Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238590 | XP_003627621.2 | 93.031 | 287 | 20 | 0 | 10 | 296 | 1 | 287 | 0.0 | 530 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238590 | sp|Q9FLT2|IPMKB_ARATH | 52.669 | 281 | 122 | 4 | 13 | 282 | 2 | 282 | 1.22e-105 | 312 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1238590 | Msa1319510 | 0.973721 | 6.530730e-137 | -8.615850e-47 |
| Msa0420530 | Msa1238590 | 0.801326 | 9.493632e-49 | -8.615850e-47 |
| Msa0301260 | Msa1238590 | -0.803166 | 3.969149e-49 | -8.615850e-47 |
| Msa1184610 | Msa1238590 | 0.803284 | 3.751393e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238590 | MtrunA17_Chr8g0349961 | 93.031 | 287 | 20 | 0 | 10 | 296 | 1 | 287 | 0.0 | 530 |
| Msa1238590 | MtrunA17_Chr8g0353241 | 90.175 | 285 | 28 | 0 | 10 | 294 | 1 | 285 | 0.0 | 509 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238590 | AT5G61760.1 | 52.669 | 281 | 122 | 4 | 13 | 282 | 2 | 282 | 1.24e-106 | 312 |
| Msa1238590 | AT5G61760.2 | 52.669 | 281 | 122 | 4 | 13 | 282 | 2 | 282 | 1.24e-106 | 312 |
| Msa1238590 | AT5G07370.2 | 50.000 | 280 | 129 | 5 | 11 | 282 | 1 | 277 | 2.73e-97 | 288 |
| Msa1238590 | AT5G07370.3 | 50.000 | 280 | 129 | 5 | 11 | 282 | 1 | 277 | 2.73e-97 | 288 |
| Msa1238590 | AT5G07370.1 | 50.000 | 280 | 129 | 5 | 11 | 282 | 1 | 277 | 2.73e-97 | 288 |
| Msa1238590 | AT5G07370.4 | 50.000 | 280 | 129 | 5 | 11 | 282 | 1 | 277 | 2.73e-97 | 288 |
Find 80 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATCTTCTACAATAAAATT+AGG | 0.165601 | 8_2:-19150460 | Msa1238590:CDS |
| AGGGAACAATTTGAGAATAT+TGG | 0.214068 | 8_2:+19150666 | None:intergenic |
| AGGCTGCCATAATTTGTTAT+TGG | 0.215550 | 8_2:+19150405 | None:intergenic |
| ATGATGCTTTAATTTCAATT+TGG | 0.241118 | 8_2:-19149691 | Msa1238590:three_prime_UTR |
| GACAGCGGGGTTGGTGTAAT+TGG | 0.254752 | 8_2:+19150564 | None:intergenic |
| GCTATTGATCATAATTTCTT+AGG | 0.268767 | 8_2:-19150085 | Msa1238590:CDS |
| GGCTGCCATAATTTGTTATT+GGG | 0.280852 | 8_2:+19150406 | None:intergenic |
| TCTACACCCTCACCTTGTTT+TGG | 0.306627 | 8_2:-19150599 | Msa1238590:CDS |
| GCCTGATAGAAAGTTTCTTA+TGG | 0.324838 | 8_2:-19150386 | Msa1238590:CDS |
| AATCTTCTACAATAAAATTA+GGG | 0.330691 | 8_2:-19150459 | Msa1238590:CDS |
| TCCTGTTCTGGAGGAATTGT+TGG | 0.355005 | 8_2:-19150263 | Msa1238590:CDS |
| TTCTTTGATTAAGTTTGTTA+AGG | 0.365539 | 8_2:-19150053 | Msa1238590:CDS |
| TCCATAAGAAACTTTCTATC+AGG | 0.370078 | 8_2:+19150385 | None:intergenic |
| TAAGTTTGTTAAGGATGTTT+TGG | 0.378614 | 8_2:-19150044 | Msa1238590:CDS |
| TGACCAGCAACTTGGTGGTC+TGG | 0.381341 | 8_2:+19150823 | None:intergenic |
| GATTACTAGAAAGTATGTTT+TGG | 0.391004 | 8_2:-19149669 | Msa1238590:three_prime_UTR |
| GGTCCACTGATAGACGATTC+TGG | 0.393481 | 8_2:-19150778 | Msa1238590:CDS |
| GTTGACGCCTCCGACGGTTC+TGG | 0.394613 | 8_2:-19150622 | Msa1238590:CDS |
| ATCCCAGACCACCAAGTTGC+TGG | 0.418559 | 8_2:-19150826 | Msa1238590:CDS |
| TCCAACAATTCCTCCAGAAC+AGG | 0.421186 | 8_2:+19150262 | None:intergenic |
| AAATTAGGGTTTAGAGTCTC+CGG | 0.423865 | 8_2:-19150445 | Msa1238590:CDS |
| GACCAGCAACTTGGTGGTCT+GGG | 0.429133 | 8_2:+19150824 | None:intergenic |
| ATCTTGATGTCGACGACAGC+GGG | 0.442120 | 8_2:+19150550 | None:intergenic |
| AGGAAATTTCTTTCGTCGAA+TGG | 0.444436 | 8_2:-19150331 | Msa1238590:CDS |
| TTGGCTGGTTTAGGTGATGT+TGG | 0.452772 | 8_2:-19150025 | Msa1238590:CDS |
| GGATGCGTGGATCGGAATAG+AGG | 0.453423 | 8_2:+19150692 | None:intergenic |
| GTTTCAGTGCCGTGAAAAGA+AGG | 0.453560 | 8_2:+19150646 | None:intergenic |
| ATACAGCTTCAGTAGCAAAA+TGG | 0.454488 | 8_2:-19150860 | Msa1238590:intron |
| TGGGTCCCAATAACAAATTA+TGG | 0.455132 | 8_2:-19150411 | Msa1238590:CDS |
| TTGAAAGATTGCACTGATGT+AGG | 0.455403 | 8_2:-19149933 | Msa1238590:three_prime_UTR |
| GGTTTAGAGTCTCCGGGTTG+AGG | 0.464820 | 8_2:-19150438 | Msa1238590:CDS |
| AATTGTTGGAGCTTAAGAAA+TGG | 0.470611 | 8_2:-19150249 | Msa1238590:CDS |
| CTTGGTGACCAGCAACTTGG+TGG | 0.472242 | 8_2:+19150818 | None:intergenic |
| CCTCGTTCGTCGTCTTGAAG+AGG | 0.475806 | 8_2:+19150742 | None:intergenic |
| ATAAAGATGACTACTTTGTA+AGG | 0.484826 | 8_2:-19149742 | Msa1238590:three_prime_UTR |
| GCTCACGTCGTTGATGCTAA+AGG | 0.487055 | 8_2:-19150109 | Msa1238590:CDS |
| AGTCTCCGGGTTGAGGTCTG+TGG | 0.499059 | 8_2:-19150431 | Msa1238590:CDS |
| GCATTTCCGAATGTAGTCTT+CGG | 0.501435 | 8_2:+19150498 | None:intergenic |
| AATCTTCCGAAGACTACATT+CGG | 0.505169 | 8_2:-19150504 | Msa1238590:CDS |
| GGAGCTTAAGAAATGGTTTG+AGG | 0.507811 | 8_2:-19150242 | Msa1238590:CDS |
| GTCTCCGGGTTGAGGTCTGT+GGG | 0.516653 | 8_2:-19150430 | Msa1238590:CDS |
| TTGCTTGGTGACCAGCAACT+TGG | 0.518603 | 8_2:+19150815 | None:intergenic |
| GAACAATTTGAGAATATTGG+AGG | 0.521764 | 8_2:+19150669 | None:intergenic |
| ATGTAGTCTTCGGAAGATTG+AGG | 0.522222 | 8_2:+19150508 | None:intergenic |
| TGAGAAAGAATGATTATCAC+TGG | 0.524715 | 8_2:-19149966 | Msa1238590:three_prime_UTR |
| ATCTGCTGATGATGTAATGT+TGG | 0.526177 | 8_2:-19150359 | Msa1238590:CDS |
| TGAAAGATTGCACTGATGTA+GGG | 0.526991 | 8_2:-19149932 | Msa1238590:three_prime_UTR |
| GATGTCGACGACAGCGGGGT+TGG | 0.529251 | 8_2:+19150555 | None:intergenic |
| TTATTCGTGTTCTGTTCTTG+TGG | 0.531954 | 8_2:-19150200 | Msa1238590:CDS |
| GCTGTCGTCGACATCAAGAT+TGG | 0.540324 | 8_2:-19150547 | Msa1238590:CDS |
| AACAATTTGAGAATATTGGA+GGG | 0.542391 | 8_2:+19150670 | None:intergenic |
| TGTAGTCTTCGGAAGATTGA+GGG | 0.546321 | 8_2:+19150509 | None:intergenic |
| GGTGTAGAAAGCAAGTTCGT+TGG | 0.549867 | 8_2:+19150717 | None:intergenic |
| TCAAGATTGGTTCTCGAACA+TGG | 0.560230 | 8_2:-19150534 | Msa1238590:CDS |
| GATGCGTGGATCGGAATAGA+GGG | 0.565710 | 8_2:+19150693 | None:intergenic |
| AATTAGGGTTTAGAGTCTCC+GGG | 0.566602 | 8_2:-19150444 | Msa1238590:CDS |
| ATTGGAGGGGATGCGTGGAT+CGG | 0.574959 | 8_2:+19150684 | None:intergenic |
| ACAATTTGAGAATATTGGAG+GGG | 0.576270 | 8_2:+19150671 | None:intergenic |
| AAGATTCTCGATCTTTCTGA+AGG | 0.577993 | 8_2:+19150476 | None:intergenic |
| ATTGATCATAATTTCTTAGG+CGG | 0.581811 | 8_2:-19150082 | Msa1238590:CDS |
| AGAATATTGGAGGGGATGCG+TGG | 0.584053 | 8_2:+19150679 | None:intergenic |
| AGAACCGTCGGAGGCGTCAA+CGG | 0.588605 | 8_2:+19150624 | None:intergenic |
| TTTCCAGAATCGTCTATCAG+TGG | 0.594735 | 8_2:+19150775 | None:intergenic |
| ATATCTTCCAAAACAAGGTG+AGG | 0.604027 | 8_2:+19150592 | None:intergenic |
| AATTCCGCGATGTATATTAG+CGG | 0.604888 | 8_2:-19149882 | Msa1238590:three_prime_UTR |
| GATGGATAGATGAATAGACT+TGG | 0.609788 | 8_2:-19149837 | Msa1238590:three_prime_UTR |
| TTTCAGTGCCGTGAAAAGAA+GGG | 0.610037 | 8_2:+19150647 | None:intergenic |
| TGATGTAGGGAACAAATGAC+AGG | 0.615353 | 8_2:-19149919 | Msa1238590:three_prime_UTR |
| GAAACCGTTGACGCCTCCGA+CGG | 0.617951 | 8_2:-19150628 | Msa1238590:CDS |
| CCTCTTCAAGACGACGAACG+AGG | 0.625721 | 8_2:-19150742 | Msa1238590:CDS |
| AATCTTGATGTCGACGACAG+CGG | 0.639445 | 8_2:+19150549 | None:intergenic |
| ATGCGATATCTTCCAAAACA+AGG | 0.648535 | 8_2:+19150587 | None:intergenic |
| TATCTTCCAAAACAAGGTGA+GGG | 0.651339 | 8_2:+19150593 | None:intergenic |
| AGGGTGTAGACCAGAACCGT+CGG | 0.661282 | 8_2:+19150612 | None:intergenic |
| AATCGTCTATCAGTGGACCT+AGG | 0.661906 | 8_2:+19150782 | None:intergenic |
| GGGACCCACAGACCTCAACC+CGG | 0.672977 | 8_2:+19150426 | None:intergenic |
| GTGTAGACCAGAACCGTCGG+AGG | 0.689628 | 8_2:+19150615 | None:intergenic |
| GCGTGGATCGGAATAGAGGG+AGG | 0.703005 | 8_2:+19150696 | None:intergenic |
| TCTTGATGTCGACGACAGCG+GGG | 0.725668 | 8_2:+19150551 | None:intergenic |
| TCTTCCGCTAATATACATCG+CGG | 0.744266 | 8_2:+19149878 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTTTTTTTTTTTGAAT+CGG | + | chr8_2:19150797-19150816 | None:intergenic | 10.0% |
| !!! | ACAAATTTTTATATTCTTTA+GGG | - | chr8_2:19150923-19150942 | Msa1238590:intron | 10.0% |
| !!! | TAATTTTCTCAAATTATTAC+CGG | - | chr8_2:19149916-19149935 | Msa1238590:three_prime_UTR | 15.0% |
| !! | TATCATATTTACATAGTTTA+GGG | + | chr8_2:19150843-19150862 | None:intergenic | 15.0% |
| !! | TTATCATATTTACATAGTTT+AGG | + | chr8_2:19150844-19150863 | None:intergenic | 15.0% |
| !!! | GACAAATTTTTATATTCTTT+AGG | - | chr8_2:19150922-19150941 | Msa1238590:intron | 15.0% |
| !! | TTATTGTATTTATATGGTTT+AGG | - | chr8_2:19150951-19150970 | Msa1238590:intron | 15.0% |
| !! | AATCTTCTACAATAAAATTA+GGG | - | chr8_2:19151856-19151875 | Msa1238590:intron | 15.0% |
| !! | GATCTAATCTAAAGAATAAA+AGG | + | chr8_2:19149700-19149719 | None:intergenic | 20.0% |
| !! | TAATGAATAAACAAATTCGA+AGG | + | chr8_2:19150126-19150145 | None:intergenic | 20.0% |
| !!! | TTCGAATTTGTTTATTCATT+AGG | - | chr8_2:19150125-19150144 | Msa1238590:CDS | 20.0% |
| !! | AGAATATAGTCGAAAAATAA+AGG | - | chr8_2:19150278-19150297 | Msa1238590:CDS | 20.0% |
| !!! | GAAAAATAAAGGTTTTATCT+TGG | - | chr8_2:19150289-19150308 | Msa1238590:CDS | 20.0% |
| !! | TAAATTGACAGACTTTATAT+AGG | + | chr8_2:19150872-19150891 | None:intergenic | 20.0% |
| !!! | TAGTCTTTTATTAAGATGTT+AGG | - | chr8_2:19150890-19150909 | Msa1238590:intron | 20.0% |
| !!! | AGTCTTTTATTAAGATGTTA+GGG | - | chr8_2:19150891-19150910 | Msa1238590:intron | 20.0% |
| !! | GACTACTTATTGTATTTATA+TGG | - | chr8_2:19150945-19150964 | Msa1238590:intron | 20.0% |
| !! | AAACAAGAGTTATATGAAAA+GGG | + | chr8_2:19151379-19151398 | None:intergenic | 20.0% |
| !! | AAAACAAGAGTTATATGAAA+AGG | + | chr8_2:19151380-19151399 | None:intergenic | 20.0% |
| !! | GAATCTTCTACAATAAAATT+AGG | - | chr8_2:19151855-19151874 | Msa1238590:intron | 20.0% |
| !!! | TTCTTTGATTAAGTTTGTTA+AGG | - | chr8_2:19152262-19152281 | Msa1238590:intron | 20.0% |
| !!! | ATGATGCTTTAATTTCAATT+TGG | - | chr8_2:19152624-19152643 | Msa1238590:intron | 20.0% |
| ! | TTCGAAAAACAATAGTATCT+TGG | + | chr8_2:19149722-19149741 | None:intergenic | 25.0% |
| ! | AAAAGCTATGACTTTATTGA+TGG | + | chr8_2:19149749-19149768 | None:intergenic | 25.0% |
| !!! | ATAAAGTCATAGCTTTTTCT+TGG | - | chr8_2:19149752-19149771 | Msa1238590:three_prime_UTR | 25.0% |
| ! | TTCAGTGTAATTATATGTGT+CGG | + | chr8_2:19149891-19149910 | None:intergenic | 25.0% |
| ! | TATCACATAAAACGCAATTT+GGG | + | chr8_2:19150004-19150023 | None:intergenic | 25.0% |
| ! | TTATCACATAAAACGCAATT+TGG | + | chr8_2:19150005-19150024 | None:intergenic | 25.0% |
| !!! | TTACATGTCATGTTTTGATT+GGG | - | chr8_2:19150084-19150103 | Msa1238590:CDS | 25.0% |
| !!! | TTGTTGTTATTTGTGTTCAA+TGG | - | chr8_2:19151432-19151451 | Msa1238590:intron | 25.0% |
| ! | AACAATTTGAGAATATTGGA+GGG | + | chr8_2:19151648-19151667 | None:intergenic | 25.0% |
| ! | TTATGAGAAAGATGAAAAAG+AGG | - | chr8_2:19152139-19152158 | Msa1238590:intron | 25.0% |
| ! | GCTATTGATCATAATTTCTT+AGG | - | chr8_2:19152230-19152249 | Msa1238590:intron | 25.0% |
| ! | ATTGATCATAATTTCTTAGG+CGG | - | chr8_2:19152233-19152252 | Msa1238590:intron | 25.0% |
| !!! | TAAGTTTGTTAAGGATGTTT+TGG | - | chr8_2:19152271-19152290 | Msa1238590:intron | 25.0% |
| !! | TTTTTCTTAAAGCAGATAGA+TGG | - | chr8_2:19152460-19152479 | Msa1238590:intron | 25.0% |
| ! | ATAAAGATGACTACTTTGTA+AGG | - | chr8_2:19152573-19152592 | Msa1238590:intron | 25.0% |
| !!! | GATTACTAGAAAGTATGTTT+TGG | - | chr8_2:19152646-19152665 | Msa1238590:intron | 25.0% |
| ! | TTGCGTTTTATGTGATAACA+CGG | - | chr8_2:19150007-19150026 | Msa1238590:CDS | 30.0% |
| !!! | GTTACATGTCATGTTTTGAT+TGG | - | chr8_2:19150083-19150102 | Msa1238590:CDS | 30.0% |
| !!! | ATATAAGAGGTTTTGAGGTA+GGG | - | chr8_2:19150419-19150438 | Msa1238590:CDS | 30.0% |
| GTCTTACTGTTGATGTAAAA+CGG | - | chr8_2:19150475-19150494 | Msa1238590:CDS | 30.0% | |
| ! | TAAAACGGTGTTTTTCTGTT+TGG | - | chr8_2:19150490-19150509 | Msa1238590:CDS | 30.0% |
| GATGAAAAAATGCAGGAAAA+CGG | + | chr8_2:19150550-19150569 | None:intergenic | 30.0% | |
| ACCAAAAGAGCTAGAATTAA+GGG | + | chr8_2:19150639-19150658 | None:intergenic | 30.0% | |
| AACCAAAAGAGCTAGAATTA+AGG | + | chr8_2:19150640-19150659 | None:intergenic | 30.0% | |
| TAGGGACTAAATTGAAGAAA+AGG | + | chr8_2:19150825-19150844 | None:intergenic | 30.0% | |
| TTGAGTGATGGTTTATTCAT+TGG | - | chr8_2:19151008-19151027 | Msa1238590:intron | 30.0% | |
| GATTGAACTGAACAATATGT+AGG | + | chr8_2:19151212-19151231 | None:intergenic | 30.0% | |
| ACAATTTGAGAATATTGGAG+GGG | + | chr8_2:19151647-19151666 | None:intergenic | 30.0% | |
| GAACAATTTGAGAATATTGG+AGG | + | chr8_2:19151649-19151668 | None:intergenic | 30.0% | |
| AGGGAACAATTTGAGAATAT+TGG | + | chr8_2:19151652-19151671 | None:intergenic | 30.0% | |
| ! | AAATTGTTCCCTTCTTTTCA+CGG | - | chr8_2:19151660-19151679 | Msa1238590:intron | 30.0% |
| TCCATAAGAAACTTTCTATC+AGG | + | chr8_2:19151933-19151952 | None:intergenic | 30.0% | |
| !!! | ATGATGTAATGTTGGTTTTG+AGG | - | chr8_2:19151964-19151983 | Msa1238590:intron | 30.0% |
| AATTGTTGGAGCTTAAGAAA+TGG | - | chr8_2:19152066-19152085 | Msa1238590:intron | 30.0% | |
| TGAAAAAGAGGATGAGAAAA+AGG | - | chr8_2:19152151-19152170 | Msa1238590:intron | 30.0% | |
| GAAAAAGAGGATGAGAAAAA+GGG | - | chr8_2:19152152-19152171 | Msa1238590:intron | 30.0% | |
| TGAGAAAGAATGATTATCAC+TGG | - | chr8_2:19152349-19152368 | Msa1238590:intron | 30.0% | |
| ! | GTAATTATATGTGTCGGTGT+TGG | + | chr8_2:19149885-19149904 | None:intergenic | 35.0% |
| CCACAATGAAGAAAAAGATG+TGG | + | chr8_2:19150045-19150064 | None:intergenic | 35.0% | |
| ! | CCACATCTTTTTCTTCATTG+TGG | - | chr8_2:19150042-19150061 | Msa1238590:CDS | 35.0% |
| ! | TCTTTTTCTTCATTGTGGAG+TGG | - | chr8_2:19150047-19150066 | Msa1238590:CDS | 35.0% |
| AAATTAACCTATGACCGTTC+CGG | + | chr8_2:19150185-19150204 | None:intergenic | 35.0% | |
| TAATTTGGCATGCAACAACA+TGG | - | chr8_2:19150199-19150218 | Msa1238590:CDS | 35.0% | |
| AATTTGGCATGCAACAACAT+GGG | - | chr8_2:19150200-19150219 | Msa1238590:CDS | 35.0% | |
| ! | TGACAGAATTTTCAACAACG+AGG | - | chr8_2:19150243-19150262 | Msa1238590:CDS | 35.0% |
| TACCTCAAAAAACAGTCTCT+CGG | + | chr8_2:19150375-19150394 | None:intergenic | 35.0% | |
| !!! | GAGACTGTTTTTTGAGGTAA+CGG | - | chr8_2:19150376-19150395 | Msa1238590:CDS | 35.0% |
| !!! | AGACTGTTTTTTGAGGTAAC+GGG | - | chr8_2:19150377-19150396 | Msa1238590:CDS | 35.0% |
| !!! | GATATAAGAGGTTTTGAGGT+AGG | - | chr8_2:19150418-19150437 | Msa1238590:CDS | 35.0% |
| !!! | TCCCTTAATTCTAGCTCTTT+TGG | - | chr8_2:19150635-19150654 | Msa1238590:CDS | 35.0% |
| !!! | AATTCTAGCTCTTTTGGTTG+TGG | - | chr8_2:19150641-19150660 | Msa1238590:CDS | 35.0% |
| ACAAAGGAACAGTATATGTG+CGG | + | chr8_2:19150705-19150724 | None:intergenic | 35.0% | |
| ACGGGCATAGAAAAATACAA+AGG | + | chr8_2:19150721-19150740 | None:intergenic | 35.0% | |
| ACAAAAACTTGCGGACAAAA+CGG | + | chr8_2:19150740-19150759 | None:intergenic | 35.0% | |
| GTAAGACACACAAAAACTTG+CGG | + | chr8_2:19150749-19150768 | None:intergenic | 35.0% | |
| !! | GAAGAGAGCGTTATTGTTTA+TGG | - | chr8_2:19150983-19151002 | Msa1238590:intron | 35.0% |
| TTGTTTATGGACTTGAGTGA+TGG | - | chr8_2:19150996-19151015 | Msa1238590:intron | 35.0% | |
| GCACAGACTATCAAATTAGA+GGG | + | chr8_2:19151298-19151317 | None:intergenic | 35.0% | |
| AGCACAGACTATCAAATTAG+AGG | + | chr8_2:19151299-19151318 | None:intergenic | 35.0% | |
| AAACCAGAAAATGATGAGCA+GGG | + | chr8_2:19151349-19151368 | None:intergenic | 35.0% | |
| AAAACCAGAAAATGATGAGC+AGG | + | chr8_2:19151350-19151369 | None:intergenic | 35.0% | |
| ATACAGCTTCAGTAGCAAAA+TGG | - | chr8_2:19151455-19151474 | Msa1238590:intron | 35.0% | |
| TATCTTCCAAAACAAGGTGA+GGG | + | chr8_2:19151725-19151744 | None:intergenic | 35.0% | |
| ATATCTTCCAAAACAAGGTG+AGG | + | chr8_2:19151726-19151745 | None:intergenic | 35.0% | |
| ATGCGATATCTTCCAAAACA+AGG | + | chr8_2:19151731-19151750 | None:intergenic | 35.0% | |
| AATCTTCCGAAGACTACATT+CGG | - | chr8_2:19151811-19151830 | Msa1238590:intron | 35.0% | |
| AAGATTCTCGATCTTTCTGA+AGG | + | chr8_2:19151842-19151861 | None:intergenic | 35.0% | |
| ! | AAATTAGGGTTTAGAGTCTC+CGG | - | chr8_2:19151870-19151889 | Msa1238590:intron | 35.0% |
| TGGGTCCCAATAACAAATTA+TGG | - | chr8_2:19151904-19151923 | Msa1238590:intron | 35.0% | |
| !! | GGCTGCCATAATTTGTTATT+GGG | + | chr8_2:19151912-19151931 | None:intergenic | 35.0% |
| !! | AGGCTGCCATAATTTGTTAT+TGG | + | chr8_2:19151913-19151932 | None:intergenic | 35.0% |
| GCCTGATAGAAAGTTTCTTA+TGG | - | chr8_2:19151929-19151948 | Msa1238590:intron | 35.0% | |
| ! | ATCTGCTGATGATGTAATGT+TGG | - | chr8_2:19151956-19151975 | Msa1238590:intron | 35.0% |
| AGGAAATTTCTTTCGTCGAA+TGG | - | chr8_2:19151984-19152003 | Msa1238590:intron | 35.0% | |
| !!! | ATGAGCCTGATGTTGTTTTT+GGG | - | chr8_2:19152015-19152034 | Msa1238590:intron | 35.0% |
| !!! | TGATGTTGTTTTTGGGTCTA+GGG | - | chr8_2:19152022-19152041 | Msa1238590:intron | 35.0% |
| TTATTCGTGTTCTGTTCTTG+TGG | - | chr8_2:19152115-19152134 | Msa1238590:intron | 35.0% | |
| !!! | TTTGTTAAGGATGTTTTGGC+TGG | - | chr8_2:19152275-19152294 | Msa1238590:intron | 35.0% |
| ! | TTGAAAGATTGCACTGATGT+AGG | - | chr8_2:19152382-19152401 | Msa1238590:intron | 35.0% |
| ! | TGAAAGATTGCACTGATGTA+GGG | - | chr8_2:19152383-19152402 | Msa1238590:intron | 35.0% |
| AATTCCGCGATGTATATTAG+CGG | - | chr8_2:19152433-19152452 | Msa1238590:intron | 35.0% | |
| GATGGATAGATGAATAGACT+TGG | - | chr8_2:19152478-19152497 | Msa1238590:intron | 35.0% | |
| ACGCAAGATTCATTCTTGTG+GGG | + | chr8_2:19149798-19149817 | None:intergenic | 40.0% | |
| CACGCAAGATTCATTCTTGT+GGG | + | chr8_2:19149799-19149818 | None:intergenic | 40.0% | |
| ACACGCAAGATTCATTCTTG+TGG | + | chr8_2:19149800-19149819 | None:intergenic | 40.0% | |
| ! | CGTTTTATGTGATAACACGG+CGG | - | chr8_2:19150010-19150029 | Msa1238590:CDS | 40.0% |
| !! | TCATTAGGAGTGTTGTAGTC+AGG | - | chr8_2:19150140-19150159 | Msa1238590:CDS | 40.0% |
| AAGAATAAGAGGATCCGGAA+CGG | - | chr8_2:19150168-19150187 | Msa1238590:CDS | 40.0% | |
| GGAACGGTCATAGGTTAATT+TGG | - | chr8_2:19150184-19150203 | Msa1238590:CDS | 40.0% | |
| TGCAACAACATGGGTGTTTA+TGG | - | chr8_2:19150209-19150228 | Msa1238590:CDS | 40.0% | |
| ATGGGTGTTTATGGAAAGCT+AGG | - | chr8_2:19150218-19150237 | Msa1238590:CDS | 40.0% | |
| CACTCATAGAACAAACAAGC+TGG | + | chr8_2:19150342-19150361 | None:intergenic | 40.0% | |
| ! | CAGCTTGTTTGTTCTATGAG+TGG | - | chr8_2:19150340-19150359 | Msa1238590:CDS | 40.0% |
| !!! | ATCCGAGAGACTGTTTTTTG+AGG | - | chr8_2:19150370-19150389 | Msa1238590:CDS | 40.0% |
| !!! | GTTTTTTGAGGTAACGGGTA+TGG | - | chr8_2:19150382-19150401 | Msa1238590:CDS | 40.0% |
| ! | TGGCGATATAAGAGGTTTTG+AGG | - | chr8_2:19150414-19150433 | Msa1238590:CDS | 40.0% |
| GAGGTAGGGATATTCTATGT+TGG | - | chr8_2:19150433-19150452 | Msa1238590:CDS | 40.0% | |
| AGCTCAGCAAACAAATGATG+AGG | + | chr8_2:19150526-19150545 | None:intergenic | 40.0% | |
| ! | TTTTCATCTGTCCCCTGTTA+TGG | - | chr8_2:19150562-19150581 | Msa1238590:CDS | 40.0% |
| TTTCATCTGTCCCCTGTTAT+GGG | - | chr8_2:19150563-19150582 | Msa1238590:CDS | 40.0% | |
| AGTAGACAAACTAACACCCA+AGG | + | chr8_2:19150589-19150608 | None:intergenic | 40.0% | |
| !!! | ATTTTGGGGTTAAGGTGGTT+TGG | - | chr8_2:19150670-19150689 | Msa1238590:CDS | 40.0% |
| !!! | TTTTGGGGTTAAGGTGGTTT+GGG | - | chr8_2:19150671-19150690 | Msa1238590:CDS | 40.0% |
| CAAAAACTTGCGGACAAAAC+GGG | + | chr8_2:19150739-19150758 | None:intergenic | 40.0% | |
| TGTAAGCATGCTGTAGACTA+AGG | - | chr8_2:19151043-19151062 | Msa1238590:intron | 40.0% | |
| CAATCTATGTCCCTCTAGTT+CGG | - | chr8_2:19151227-19151246 | Msa1238590:intron | 40.0% | |
| ACCAATAACACCGAACTAGA+GGG | + | chr8_2:19151240-19151259 | None:intergenic | 40.0% | |
| AACCAATAACACCGAACTAG+AGG | + | chr8_2:19151241-19151260 | None:intergenic | 40.0% | |
| !! | GTTCGGTGTTATTGGTTTGA+TGG | - | chr8_2:19151244-19151263 | Msa1238590:intron | 40.0% |
| ! | CTAGGATTCCAGTTTTTGCT+TGG | + | chr8_2:19151518-19151537 | None:intergenic | 40.0% |
| CAAGCAAAAACTGGAATCCT+AGG | - | chr8_2:19151516-19151535 | Msa1238590:intron | 40.0% | |
| TTTCCAGAATCGTCTATCAG+TGG | + | chr8_2:19151543-19151562 | None:intergenic | 40.0% | |
| TTTCAGTGCCGTGAAAAGAA+GGG | + | chr8_2:19151671-19151690 | None:intergenic | 40.0% | |
| ! | TCAAGATTGGTTCTCGAACA+TGG | - | chr8_2:19151781-19151800 | Msa1238590:intron | 40.0% |
| TGTAGTCTTCGGAAGATTGA+GGG | + | chr8_2:19151809-19151828 | None:intergenic | 40.0% | |
| ATGTAGTCTTCGGAAGATTG+AGG | + | chr8_2:19151810-19151829 | None:intergenic | 40.0% | |
| GCATTTCCGAATGTAGTCTT+CGG | + | chr8_2:19151820-19151839 | None:intergenic | 40.0% | |
| ! | AATTAGGGTTTAGAGTCTCC+GGG | - | chr8_2:19151871-19151890 | Msa1238590:intron | 40.0% |
| !!! | GATGAGCCTGATGTTGTTTT+TGG | - | chr8_2:19152014-19152033 | Msa1238590:intron | 40.0% |
| CTAGACCCAAAAACAACATC+AGG | + | chr8_2:19152023-19152042 | None:intergenic | 40.0% | |
| !!! | CTGATGTTGTTTTTGGGTCT+AGG | - | chr8_2:19152021-19152040 | Msa1238590:intron | 40.0% |
| ! | TAGGGTTTTTGTTCCTGTTC+TGG | - | chr8_2:19152040-19152059 | Msa1238590:intron | 40.0% |
| GGAGCTTAAGAAATGGTTTG+AGG | - | chr8_2:19152073-19152092 | Msa1238590:intron | 40.0% | |
| !!! | AAGGATGTTTTGGCTGGTTT+AGG | - | chr8_2:19152281-19152300 | Msa1238590:intron | 40.0% |
| TGATGTAGGGAACAAATGAC+AGG | - | chr8_2:19152396-19152415 | Msa1238590:intron | 40.0% | |
| TCTTCCGCTAATATACATCG+CGG | + | chr8_2:19152440-19152459 | None:intergenic | 40.0% | |
| TTGTGGGGATTCTACTGAGA+AGG | + | chr8_2:19149783-19149802 | None:intergenic | 45.0% | |
| ACACGATACATGTCTGACAG+CGG | + | chr8_2:19149862-19149881 | None:intergenic | 45.0% | |
| CAATTTGGGTAGCTCTCATG+GGG | + | chr8_2:19149990-19150009 | None:intergenic | 45.0% | |
| GCAATTTGGGTAGCTCTCAT+GGG | + | chr8_2:19149991-19150010 | None:intergenic | 45.0% | |
| TTTATGTGATAACACGGCGG+TGG | - | chr8_2:19150013-19150032 | Msa1238590:CDS | 45.0% | |
| GTGGAGTGGCAATGAATGTT+TGG | - | chr8_2:19150061-19150080 | Msa1238590:CDS | 45.0% | |
| !! | TTAGGAGTGTTGTAGTCAGG+AGG | - | chr8_2:19150143-19150162 | Msa1238590:CDS | 45.0% |
| AGGCGAAGAATAAGAGGATC+CGG | - | chr8_2:19150163-19150182 | Msa1238590:CDS | 45.0% | |
| GGGGACAGATGAAAAAATGC+AGG | + | chr8_2:19150557-19150576 | None:intergenic | 45.0% | |
| !!! | TTGGTTGTGGTGCTGCATTT+TGG | - | chr8_2:19150654-19150673 | Msa1238590:CDS | 45.0% |
| !!! | TGGTTGTGGTGCTGCATTTT+GGG | - | chr8_2:19150655-19150674 | Msa1238590:CDS | 45.0% |
| !! | GCTGTAGACTAAGGTACTGA+TGG | - | chr8_2:19151052-19151071 | Msa1238590:intron | 45.0% |
| !! | GTAGACTAAGGTACTGATGG+TGG | - | chr8_2:19151055-19151074 | Msa1238590:intron | 45.0% |
| !! | TCCCTCTAGTTCGGTGTTAT+TGG | - | chr8_2:19151236-19151255 | Msa1238590:intron | 45.0% |
| AGAAAATGATGAGCAGGGAG+AGG | + | chr8_2:19151344-19151363 | None:intergenic | 45.0% | |
| ! | TCTCCCTGCTCATCATTTTC+TGG | - | chr8_2:19151343-19151362 | Msa1238590:intron | 45.0% |
| AATCGTCTATCAGTGGACCT+AGG | + | chr8_2:19151536-19151555 | None:intergenic | 45.0% | |
| GGTGTAGAAAGCAAGTTCGT+TGG | + | chr8_2:19151601-19151620 | None:intergenic | 45.0% | |
| GTTTCAGTGCCGTGAAAAGA+AGG | + | chr8_2:19151672-19151691 | None:intergenic | 45.0% | |
| !! | TCTACACCCTCACCTTGTTT+TGG | - | chr8_2:19151716-19151735 | Msa1238590:intron | 45.0% |
| AATCTTGATGTCGACGACAG+CGG | + | chr8_2:19151769-19151788 | None:intergenic | 45.0% | |
| ! | GGTTTTTGTTCCTGTTCTGG+AGG | - | chr8_2:19152043-19152062 | Msa1238590:intron | 45.0% |
| !! | TCCTGTTCTGGAGGAATTGT+TGG | - | chr8_2:19152052-19152071 | Msa1238590:intron | 45.0% |
| TCCAACAATTCCTCCAGAAC+AGG | + | chr8_2:19152056-19152075 | None:intergenic | 45.0% | |
| !! | TTGGCTGGTTTAGGTGATGT+TGG | - | chr8_2:19152290-19152309 | Msa1238590:intron | 45.0% |
| TGCGTGTCGAAACGTAAGCA+CGG | - | chr8_2:19149813-19149832 | Msa1238590:three_prime_UTR | 50.0% | |
| ACGTAAGCACGGACATTCCT+CGG | - | chr8_2:19149824-19149843 | Msa1238590:three_prime_UTR | 50.0% | |
| CACGATACATGTCTGACAGC+GGG | + | chr8_2:19149861-19149880 | None:intergenic | 50.0% | |
| ACGGATTCAGACACAGACAC+TGG | + | chr8_2:19149959-19149978 | None:intergenic | 50.0% | |
| CTCTCATGGGGTATGAAGCA+CGG | + | chr8_2:19149978-19149997 | None:intergenic | 50.0% | |
| CGCAATTTGGGTAGCTCTCA+TGG | + | chr8_2:19149992-19150011 | None:intergenic | 50.0% | |
| GTCAGGAGGCGAAGAATAAG+AGG | - | chr8_2:19150157-19150176 | Msa1238590:CDS | 50.0% | |
| AACACCCAAGGCCCATAACA+GGG | + | chr8_2:19150577-19150596 | None:intergenic | 50.0% | |
| TAACACCCAAGGCCCATAAC+AGG | + | chr8_2:19150578-19150597 | None:intergenic | 50.0% | |
| !! | GTCTACTGTGTTGCTTGTGC+AGG | - | chr8_2:19150602-19150621 | Msa1238590:CDS | 50.0% |
| !!! | GGTTGTGGTGCTGCATTTTG+GGG | - | chr8_2:19150656-19150675 | Msa1238590:CDS | 50.0% |
| !!! | GGTGCTGCATTTTGGGGTTA+AGG | - | chr8_2:19150662-19150681 | Msa1238590:CDS | 50.0% |
| !!! | GCTGCATTTTGGGGTTAAGG+TGG | - | chr8_2:19150665-19150684 | Msa1238590:CDS | 50.0% |
| !! | GACTAAGGTACTGATGGTGG+TGG | - | chr8_2:19151058-19151077 | Msa1238590:intron | 50.0% |
| !! | AGGTACTGATGGTGGTGGTA+AGG | - | chr8_2:19151063-19151082 | Msa1238590:intron | 50.0% |
| ! | TTGCTTGGTGACCAGCAACT+TGG | + | chr8_2:19151503-19151522 | None:intergenic | 50.0% |
| GCTGGTCACCAAGCAAAAAC+TGG | - | chr8_2:19151507-19151526 | Msa1238590:intron | 50.0% | |
| GGTCCACTGATAGACGATTC+TGG | - | chr8_2:19151537-19151556 | Msa1238590:intron | 50.0% | |
| GATGCGTGGATCGGAATAGA+GGG | + | chr8_2:19151625-19151644 | None:intergenic | 50.0% | |
| AGAATATTGGAGGGGATGCG+TGG | + | chr8_2:19151639-19151658 | None:intergenic | 50.0% | |
| ATCTTGATGTCGACGACAGC+GGG | + | chr8_2:19151768-19151787 | None:intergenic | 50.0% | |
| GCTGTCGTCGACATCAAGAT+TGG | - | chr8_2:19151768-19151787 | Msa1238590:intron | 50.0% | |
| GCTCACGTCGTTGATGCTAA+AGG | - | chr8_2:19152206-19152225 | Msa1238590:intron | 50.0% | |
| GCACGGACATTCCTCGGATT+AGG | - | chr8_2:19149830-19149849 | Msa1238590:three_prime_UTR | 55.0% | |
| AGAGGATCCGGAACGGTCAT+AGG | - | chr8_2:19150175-19150194 | Msa1238590:CDS | 55.0% | |
| ! | TGCGCTGGTGGCGATATAAG+AGG | - | chr8_2:19150406-19150425 | Msa1238590:CDS | 55.0% |
| TGGATTTGCGCTGCTGTTCG+AGG | - | chr8_2:19150453-19150472 | Msa1238590:CDS | 55.0% | |
| TGTCCCCTGTTATGGGCCTT+GGG | - | chr8_2:19150570-19150589 | Msa1238590:CDS | 55.0% | |
| ACACCCAAGGCCCATAACAG+GGG | + | chr8_2:19150576-19150595 | None:intergenic | 55.0% | |
| ! | GGGGTTAAGGTGGTTTGGGA+AGG | - | chr8_2:19150675-19150694 | Msa1238590:CDS | 55.0% |
| TGATGAGCAGGGAGAGGAGA+GGG | + | chr8_2:19151338-19151357 | None:intergenic | 55.0% | |
| ATGATGAGCAGGGAGAGGAG+AGG | + | chr8_2:19151339-19151358 | None:intergenic | 55.0% | |
| ATCCCAGACCACCAAGTTGC+TGG | - | chr8_2:19151489-19151508 | Msa1238590:intron | 55.0% | |
| ! | GACCAGCAACTTGGTGGTCT+GGG | + | chr8_2:19151494-19151513 | None:intergenic | 55.0% |
| ! | TGACCAGCAACTTGGTGGTC+TGG | + | chr8_2:19151495-19151514 | None:intergenic | 55.0% |
| ! | CTTGGTGACCAGCAACTTGG+TGG | + | chr8_2:19151500-19151519 | None:intergenic | 55.0% |
| CCTCGTTCGTCGTCTTGAAG+AGG | + | chr8_2:19151576-19151595 | None:intergenic | 55.0% | |
| CCTCTTCAAGACGACGAACG+AGG | - | chr8_2:19151573-19151592 | Msa1238590:intron | 55.0% | |
| GGATGCGTGGATCGGAATAG+AGG | + | chr8_2:19151626-19151645 | None:intergenic | 55.0% | |
| ATTGGAGGGGATGCGTGGAT+CGG | + | chr8_2:19151634-19151653 | None:intergenic | 55.0% | |
| AGGGTGTAGACCAGAACCGT+CGG | + | chr8_2:19151706-19151725 | None:intergenic | 55.0% | |
| !! | GACAGCGGGGTTGGTGTAAT+TGG | + | chr8_2:19151754-19151773 | None:intergenic | 55.0% |
| TCTTGATGTCGACGACAGCG+GGG | + | chr8_2:19151767-19151786 | None:intergenic | 55.0% | |
| ! | GGTTTAGAGTCTCCGGGTTG+AGG | - | chr8_2:19151877-19151896 | Msa1238590:intron | 55.0% |
| GGACACTGACACGTCGACAC+CGG | + | chr8_2:19149938-19149957 | None:intergenic | 60.0% | |
| !! | GGTAACGGGTATGGTTGCGC+TGG | - | chr8_2:19150391-19150410 | Msa1238590:CDS | 60.0% |
| AACGGGTATGGTTGCGCTGG+TGG | - | chr8_2:19150394-19150413 | Msa1238590:CDS | 60.0% | |
| CTGTCCCCTGTTATGGGCCT+TGG | - | chr8_2:19150569-19150588 | Msa1238590:CDS | 60.0% | |
| GATGAGCAGGGAGAGGAGAG+GGG | + | chr8_2:19151337-19151356 | None:intergenic | 60.0% | |
| GCGTGGATCGGAATAGAGGG+AGG | + | chr8_2:19151622-19151641 | None:intergenic | 60.0% | |
| GAAACCGTTGACGCCTCCGA+CGG | - | chr8_2:19151687-19151706 | Msa1238590:intron | 60.0% | |
| !! | AGAACCGTCGGAGGCGTCAA+CGG | + | chr8_2:19151694-19151713 | None:intergenic | 60.0% |
| GTGTAGACCAGAACCGTCGG+AGG | + | chr8_2:19151703-19151722 | None:intergenic | 60.0% | |
| ! | AGTCTCCGGGTTGAGGTCTG+TGG | - | chr8_2:19151884-19151903 | Msa1238590:intron | 60.0% |
| ! | GTCTCCGGGTTGAGGTCTGT+GGG | - | chr8_2:19151885-19151904 | Msa1238590:intron | 60.0% |
| AGCGGGACTCGCCTAATCCG+AGG | + | chr8_2:19149844-19149863 | None:intergenic | 65.0% | |
| GTTGACGCCTCCGACGGTTC+TGG | - | chr8_2:19151693-19151712 | Msa1238590:intron | 65.0% | |
| GATGTCGACGACAGCGGGGT+TGG | + | chr8_2:19151763-19151782 | None:intergenic | 65.0% | |
| GGGACCCACAGACCTCAACC+CGG | + | chr8_2:19151892-19151911 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 19149659 | 19152678 | 19149659 | ID=Msa1238590;Name=Msa1238590 |
| chr8_2 | mRNA | 19149659 | 19152678 | 19149659 | ID=Msa1238590-mRNA-1;Parent=Msa1238590;Name=Msa1238590-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0.33|0.33|1|1|3|341|296 |
| chr8_2 | exon | 19149659 | 19150876 | 19149659 | ID=Msa1238590-mRNA-1:exon:7121;Parent=Msa1238590-mRNA-1 |
| chr8_2 | exon | 19152606 | 19152613 | 19152606 | ID=Msa1238590-mRNA-1:exon:7120;Parent=Msa1238590-mRNA-1 |
| chr8_2 | exon | 19152673 | 19152678 | 19152673 | ID=Msa1238590-mRNA-1:exon:7119;Parent=Msa1238590-mRNA-1 |
| chr8_2 | CDS | 19152673 | 19152678 | 19152673 | ID=Msa1238590-mRNA-1:cds;Parent=Msa1238590-mRNA-1 |
| chr8_2 | CDS | 19152606 | 19152613 | 19152606 | ID=Msa1238590-mRNA-1:cds;Parent=Msa1238590-mRNA-1 |
| chr8_2 | CDS | 19150000 | 19150876 | 19150000 | ID=Msa1238590-mRNA-1:cds;Parent=Msa1238590-mRNA-1 |
| chr8_2 | three_prime_UTR | 19149659 | 19149999 | 19149659 | ID=Msa1238590-mRNA-1:three_prime_utr;Parent=Msa1238590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
