Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238300 | XP_013444881.1 | 95.582 | 498 | 22 | 0 | 1 | 498 | 1 | 498 | 0.0 | 1002 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238300 | sp|Q8NBL1|PGLT1_HUMAN | 25.770 | 357 | 226 | 13 | 95 | 432 | 54 | 390 | 3.53e-24 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0187830 | Msa1238300 | 0.805282 | 1.439337e-49 | -8.615850e-47 |
| Msa1238300 | Msa1319130 | 0.800034 | 1.741937e-48 | -8.615850e-47 |
| Msa1238300 | Msa1450880 | 0.853984 | 1.664071e-61 | -8.615850e-47 |
| Msa0870060 | Msa1238300 | 0.801901 | 7.233572e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238300 | MtrunA17_Chr8g0349371 | 95.582 | 498 | 22 | 0 | 1 | 498 | 1 | 498 | 0.0 | 1002 |
| Msa1238300 | MtrunA17_Chr8g0349361 | 75.977 | 512 | 105 | 5 | 3 | 498 | 6 | 515 | 0.0 | 808 |
| Msa1238300 | MtrunA17_Chr5g0397701 | 64.792 | 409 | 135 | 3 | 87 | 493 | 99 | 500 | 0.0 | 572 |
| Msa1238300 | MtrunA17_Chr6g0471441 | 58.333 | 444 | 171 | 6 | 59 | 495 | 69 | 505 | 0.0 | 549 |
| Msa1238300 | MtrunA17_Chr8g0349241 | 56.481 | 432 | 183 | 5 | 55 | 484 | 60 | 488 | 0.0 | 520 |
| Msa1238300 | MtrunA17_Chr7g0247251 | 57.067 | 375 | 158 | 3 | 91 | 464 | 24 | 396 | 1.87e-163 | 468 |
| Msa1238300 | MtrunA17_Chr7g0247261 | 52.174 | 414 | 186 | 6 | 58 | 464 | 35 | 443 | 1.32e-162 | 468 |
| Msa1238300 | MtrunA17_Chr3g0104841 | 45.257 | 369 | 192 | 6 | 95 | 462 | 106 | 465 | 1.05e-116 | 351 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238300 | AT2G45830.4 | 64.073 | 437 | 150 | 4 | 61 | 492 | 81 | 515 | 0.0 | 595 |
| Msa1238300 | AT2G45830.1 | 64.073 | 437 | 150 | 4 | 61 | 492 | 81 | 515 | 0.0 | 595 |
| Msa1238300 | AT3G61270.1 | 63.466 | 427 | 153 | 3 | 68 | 493 | 69 | 493 | 0.0 | 577 |
| Msa1238300 | AT5G23850.1 | 59.502 | 442 | 169 | 7 | 62 | 496 | 101 | 539 | 0.0 | 561 |
| Msa1238300 | AT2G45830.3 | 68.449 | 374 | 115 | 3 | 118 | 490 | 1 | 372 | 0.0 | 545 |
| Msa1238300 | AT2G45830.6 | 68.449 | 374 | 115 | 3 | 118 | 490 | 1 | 372 | 0.0 | 545 |
| Msa1238300 | AT2G45830.2 | 68.449 | 374 | 115 | 3 | 118 | 490 | 1 | 372 | 0.0 | 545 |
| Msa1238300 | AT2G45830.5 | 68.449 | 374 | 115 | 3 | 118 | 490 | 1 | 372 | 0.0 | 545 |
| Msa1238300 | AT3G48980.2 | 54.484 | 446 | 191 | 6 | 61 | 496 | 99 | 542 | 0.0 | 530 |
| Msa1238300 | AT3G48980.1 | 54.484 | 446 | 191 | 6 | 61 | 496 | 93 | 536 | 0.0 | 530 |
| Msa1238300 | AT3G61270.2 | 65.957 | 376 | 126 | 2 | 118 | 493 | 1 | 374 | 0.0 | 526 |
| Msa1238300 | AT1G63420.1 | 59.155 | 426 | 163 | 5 | 77 | 492 | 151 | 575 | 0.0 | 525 |
| Msa1238300 | AT3G61280.1 | 52.830 | 424 | 197 | 1 | 75 | 495 | 111 | 534 | 8.90e-168 | 484 |
| Msa1238300 | AT2G45840.1 | 51.220 | 451 | 208 | 5 | 52 | 496 | 75 | 519 | 1.96e-166 | 481 |
| Msa1238300 | AT3G61290.1 | 52.064 | 436 | 201 | 3 | 65 | 496 | 18 | 449 | 4.71e-163 | 469 |
| Msa1238300 | AT1G63420.2 | 61.564 | 307 | 112 | 3 | 77 | 377 | 151 | 457 | 3.68e-135 | 399 |
| Msa1238300 | AT1G07220.1 | 46.447 | 394 | 200 | 7 | 95 | 487 | 115 | 498 | 9.62e-128 | 381 |
| Msa1238300 | AT3G61280.2 | 54.545 | 242 | 107 | 1 | 75 | 313 | 111 | 352 | 3.96e-93 | 288 |
Find 112 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTTCATTTATGACTTTA+AGG | 0.040113 | 8_2:+18334641 | None:intergenic |
| GCAAGTAACTTTAGCTTTCT+TGG | 0.142798 | 8_2:+18337590 | None:intergenic |
| CAATAATGCAGGTAGAAATT+TGG | 0.165888 | 8_2:-18333262 | Msa1238300:CDS |
| TTTACTATTTCGATAGTATT+TGG | 0.182065 | 8_2:+18333019 | None:intergenic |
| ATAGAGTACCTTATGCTTAT+TGG | 0.187130 | 8_2:-18334597 | Msa1238300:CDS |
| CTAAAACCATGGAGAGAAAA+AGG | 0.213324 | 8_2:-18336881 | Msa1238300:CDS |
| TCTTTCCAGATTGGTCCTTT+TGG | 0.237147 | 8_2:-18336565 | Msa1238300:CDS |
| CCCTGGCAAGTTACCTGATT+TGG | 0.253051 | 8_2:-18336705 | Msa1238300:CDS |
| TGGTTCCCTTACAACATTAT+TGG | 0.275707 | 8_2:-18333809 | Msa1238300:CDS |
| ATTTAAGAAGAAAATCTTCT+TGG | 0.282497 | 8_2:+18337020 | None:intergenic |
| GAAGAAAATCTTCTTGGTCT+TGG | 0.291982 | 8_2:+18337026 | None:intergenic |
| TTTGTCCCTCATACTTTAGA+TGG | 0.317721 | 8_2:-18336916 | Msa1238300:CDS |
| AATAATGCAGGTAGAAATTT+GGG | 0.322510 | 8_2:-18333261 | Msa1238300:CDS |
| CATTTACTATTGTCTCTAAT+AGG | 0.329746 | 8_2:+18333786 | None:intergenic |
| GTCTGCAACAAGTTCCTTAT+AGG | 0.337722 | 8_2:-18337694 | Msa1238300:five_prime_UTR |
| TCTTAAATTTGCTGTGGAAT+GGG | 0.339721 | 8_2:-18333757 | Msa1238300:CDS |
| AACTTGGAGCAGAGGAACTA+TGG | 0.356682 | 8_2:+18337731 | Msa1238310:CDS |
| AGATAAGCCTGTTGTTCCTT+TGG | 0.358733 | 8_2:-18336663 | Msa1238300:CDS |
| TCAAGTTGAATCCTCCTATA+AGG | 0.363259 | 8_2:+18337680 | None:intergenic |
| ACATATCTGAAACACTTCTA+TGG | 0.367489 | 8_2:-18337645 | Msa1238300:CDS |
| ATGTAACATTGCATTGTAGA+AGG | 0.368839 | 8_2:+18334539 | None:intergenic |
| CTCTTAAATTTGCTGTGGAA+TGG | 0.371549 | 8_2:-18333758 | Msa1238300:CDS |
| ACATGTTGCAAAAGGCAAAA+AGG | 0.375767 | 8_2:-18336847 | Msa1238300:CDS |
| TTTGATAGTTGATAGACATT+TGG | 0.376339 | 8_2:-18333050 | Msa1238300:three_prime_UTR |
| AATAGGCCAATAATGTTGTA+AGG | 0.379435 | 8_2:+18333803 | None:intergenic |
| TAGATATTGTCTTTCCAGAT+TGG | 0.382916 | 8_2:-18336574 | Msa1238300:CDS |
| GGTCTTGGAGTCTGTCTTTG+TGG | 0.390236 | 8_2:+18337041 | None:intergenic |
| CAAGAGATGTGTTTACTTTG+TGG | 0.399333 | 8_2:-18336754 | Msa1238300:CDS |
| TGTCTAGTTGGAGCAACATA+AGG | 0.400620 | 8_2:+18334565 | None:intergenic |
| TCTAAATCTAAAGGATCATA+TGG | 0.408752 | 8_2:+18333311 | None:intergenic |
| AAATTTGGGAAGATGAATAT+TGG | 0.417589 | 8_2:-18333247 | Msa1238300:CDS |
| GGTTTCAACAAATCCAACTT+AGG | 0.419553 | 8_2:-18334335 | Msa1238300:CDS |
| ATGTTACATTAGAAAATGAT+TGG | 0.422826 | 8_2:-18334525 | Msa1238300:CDS |
| GGATTTGTTGAAACCTTGAT+TGG | 0.424372 | 8_2:+18334343 | None:intergenic |
| ATGGATCCATCTAAAGTATG+AGG | 0.427483 | 8_2:+18336910 | None:intergenic |
| AACTTATCCAAAGGAACAAC+AGG | 0.427577 | 8_2:+18336656 | None:intergenic |
| AAAGGAGGCGGTGAAGCATT+TGG | 0.431656 | 8_2:+18336626 | None:intergenic |
| GTTCCTTTGGATAAGTTTCA+AGG | 0.433005 | 8_2:-18336650 | Msa1238300:CDS |
| AAGAGATGTGTTTACTTTGT+GGG | 0.437198 | 8_2:-18336753 | Msa1238300:CDS |
| AGCTAAAGTTACTTGCTTAG+TGG | 0.442735 | 8_2:-18337583 | Msa1238300:CDS |
| ACAGCTCCTCTAGGTATAGT+TGG | 0.445298 | 8_2:+18333452 | None:intergenic |
| TCCAAATCAGGTAACTTGCC+AGG | 0.447409 | 8_2:+18336704 | None:intergenic |
| ATCCTTAAAGTCATAAATGA+AGG | 0.447803 | 8_2:-18334643 | Msa1238300:CDS |
| ATTAATGACATGTGATGTAA+TGG | 0.449605 | 8_2:-18333411 | Msa1238300:CDS |
| TCAAACATAAGTTCCAAATC+AGG | 0.450342 | 8_2:+18336692 | None:intergenic |
| AGTACATTGGTCCCCTAAGT+TGG | 0.460514 | 8_2:+18334322 | None:intergenic |
| ACATGGTTGTTGAGATTTGT+TGG | 0.465017 | 8_2:+18336938 | None:intergenic |
| ACATTTCAAGCTTGTGGTTG+TGG | 0.465359 | 8_2:-18336819 | Msa1238300:CDS |
| GTTTCAACAAATCCAACTTA+GGG | 0.466088 | 8_2:-18334334 | Msa1238300:CDS |
| ATCTAACAGGCACAGTCAAT+AGG | 0.470737 | 8_2:-18333578 | Msa1238300:intron |
| GTCTAGTTGGAGCAACATAA+GGG | 0.474459 | 8_2:+18334566 | None:intergenic |
| CATCCCCAAAAGGACCAATC+TGG | 0.479726 | 8_2:+18336560 | None:intergenic |
| AGTCTGTCTTTGTGGATGAA+TGG | 0.483457 | 8_2:+18337049 | None:intergenic |
| TTTCTTCTTAAATGCATACA+AGG | 0.487305 | 8_2:-18337010 | Msa1238300:CDS |
| TGGTAACAAAAGGAGGTTCA+TGG | 0.489195 | 8_2:-18333387 | Msa1238300:CDS |
| CACAAGGAACATGTTGCAAA+AGG | 0.493524 | 8_2:-18336855 | Msa1238300:CDS |
| AGGTACAAGATATACATAGA+AGG | 0.497660 | 8_2:-18333927 | Msa1238300:CDS |
| GCACAGTCAATAGGAGAGGC+TGG | 0.500817 | 8_2:-18333569 | Msa1238300:CDS |
| GTACCTTATGCTTATTGGAA+GGG | 0.503766 | 8_2:-18334592 | Msa1238300:CDS |
| TACCTTATGCTTATTGGAAG+GGG | 0.503930 | 8_2:-18334591 | Msa1238300:CDS |
| CATGGTTGTTGAGATTTGTT+GGG | 0.508593 | 8_2:+18336939 | None:intergenic |
| AAAAGCTAATTCAATAATGC+AGG | 0.515286 | 8_2:-18333273 | Msa1238300:CDS |
| TTCCCCTTCCAATAAGCATA+AGG | 0.515441 | 8_2:+18334589 | None:intergenic |
| GAGGTTCATGGAAGAGTCAA+TGG | 0.516306 | 8_2:-18333375 | Msa1238300:CDS |
| CTTAAATTTGCTGTGGAATG+GGG | 0.516885 | 8_2:-18333756 | Msa1238300:CDS |
| AGATGTATGTGGAAAAGTAT+AGG | 0.517281 | 8_2:-18336790 | Msa1238300:CDS |
| TAGGGGACCAATGTACTCAT+AGG | 0.518424 | 8_2:-18334316 | Msa1238300:intron |
| TTCAAGCTTGTGGTTGTGGA+TGG | 0.520851 | 8_2:-18336815 | Msa1238300:CDS |
| ACAAGATATACATAGAAGGA+TGG | 0.528604 | 8_2:-18333923 | Msa1238300:CDS |
| CAAATTTCCACAGCTCCTCT+AGG | 0.531706 | 8_2:+18333443 | None:intergenic |
| TGCAACAAGTTCCTTATAGG+AGG | 0.532634 | 8_2:-18337691 | Msa1238300:five_prime_UTR |
| AGTACCTTATGCTTATTGGA+AGG | 0.533255 | 8_2:-18334593 | Msa1238300:CDS |
| GGGCAACAATCACACTCATA+AGG | 0.533532 | 8_2:-18333736 | Msa1238300:intron |
| CACCTCTCTTAAATTTGCTG+TGG | 0.534214 | 8_2:-18333763 | Msa1238300:CDS |
| TATACATAGAAGGATGGGCT+TGG | 0.537356 | 8_2:-18333917 | Msa1238300:CDS |
| GAACACTCTCATATACATAC+AGG | 0.538416 | 8_2:-18334503 | Msa1238300:intron |
| GACAGCACATTTCAAGCTTG+TGG | 0.541915 | 8_2:-18336825 | Msa1238300:CDS |
| TAGGACTTACCATCCCCAAA+AGG | 0.555947 | 8_2:+18336550 | None:intergenic |
| TTAATGACATGTGATGTAAT+GGG | 0.559079 | 8_2:-18333410 | Msa1238300:CDS |
| TGGATACATGAATCCAATCA+AGG | 0.560032 | 8_2:-18334356 | Msa1238300:CDS |
| GGTCCTTGAAACTTATCCAA+AGG | 0.560298 | 8_2:+18336647 | None:intergenic |
| AGAGATGTGTTTACTTTGTG+GGG | 0.562176 | 8_2:-18336752 | Msa1238300:CDS |
| CAAGATATACATAGAAGGAT+GGG | 0.562972 | 8_2:-18333922 | Msa1238300:CDS |
| GGACTTTACATATAATGTCA+TGG | 0.570834 | 8_2:+18333860 | None:intergenic |
| AACTATACCTAGAGGAGCTG+TGG | 0.578398 | 8_2:-18333450 | Msa1238300:CDS |
| CAGAGACAAATATAAAGCCA+TGG | 0.587033 | 8_2:-18334672 | Msa1238300:CDS |
| TCCATGAAGATCTAAAACCA+TGG | 0.587436 | 8_2:-18336892 | Msa1238300:CDS |
| TCTAAAGGATCATATGGAGG+AGG | 0.587652 | 8_2:+18333317 | None:intergenic |
| ATAGGCCAATAATGTTGTAA+GGG | 0.591312 | 8_2:+18333804 | None:intergenic |
| CCAAATCAGGTAACTTGCCA+GGG | 0.599314 | 8_2:+18336705 | None:intergenic |
| CATGGAAGAGTCAATGGTGA+AGG | 0.603386 | 8_2:-18333369 | Msa1238300:CDS |
| TATGGAGGAGGAATAGTGCA+TGG | 0.604369 | 8_2:+18333329 | None:intergenic |
| TCCTTAAAGTCATAAATGAA+GGG | 0.609424 | 8_2:-18334642 | Msa1238300:CDS |
| ATGTAATGGGTGGTAACAAA+AGG | 0.619846 | 8_2:-18333397 | Msa1238300:CDS |
| TGGATCCATCTAAAGTATGA+GGG | 0.622254 | 8_2:+18336911 | None:intergenic |
| CAATATCTAAACAAAGGAGG+CGG | 0.622297 | 8_2:+18336614 | None:intergenic |
| TAATGGGTGGTAACAAAAGG+AGG | 0.630766 | 8_2:-18333394 | Msa1238300:CDS |
| TCTGAACAATATCTAAACAA+AGG | 0.632316 | 8_2:+18336608 | None:intergenic |
| TGGTAGCAAATTCATACAAG+AGG | 0.633461 | 8_2:-18333549 | Msa1238300:CDS |
| TCACCTACCTATGAGTACAT+TGG | 0.633848 | 8_2:+18334309 | None:intergenic |
| TTCCACAGCAAATTTAAGAG+AGG | 0.634434 | 8_2:+18333761 | None:intergenic |
| GAACAATATCTAAACAAAGG+AGG | 0.640570 | 8_2:+18336611 | None:intergenic |
| CAATTATTGAGAATGTACCC+TGG | 0.642475 | 8_2:-18336722 | Msa1238300:CDS |
| TGTGGATGGAAAGATGTATG+TGG | 0.643809 | 8_2:-18336801 | Msa1238300:CDS |
| AGGTACTCTATCCTTCCACT+TGG | 0.660422 | 8_2:+18334609 | None:intergenic |
| TAAAGTATGAGGGACAAACA+TGG | 0.661067 | 8_2:+18336921 | None:intergenic |
| AAATCTAAAGGATCATATGG+AGG | 0.667890 | 8_2:+18333314 | None:intergenic |
| TTTCAACAAATCCAACTTAG+GGG | 0.669976 | 8_2:-18334333 | Msa1238300:CDS |
| ACAGGCACAGTCAATAGGAG+AGG | 0.670596 | 8_2:-18333573 | Msa1238300:intron |
| TTCAAACCAACTATACCTAG+AGG | 0.684725 | 8_2:-18333458 | Msa1238300:CDS |
| TATCTGAAACACTTCTATGG+CGG | 0.699694 | 8_2:-18337642 | Msa1238300:CDS |
| ATGACATGTGATGTAATGGG+TGG | 0.745292 | 8_2:-18333407 | Msa1238300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATAAAAATAAAAATTA+GGG | + | chr8_2:18335922-18335941 | None:intergenic | 0.0% |
| !! | TAAATAAATAAATAAAAAAA+AGG | + | chr8_2:18337565-18337584 | None:intergenic | 0.0% |
| !!! | TTTATTTATTTTTTTATAAT+AGG | - | chr8_2:18337581-18337600 | Msa1238300:CDS | 0.0% |
| !!! | TTTAATTATGTTGATTTTAA+TGG | - | chr8_2:18333353-18333372 | Msa1238300:CDS | 10.0% |
| !!! | ATTTTTTTATAGAAAAATGT+TGG | - | chr8_2:18333601-18333620 | Msa1238300:intron | 10.0% |
| !! | AACTTTGATAAAAATATATA+GGG | + | chr8_2:18335691-18335710 | None:intergenic | 10.0% |
| !! | ACACTATTATTATATAACAA+TGG | - | chr8_2:18333325-18333344 | Msa1238300:CDS | 15.0% |
| !! | CACTATTATTATATAACAAT+GGG | - | chr8_2:18333326-18333345 | Msa1238300:CDS | 15.0% |
| !!! | ATTTCAATATTAGATTTTCT+TGG | + | chr8_2:18333642-18333661 | None:intergenic | 15.0% |
| !! | ATTGCAAATTTATATTATTC+AGG | - | chr8_2:18334671-18334690 | Msa1238300:CDS | 15.0% |
| !! | TTATTCAATGAATCTAAAAA+AGG | + | chr8_2:18334757-18334776 | None:intergenic | 15.0% |
| !!! | TAAGAAAATATTCCTTTTTT+AGG | + | chr8_2:18334831-18334850 | None:intergenic | 15.0% |
| !! | TTAAACTAGGTTATTTAAAA+TGG | - | chr8_2:18335131-18335150 | Msa1238300:intron | 15.0% |
| !!! | TAAACTAGGTTATTTAAAAT+GGG | - | chr8_2:18335132-18335151 | Msa1238300:intron | 15.0% |
| !! | TAATTAACCCAAATATATAA+TGG | + | chr8_2:18335396-18335415 | None:intergenic | 15.0% |
| !! | CAAAACTGTAAATATTTATA+AGG | + | chr8_2:18335429-18335448 | None:intergenic | 15.0% |
| !!! | AAAGTGTGATTTTATTTTAT+AGG | - | chr8_2:18335616-18335635 | Msa1238300:intron | 15.0% |
| !!! | AAGTGTGATTTTATTTTATA+GGG | - | chr8_2:18335617-18335636 | Msa1238300:intron | 15.0% |
| !! | CAACTTTGATAAAAATATAT+AGG | + | chr8_2:18335692-18335711 | None:intergenic | 15.0% |
| !!! | CTATATATTTTTATCAAAGT+TGG | - | chr8_2:18335690-18335709 | Msa1238300:intron | 15.0% |
| !! | ATAAAAATAAAAATTAGGGT+CGG | + | chr8_2:18335918-18335937 | None:intergenic | 15.0% |
| !! | TAATATTCTTTACTTAAAAC+AGG | - | chr8_2:18336050-18336069 | Msa1238300:intron | 15.0% |
| !! | AATATTCTTTACTTAAAACA+GGG | - | chr8_2:18336051-18336070 | Msa1238300:intron | 15.0% |
| !!! | TATTTTTTTCCCATTAATTA+TGG | - | chr8_2:18336266-18336285 | Msa1238300:intron | 15.0% |
| !! | TCAAAGTAAAATAAAATCAT+AGG | + | chr8_2:18337082-18337101 | None:intergenic | 15.0% |
| !! | AATGTAACAAAAAAATTTCA+TGG | + | chr8_2:18337126-18337145 | None:intergenic | 15.0% |
| !! | AAAAATTCTTCTAAATCTAA+AGG | + | chr8_2:18337447-18337466 | None:intergenic | 15.0% |
| !!! | TTAGATTTAGAAGAATTTTT+AGG | - | chr8_2:18337447-18337466 | Msa1238300:intron | 15.0% |
| !!! | TAGATTTAGAAGAATTTTTA+GGG | - | chr8_2:18337448-18337467 | Msa1238300:intron | 15.0% |
| !!! | TTGTTTGTTGATTTATTCAA+TGG | - | chr8_2:18333403-18333422 | Msa1238300:CDS | 20.0% |
| !! | AATGTTCACATAATGATAAA+GGG | + | chr8_2:18333479-18333498 | None:intergenic | 20.0% |
| !! | AAATGTTCACATAATGATAA+AGG | + | chr8_2:18333480-18333499 | None:intergenic | 20.0% |
| !! | TTGTGACATATAATTGATAT+AGG | - | chr8_2:18333546-18333565 | Msa1238300:CDS | 20.0% |
| !! | ATTTAAGAAGAAAATCTTCT+TGG | + | chr8_2:18333729-18333748 | None:intergenic | 20.0% |
| !! | GATAAAAAGAAGTTATGTTT+AGG | + | chr8_2:18334218-18334237 | None:intergenic | 20.0% |
| !! | GAAGTAGTATATAAATAGAA+AGG | + | chr8_2:18334240-18334259 | None:intergenic | 20.0% |
| !! | TTATAGAAAATAAGCTTAGA+TGG | - | chr8_2:18334379-18334398 | Msa1238300:intron | 20.0% |
| !!! | TATTTTCTTATATTTGAGAC+CGG | - | chr8_2:18334841-18334860 | Msa1238300:intron | 20.0% |
| !!! | TTAAGTTTAAAATTGTGCAT+TGG | + | chr8_2:18334962-18334981 | None:intergenic | 20.0% |
| !!! | ATAGTACACATTTTTAAACT+AGG | - | chr8_2:18335118-18335137 | Msa1238300:intron | 20.0% |
| !!! | AGACATTGAAAAGTTTTATA+AGG | - | chr8_2:18335191-18335210 | Msa1238300:intron | 20.0% |
| !! | AATAACCACCATTATATATT+TGG | - | chr8_2:18335385-18335404 | Msa1238300:intron | 20.0% |
| !! | ATAACCACCATTATATATTT+GGG | - | chr8_2:18335386-18335405 | Msa1238300:intron | 20.0% |
| !!! | ACATTTTCTTTAAGCATTTT+AGG | - | chr8_2:18335493-18335512 | Msa1238300:intron | 20.0% |
| !!! | CATTTTCTTTAAGCATTTTA+GGG | - | chr8_2:18335494-18335513 | Msa1238300:intron | 20.0% |
| !! | ACAAAATTCTGAATATTTGT+AGG | - | chr8_2:18335647-18335666 | Msa1238300:intron | 20.0% |
| !! | CAAAATTCTGAATATTTGTA+GGG | - | chr8_2:18335648-18335667 | Msa1238300:intron | 20.0% |
| !! | TATAGGGTTAATTAAGTAAA+TGG | + | chr8_2:18335675-18335694 | None:intergenic | 20.0% |
| !! | ATGTTACATTAGAAAATGAT+TGG | - | chr8_2:18336221-18336240 | Msa1238300:intron | 20.0% |
| !! | CAAATTCATCCATAATTAAT+GGG | + | chr8_2:18336278-18336297 | None:intergenic | 20.0% |
| !! | ACAAATTCATCCATAATTAA+TGG | + | chr8_2:18336279-18336298 | None:intergenic | 20.0% |
| !!! | ATTCCTTTGATGTTAATTTT+AGG | + | chr8_2:18336302-18336321 | None:intergenic | 20.0% |
| !! | GTTAAGAGTTAGTTATATAT+CGG | + | chr8_2:18336749-18336768 | None:intergenic | 20.0% |
| !! | AGTTAGTGAAAAATACATTA+TGG | - | chr8_2:18336854-18336873 | Msa1238300:CDS | 20.0% |
| !! | TATGAAAAAATCATGGTAAT+TGG | + | chr8_2:18336910-18336929 | None:intergenic | 20.0% |
| !!! | GATTTTATTTTACTTTGACT+TGG | - | chr8_2:18337084-18337103 | Msa1238300:intron | 20.0% |
| !! | TTTACTATTTCGATAGTATT+TGG | + | chr8_2:18337730-18337749 | Msa1238310:CDS | 20.0% |
| ! | GACATATAATTGATATAGGA+AGG | - | chr8_2:18333550-18333569 | Msa1238300:CDS | 25.0% |
| !!! | TTTTTAAAGTACATAGTTGC+AGG | - | chr8_2:18333664-18333683 | Msa1238300:intron | 25.0% |
| ! | TTTCTTCTTAAATGCATACA+AGG | - | chr8_2:18333736-18333755 | Msa1238300:intron | 25.0% |
| ! | TCTGAACAATATCTAAACAA+AGG | + | chr8_2:18334141-18334160 | None:intergenic | 25.0% |
| !! | ACATAGTTCTATATTTAGAG+AGG | + | chr8_2:18334262-18334281 | None:intergenic | 25.0% |
| ! | ACTATGTTTAAATGTTACGT+TGG | - | chr8_2:18334275-18334294 | Msa1238300:intron | 25.0% |
| ! | AGACTAGACAAAATAGAATT+AGG | - | chr8_2:18334308-18334327 | Msa1238300:intron | 25.0% |
| !! | TCTATAAGCTTTTCTACTAT+AGG | + | chr8_2:18334366-18334385 | None:intergenic | 25.0% |
| ! | AAAATAAGCTTAGATGGTTT+GGG | - | chr8_2:18334385-18334404 | Msa1238300:intron | 25.0% |
| !! | GTTTATCTTATAGTTTTCGT+AGG | + | chr8_2:18334495-18334514 | None:intergenic | 25.0% |
| ! | AACCATTAGAAATGATTTAG+AGG | - | chr8_2:18334512-18334531 | Msa1238300:CDS | 25.0% |
| !! | AAGTCTTATCTCACTAAATA+GGG | + | chr8_2:18334605-18334624 | None:intergenic | 25.0% |
| !!! | TCTTTTCTTATATTTGAGAC+CGG | + | chr8_2:18334732-18334751 | None:intergenic | 25.0% |
| ! | CATTGAGTAGTTAATGTATT+TGG | + | chr8_2:18334806-18334825 | None:intergenic | 25.0% |
| ! | TAAAAAAATATTACTCCCTC+CGG | + | chr8_2:18334863-18334882 | None:intergenic | 25.0% |
| !!! | GAAAAGTTTTATAAGGAGAA+AGG | - | chr8_2:18335198-18335217 | Msa1238300:intron | 25.0% |
| ! | TTAACCCAAATATATAATGG+TGG | + | chr8_2:18335393-18335412 | None:intergenic | 25.0% |
| !! | AAAGATTTCCATCAACATTT+TGG | + | chr8_2:18335521-18335540 | None:intergenic | 25.0% |
| !! | AATTTTTCCATCAGCATTTT+TGG | + | chr8_2:18335552-18335571 | None:intergenic | 25.0% |
| !! | TGCTGATGGAAAAATTTTAT+AGG | - | chr8_2:18335556-18335575 | Msa1238300:intron | 25.0% |
| !! | GCTGATGGAAAAATTTTATA+GGG | - | chr8_2:18335557-18335576 | Msa1238300:intron | 25.0% |
| !! | ATGCTGATGGAAAATTTTAT+AGG | - | chr8_2:18335587-18335606 | Msa1238300:intron | 25.0% |
| !! | TGCTGATGGAAAATTTTATA+GGG | - | chr8_2:18335588-18335607 | Msa1238300:intron | 25.0% |
| ! | TTCATCATAACATTTGCTTT+AGG | - | chr8_2:18335875-18335894 | Msa1238300:intron | 25.0% |
| ! | TTTAGGCATTAAAACATGTT+GGG | - | chr8_2:18335892-18335911 | Msa1238300:intron | 25.0% |
| ! | AAGTGTAGAATAATAGAAAG+GGG | + | chr8_2:18336023-18336042 | None:intergenic | 25.0% |
| ! | GAAGTGTAGAATAATAGAAA+GGG | + | chr8_2:18336024-18336043 | None:intergenic | 25.0% |
| !! | AGAAGTGTAGAATAATAGAA+AGG | + | chr8_2:18336025-18336044 | None:intergenic | 25.0% |
| !!! | ACTTTAAGGATATTTTTCCA+TGG | + | chr8_2:18336094-18336113 | None:intergenic | 25.0% |
| ! | ATCCTTAAAGTCATAAATGA+AGG | - | chr8_2:18336103-18336122 | Msa1238300:intron | 25.0% |
| ! | TCCTTAAAGTCATAAATGAA+GGG | - | chr8_2:18336104-18336123 | Msa1238300:intron | 25.0% |
| ! | TGTCCTAAAATTAACATCAA+AGG | - | chr8_2:18336296-18336315 | Msa1238300:intron | 25.0% |
| !!! | ATTGTGTATATTTTGATGAC+AGG | - | chr8_2:18336365-18336384 | Msa1238300:intron | 25.0% |
| ! | ACTCTTAACATACACATATA+TGG | - | chr8_2:18336760-18336779 | Msa1238300:CDS | 25.0% |
| ! | CTCTTAACATACACATATAT+GGG | - | chr8_2:18336761-18336780 | Msa1238300:CDS | 25.0% |
| ! | TCTTAACATACACATATATG+GGG | - | chr8_2:18336762-18336781 | Msa1238300:CDS | 25.0% |
| !!! | TACCATGATTTTTTCATAAG+AGG | - | chr8_2:18336912-18336931 | Msa1238300:CDS | 25.0% |
| ! | CATTTACTATTGTCTCTAAT+AGG | + | chr8_2:18336963-18336982 | None:intergenic | 25.0% |
| ! | ATTCCCTTAAAATATCTAAC+AGG | - | chr8_2:18337155-18337174 | Msa1238300:intron | 25.0% |
| !! | TCACATGTCATTAATTTTTC+AGG | + | chr8_2:18337330-18337349 | None:intergenic | 25.0% |
| ! | ATTAATGACATGTGATGTAA+TGG | - | chr8_2:18337335-18337354 | Msa1238300:intron | 25.0% |
| ! | TTAATGACATGTGATGTAAT+GGG | - | chr8_2:18337336-18337355 | Msa1238300:intron | 25.0% |
| ! | TCTAAATCTAAAGGATCATA+TGG | + | chr8_2:18337438-18337457 | None:intergenic | 25.0% |
| ! | AAAAGCTAATTCAATAATGC+AGG | - | chr8_2:18337473-18337492 | Msa1238300:intron | 25.0% |
| ! | AATAATGCAGGTAGAAATTT+GGG | - | chr8_2:18337485-18337504 | Msa1238300:intron | 25.0% |
| ! | AAATTTGGGAAGATGAATAT+TGG | - | chr8_2:18337499-18337518 | Msa1238300:intron | 25.0% |
| !!! | TCATCCTTTAGGATAAAAAA+GGG | + | chr8_2:18337638-18337657 | None:intergenic | 25.0% |
| !!! | ATCATCCTTTAGGATAAAAA+AGG | + | chr8_2:18337639-18337658 | None:intergenic | 25.0% |
| ! | ATATACACTTATCATCCTTT+AGG | + | chr8_2:18337649-18337668 | None:intergenic | 25.0% |
| !!! | TTTGATAGTTGATAGACATT+TGG | - | chr8_2:18337696-18337715 | Msa1238300:five_prime_UTR | 25.0% |
| ACATGAGAAACTCAAAAACT+TGG | + | chr8_2:18333034-18333053 | None:intergenic | 30.0% | |
| ! | ACATATCTGAAACACTTCTA+TGG | - | chr8_2:18333101-18333120 | Msa1238300:intron | 30.0% |
| ! | GAACATTTTTGACACCAAAT+TGG | - | chr8_2:18333492-18333511 | Msa1238300:CDS | 30.0% |
| AAATGCCAATAGTTCCAATT+TGG | + | chr8_2:18333509-18333528 | None:intergenic | 30.0% | |
| ! | TTGTTGGGTTATGTTTTGTA+GGG | + | chr8_2:18333795-18333814 | None:intergenic | 30.0% |
| ! | TTTGTTGGGTTATGTTTTGT+AGG | + | chr8_2:18333796-18333815 | None:intergenic | 30.0% |
| TAAAACCATGGAGAGAAAAA+GGG | - | chr8_2:18333866-18333885 | Msa1238300:CDS | 30.0% | |
| ! | AGATGTATGTGGAAAAGTAT+AGG | - | chr8_2:18333956-18333975 | Msa1238300:intron | 30.0% |
| AAGAGATGTGTTTACTTTGT+GGG | - | chr8_2:18333993-18334012 | Msa1238300:intron | 30.0% | |
| TCAAACATAAGTTCCAAATC+AGG | + | chr8_2:18334057-18334076 | None:intergenic | 30.0% | |
| GAACAATATCTAAACAAAGG+AGG | + | chr8_2:18334138-18334157 | None:intergenic | 30.0% | |
| TAGATATTGTCTTTCCAGAT+TGG | - | chr8_2:18334172-18334191 | Msa1238300:intron | 30.0% | |
| GAAAATAAGCTTAGATGGTT+TGG | - | chr8_2:18334384-18334403 | Msa1238300:intron | 30.0% | |
| GACCTCTAAATCATTTCTAA+TGG | + | chr8_2:18334517-18334536 | None:intergenic | 30.0% | |
| ! | CAAGTCTTATCTCACTAAAT+AGG | + | chr8_2:18334606-18334625 | None:intergenic | 30.0% |
| CTATTTAGTGAGATAAGACT+TGG | - | chr8_2:18334604-18334623 | Msa1238300:CDS | 30.0% | |
| CTACTCAATGAACCTAAAAA+AGG | - | chr8_2:18334816-18334835 | Msa1238300:intron | 30.0% | |
| CTAGGTCATATATTAAGAGA+CGG | + | chr8_2:18334921-18334940 | None:intergenic | 30.0% | |
| ! | CTAGGTTATTTAAAATGGGA+CGG | - | chr8_2:18335136-18335155 | Msa1238300:intron | 30.0% |
| !! | TTTTATAAGGAGAAAGGTAC+TGG | - | chr8_2:18335204-18335223 | Msa1238300:intron | 30.0% |
| AAATTATTGCATGACTAGTG+GGG | + | chr8_2:18335294-18335313 | None:intergenic | 30.0% | |
| CAAATTATTGCATGACTAGT+GGG | + | chr8_2:18335295-18335314 | None:intergenic | 30.0% | |
| TCAAATTATTGCATGACTAG+TGG | + | chr8_2:18335296-18335315 | None:intergenic | 30.0% | |
| !! | TTTTAAGGGAGAACTAACTA+GGG | + | chr8_2:18335349-18335368 | None:intergenic | 30.0% |
| !! | TTTTTAAGGGAGAACTAACT+AGG | + | chr8_2:18335350-18335369 | None:intergenic | 30.0% |
| !! | ATTTTTATCAAAGTTGGCCT+TGG | - | chr8_2:18335696-18335715 | Msa1238300:intron | 30.0% |
| !!! | TTTTTATCAAAGTTGGCCTT+GGG | - | chr8_2:18335697-18335716 | Msa1238300:intron | 30.0% |
| ! | GATGTTCTAGTTAGAGATTT+AGG | - | chr8_2:18335724-18335743 | Msa1238300:intron | 30.0% |
| CTTTAGGCATTAAAACATGT+TGG | - | chr8_2:18335891-18335910 | Msa1238300:intron | 30.0% | |
| AGTGTAGAATAATAGAAAGG+GGG | + | chr8_2:18336022-18336041 | None:intergenic | 30.0% | |
| TCCCTTCATTTATGACTTTA+AGG | + | chr8_2:18336108-18336127 | None:intergenic | 30.0% | |
| ! | ATAGAGTACCTTATGCTTAT+TGG | - | chr8_2:18336149-18336168 | Msa1238300:intron | 30.0% |
| ATGTAACATTGCATTGTAGA+AGG | + | chr8_2:18336210-18336229 | None:intergenic | 30.0% | |
| GTTTCAACAAATCCAACTTA+GGG | - | chr8_2:18336412-18336431 | Msa1238300:intron | 30.0% | |
| TTTCAACAAATCCAACTTAG+GGG | - | chr8_2:18336413-18336432 | Msa1238300:intron | 30.0% | |
| GCAAAAATATCTTGAGTGAA+AGG | - | chr8_2:18336461-18336480 | Msa1238300:intron | 30.0% | |
| CTTAACATACACATATATGG+GGG | - | chr8_2:18336763-18336782 | Msa1238300:CDS | 30.0% | |
| AGGTACAAGATATACATAGA+AGG | - | chr8_2:18336819-18336838 | Msa1238300:CDS | 30.0% | |
| ACAAGATATACATAGAAGGA+TGG | - | chr8_2:18336823-18336842 | Msa1238300:CDS | 30.0% | |
| CAAGATATACATAGAAGGAT+GGG | - | chr8_2:18336824-18336843 | Msa1238300:CDS | 30.0% | |
| GGACTTTACATATAATGTCA+TGG | + | chr8_2:18336889-18336908 | None:intergenic | 30.0% | |
| TGCCTCTTATGAAAAAATCA+TGG | + | chr8_2:18336917-18336936 | None:intergenic | 30.0% | |
| !!! | TGATTTTTTCATAAGAGGCA+TGG | - | chr8_2:18336917-18336936 | Msa1238300:CDS | 30.0% |
| ATAGGCCAATAATGTTGTAA+GGG | + | chr8_2:18336945-18336964 | None:intergenic | 30.0% | |
| AATAGGCCAATAATGTTGTA+AGG | + | chr8_2:18336946-18336965 | None:intergenic | 30.0% | |
| !! | TCTTAAATTTGCTGTGGAAT+GGG | - | chr8_2:18336989-18337008 | Msa1238300:CDS | 30.0% |
| !! | GTGCCTGTTAGATATTTTAA+GGG | + | chr8_2:18337161-18337180 | None:intergenic | 30.0% |
| ! | TGTGCCTGTTAGATATTTTA+AGG | + | chr8_2:18337162-18337181 | None:intergenic | 30.0% |
| AAATCTAAAGGATCATATGG+AGG | + | chr8_2:18337435-18337454 | None:intergenic | 30.0% | |
| CAATAATGCAGGTAGAAATT+TGG | - | chr8_2:18337484-18337503 | Msa1238300:intron | 30.0% | |
| ATATTGGCAGAGTAAAAACA+AGG | - | chr8_2:18337515-18337534 | Msa1238300:intron | 30.0% | |
| TATTGGCAGAGTAAAAACAA+GGG | - | chr8_2:18337516-18337535 | Msa1238300:intron | 30.0% | |
| !!! | AGTTCCCTTTTTTATCCTAA+AGG | - | chr8_2:18337631-18337650 | Msa1238300:CDS | 30.0% |
| !!! | TTGCTCTAAGATTTTATGAC+AGG | - | chr8_2:18337673-18337692 | Msa1238300:exon | 30.0% |
| !! | TCAAGTTGAATCCTCCTATA+AGG | + | chr8_2:18333069-18333088 | None:intergenic | 35.0% |
| ! | TATCTGAAACACTTCTATGG+CGG | - | chr8_2:18333104-18333123 | Msa1238300:intron | 35.0% |
| !! | GCAAGTAACTTTAGCTTTCT+TGG | + | chr8_2:18333159-18333178 | None:intergenic | 35.0% |
| AGCTAAAGTTACTTGCTTAG+TGG | - | chr8_2:18333163-18333182 | Msa1238300:three_prime_UTR | 35.0% | |
| TGACACCAAATTGGAACTAT+TGG | - | chr8_2:18333501-18333520 | Msa1238300:CDS | 35.0% | |
| GAAGAAAATCTTCTTGGTCT+TGG | + | chr8_2:18333723-18333742 | None:intergenic | 35.0% | |
| ! | CATGGTTGTTGAGATTTGTT+GGG | + | chr8_2:18333810-18333829 | None:intergenic | 35.0% |
| ACATGGTTGTTGAGATTTGT+TGG | + | chr8_2:18333811-18333830 | None:intergenic | 35.0% | |
| TAAAGTATGAGGGACAAACA+TGG | + | chr8_2:18333828-18333847 | None:intergenic | 35.0% | |
| TTTGTCCCTCATACTTTAGA+TGG | - | chr8_2:18333830-18333849 | Msa1238300:CDS | 35.0% | |
| ! | TGGATCCATCTAAAGTATGA+GGG | + | chr8_2:18333838-18333857 | None:intergenic | 35.0% |
| ! | ATGGATCCATCTAAAGTATG+AGG | + | chr8_2:18333839-18333858 | None:intergenic | 35.0% |
| ! | TCCATGAAGATCTAAAACCA+TGG | - | chr8_2:18333854-18333873 | Msa1238300:CDS | 35.0% |
| !!! | TCCATGGTTTTAGATCTTCA+TGG | + | chr8_2:18333858-18333877 | None:intergenic | 35.0% |
| CTAAAACCATGGAGAGAAAA+AGG | - | chr8_2:18333865-18333884 | Msa1238300:CDS | 35.0% | |
| ACATGTTGCAAAAGGCAAAA+AGG | - | chr8_2:18333899-18333918 | Msa1238300:CDS | 35.0% | |
| CAAGAGATGTGTTTACTTTG+TGG | - | chr8_2:18333992-18334011 | Msa1238300:intron | 35.0% | |
| AGAGATGTGTTTACTTTGTG+GGG | - | chr8_2:18333994-18334013 | Msa1238300:intron | 35.0% | |
| CAATTATTGAGAATGTACCC+TGG | - | chr8_2:18334024-18334043 | Msa1238300:intron | 35.0% | |
| AACTTATCCAAAGGAACAAC+AGG | + | chr8_2:18334093-18334112 | None:intergenic | 35.0% | |
| GTTCCTTTGGATAAGTTTCA+AGG | - | chr8_2:18334096-18334115 | Msa1238300:intron | 35.0% | |
| CAATATCTAAACAAAGGAGG+CGG | + | chr8_2:18334135-18334154 | None:intergenic | 35.0% | |
| TAAATGTTACGTTGGATGAG+TGG | - | chr8_2:18334283-18334302 | Msa1238300:intron | 35.0% | |
| ATGCACCATTAAAGAGATAG+TGG | - | chr8_2:18334332-18334351 | Msa1238300:CDS | 35.0% | |
| TGCACCATTAAAGAGATAGT+GGG | - | chr8_2:18334333-18334352 | Msa1238300:CDS | 35.0% | |
| CGTAAGAAAAGTAGATCAGA+TGG | - | chr8_2:18334437-18334456 | Msa1238300:intron | 35.0% | |
| AAGAAAAGTAGATCAGATGG+AGG | - | chr8_2:18334440-18334459 | Msa1238300:intron | 35.0% | |
| TGATTTAGAGGTCAATGAGT+TGG | - | chr8_2:18334524-18334543 | Msa1238300:CDS | 35.0% | |
| CTTATCTCACTAAATAGGGT+TGG | + | chr8_2:18334601-18334620 | None:intergenic | 35.0% | |
| ! | TTCTTATATTTGAGACCGGA+GGG | + | chr8_2:18334845-18334864 | None:intergenic | 35.0% |
| ! | TTTCTTATATTTGAGACCGG+AGG | + | chr8_2:18334844-18334863 | None:intergenic | 35.0% |
| ! | TTTCTTATATTTGAGACCGG+AGG | - | chr8_2:18334844-18334863 | Msa1238300:intron | 35.0% |
| ! | TTCTTATATTTGAGACCGGA+GGG | - | chr8_2:18334845-18334864 | Msa1238300:intron | 35.0% |
| GTCATATATTAAGAGACGGA+GGG | + | chr8_2:18334917-18334936 | None:intergenic | 35.0% | |
| ! | GTTATTTAAAATGGGACGGA+GGG | - | chr8_2:18335140-18335159 | Msa1238300:intron | 35.0% |
| TTCTCCCTTAAAAAAGCTCT+AGG | - | chr8_2:18335356-18335375 | Msa1238300:intron | 35.0% | |
| !!! | TCCACCTAGAGCTTTTTTAA+GGG | + | chr8_2:18335363-18335382 | None:intergenic | 35.0% |
| !!! | ATCCACCTAGAGCTTTTTTA+AGG | + | chr8_2:18335364-18335383 | None:intergenic | 35.0% |
| TTTAGGGACCAAAATGTTGA+TGG | - | chr8_2:18335510-18335529 | Msa1238300:intron | 35.0% | |
| ! | TGTTGATGGAAATCTTTGAC+AGG | - | chr8_2:18335524-18335543 | Msa1238300:intron | 35.0% |
| ! | GTTGATGGAAATCTTTGACA+GGG | - | chr8_2:18335525-18335544 | Msa1238300:intron | 35.0% |
| ATAGGGACTAAAAATGCTGA+TGG | - | chr8_2:18335574-18335593 | Msa1238300:intron | 35.0% | |
| CAGAGACAAATATAAAGCCA+TGG | - | chr8_2:18336074-18336093 | Msa1238300:intron | 35.0% | |
| AGTACCTTATGCTTATTGGA+AGG | - | chr8_2:18336153-18336172 | Msa1238300:intron | 35.0% | |
| GTACCTTATGCTTATTGGAA+GGG | - | chr8_2:18336154-18336173 | Msa1238300:intron | 35.0% | |
| TACCTTATGCTTATTGGAAG+GGG | - | chr8_2:18336155-18336174 | Msa1238300:intron | 35.0% | |
| !! | TGTAGAAGGTTTTGTCTAGT+TGG | + | chr8_2:18336196-18336215 | None:intergenic | 35.0% |
| GAACACTCTCATATACATAC+AGG | - | chr8_2:18336243-18336262 | Msa1238300:intron | 35.0% | |
| !!! | GTATATTTTGATGACAGGAC+TGG | - | chr8_2:18336370-18336389 | Msa1238300:intron | 35.0% |
| TGGATACATGAATCCAATCA+AGG | - | chr8_2:18336390-18336409 | Msa1238300:intron | 35.0% | |
| !! | GGATTTGTTGAAACCTTGAT+TGG | + | chr8_2:18336406-18336425 | None:intergenic | 35.0% |
| GGTTTCAACAAATCCAACTT+AGG | - | chr8_2:18336411-18336430 | Msa1238300:intron | 35.0% | |
| ! | TTTTAACATGCGCGTCAAAT+TGG | + | chr8_2:18336678-18336697 | None:intergenic | 35.0% |
| !!! | ATTTGGTTTTGACATGTCAC+AGG | - | chr8_2:18336799-18336818 | Msa1238300:CDS | 35.0% |
| TGGTTCCCTTACAACATTAT+TGG | - | chr8_2:18336937-18336956 | Msa1238300:CDS | 35.0% | |
| TTCCACAGCAAATTTAAGAG+AGG | + | chr8_2:18336988-18337007 | None:intergenic | 35.0% | |
| !! | CTCTTAAATTTGCTGTGGAA+TGG | - | chr8_2:18336988-18337007 | Msa1238300:CDS | 35.0% |
| !! | CTTAAATTTGCTGTGGAATG+GGG | - | chr8_2:18336990-18337009 | Msa1238300:CDS | 35.0% |
| TCTTGCTCATTTGAAGAATG+TGG | + | chr8_2:18337055-18337074 | None:intergenic | 35.0% | |
| TGGTAGCAAATTCATACAAG+AGG | - | chr8_2:18337197-18337216 | Msa1238300:intron | 35.0% | |
| TTCAAACCAACTATACCTAG+AGG | - | chr8_2:18337288-18337307 | Msa1238300:intron | 35.0% | |
| !! | ATGTAATGGGTGGTAACAAA+AGG | - | chr8_2:18337349-18337368 | Msa1238300:intron | 35.0% |
| AACTCAAAAACTTGGAGCAG+AGG | + | chr8_2:18333026-18333045 | None:intergenic | 40.0% | |
| GTCTGCAACAAGTTCCTTAT+AGG | - | chr8_2:18333052-18333071 | Msa1238300:three_prime_UTR | 40.0% | |
| TGCAACAAGTTCCTTATAGG+AGG | - | chr8_2:18333055-18333074 | Msa1238300:three_prime_UTR | 40.0% | |
| !! | CTTTTTGTGCTTTTGCTGTC+TGG | - | chr8_2:18333189-18333208 | Msa1238300:three_prime_UTR | 40.0% |
| ! | GGAAGGAGCTAGTCTAATAT+TGG | - | chr8_2:18333567-18333586 | Msa1238300:CDS | 40.0% |
| AGTCTGTCTTTGTGGATGAA+TGG | + | chr8_2:18333700-18333719 | None:intergenic | 40.0% | |
| ! | TGTTTTGTAGGGTAGTCTCT+TGG | + | chr8_2:18333784-18333803 | None:intergenic | 40.0% |
| CACAAGGAACATGTTGCAAA+AGG | - | chr8_2:18333891-18333910 | Msa1238300:CDS | 40.0% | |
| ACATTTCAAGCTTGTGGTTG+TGG | - | chr8_2:18333927-18333946 | Msa1238300:CDS | 40.0% | |
| TGTGGATGGAAAGATGTATG+TGG | - | chr8_2:18333945-18333964 | Msa1238300:intron | 40.0% | |
| AGATAAGCCTGTTGTTCCTT+TGG | - | chr8_2:18334083-18334102 | Msa1238300:intron | 40.0% | |
| GGTCCTTGAAACTTATCCAA+AGG | + | chr8_2:18334102-18334121 | None:intergenic | 40.0% | |
| !! | TCTTTCCAGATTGGTCCTTT+TGG | - | chr8_2:18334181-18334200 | Msa1238300:intron | 40.0% |
| !! | CTTTCCAGATTGGTCCTTTT+GGG | - | chr8_2:18334182-18334201 | Msa1238300:intron | 40.0% |
| !! | TTTCCAGATTGGTCCTTTTG+GGG | - | chr8_2:18334183-18334202 | Msa1238300:intron | 40.0% |
| GCACCATTAAAGAGATAGTG+GGG | - | chr8_2:18334334-18334353 | Msa1238300:CDS | 40.0% | |
| ! | CACCATTAAAGAGATAGTGG+GGG | - | chr8_2:18334335-18334354 | Msa1238300:CDS | 40.0% |
| TACCCCCACTATCTCTTTAA+TGG | + | chr8_2:18334340-18334359 | None:intergenic | 40.0% | |
| GGTCATATATTAAGAGACGG+AGG | + | chr8_2:18334918-18334937 | None:intergenic | 40.0% | |
| ! | GGTTATTTAAAATGGGACGG+AGG | - | chr8_2:18335139-18335158 | Msa1238300:intron | 40.0% |
| !! | TATAAGGAGAAAGGTACTGG+TGG | - | chr8_2:18335207-18335226 | Msa1238300:intron | 40.0% |
| !!! | GTACTGGTGGTCTTTTTTAG+AGG | - | chr8_2:18335220-18335239 | Msa1238300:intron | 40.0% |
| ATCAAGACCTGCATTTGTCA+AGG | + | chr8_2:18335261-18335280 | None:intergenic | 40.0% | |
| !! | TCCCTTAAAAAAGCTCTAGG+TGG | - | chr8_2:18335359-18335378 | Msa1238300:intron | 40.0% |
| AACTAGAACATCATGACCCA+AGG | + | chr8_2:18335716-18335735 | None:intergenic | 40.0% | |
| AAGGGAACAAAAAGACCAAG+TGG | - | chr8_2:18336122-18336141 | Msa1238300:intron | 40.0% | |
| GAACAAAAAGACCAAGTGGA+AGG | - | chr8_2:18336126-18336145 | Msa1238300:intron | 40.0% | |
| TTCCCCTTCCAATAAGCATA+AGG | + | chr8_2:18336160-18336179 | None:intergenic | 40.0% | |
| GTCTAGTTGGAGCAACATAA+GGG | + | chr8_2:18336183-18336202 | None:intergenic | 40.0% | |
| TGTCTAGTTGGAGCAACATA+AGG | + | chr8_2:18336184-18336203 | None:intergenic | 40.0% | |
| TCACCTACCTATGAGTACAT+TGG | + | chr8_2:18336440-18336459 | None:intergenic | 40.0% | |
| GGGGCATAGAATGATACATT+TGG | - | chr8_2:18336782-18336801 | Msa1238300:CDS | 40.0% | |
| ! | TATACATAGAAGGATGGGCT+TGG | - | chr8_2:18336829-18336848 | Msa1238300:CDS | 40.0% |
| !! | CACCTCTCTTAAATTTGCTG+TGG | - | chr8_2:18336983-18337002 | Msa1238300:CDS | 40.0% |
| ATCTAACAGGCACAGTCAAT+AGG | - | chr8_2:18337168-18337187 | Msa1238300:intron | 40.0% | |
| ! | ATGACATGTGATGTAATGGG+TGG | - | chr8_2:18337339-18337358 | Msa1238300:intron | 40.0% |
| ! | TAATGGGTGGTAACAAAAGG+AGG | - | chr8_2:18337352-18337371 | Msa1238300:intron | 40.0% |
| TGGTAACAAAAGGAGGTTCA+TGG | - | chr8_2:18337359-18337378 | Msa1238300:intron | 40.0% | |
| TCTAAAGGATCATATGGAGG+AGG | + | chr8_2:18337432-18337451 | None:intergenic | 40.0% | |
| AACTTGGAGCAGAGGAACTA+TGG | + | chr8_2:18333018-18333037 | None:intergenic | 45.0% | |
| ! | GTGATCCCTTTTTCTCTCCA+TGG | + | chr8_2:18333874-18333893 | None:intergenic | 45.0% |
| GGAGAGAAAAAGGGATCACA+AGG | - | chr8_2:18333875-18333894 | Msa1238300:CDS | 45.0% | |
| GACAGCACATTTCAAGCTTG+TGG | - | chr8_2:18333921-18333940 | Msa1238300:CDS | 45.0% | |
| TTCAAGCTTGTGGTTGTGGA+TGG | - | chr8_2:18333931-18333950 | Msa1238300:intron | 45.0% | |
| ! | CCAAATCAGGTAACTTGCCA+GGG | + | chr8_2:18334044-18334063 | None:intergenic | 45.0% |
| ! | TCCAAATCAGGTAACTTGCC+AGG | + | chr8_2:18334045-18334064 | None:intergenic | 45.0% |
| TAGGACTTACCATCCCCAAA+AGG | + | chr8_2:18334199-18334218 | None:intergenic | 45.0% | |
| TGCTTCTATCATACTCCCTC+CGG | - | chr8_2:18334710-18334729 | Msa1238300:intron | 45.0% | |
| CATATGTGCGAGAGTCAACT+AGG | + | chr8_2:18334939-18334958 | None:intergenic | 45.0% | |
| ATTTGTCAAGGTGGGATGTG+TGG | + | chr8_2:18335249-18335268 | None:intergenic | 45.0% | |
| AGACCTGCATTTGTCAAGGT+GGG | + | chr8_2:18335257-18335276 | None:intergenic | 45.0% | |
| AAGACCTGCATTTGTCAAGG+TGG | + | chr8_2:18335258-18335277 | None:intergenic | 45.0% | |
| TGCAGGTCTTGATCAAATGC+AGG | - | chr8_2:18335268-18335287 | Msa1238300:intron | 45.0% | |
| ACAGGGACCAAAAATGCTGA+TGG | - | chr8_2:18335542-18335561 | Msa1238300:intron | 45.0% | |
| AGGTACTCTATCCTTCCACT+TGG | + | chr8_2:18336140-18336159 | None:intergenic | 45.0% | |
| AGTACATTGGTCCCCTAAGT+TGG | + | chr8_2:18336427-18336446 | None:intergenic | 45.0% | |
| TAGGGGACCAATGTACTCAT+AGG | - | chr8_2:18336430-18336449 | Msa1238300:intron | 45.0% | |
| GGACCAATGTACTCATAGGT+AGG | - | chr8_2:18336434-18336453 | Msa1238300:intron | 45.0% | |
| TAACATGCGCGTCAAATTGG+AGG | + | chr8_2:18336675-18336694 | None:intergenic | 45.0% | |
| GGGCAACAATCACACTCATA+AGG | - | chr8_2:18337010-18337029 | Msa1238300:CDS | 45.0% | |
| ACAGCTCCTCTAGGTATAGT+TGG | + | chr8_2:18337297-18337316 | None:intergenic | 45.0% | |
| AACTATACCTAGAGGAGCTG+TGG | - | chr8_2:18337296-18337315 | Msa1238300:intron | 45.0% | |
| CAAATTTCCACAGCTCCTCT+AGG | + | chr8_2:18337306-18337325 | None:intergenic | 45.0% | |
| GAGGTTCATGGAAGAGTCAA+TGG | - | chr8_2:18337371-18337390 | Msa1238300:intron | 45.0% | |
| CATGGAAGAGTCAATGGTGA+AGG | - | chr8_2:18337377-18337396 | Msa1238300:intron | 45.0% | |
| TATGGAGGAGGAATAGTGCA+TGG | + | chr8_2:18337420-18337439 | None:intergenic | 45.0% | |
| !!! | ATATTAATTTTTCTTATAAT+TGG | - | chr8_2:18334642-18334661 | Msa1238300:CDS | 5.0% |
| !!! | ATTTTTTATTTAAAATTTTG+AGG | + | chr8_2:18335750-18335769 | None:intergenic | 5.0% |
| !! | CATAAATAAAAATAAAAATT+AGG | + | chr8_2:18335923-18335942 | None:intergenic | 5.0% |
| GGTCTTGGAGTCTGTCTTTG+TGG | + | chr8_2:18333708-18333727 | None:intergenic | 50.0% | |
| CCCTGGCAAGTTACCTGATT+TGG | - | chr8_2:18334041-18334060 | Msa1238300:intron | 50.0% | |
| ! | AAAGGAGGCGGTGAAGCATT+TGG | + | chr8_2:18334123-18334142 | None:intergenic | 50.0% |
| CATCCCCAAAAGGACCAATC+TGG | + | chr8_2:18334189-18334208 | None:intergenic | 50.0% | |
| !! | CAGATTGGTCCTTTTGGGGA+TGG | - | chr8_2:18334187-18334206 | Msa1238300:intron | 50.0% |
| AGATCAGATGGAGGAGAGTC+AGG | - | chr8_2:18334449-18334468 | Msa1238300:intron | 50.0% | |
| CATCCCACCTTGACAAATGC+AGG | - | chr8_2:18335251-18335270 | Msa1238300:intron | 50.0% | |
| ACAGGCACAGTCAATAGGAG+AGG | - | chr8_2:18337173-18337192 | Msa1238300:intron | 50.0% | |
| GCACAGTCAATAGGAGAGGC+TGG | - | chr8_2:18337177-18337196 | Msa1238300:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 18333009 | 18337759 | 18333009 | ID=Msa1238300;Name=Msa1238300 |
| chr8_2 | mRNA | 18333009 | 18337759 | 18333009 | ID=Msa1238300-mRNA-1;Parent=Msa1238300;Name=Msa1238300-mRNA-1;_AED=0.03;_eAED=0.03;_QI=83|1|1|1|0.83|0.71|7|187|498 |
| chr8_2 | exon | 18333009 | 18333112 | 18333009 | ID=Msa1238300-mRNA-1:exon:6937;Parent=Msa1238300-mRNA-1 |
| chr8_2 | exon | 18333140 | 18333591 | 18333140 | ID=Msa1238300-mRNA-1:exon:6936;Parent=Msa1238300-mRNA-1 |
| chr8_2 | exon | 18333737 | 18333947 | 18333737 | ID=Msa1238300-mRNA-1:exon:6935;Parent=Msa1238300-mRNA-1 |
| chr8_2 | exon | 18334317 | 18334381 | 18334317 | ID=Msa1238300-mRNA-1:exon:6934;Parent=Msa1238300-mRNA-1 |
| chr8_2 | exon | 18334504 | 18334696 | 18334504 | ID=Msa1238300-mRNA-1:exon:6933;Parent=Msa1238300-mRNA-1 |
| chr8_2 | exon | 18336560 | 18337095 | 18336560 | ID=Msa1238300-mRNA-1:exon:6932;Parent=Msa1238300-mRNA-1 |
| chr8_2 | exon | 18337554 | 18337759 | 18337554 | ID=Msa1238300-mRNA-1:exon:6931;Parent=Msa1238300-mRNA-1 |
| chr8_2 | five_prime_UTR | 18337677 | 18337759 | 18337677 | ID=Msa1238300-mRNA-1:five_prime_utr;Parent=Msa1238300-mRNA-1 |
| chr8_2 | CDS | 18337554 | 18337676 | 18337554 | ID=Msa1238300-mRNA-1:cds;Parent=Msa1238300-mRNA-1 |
| chr8_2 | CDS | 18336560 | 18337095 | 18336560 | ID=Msa1238300-mRNA-1:cds;Parent=Msa1238300-mRNA-1 |
| chr8_2 | CDS | 18334504 | 18334696 | 18334504 | ID=Msa1238300-mRNA-1:cds;Parent=Msa1238300-mRNA-1 |
| chr8_2 | CDS | 18334317 | 18334381 | 18334317 | ID=Msa1238300-mRNA-1:cds;Parent=Msa1238300-mRNA-1 |
| chr8_2 | CDS | 18333737 | 18333947 | 18333737 | ID=Msa1238300-mRNA-1:cds;Parent=Msa1238300-mRNA-1 |
| chr8_2 | CDS | 18333223 | 18333591 | 18333223 | ID=Msa1238300-mRNA-1:cds;Parent=Msa1238300-mRNA-1 |
| chr8_2 | three_prime_UTR | 18333140 | 18333222 | 18333140 | ID=Msa1238300-mRNA-1:three_prime_utr;Parent=Msa1238300-mRNA-1 |
| chr8_2 | three_prime_UTR | 18333009 | 18333112 | 18333009 | ID=Msa1238300-mRNA-1:three_prime_utr;Parent=Msa1238300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
