%
!! AAACTGAGAGGTGATGGAAA+AGG - chr8_4:13895665-13895684 Msa1314790:intron 40.0%
GATCTTGGAAACCCAGATAA+AGG - chr8_4:13895734-13895753 Msa1314790:intron 40.0%
ATTTCAGATCCTCCAAGAGT+TGG + chr8_4:13895776-13895795 None:intergenic 40.0%
TACCTGTATCAGATGGTTCA+CGG + chr8_4:13895829-13895848 None:intergenic 40.0%
AGTGCGATGTTAGATGATTC+GGG - chr8_4:13895945-13895964 Msa1314790:intron 40.0%
CATCTTGTGATGCTTTACAG+TGG - chr8_4:13896480-13896499 Msa1314790:intron 40.0%
TATTACTTGTGAGAGTCGTG+TGG - chr8_4:13896663-13896682 Msa1314790:intron 40.0%
! GAAAGACTTGATTTAAGGCC+AGG + chr8_4:13896793-13896812 None:intergenic 40.0%
!! GTTGATGGCCTTTATAGTGT+TGG - chr8_4:13896847-13896866 Msa1314790:intron 40.0%
TTGCTAACAATGTGAGGCAA+TGG + chr8_4:13896919-13896938 None:intergenic 40.0%
TGGATCTTGCTAACAATGTG+AGG + chr8_4:13896925-13896944 None:intergenic 40.0%
TGTCATACTTAAGGATACCC+TGG + chr8_4:13896960-13896979 None:intergenic 40.0%
CCACCACATTGCAAATGAAA+GGG + chr8_4:13897469-13897488 None:intergenic 40.0%
CCTTTCATTTGCAATGTGGT+GGG - chr8_4:13897467-13897486 Msa1314790:intron 40.0%
CTTTCATTTGCAATGTGGTG+GGG - chr8_4:13897468-13897487 Msa1314790:intron 40.0%
CCAAACAACATGTTGTAGTG+TGG + chr8_4:13897568-13897587 None:intergenic 40.0%
CCACACTACAACATGTTGTT+TGG - chr8_4:13897565-13897584 Msa1314790:intron 40.0%
! GTGCAGAGGATAAATTTGCT+TGG - chr8_4:13897872-13897891 Msa1314790:intron 40.0%
TAACTCCAGCTATTGCTTGA+CGG + chr8_4:13897918-13897937 None:intergenic 40.0%
GTAAGTCTCTCAATGGTAAC+AGG + chr8_4:13897943-13897962 None:intergenic 40.0%
TCTTGTGGACCATAGATTTC+AGG + chr8_4:13897994-13898013 None:intergenic 40.0%
TCTTTAAGTGCAGACTCTTG+TGG + chr8_4:13898009-13898028 None:intergenic 40.0%
AGGCACTTGATTAGGTAACA+TGG + chr8_4:13898138-13898157 None:intergenic 40.0%
ACTTGAACCAAACCACGTAT+TGG + chr8_4:13898276-13898295 None:intergenic 40.0%
GGTTCAAGTAGTGAGTGATT+TGG - chr8_4:13898287-13898306 Msa1314790:CDS 40.0%
AACATATTGTGTACGTCCTG+AGG - chr8_4:13898418-13898437 Msa1314790:intron 40.0%
ATACAAGAGTTAGTTGCCTC+AGG + chr8_4:13898437-13898456 None:intergenic 40.0%
GTGCATTCAAGAGCAAACAT+AGG + chr8_4:13898592-13898611 None:intergenic 40.0%
TTTGGAAAGGATCAATGCCT+TGG - chr8_4:13898770-13898789 Msa1314790:intron 40.0%
AGGCTAAGTTCAATTGCAAC+AGG + chr8_4:13898858-13898877 None:intergenic 40.0%
!! ACACGTTTTGATCGAGTGTT+TGG + chr8_4:13898894-13898913 None:intergenic 40.0%
ATGCAACTACTAATTGGGTG+TGG - chr8_4:13898931-13898950 Msa1314790:intron 40.0%
TATGCTTGCTTACCAATGGT+GGG + chr8_4:13899009-13899028 None:intergenic 40.0%
AAGACATTTACACTCACACG+TGG - chr8_4:13899092-13899111 Msa1314790:intron 40.0%
GTGAAAAGACATTGCGACAT+AGG - chr8_4:13899204-13899223 Msa1314790:CDS 40.0%
AGTTATTGGATCCACACATG+AGG - chr8_4:13899476-13899495 Msa1314790:intron 40.0%
AATGCGCCTCAAATGGTAAA+AGG + chr8_4:13899803-13899822 None:intergenic 40.0%
TTAGACCATGTGGTTGTGTT+GGG + chr8_4:13900463-13900482 None:intergenic 40.0%
TTTAGACCATGTGGTTGTGT+TGG + chr8_4:13900464-13900483 None:intergenic 40.0%
GATTACCCTTATGCAGAAGA+TGG - chr8_4:13900497-13900516 Msa1314790:CDS 40.0%
GAAGACCATCTTCTGCATAA+GGG + chr8_4:13900505-13900524 None:intergenic 40.0%
AGAAGACCATCTTCTGCATA+AGG + chr8_4:13900506-13900525 None:intergenic 40.0%
ATGACAGAGAGTTACAAGCT+TGG - chr8_4:13900600-13900619 Msa1314790:CDS 40.0%
! GTGGCCTACATTGATTGATT+CGG + chr8_4:13900630-13900649 None:intergenic 40.0%
CCATGGTTCGTCTTTCATAT+CGG + chr8_4:13900654-13900673 None:intergenic 40.0%
ATATGAAAGACGAACCATGG+TGG - chr8_4:13900654-13900673 Msa1314790:intron 40.0%
!! TCGTCTGACGAAGAGTATTT+AGG - chr8_4:13900950-13900969 Msa1314790:CDS 40.0%
!! ACGAAGAGTATTTAGGTGAG+AGG - chr8_4:13900957-13900976 Msa1314790:CDS 40.0%
! TTGATAGTAGGAATGGCGAT+AGG - chr8_4:13901068-13901087 Msa1314790:CDS 40.0%
GAATTACTTGCTCCTAGTTC+TGG - chr8_4:13901130-13901149 Msa1314790:CDS 40.0%
TGCTAAGCATTATGGTTGGT+TGG - chr8_4:13901246-13901265 Msa1314790:five_prime_UTR 40.0%
GAAATGGTTAGTGGTCGTGT+CGG + chr8_4:13893637-13893656 None:intergenic 45.0%
TTGTTAGGGCCATGAATCAC+TGG + chr8_4:13893770-13893789 None:intergenic 45.0%
TCTTCACTGATAGCTGCAAC+AGG + chr8_4:13893945-13893964 None:intergenic 45.0%
! GACCAATGAAGCAGTGTTGA+AGG - chr8_4:13894372-13894391 Msa1314790:CDS 45.0%
GCTTGAACCCAAGAATTGCA+AGG + chr8_4:13894571-13894590 None:intergenic 45.0%
CATCATAACATGGCCCAGTA+AGG - chr8_4:13894689-13894708 Msa1314790:intron 45.0%
!! AATCACGGACTGCTTGGTTT+TGG + chr8_4:13894921-13894940 None:intergenic 45.0%
CAGGTCAATTCAATGGTGCT+TGG + chr8_4:13895056-13895075 None:intergenic 45.0%
ATTGACCTGACGACTACCTA+CGG - chr8_4:13895067-13895086 Msa1314790:intron 45.0%
CGACTACCTACGGTATGAAT+TGG - chr8_4:13895077-13895096 Msa1314790:intron 45.0%
CTTTGCCCAATTCATACCGT+AGG + chr8_4:13895086-13895105 None:intergenic 45.0%
GGTGTATCATCGGGTAGATA+AGG + chr8_4:13895608-13895627 None:intergenic 45.0%
AATCCCAGCAGGTGTATCAT+CGG + chr8_4:13895618-13895637 None:intergenic 45.0%
GATCTTGCTAGACCAACTCT+TGG - chr8_4:13895761-13895780 Msa1314790:intron 45.0%
ATTTCGCTGCAAATCTCCCT+TGG - chr8_4:13896301-13896320 Msa1314790:intron 45.0%
ATCTTCTCTGGACCAACTTG+TGG - chr8_4:13896450-13896469 Msa1314790:intron 45.0%
TCTTCTCTGGACCAACTTGT+GGG - chr8_4:13896451-13896470 Msa1314790:intron 45.0%
! GATGCTTTACAGTGGTGTCA+TGG - chr8_4:13896488-13896507 Msa1314790:intron 45.0%
!! GTGCTTCATAACTTGCTTCC+TGG - chr8_4:13896772-13896791 Msa1314790:intron 45.0%
ATCCAAGAATCCACAAGCCA+GGG - chr8_4:13896940-13896959 Msa1314790:intron 45.0%
CCCTTTCATTTGCAATGTGG+TGG - chr8_4:13897466-13897485 Msa1314790:intron 45.0%
CCCACCACATTGCAAATGAA+AGG + chr8_4:13897470-13897489 None:intergenic 45.0%
AACTCCAGCTATTGCTTGAC+GGG + chr8_4:13897917-13897936 None:intergenic 45.0%
ATGGTCACCAATACGTGGTT+TGG - chr8_4:13898266-13898285 Msa1314790:CDS 45.0%
GGTCAGAGATTTGACTACTC+AGG - chr8_4:13898325-13898344 Msa1314790:CDS 45.0%
AATCTATCATGGTGCCCAGT+AGG - chr8_4:13898484-13898503 Msa1314790:intron 45.0%
GAAAGGATCAATGCCTTGGA+TGG - chr8_4:13898774-13898793 Msa1314790:intron 45.0%
!! ACAGGCTTTAGAGTACCAAG+TGG + chr8_4:13898840-13898859 None:intergenic 45.0%
CATGTTTGCTCCAATGATGC+TGG - chr8_4:13898969-13898988 Msa1314790:intron 45.0%
GTATGCTTGCTTACCAATGG+TGG + chr8_4:13899010-13899029 None:intergenic 45.0%
TCCACACATGAGGTACACTT+TGG - chr8_4:13899486-13899505 Msa1314790:intron 45.0%
TCCAAAGTGTACCTCATGTG+TGG + chr8_4:13899490-13899509 None:intergenic 45.0%
CAGAGCTTGATCAATGCAGA+TGG - chr8_4:13899529-13899548 Msa1314790:intron 45.0%
ATTGAGTCTTGCTTCACTCC+TGG - chr8_4:13899556-13899575 Msa1314790:intron 45.0%
AGCAGCAGAACTAATCTCCA+TGG + chr8_4:13899590-13899609 None:intergenic 45.0%
! CTGCTGCTTACAAAACCAAC+TGG - chr8_4:13899602-13899621 Msa1314790:intron 45.0%
CGAAACTCACACACGCAATA+CGG - chr8_4:13899725-13899744 Msa1314790:intron 45.0%
! TCGCTGCCTTTTACCATTTG+AGG - chr8_4:13899794-13899813 Msa1314790:intron 45.0%
! TACCATTTGAGGCGCATTGT+TGG - chr8_4:13899805-13899824 Msa1314790:intron 45.0%
AACCAACAATGCGCCTCAAA+TGG + chr8_4:13899810-13899829 None:intergenic 45.0%
!!! TTGAGGAGGGTTTTAGAGAG+TGG + chr8_4:13899958-13899977 None:intergenic 45.0%
! GTCTCTTTTCCGTAGAAGCT+AGG + chr8_4:13900324-13900343 None:intergenic 45.0%
CCGATATGAAAGACGAACCA+TGG - chr8_4:13900651-13900670 Msa1314790:intron 45.0%
ATTAAGTGCAGCATGTTGCG+CGG + chr8_4:13900741-13900760 None:intergenic 45.0%
TTCGGACAGTATCCTTATGG+AGG - chr8_4:13900761-13900780 Msa1314790:intron 45.0%
TTTGGCACGTAACCTCCATA+AGG + chr8_4:13900776-13900795 None:intergenic 45.0%
AGAGGCAACAACCTTCGATT+TGG - chr8_4:13900975-13900994 Msa1314790:CDS 45.0%
!! CAACAACCTTCGATTTGGAC+AGG - chr8_4:13900980-13900999 Msa1314790:CDS 45.0%
GGAATGGCGATAGGAATTTG+AGG - chr8_4:13901077-13901096 Msa1314790:CDS 45.0%
AGGAATTTGAGGAACCGTTG+CGG - chr8_4:13901088-13901107 Msa1314790:CDS 45.0%
!!! GTAATTTTTTTATATATAAA+AGG + chr8_4:13897669-13897688 None:intergenic 5.0%
!! TAAATATCATATATTAATTT+CGG - chr8_4:13899667-13899686 Msa1314790:intron 5.0%
TCATACCGTAGGTAGTCGTC+AGG + chr8_4:13895075-13895094 None:intergenic 50.0%
TACCCGATGATACACCTGCT+GGG - chr8_4:13895612-13895631 Msa1314790:intron 50.0%
ATCCCAGCAGGTGTATCATC+GGG + chr8_4:13895617-13895636 None:intergenic 50.0%
CTTGCTAGACCAACTCTTGG+AGG - chr8_4:13895764-13895783 Msa1314790:intron 50.0%
GATCCAAGAATCCACAAGCC+AGG - chr8_4:13896939-13896958 Msa1314790:intron 50.0%
! TACCCTGGCTTGTGGATTCT+TGG + chr8_4:13896945-13896964 None:intergenic 50.0%
! CTTAAGGATACCCTGGCTTG+TGG + chr8_4:13896953-13896972 None:intergenic 50.0%
! TTGCAATGTGGTGGGGTCTT+TGG - chr8_4:13897475-13897494 Msa1314790:intron 50.0%
CTCATGTGCCTAATGTGCAG+AGG - chr8_4:13897858-13897877 Msa1314790:intron 50.0%
TTTGCCCGTCAAGCAATAGC+TGG - chr8_4:13897910-13897929 Msa1314790:intron 50.0%
TAATGGCATGACCGTCCAAG+AGG - chr8_4:13898050-13898069 Msa1314790:CDS 50.0%
GATCGAGTGTTTGGTCCAGA+TGG + chr8_4:13898885-13898904 None:intergenic 50.0%
TTGGTGCACACCAGCATCAT+TGG + chr8_4:13898982-13899001 None:intergenic 50.0%
!! CTTACCAATGGTGGGCAAGT+TGG + chr8_4:13899001-13899020 None:intergenic 50.0%
!! AACCAACTGGCGTTTTGACC+AGG - chr8_4:13899615-13899634 Msa1314790:intron 50.0%
ATCCTGGTCAAAACGCCAGT+TGG + chr8_4:13899620-13899639 None:intergenic 50.0%
ACCTGCGGATGAGATCTTGA+GGG + chr8_4:13899648-13899667 None:intergenic 50.0%
TACCTGCGGATGAGATCTTG+AGG + chr8_4:13899649-13899668 None:intergenic 50.0%
GCGTGTGTGAGTTTCGTTCT+AGG + chr8_4:13899721-13899740 None:intergenic 50.0%
GTTCGTCTTTCATATCGGCG+TGG + chr8_4:13900649-13900668 None:intergenic 50.0%
TCGTTCAATTTCGGCCACCA+TGG + chr8_4:13900671-13900690 None:intergenic 50.0%
GCATCACCTGTCCAAATCGA+AGG + chr8_4:13900989-13901008 None:intergenic 50.0%
GTAACACCAGGTCCAGAACT+AGG + chr8_4:13901145-13901164 None:intergenic 50.0%
!! GACCTGGTGTTACATGCAGA+GGG - chr8_4:13901152-13901171 Msa1314790:CDS 50.0%
!! ACCTGGTGTTACATGCAGAG+GGG - chr8_4:13901153-13901172 Msa1314790:CDS 50.0%
CTACCCGATGATACACCTGC+TGG - chr8_4:13895611-13895630 Msa1314790:intron 55.0%
CAGATGGTTCACGGCCAGTA+CGG + chr8_4:13895820-13895839 None:intergenic 55.0%
GGCCGTGAACCATCTGATAC+AGG - chr8_4:13895824-13895843 Msa1314790:intron 55.0%
! AGATGTCGGTGCCCACAAGT+TGG + chr8_4:13896465-13896484 None:intergenic 55.0%
GAACTTAGCCTGCCTCCATC+TGG - chr8_4:13898867-13898886 Msa1314790:intron 55.0%
TGTTTGGTCCAGATGGAGGC+AGG + chr8_4:13898878-13898897 None:intergenic 55.0%
CGAGTGTTTGGTCCAGATGG+AGG + chr8_4:13898882-13898901 None:intergenic 55.0%
TGCACCAACTTGCCCACCAT+TGG - chr8_4:13898994-13899013 Msa1314790:intron 55.0%
GCTACGCACACATGCTTGCA+TGG - chr8_4:13899399-13899418 Msa1314790:intron 55.0%
ATCTCCATGGCATAGCGACC+AGG + chr8_4:13899577-13899596 None:intergenic 55.0%
GATCTTGAGGGAGGCTATCC+TGG + chr8_4:13899636-13899655 None:intergenic 55.0%
TGCGGATGAGATCTTGAGGG+AGG + chr8_4:13899645-13899664 None:intergenic 55.0%
TCCCTCAAGATCTCATCCGC+AGG - chr8_4:13899644-13899663 Msa1314790:intron 55.0%
CCATGTGGTTGTGTTGGGTC+TGG + chr8_4:13900458-13900477 None:intergenic 55.0%
CCAGACCCAACACAACCACA+TGG - chr8_4:13900455-13900474 Msa1314790:CDS 55.0%
CTCATCAACGGGGGACGATT+TGG + chr8_4:13900794-13900813 None:intergenic 55.0%
GCAAAACACCAGCACCGCAA+CGG + chr8_4:13901105-13901124 None:intergenic 55.0%
!! CTTGCTCCTAGTTCTGGACC+TGG - chr8_4:13901136-13901155 Msa1314790:CDS 55.0%
!! GGACCTGGTGTTACATGCAG+AGG - chr8_4:13901151-13901170 Msa1314790:CDS 55.0%
ACCCCTCTGCATGTAACACC+AGG + chr8_4:13901157-13901176 None:intergenic 55.0%
! GTACGGCACCGTCTAGGGTA+TGG + chr8_4:13895803-13895822 None:intergenic 60.0%
!! TACCCTAGACGGTGCCGTAC+TGG - chr8_4:13895803-13895822 Msa1314790:intron 60.0%
CACTCCTGGTCGCTATGCCA+TGG - chr8_4:13899570-13899589 Msa1314790:intron 60.0%
TTGAGGAACCGTTGCGGTGC+TGG - chr8_4:13901094-13901113 Msa1314790:CDS 60.0%
GGCCAGTACGGCACCGTCTA+GGG + chr8_4:13895808-13895827 None:intergenic 65.0%
CGGCCAGTACGGCACCGTCT+AGG + chr8_4:13895809-13895828 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 13893538 13901475 13893538 ID=Msa1314790;Name=Msa1314790
chr8_4 mRNA 13893538 13901475 13893538 ID=Msa1314790-mRNA-1;Parent=Msa1314790;Name=Msa1314790-mRNA-1;_AED=0.03;_eAED=0.03;_QI=239|0.85|0.87|1|1|1|8|277|911
chr8_4 exon 13893538 13894571 13893538 ID=Msa1314790-mRNA-1:exon:5241;Parent=Msa1314790-mRNA-1
chr8_4 exon 13895348 13895566 13895348 ID=Msa1314790-mRNA-1:exon:5240;Parent=Msa1314790-mRNA-1
chr8_4 exon 13895998 13896299 13895998 ID=Msa1314790-mRNA-1:exon:5239;Parent=Msa1314790-mRNA-1
chr8_4 exon 13896942 13897135 13896942 ID=Msa1314790-mRNA-1:exon:5238;Parent=Msa1314790-mRNA-1
chr8_4 exon 13898016 13898351 13898016 ID=Msa1314790-mRNA-1:exon:5237;Parent=Msa1314790-mRNA-1
chr8_4 exon 13899168 13899408 13899168 ID=Msa1314790-mRNA-1:exon:5236;Parent=Msa1314790-mRNA-1
chr8_4 exon 13900380 13900660 13900380 ID=Msa1314790-mRNA-1:exon:5235;Parent=Msa1314790-mRNA-1
chr8_4 exon 13900831 13901475 13900831 ID=Msa1314790-mRNA-1:exon:5234;Parent=Msa1314790-mRNA-1
chr8_4 five_prime_UTR 13901237 13901475 13901237 ID=Msa1314790-mRNA-1:five_prime_utr;Parent=Msa1314790-mRNA-1
chr8_4 CDS 13900831 13901236 13900831 ID=Msa1314790-mRNA-1:cds;Parent=Msa1314790-mRNA-1
chr8_4 CDS 13900380 13900660 13900380 ID=Msa1314790-mRNA-1:cds;Parent=Msa1314790-mRNA-1
chr8_4 CDS 13899168 13899408 13899168 ID=Msa1314790-mRNA-1:cds;Parent=Msa1314790-mRNA-1
chr8_4 CDS 13898016 13898351 13898016 ID=Msa1314790-mRNA-1:cds;Parent=Msa1314790-mRNA-1
chr8_4 CDS 13896942 13897135 13896942 ID=Msa1314790-mRNA-1:cds;Parent=Msa1314790-mRNA-1
chr8_4 CDS 13895998 13896299 13895998 ID=Msa1314790-mRNA-1:cds;Parent=Msa1314790-mRNA-1
chr8_4 CDS 13895348 13895566 13895348 ID=Msa1314790-mRNA-1:cds;Parent=Msa1314790-mRNA-1
chr8_4 CDS 13893815 13894571 13893815 ID=Msa1314790-mRNA-1:cds;Parent=Msa1314790-mRNA-1
chr8_4 three_prime_UTR 13893538 13893814 13893538 ID=Msa1314790-mRNA-1:three_prime_utr;Parent=Msa1314790-mRNA-1
Gene Sequence

>Msa1314790

ATGGCCCTAACAAAAGAATTCATGGGTTCTTCATTGGTAGAGAGACCAATATTTCCTTCTTCATCACCATGTTTTCAACAGAAGAATGGTGGATTCTTGATCAGTCCTGTTTTTGTTCCTTATGGAAACAAAAGAGTTGTTAGGTTGAGAAAATCTGCAAAGTTTCCTGTTGCAGCTATCAGTGAAGATTTGATGAAAAACTCTTCTTCACCTTCTTCTATATCATCATCTTCTTCTTCTGTTCCTGCTGAAAAACCAGTGAAATTTAAGGTTAGAGCTGTTGTAACAGTGAGGAACAAGATCAAAGAGGATTTCAAAGAGACTTTTGTGAAACATCTTGATGCTTTTACTGATAGGATTGGAAGAAATGTTGTTCTTGAACTTTTTAGCACTGAGATTGATCCAAAAACAAAAGCTGCAAAGAAGACCAATGAAGCAGTGTTGAAGGATTGGTCAAAGAAGACTAATATTAAGGCAGAGAGAGTTAATTACACAGCTGAATTTACGGTTGACTCAAATTTTGGAGAACCAGGAGCAATTACTGTGATAAATAATCATCAACAAGAATTTTACTTAGAAAATATAACAATTGAAGGATTTGCTACTGGAGCATTTCATTTTCCTTGCAATTCTTGGGTTCAAGCTAGAAAAGATCTTCCTGGAAAGAGAATTTTCTTTTCCAATAAGCCTTATCTACCCGATGATACACCTGCTGGGATTAAACTTTTGAGAGAGAAAGACCTGAAAAAACTGAGAGGTGATGGAAAAGGAGTTAGAAAATTATCTGACAGAATATATGATTATGACACATACAATGATCTTGGAAACCCAGATAAAGGAATTGATCTTGCTAGACCAACTCTTGGAGGATCTGAAATGTATCCATACCCTAGACGGTGCCGTACTGGCCGTGAACCATCTGATACAGATATTACTTGTGAGAGTCGTGTGGAGAAGCCACTTCCTATGTATATACCAAGAGATGAAAGATTTGAGGAATCCAAAATGAACACATTTTCAGTGAAGAGGCTAAAAGGAGTGCTTCATAACTTGCTTCCTGGCCTTAAATCAAGTCTTTCTGCTCAAAACAGAGATTTCAATGAATTCTCAGATGTTGATGGCCTTTATAGTGTTGGACTACTCATTAAGTTGGGTTTGCAAGATGATATTTTGAAGAAACTTCCATTGCCTCACATTGTTAGCAAGATCCAAGAATCCACAAGCCAGGGTATCCTTAAGTATGACATTCCCAAGATTATATCAAAGGATAAATTTGCTTGGTTGAGAGATGATGAATTTGCCCGTCAAGCAATAGCTGGAGTTAATCCTGTTACCATTGAGAGACTTACAGTTTTCCCACCTGTTAGTAAATTAGATCCTGAAATCTATGGTCCACAAGAGTCTGCACTTAAAGAAGAGCACATTTTAAATCAACTTAATGGCATGACCGTCCAAGAGGCAATAGATCAAAATAAGTTGTTTATAATTGATTATCATGATATCTACCTTCCATTTTTGGAAAGGATCAATGCCTTGGATGGTAGAAAATCATATGCCACACGTACCATATACTTTTTGACACCACTTGGTACTCTAAAGCCTGTTGCAATTGAACTTAGCCTGCCTCCATCTGGACCAAACACTCGATCAAAACGTGTAGTTACACCTGCTTTAGATGCAACTACTAATTGGGTGTGGATGCTTGCAAAAGCTCATGTTTGCTCCAATGATGCTGGTGTGCACCAACTTGCCCACCATTGGCAATTAAGTGCAATGCATCCAATTTTCAAGTTATTGGATCCACACATGAGGTACACTTTGGAGATCAATGCTTTAGCTCGACAGAGCTTGATCAATGCAGATGGTGTCATTGAGTCTTGCTTCACTCCTGGTCGCTATGCCATGGAGATTAGTTCTGCTGCTTACAAAACCAACTGGCGTTTTGACCAGGATAGCCTCCCTCAAGATCTCATCCGCAGGGGAATGGCAGTACCAGACCCAACACAACCACATGGTCTAAAGCTAATAATGAAAGATTACCCTTATGCAGAAGATGGTCTTCTAATTTGGTCAGCAATAGAAAATTGGGTCCGCACTTATGTGAACTATTACTACCCAAATCCAAGCCTAATAATCAATGACAGAGAGTTACAAGCTTGGTACTCCGAATCAATCAATGTAGGCCACGCCGATATGAAAGACGAACCATGGTGGCCGAAATTGAACGACAGTGACAATCTTGTCCAAGTCCTAACAATCTTAATTTGGAATGCATCCGCGCAACATGCTGCACTTAATTTCGGACAGTATCCTTATGGAGGTTACGTGCCAAATCGTCCCCCGTTGATGAGAAGATTAATACCGGAAGAAAATGACCCTGAATATACAAGTTTCATATCAGATCCACAAAAGTATTTTCTCAATGCATTGCCTAGTTTGTTGCAAGCTACAAAATATATGGCTGTTGTTGACACGCTTTCGACTCATTCGTCTGACGAAGAGTATTTAGGTGAGAGGCAACAACCTTCGATTTGGACAGGTGATGCTGAGATTGTCGAAGCATTTTATCAATTCTCTGCGGAAATTGGAAAGATTGAGAAGGTGATTGATAGTAGGAATGGCGATAGGAATTTGAGGAACCGTTGCGGTGCTGGTGTTTTGCCGTATGAATTACTTGCTCCTAGTTCTGGACCTGGTGTTACATGCAGAGGGGTTCCAAATAGTGTGTCCACATAA
Protein sequence

>Msa1314790

MALTKEFMGSSLVERPIFPSSSPCFQQKNGGFLISPVFVPYGNKRVVRLRKSAKFPVAAISEDLMKNSSSPSSISSSSSSVPAEKPVKFKVRAVVTVRNKIKEDFKETFVKHLDAFTDRIGRNVVLELFSTEIDPKTKAAKKTNEAVLKDWSKKTNIKAERVNYTAEFTVDSNFGEPGAITVINNHQQEFYLENITIEGFATGAFHFPCNSWVQARKDLPGKRIFFSNKPYLPDDTPAGIKLLREKDLKKLRGDGKGVRKLSDRIYDYDTYNDLGNPDKGIDLARPTLGGSEMYPYPRRCRTGREPSDTDITCESRVEKPLPMYIPRDERFEESKMNTFSVKRLKGVLHNLLPGLKSSLSAQNRDFNEFSDVDGLYSVGLLIKLGLQDDILKKLPLPHIVSKIQESTSQGILKYDIPKIISKDKFAWLRDDEFARQAIAGVNPVTIERLTVFPPVSKLDPEIYGPQESALKEEHILNQLNGMTVQEAIDQNKLFIIDYHDIYLPFLERINALDGRKSYATRTIYFLTPLGTLKPVAIELSLPPSGPNTRSKRVVTPALDATTNWVWMLAKAHVCSNDAGVHQLAHHWQLSAMHPIFKLLDPHMRYTLEINALARQSLINADGVIESCFTPGRYAMEISSAAYKTNWRFDQDSLPQDLIRRGMAVPDPTQPHGLKLIMKDYPYAEDGLLIWSAIENWVRTYVNYYYPNPSLIINDRELQAWYSESINVGHADMKDEPWWPKLNDSDNLVQVLTILIWNASAQHAALNFGQYPYGGYVPNRPPLMRRLIPEENDPEYTSFISDPQKYFLNALPSLLQATKYMAVVDTLSTHSSDEEYLGERQQPSIWTGDAEIVEAFYQFSAEIGKIEKVIDSRNGDRNLRNRCGAGVLPYELLAPSSGPGVTCRGVPNSVST*