Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1319510 | XP_003627621.2 | 93.031 | 287 | 20 | 0 | 8 | 294 | 1 | 287 | 0.0 | 531 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1319510 | sp|Q9FLT2|IPMKB_ARATH | 52.669 | 281 | 122 | 4 | 11 | 280 | 2 | 282 | 8.45e-106 | 313 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1319510 | G7LCN0 | 93.031 | 287 | 20 | 0 | 8 | 294 | 1 | 287 | 0.0 | 531 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1238590 | Msa1319510 | 0.973721 | 6.530730e-137 | -8.615850e-47 |
| Msa0420530 | Msa1319510 | 0.803835 | 2.884374e-49 | -8.615850e-47 |
| Msa0444170 | Msa1319510 | 0.802921 | 4.458805e-49 | -8.615850e-47 |
| Msa0301260 | Msa1319510 | -0.811088 | 8.339593e-51 | -8.615850e-47 |
| Msa0491730 | Msa1319510 | 0.803355 | 3.627321e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1319510 | MtrunA17_Chr8g0349961 | 93.031 | 287 | 20 | 0 | 8 | 294 | 1 | 287 | 0.0 | 531 |
| Msa1319510 | MtrunA17_Chr8g0353241 | 90.175 | 285 | 28 | 0 | 8 | 292 | 1 | 285 | 0.0 | 509 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1319510 | AT5G61760.1 | 52.669 | 281 | 122 | 4 | 11 | 280 | 2 | 282 | 8.59e-107 | 313 |
| Msa1319510 | AT5G61760.2 | 52.669 | 281 | 122 | 4 | 11 | 280 | 2 | 282 | 8.59e-107 | 313 |
| Msa1319510 | AT5G07370.2 | 50.000 | 280 | 129 | 5 | 9 | 280 | 1 | 277 | 2.25e-97 | 288 |
| Msa1319510 | AT5G07370.3 | 50.000 | 280 | 129 | 5 | 9 | 280 | 1 | 277 | 2.25e-97 | 288 |
| Msa1319510 | AT5G07370.1 | 50.000 | 280 | 129 | 5 | 9 | 280 | 1 | 277 | 2.25e-97 | 288 |
| Msa1319510 | AT5G07370.4 | 50.000 | 280 | 129 | 5 | 9 | 280 | 1 | 277 | 2.25e-97 | 288 |
Find 80 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATCTTCTACAATAAAATT+AGG | 0.165601 | 8_4:-22733301 | Msa1319510:CDS |
| AGGGAACAATTTGAGAATAT+TGG | 0.214068 | 8_4:+22733507 | None:intergenic |
| AGGCTGCCATAATTTGTTAT+TGG | 0.215550 | 8_4:+22733246 | None:intergenic |
| ATGATGCTTTAATTTCAATT+TGG | 0.241118 | 8_4:-22732533 | Msa1319510:three_prime_UTR |
| GACAGCGGGGTTGGTGTAAT+TGG | 0.254752 | 8_4:+22733405 | None:intergenic |
| GCTATTGATCATAATTTCTT+AGG | 0.268767 | 8_4:-22732926 | Msa1319510:CDS |
| GGCTGCCATAATTTGTTATT+GGG | 0.280852 | 8_4:+22733247 | None:intergenic |
| TCTACACCCTCACCTTGTTT+TGG | 0.306627 | 8_4:-22733440 | Msa1319510:CDS |
| GCCTGATAGAAAGTTTCTTA+TGG | 0.324838 | 8_4:-22733227 | Msa1319510:CDS |
| AATCTTCTACAATAAAATTA+GGG | 0.330691 | 8_4:-22733300 | Msa1319510:CDS |
| TCCTGTTCTGGAGGAATTGT+TGG | 0.355005 | 8_4:-22733104 | Msa1319510:CDS |
| TTCTTTGATTAAGTTTGTTA+AGG | 0.365539 | 8_4:-22732894 | Msa1319510:CDS |
| TCCATAAGAAACTTTCTATC+AGG | 0.370078 | 8_4:+22733226 | None:intergenic |
| TAAGTTTGTTAAGGATGTTT+TGG | 0.378614 | 8_4:-22732885 | Msa1319510:CDS |
| TGACCAGCAACTTGGTGGTC+TGG | 0.381341 | 8_4:+22733664 | None:intergenic |
| GATTACTAGAAAGTATGTTT+TGG | 0.391004 | 8_4:-22732511 | Msa1319510:three_prime_UTR |
| GGTCCACTGATAGACGATTC+TGG | 0.393481 | 8_4:-22733619 | Msa1319510:CDS |
| GTTGACGCCTCCGACGGTTC+TGG | 0.394613 | 8_4:-22733463 | Msa1319510:CDS |
| ATCCCAGACCACCAAGTTGC+TGG | 0.418559 | 8_4:-22733667 | Msa1319510:CDS |
| TCCAACAATTCCTCCAGAAC+AGG | 0.421186 | 8_4:+22733103 | None:intergenic |
| AAATTAGGGTTTAGAGTCTC+CGG | 0.423865 | 8_4:-22733286 | Msa1319510:CDS |
| GACCAGCAACTTGGTGGTCT+GGG | 0.429133 | 8_4:+22733665 | None:intergenic |
| AATAAGATGACTACTTTGTA+AGG | 0.441505 | 8_4:-22732584 | Msa1319510:three_prime_UTR |
| ATCTTGATGTCGACGACAGC+GGG | 0.442120 | 8_4:+22733391 | None:intergenic |
| AGGAAATTTCTTTCGTCGAA+TGG | 0.444436 | 8_4:-22733172 | Msa1319510:CDS |
| TTGGCTGGTTTAGGTGATGT+TGG | 0.452772 | 8_4:-22732866 | Msa1319510:CDS |
| GGATGCGTGGATCGGAATAG+AGG | 0.453423 | 8_4:+22733533 | None:intergenic |
| GTTTCAGTGCCGTGAAAAGA+AGG | 0.453560 | 8_4:+22733487 | None:intergenic |
| ATACAGCTTCAGTAGCAAAA+TGG | 0.454488 | 8_4:-22733701 | Msa1319510:intron |
| TGGGTCCCAATAACAAATTA+TGG | 0.455132 | 8_4:-22733252 | Msa1319510:CDS |
| TTGAAAGATTGCACTGATGT+AGG | 0.455403 | 8_4:-22732774 | Msa1319510:three_prime_UTR |
| GGTTTAGAGTCTCCGGGTTG+AGG | 0.464820 | 8_4:-22733279 | Msa1319510:CDS |
| AATTGTTGGAGCTTAAGAAA+TGG | 0.470611 | 8_4:-22733090 | Msa1319510:CDS |
| CTTGGTGACCAGCAACTTGG+TGG | 0.472242 | 8_4:+22733659 | None:intergenic |
| CCTCGTTCGTCGTCTTGAAG+AGG | 0.475806 | 8_4:+22733583 | None:intergenic |
| GCTCACGTCGTTGATGCTAA+AGG | 0.487055 | 8_4:-22732950 | Msa1319510:CDS |
| AGTCTCCGGGTTGAGGTCTG+TGG | 0.499059 | 8_4:-22733272 | Msa1319510:CDS |
| GCATTTCCGAATGTAGTCTT+CGG | 0.501435 | 8_4:+22733339 | None:intergenic |
| AATCTTCCGAAGACTACATT+CGG | 0.505169 | 8_4:-22733345 | Msa1319510:CDS |
| GGAGCTTAAGAAATGGTTTG+AGG | 0.507811 | 8_4:-22733083 | Msa1319510:CDS |
| GTCTCCGGGTTGAGGTCTGT+GGG | 0.516653 | 8_4:-22733271 | Msa1319510:CDS |
| TTGCTTGGTGACCAGCAACT+TGG | 0.518603 | 8_4:+22733656 | None:intergenic |
| GAACAATTTGAGAATATTGG+AGG | 0.521764 | 8_4:+22733510 | None:intergenic |
| ATGTAGTCTTCGGAAGATTG+AGG | 0.522222 | 8_4:+22733349 | None:intergenic |
| TGAGAAAGAATGATTATCAC+TGG | 0.524715 | 8_4:-22732807 | Msa1319510:three_prime_UTR |
| ATCTGCTGATGATGTAATGT+TGG | 0.526177 | 8_4:-22733200 | Msa1319510:CDS |
| TGAAAGATTGCACTGATGTA+GGG | 0.526991 | 8_4:-22732773 | Msa1319510:three_prime_UTR |
| GATGTCGACGACAGCGGGGT+TGG | 0.529251 | 8_4:+22733396 | None:intergenic |
| TTATTCGTGTTCTGTTCTTG+TGG | 0.531954 | 8_4:-22733041 | Msa1319510:CDS |
| GCTGTCGTCGACATCAAGAT+TGG | 0.540324 | 8_4:-22733388 | Msa1319510:CDS |
| AACAATTTGAGAATATTGGA+GGG | 0.542391 | 8_4:+22733511 | None:intergenic |
| TGTAGTCTTCGGAAGATTGA+GGG | 0.546321 | 8_4:+22733350 | None:intergenic |
| GGTGTAGAAAGCAAGTTCGT+TGG | 0.549867 | 8_4:+22733558 | None:intergenic |
| TCAAGATTGGTTCTCGAACA+TGG | 0.560230 | 8_4:-22733375 | Msa1319510:CDS |
| GATGCGTGGATCGGAATAGA+GGG | 0.565710 | 8_4:+22733534 | None:intergenic |
| AATTAGGGTTTAGAGTCTCC+GGG | 0.566602 | 8_4:-22733285 | Msa1319510:CDS |
| ATTGGAGGGGATGCGTGGAT+CGG | 0.574959 | 8_4:+22733525 | None:intergenic |
| ACAATTTGAGAATATTGGAG+GGG | 0.576270 | 8_4:+22733512 | None:intergenic |
| AAGATTCTCGATCTTTCTGA+AGG | 0.577993 | 8_4:+22733317 | None:intergenic |
| ATTGATCATAATTTCTTAGG+CGG | 0.581811 | 8_4:-22732923 | Msa1319510:CDS |
| AGAATATTGGAGGGGATGCG+TGG | 0.584053 | 8_4:+22733520 | None:intergenic |
| AGAACCGTCGGAGGCGTCAA+CGG | 0.588605 | 8_4:+22733465 | None:intergenic |
| TTTCCAGAATCGTCTATCAG+TGG | 0.594735 | 8_4:+22733616 | None:intergenic |
| ATATCTTCCAAAACAAGGTG+AGG | 0.604027 | 8_4:+22733433 | None:intergenic |
| AATTCCGCGATGTATATTAG+CGG | 0.604888 | 8_4:-22732723 | Msa1319510:three_prime_UTR |
| GATGGATAGATGAATAGACT+TGG | 0.609788 | 8_4:-22732678 | Msa1319510:three_prime_UTR |
| TTTCAGTGCCGTGAAAAGAA+GGG | 0.610037 | 8_4:+22733488 | None:intergenic |
| TGATGTAGGGAACAAATGAC+AGG | 0.615353 | 8_4:-22732760 | Msa1319510:three_prime_UTR |
| GAAACCGTTGACGCCTCCGA+CGG | 0.617951 | 8_4:-22733469 | Msa1319510:CDS |
| CCTCTTCAAGACGACGAACG+AGG | 0.625721 | 8_4:-22733583 | Msa1319510:CDS |
| AATCTTGATGTCGACGACAG+CGG | 0.639445 | 8_4:+22733390 | None:intergenic |
| ATGCGATATCTTCCAAAACA+AGG | 0.648535 | 8_4:+22733428 | None:intergenic |
| TATCTTCCAAAACAAGGTGA+GGG | 0.651339 | 8_4:+22733434 | None:intergenic |
| AGGGTGTAGACCAGAACCGT+CGG | 0.661282 | 8_4:+22733453 | None:intergenic |
| AATCGTCTATCAGTGGACCT+AGG | 0.661906 | 8_4:+22733623 | None:intergenic |
| GGGACCCACAGACCTCAACC+CGG | 0.672977 | 8_4:+22733267 | None:intergenic |
| GTGTAGACCAGAACCGTCGG+AGG | 0.689628 | 8_4:+22733456 | None:intergenic |
| GCGTGGATCGGAATAGAGGG+AGG | 0.703005 | 8_4:+22733537 | None:intergenic |
| TCTTGATGTCGACGACAGCG+GGG | 0.725668 | 8_4:+22733392 | None:intergenic |
| TCTTCCGCTAATATACATCG+CGG | 0.744266 | 8_4:+22732719 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAAATTTTTATATTCTTTA+GGG | - | chr8_4:22733831-22733850 | Msa1319510:intron | 10.0% |
| !! | TATCATATTTACATAGTTTA+GGG | + | chr8_4:22733751-22733770 | None:intergenic | 15.0% |
| !! | TTATCATATTTACATAGTTT+AGG | + | chr8_4:22733752-22733771 | None:intergenic | 15.0% |
| !!! | GACAAATTTTTATATTCTTT+AGG | - | chr8_4:22733830-22733849 | Msa1319510:intron | 15.0% |
| !! | TTATTGTATTTATATGGTTT+AGG | - | chr8_4:22733859-22733878 | Msa1319510:intron | 15.0% |
| !! | AATCTTCTACAATAAAATTA+GGG | - | chr8_4:22734764-22734783 | Msa1319510:intron | 15.0% |
| !! | GATCTAATCTAAAGAATAAA+AGG | + | chr8_4:22732631-22732650 | None:intergenic | 20.0% |
| !!! | TAATTTTCTCAAACTATTAC+CGG | - | chr8_4:22732847-22732866 | Msa1319510:CDS | 20.0% |
| !! | TAATGAATAAACAAATTCGA+AGG | + | chr8_4:22733032-22733051 | None:intergenic | 20.0% |
| !!! | TTCGAATTTGTTTATTCATT+AGG | - | chr8_4:22733031-22733050 | Msa1319510:CDS | 20.0% |
| !! | AGAATATAGTCGAAAAATAA+AGG | - | chr8_4:22733184-22733203 | Msa1319510:CDS | 20.0% |
| !!! | GAAAAATAAAGGTTTTATCT+TGG | - | chr8_4:22733195-22733214 | Msa1319510:CDS | 20.0% |
| !! | TAAATTGACAGACTTTATAT+AGG | + | chr8_4:22733780-22733799 | None:intergenic | 20.0% |
| !!! | TAGTCTTTTATTAAGATGTT+AGG | - | chr8_4:22733798-22733817 | Msa1319510:intron | 20.0% |
| !!! | AGTCTTTTATTAAGATGTTA+GGG | - | chr8_4:22733799-22733818 | Msa1319510:intron | 20.0% |
| !! | GACTACTTATTGTATTTATA+TGG | - | chr8_4:22733853-22733872 | Msa1319510:intron | 20.0% |
| !! | AAACAAGAGTTATATGAAAA+GGG | + | chr8_4:22734287-22734306 | None:intergenic | 20.0% |
| !! | AAAACAAGAGTTATATGAAA+AGG | + | chr8_4:22734288-22734307 | None:intergenic | 20.0% |
| !! | GAATCTTCTACAATAAAATT+AGG | - | chr8_4:22734763-22734782 | Msa1319510:intron | 20.0% |
| !!! | TTCTTTGATTAAGTTTGTTA+AGG | - | chr8_4:22735170-22735189 | Msa1319510:intron | 20.0% |
| !!! | ATGATGCTTTAATTTCAATT+TGG | - | chr8_4:22735531-22735550 | Msa1319510:intron | 20.0% |
| !! | AGTATTTGGAATGTCATAAT+TGG | - | chr8_4:22732508-22732527 | Msa1319510:three_prime_UTR | 25.0% |
| ! | TTCGAAAAACAATAGTATCT+TGG | + | chr8_4:22732653-22732672 | None:intergenic | 25.0% |
| ! | AAAAGCTATGACTTTATTGA+TGG | + | chr8_4:22732680-22732699 | None:intergenic | 25.0% |
| !!! | ATAAAGTCATAGCTTTTTCT+TGG | - | chr8_4:22732683-22732702 | Msa1319510:three_prime_UTR | 25.0% |
| ! | TATCACATAAAACGCAATTT+GGG | + | chr8_4:22732910-22732929 | None:intergenic | 25.0% |
| ! | TTATCACATAAAACGCAATT+TGG | + | chr8_4:22732911-22732930 | None:intergenic | 25.0% |
| !!! | TTACATGTCATGTTTTGATT+GGG | - | chr8_4:22732990-22733009 | Msa1319510:CDS | 25.0% |
| !!! | TTGTTGTTATTTGTGTTCAA+TGG | - | chr8_4:22734340-22734359 | Msa1319510:intron | 25.0% |
| ! | AACAATTTGAGAATATTGGA+GGG | + | chr8_4:22734556-22734575 | None:intergenic | 25.0% |
| ! | TTATGAGAAAGATGAAAAAG+AGG | - | chr8_4:22735047-22735066 | Msa1319510:intron | 25.0% |
| ! | GCTATTGATCATAATTTCTT+AGG | - | chr8_4:22735138-22735157 | Msa1319510:intron | 25.0% |
| ! | ATTGATCATAATTTCTTAGG+CGG | - | chr8_4:22735141-22735160 | Msa1319510:intron | 25.0% |
| !!! | TAAGTTTGTTAAGGATGTTT+TGG | - | chr8_4:22735179-22735198 | Msa1319510:intron | 25.0% |
| !! | TTTTTCTTAAAGCAGATAGA+TGG | - | chr8_4:22735368-22735387 | Msa1319510:intron | 25.0% |
| ! | AATAAGATGACTACTTTGTA+AGG | - | chr8_4:22735480-22735499 | Msa1319510:intron | 25.0% |
| !!! | GATTACTAGAAAGTATGTTT+TGG | - | chr8_4:22735553-22735572 | Msa1319510:intron | 25.0% |
| ! | GTAATTATATGTGTCGATGT+TGG | + | chr8_4:22732816-22732835 | None:intergenic | 30.0% |
| ! | TTGCGTTTTATGTGATAACA+CGG | - | chr8_4:22732913-22732932 | Msa1319510:CDS | 30.0% |
| !!! | GTTACATGTCATGTTTTGAT+TGG | - | chr8_4:22732989-22733008 | Msa1319510:CDS | 30.0% |
| ! | TGACAGAATTTTCAACAATG+AGG | - | chr8_4:22733149-22733168 | Msa1319510:CDS | 30.0% |
| !!! | ATATAAGAGGTTTTGAGGTA+GGG | - | chr8_4:22733325-22733344 | Msa1319510:CDS | 30.0% |
| GTCTTACTGTTGATGTAAAA+CGG | - | chr8_4:22733381-22733400 | Msa1319510:CDS | 30.0% | |
| ! | TAAAACGGTGTTTTTCTGTT+TGG | - | chr8_4:22733396-22733415 | Msa1319510:CDS | 30.0% |
| GATGAAAAAATGCAGGAAAA+CGG | + | chr8_4:22733456-22733475 | None:intergenic | 30.0% | |
| ACCAAAAGAGCTAGAATTAA+GGG | + | chr8_4:22733545-22733564 | None:intergenic | 30.0% | |
| AACCAAAAGAGCTAGAATTA+AGG | + | chr8_4:22733546-22733565 | None:intergenic | 30.0% | |
| TAGGGACTAAATTGAAGAAA+AGG | + | chr8_4:22733733-22733752 | None:intergenic | 30.0% | |
| TTGAGTGATGGTTTATTCAT+TGG | - | chr8_4:22733916-22733935 | Msa1319510:intron | 30.0% | |
| GATTGAACTGAACAATATGT+AGG | + | chr8_4:22734120-22734139 | None:intergenic | 30.0% | |
| ACAATTTGAGAATATTGGAG+GGG | + | chr8_4:22734555-22734574 | None:intergenic | 30.0% | |
| GAACAATTTGAGAATATTGG+AGG | + | chr8_4:22734557-22734576 | None:intergenic | 30.0% | |
| AGGGAACAATTTGAGAATAT+TGG | + | chr8_4:22734560-22734579 | None:intergenic | 30.0% | |
| ! | AAATTGTTCCCTTCTTTTCA+CGG | - | chr8_4:22734568-22734587 | Msa1319510:intron | 30.0% |
| TCCATAAGAAACTTTCTATC+AGG | + | chr8_4:22734841-22734860 | None:intergenic | 30.0% | |
| !!! | ATGATGTAATGTTGGTTTTG+AGG | - | chr8_4:22734872-22734891 | Msa1319510:intron | 30.0% |
| AATTGTTGGAGCTTAAGAAA+TGG | - | chr8_4:22734974-22734993 | Msa1319510:intron | 30.0% | |
| TGAAAAAGAGGATGAGAAAA+AGG | - | chr8_4:22735059-22735078 | Msa1319510:intron | 30.0% | |
| GAAAAAGAGGATGAGAAAAA+GGG | - | chr8_4:22735060-22735079 | Msa1319510:intron | 30.0% | |
| TGAGAAAGAATGATTATCAC+TGG | - | chr8_4:22735257-22735276 | Msa1319510:intron | 30.0% | |
| CCACAATGAAGAAAAAGATG+TGG | + | chr8_4:22732951-22732970 | None:intergenic | 35.0% | |
| ! | CCACATCTTTTTCTTCATTG+TGG | - | chr8_4:22732948-22732967 | Msa1319510:CDS | 35.0% |
| ! | TCTTTTTCTTCATTGTGGAG+TGG | - | chr8_4:22732953-22732972 | Msa1319510:CDS | 35.0% |
| AAATTAACCTATGACCGTTC+CGG | + | chr8_4:22733091-22733110 | None:intergenic | 35.0% | |
| TAATTTGGCATGCAACAACA+TGG | - | chr8_4:22733105-22733124 | Msa1319510:CDS | 35.0% | |
| AATTTGGCATGCAACAACAT+GGG | - | chr8_4:22733106-22733125 | Msa1319510:CDS | 35.0% | |
| TACCTCAAAAAACAGTCTCT+CGG | + | chr8_4:22733281-22733300 | None:intergenic | 35.0% | |
| !!! | GAGACTGTTTTTTGAGGTAA+CGG | - | chr8_4:22733282-22733301 | Msa1319510:CDS | 35.0% |
| !!! | AGACTGTTTTTTGAGGTAAC+GGG | - | chr8_4:22733283-22733302 | Msa1319510:CDS | 35.0% |
| !!! | GATATAAGAGGTTTTGAGGT+AGG | - | chr8_4:22733324-22733343 | Msa1319510:CDS | 35.0% |
| !!! | TCCCTTAATTCTAGCTCTTT+TGG | - | chr8_4:22733541-22733560 | Msa1319510:CDS | 35.0% |
| !!! | AATTCTAGCTCTTTTGGTTG+TGG | - | chr8_4:22733547-22733566 | Msa1319510:CDS | 35.0% |
| ACAAAGGAACAGTATATGTG+CGG | + | chr8_4:22733611-22733630 | None:intergenic | 35.0% | |
| ACGGGCATAGAAAAATACAA+AGG | + | chr8_4:22733627-22733646 | None:intergenic | 35.0% | |
| ACAAAAACTTGCGGACAAAA+CGG | + | chr8_4:22733646-22733665 | None:intergenic | 35.0% | |
| GTAAGACACACAAAAACTTG+CGG | + | chr8_4:22733655-22733674 | None:intergenic | 35.0% | |
| !! | GAAGAGAGCGTTATTGTTTA+TGG | - | chr8_4:22733891-22733910 | Msa1319510:intron | 35.0% |
| TTGTTTATGGACTTGAGTGA+TGG | - | chr8_4:22733904-22733923 | Msa1319510:intron | 35.0% | |
| !!! | GTTCGGTGTTATTGGTTTTA+TGG | - | chr8_4:22734152-22734171 | Msa1319510:intron | 35.0% |
| GCACAGACTATCAAATTAGA+GGG | + | chr8_4:22734206-22734225 | None:intergenic | 35.0% | |
| AGCACAGACTATCAAATTAG+AGG | + | chr8_4:22734207-22734226 | None:intergenic | 35.0% | |
| AAACCAGAAAATGATGAGCA+GGG | + | chr8_4:22734257-22734276 | None:intergenic | 35.0% | |
| AAAACCAGAAAATGATGAGC+AGG | + | chr8_4:22734258-22734277 | None:intergenic | 35.0% | |
| ATACAGCTTCAGTAGCAAAA+TGG | - | chr8_4:22734363-22734382 | Msa1319510:intron | 35.0% | |
| TATCTTCCAAAACAAGGTGA+GGG | + | chr8_4:22734633-22734652 | None:intergenic | 35.0% | |
| ATATCTTCCAAAACAAGGTG+AGG | + | chr8_4:22734634-22734653 | None:intergenic | 35.0% | |
| ATGCGATATCTTCCAAAACA+AGG | + | chr8_4:22734639-22734658 | None:intergenic | 35.0% | |
| AATCTTCCGAAGACTACATT+CGG | - | chr8_4:22734719-22734738 | Msa1319510:intron | 35.0% | |
| AAGATTCTCGATCTTTCTGA+AGG | + | chr8_4:22734750-22734769 | None:intergenic | 35.0% | |
| ! | AAATTAGGGTTTAGAGTCTC+CGG | - | chr8_4:22734778-22734797 | Msa1319510:intron | 35.0% |
| TGGGTCCCAATAACAAATTA+TGG | - | chr8_4:22734812-22734831 | Msa1319510:intron | 35.0% | |
| !! | GGCTGCCATAATTTGTTATT+GGG | + | chr8_4:22734820-22734839 | None:intergenic | 35.0% |
| !! | AGGCTGCCATAATTTGTTAT+TGG | + | chr8_4:22734821-22734840 | None:intergenic | 35.0% |
| GCCTGATAGAAAGTTTCTTA+TGG | - | chr8_4:22734837-22734856 | Msa1319510:intron | 35.0% | |
| ! | ATCTGCTGATGATGTAATGT+TGG | - | chr8_4:22734864-22734883 | Msa1319510:intron | 35.0% |
| AGGAAATTTCTTTCGTCGAA+TGG | - | chr8_4:22734892-22734911 | Msa1319510:intron | 35.0% | |
| !!! | ATGAGCCTGATGTTGTTTTT+GGG | - | chr8_4:22734923-22734942 | Msa1319510:intron | 35.0% |
| !!! | TGATGTTGTTTTTGGGTCTA+GGG | - | chr8_4:22734930-22734949 | Msa1319510:intron | 35.0% |
| TTATTCGTGTTCTGTTCTTG+TGG | - | chr8_4:22735023-22735042 | Msa1319510:intron | 35.0% | |
| !!! | TTTGTTAAGGATGTTTTGGC+TGG | - | chr8_4:22735183-22735202 | Msa1319510:intron | 35.0% |
| ! | TTGAAAGATTGCACTGATGT+AGG | - | chr8_4:22735290-22735309 | Msa1319510:intron | 35.0% |
| ! | TGAAAGATTGCACTGATGTA+GGG | - | chr8_4:22735291-22735310 | Msa1319510:intron | 35.0% |
| AATTCCGCGATGTATATTAG+CGG | - | chr8_4:22735341-22735360 | Msa1319510:intron | 35.0% | |
| GATGGATAGATGAATAGACT+TGG | - | chr8_4:22735386-22735405 | Msa1319510:intron | 35.0% | |
| ACGCAAGATTCATTCTTGTG+GGG | + | chr8_4:22732729-22732748 | None:intergenic | 40.0% | |
| CACGCAAGATTCATTCTTGT+GGG | + | chr8_4:22732730-22732749 | None:intergenic | 40.0% | |
| ACACGCAAGATTCATTCTTG+TGG | + | chr8_4:22732731-22732750 | None:intergenic | 40.0% | |
| ! | CGTTTTATGTGATAACACGG+CGG | - | chr8_4:22732916-22732935 | Msa1319510:CDS | 40.0% |
| !! | TCATTAGGAGTGTTGTAGTC+AGG | - | chr8_4:22733046-22733065 | Msa1319510:CDS | 40.0% |
| AAGAATAAGAGGATCCGGAA+CGG | - | chr8_4:22733074-22733093 | Msa1319510:CDS | 40.0% | |
| GGAACGGTCATAGGTTAATT+TGG | - | chr8_4:22733090-22733109 | Msa1319510:CDS | 40.0% | |
| TGCAACAACATGGGTGTTTA+TGG | - | chr8_4:22733115-22733134 | Msa1319510:CDS | 40.0% | |
| ATGGGTGTTTATGGAAAGCT+AGG | - | chr8_4:22733124-22733143 | Msa1319510:CDS | 40.0% | |
| CACTCATAGAACAAACAAGC+TGG | + | chr8_4:22733248-22733267 | None:intergenic | 40.0% | |
| ! | CAGCTTGTTTGTTCTATGAG+TGG | - | chr8_4:22733246-22733265 | Msa1319510:CDS | 40.0% |
| !!! | ATCCGAGAGACTGTTTTTTG+AGG | - | chr8_4:22733276-22733295 | Msa1319510:CDS | 40.0% |
| !!! | GTTTTTTGAGGTAACGGGTA+TGG | - | chr8_4:22733288-22733307 | Msa1319510:CDS | 40.0% |
| ! | TGGCGATATAAGAGGTTTTG+AGG | - | chr8_4:22733320-22733339 | Msa1319510:CDS | 40.0% |
| GAGGTAGGGATATTCTATGT+TGG | - | chr8_4:22733339-22733358 | Msa1319510:CDS | 40.0% | |
| AGCTCAGCAAACAAATGATG+AGG | + | chr8_4:22733432-22733451 | None:intergenic | 40.0% | |
| ! | TTTTCATCTGTCCCCTGTTA+TGG | - | chr8_4:22733468-22733487 | Msa1319510:CDS | 40.0% |
| TTTCATCTGTCCCCTGTTAT+GGG | - | chr8_4:22733469-22733488 | Msa1319510:CDS | 40.0% | |
| AGTAGACAAACTAACACCCA+AGG | + | chr8_4:22733495-22733514 | None:intergenic | 40.0% | |
| !!! | ATTTTGGGGTTAAGGTGGTT+TGG | - | chr8_4:22733576-22733595 | Msa1319510:CDS | 40.0% |
| !!! | TTTTGGGGTTAAGGTGGTTT+GGG | - | chr8_4:22733577-22733596 | Msa1319510:CDS | 40.0% |
| CAAAAACTTGCGGACAAAAC+GGG | + | chr8_4:22733645-22733664 | None:intergenic | 40.0% | |
| TGTAAGCATGCTGTAGACTA+AGG | - | chr8_4:22733951-22733970 | Msa1319510:intron | 40.0% | |
| CAATCTATGTCCCTCTAGTT+CGG | - | chr8_4:22734135-22734154 | Msa1319510:intron | 40.0% | |
| ACCAATAACACCGAACTAGA+GGG | + | chr8_4:22734148-22734167 | None:intergenic | 40.0% | |
| AACCAATAACACCGAACTAG+AGG | + | chr8_4:22734149-22734168 | None:intergenic | 40.0% | |
| ! | CTAGGATTCCAGTTTTTGCT+TGG | + | chr8_4:22734426-22734445 | None:intergenic | 40.0% |
| CAAGCAAAAACTGGAATCCT+AGG | - | chr8_4:22734424-22734443 | Msa1319510:intron | 40.0% | |
| TTTCCAGAATCGTCTATCAG+TGG | + | chr8_4:22734451-22734470 | None:intergenic | 40.0% | |
| TTTCAGTGCCGTGAAAAGAA+GGG | + | chr8_4:22734579-22734598 | None:intergenic | 40.0% | |
| ! | TCAAGATTGGTTCTCGAACA+TGG | - | chr8_4:22734689-22734708 | Msa1319510:intron | 40.0% |
| TGTAGTCTTCGGAAGATTGA+GGG | + | chr8_4:22734717-22734736 | None:intergenic | 40.0% | |
| ATGTAGTCTTCGGAAGATTG+AGG | + | chr8_4:22734718-22734737 | None:intergenic | 40.0% | |
| GCATTTCCGAATGTAGTCTT+CGG | + | chr8_4:22734728-22734747 | None:intergenic | 40.0% | |
| ! | AATTAGGGTTTAGAGTCTCC+GGG | - | chr8_4:22734779-22734798 | Msa1319510:intron | 40.0% |
| !!! | GATGAGCCTGATGTTGTTTT+TGG | - | chr8_4:22734922-22734941 | Msa1319510:intron | 40.0% |
| CTAGACCCAAAAACAACATC+AGG | + | chr8_4:22734931-22734950 | None:intergenic | 40.0% | |
| !!! | CTGATGTTGTTTTTGGGTCT+AGG | - | chr8_4:22734929-22734948 | Msa1319510:intron | 40.0% |
| ! | TAGGGTTTTTGTTCCTGTTC+TGG | - | chr8_4:22734948-22734967 | Msa1319510:intron | 40.0% |
| GGAGCTTAAGAAATGGTTTG+AGG | - | chr8_4:22734981-22735000 | Msa1319510:intron | 40.0% | |
| !!! | AAGGATGTTTTGGCTGGTTT+AGG | - | chr8_4:22735189-22735208 | Msa1319510:intron | 40.0% |
| TGATGTAGGGAACAAATGAC+AGG | - | chr8_4:22735304-22735323 | Msa1319510:intron | 40.0% | |
| TCTTCCGCTAATATACATCG+CGG | + | chr8_4:22735348-22735367 | None:intergenic | 40.0% | |
| TTGTGGGGATTCTACTGAGA+AGG | + | chr8_4:22732714-22732733 | None:intergenic | 45.0% | |
| ACACGACACATGTATGACAG+CGG | + | chr8_4:22732793-22732812 | None:intergenic | 45.0% | |
| CAATTTGGGTAGCTCTCATG+GGG | + | chr8_4:22732896-22732915 | None:intergenic | 45.0% | |
| GCAATTTGGGTAGCTCTCAT+GGG | + | chr8_4:22732897-22732916 | None:intergenic | 45.0% | |
| TTTATGTGATAACACGGCGG+TGG | - | chr8_4:22732919-22732938 | Msa1319510:CDS | 45.0% | |
| GTGGAGTGGCAATGAATGTT+TGG | - | chr8_4:22732967-22732986 | Msa1319510:CDS | 45.0% | |
| !! | TTAGGAGTGTTGTAGTCAGG+AGG | - | chr8_4:22733049-22733068 | Msa1319510:CDS | 45.0% |
| AGGCGAAGAATAAGAGGATC+CGG | - | chr8_4:22733069-22733088 | Msa1319510:CDS | 45.0% | |
| GGGGACAGATGAAAAAATGC+AGG | + | chr8_4:22733463-22733482 | None:intergenic | 45.0% | |
| !!! | TTGGTTGTGGTGCTGCATTT+TGG | - | chr8_4:22733560-22733579 | Msa1319510:CDS | 45.0% |
| !!! | TGGTTGTGGTGCTGCATTTT+GGG | - | chr8_4:22733561-22733580 | Msa1319510:CDS | 45.0% |
| !! | GCTGTAGACTAAGGTACTGA+TGG | - | chr8_4:22733960-22733979 | Msa1319510:intron | 45.0% |
| !! | GTAGACTAAGGTACTGATGG+TGG | - | chr8_4:22733963-22733982 | Msa1319510:intron | 45.0% |
| !! | TCCCTCTAGTTCGGTGTTAT+TGG | - | chr8_4:22734144-22734163 | Msa1319510:intron | 45.0% |
| AGAAAATGATGAGCAGGGAG+AGG | + | chr8_4:22734252-22734271 | None:intergenic | 45.0% | |
| ! | TCTCCCTGCTCATCATTTTC+TGG | - | chr8_4:22734251-22734270 | Msa1319510:intron | 45.0% |
| AATCGTCTATCAGTGGACCT+AGG | + | chr8_4:22734444-22734463 | None:intergenic | 45.0% | |
| GGTGTAGAAAGCAAGTTCGT+TGG | + | chr8_4:22734509-22734528 | None:intergenic | 45.0% | |
| GTTTCAGTGCCGTGAAAAGA+AGG | + | chr8_4:22734580-22734599 | None:intergenic | 45.0% | |
| !! | TCTACACCCTCACCTTGTTT+TGG | - | chr8_4:22734624-22734643 | Msa1319510:intron | 45.0% |
| AATCTTGATGTCGACGACAG+CGG | + | chr8_4:22734677-22734696 | None:intergenic | 45.0% | |
| ! | GGTTTTTGTTCCTGTTCTGG+AGG | - | chr8_4:22734951-22734970 | Msa1319510:intron | 45.0% |
| !! | TCCTGTTCTGGAGGAATTGT+TGG | - | chr8_4:22734960-22734979 | Msa1319510:intron | 45.0% |
| TCCAACAATTCCTCCAGAAC+AGG | + | chr8_4:22734964-22734983 | None:intergenic | 45.0% | |
| !! | TTGGCTGGTTTAGGTGATGT+TGG | - | chr8_4:22735198-22735217 | Msa1319510:intron | 45.0% |
| !!! | TTTTTTTTTTTTTTTTGAAT+CGG | + | chr8_4:22733703-22733722 | None:intergenic | 5.0% |
| TGCGTGTCGAAACGTTAGCA+CGG | - | chr8_4:22732744-22732763 | Msa1319510:three_prime_UTR | 50.0% | |
| ACGTTAGCACGGACATTCCT+CGG | - | chr8_4:22732755-22732774 | Msa1319510:three_prime_UTR | 50.0% | |
| CACGACACATGTATGACAGC+GGG | + | chr8_4:22732792-22732811 | None:intergenic | 50.0% | |
| CTCTCATGGGGTATGAAGCA+CGG | + | chr8_4:22732884-22732903 | None:intergenic | 50.0% | |
| CGCAATTTGGGTAGCTCTCA+TGG | + | chr8_4:22732898-22732917 | None:intergenic | 50.0% | |
| GTCAGGAGGCGAAGAATAAG+AGG | - | chr8_4:22733063-22733082 | Msa1319510:CDS | 50.0% | |
| TGGATTTGCACTGCTGTTCG+AGG | - | chr8_4:22733359-22733378 | Msa1319510:CDS | 50.0% | |
| AACACCCAAGGCCCATAACA+GGG | + | chr8_4:22733483-22733502 | None:intergenic | 50.0% | |
| TAACACCCAAGGCCCATAAC+AGG | + | chr8_4:22733484-22733503 | None:intergenic | 50.0% | |
| !! | GTCTACTGTGTTGCTTGTGC+AGG | - | chr8_4:22733508-22733527 | Msa1319510:CDS | 50.0% |
| !!! | GGTTGTGGTGCTGCATTTTG+GGG | - | chr8_4:22733562-22733581 | Msa1319510:CDS | 50.0% |
| !!! | GGTGCTGCATTTTGGGGTTA+AGG | - | chr8_4:22733568-22733587 | Msa1319510:CDS | 50.0% |
| !!! | GCTGCATTTTGGGGTTAAGG+TGG | - | chr8_4:22733571-22733590 | Msa1319510:CDS | 50.0% |
| !! | GACTAAGGTACTGATGGTGG+TGG | - | chr8_4:22733966-22733985 | Msa1319510:intron | 50.0% |
| !! | AGGTACTGATGGTGGTGGTA+AGG | - | chr8_4:22733971-22733990 | Msa1319510:intron | 50.0% |
| ! | TTGCTTGGTGACCAGCAACT+TGG | + | chr8_4:22734411-22734430 | None:intergenic | 50.0% |
| GCTGGTCACCAAGCAAAAAC+TGG | - | chr8_4:22734415-22734434 | Msa1319510:intron | 50.0% | |
| GGTCCACTGATAGACGATTC+TGG | - | chr8_4:22734445-22734464 | Msa1319510:intron | 50.0% | |
| GATGCGTGGATCGGAATAGA+GGG | + | chr8_4:22734533-22734552 | None:intergenic | 50.0% | |
| AGAATATTGGAGGGGATGCG+TGG | + | chr8_4:22734547-22734566 | None:intergenic | 50.0% | |
| ATCTTGATGTCGACGACAGC+GGG | + | chr8_4:22734676-22734695 | None:intergenic | 50.0% | |
| GCTGTCGTCGACATCAAGAT+TGG | - | chr8_4:22734676-22734695 | Msa1319510:intron | 50.0% | |
| GCTCACGTCGTTGATGCTAA+AGG | - | chr8_4:22735114-22735133 | Msa1319510:intron | 50.0% | |
| GCACGGACATTCCTCGGATT+AGG | - | chr8_4:22732761-22732780 | Msa1319510:three_prime_UTR | 55.0% | |
| AGAGGATCCGGAACGGTCAT+AGG | - | chr8_4:22733081-22733100 | Msa1319510:CDS | 55.0% | |
| ! | TGCGCTGGTGGCGATATAAG+AGG | - | chr8_4:22733312-22733331 | Msa1319510:CDS | 55.0% |
| TGTCCCCTGTTATGGGCCTT+GGG | - | chr8_4:22733476-22733495 | Msa1319510:CDS | 55.0% | |
| ACACCCAAGGCCCATAACAG+GGG | + | chr8_4:22733482-22733501 | None:intergenic | 55.0% | |
| ! | GGGGTTAAGGTGGTTTGGGA+AGG | - | chr8_4:22733581-22733600 | Msa1319510:CDS | 55.0% |
| TGATGAGCAGGGAGAGGAGA+GGG | + | chr8_4:22734246-22734265 | None:intergenic | 55.0% | |
| ATGATGAGCAGGGAGAGGAG+AGG | + | chr8_4:22734247-22734266 | None:intergenic | 55.0% | |
| ATCCCAGACCACCAAGTTGC+TGG | - | chr8_4:22734397-22734416 | Msa1319510:intron | 55.0% | |
| ! | GACCAGCAACTTGGTGGTCT+GGG | + | chr8_4:22734402-22734421 | None:intergenic | 55.0% |
| ! | TGACCAGCAACTTGGTGGTC+TGG | + | chr8_4:22734403-22734422 | None:intergenic | 55.0% |
| ! | CTTGGTGACCAGCAACTTGG+TGG | + | chr8_4:22734408-22734427 | None:intergenic | 55.0% |
| CCTCGTTCGTCGTCTTGAAG+AGG | + | chr8_4:22734484-22734503 | None:intergenic | 55.0% | |
| CCTCTTCAAGACGACGAACG+AGG | - | chr8_4:22734481-22734500 | Msa1319510:intron | 55.0% | |
| GGATGCGTGGATCGGAATAG+AGG | + | chr8_4:22734534-22734553 | None:intergenic | 55.0% | |
| ATTGGAGGGGATGCGTGGAT+CGG | + | chr8_4:22734542-22734561 | None:intergenic | 55.0% | |
| AGGGTGTAGACCAGAACCGT+CGG | + | chr8_4:22734614-22734633 | None:intergenic | 55.0% | |
| !! | GACAGCGGGGTTGGTGTAAT+TGG | + | chr8_4:22734662-22734681 | None:intergenic | 55.0% |
| TCTTGATGTCGACGACAGCG+GGG | + | chr8_4:22734675-22734694 | None:intergenic | 55.0% | |
| ! | GGTTTAGAGTCTCCGGGTTG+AGG | - | chr8_4:22734785-22734804 | Msa1319510:intron | 55.0% |
| AAGCACGGACACGTCGACAC+CGG | + | chr8_4:22732869-22732888 | None:intergenic | 60.0% | |
| !! | GGTAACGGGTATGGTTGCGC+TGG | - | chr8_4:22733297-22733316 | Msa1319510:CDS | 60.0% |
| AACGGGTATGGTTGCGCTGG+TGG | - | chr8_4:22733300-22733319 | Msa1319510:CDS | 60.0% | |
| CTGTCCCCTGTTATGGGCCT+TGG | - | chr8_4:22733475-22733494 | Msa1319510:CDS | 60.0% | |
| GATGAGCAGGGAGAGGAGAG+GGG | + | chr8_4:22734245-22734264 | None:intergenic | 60.0% | |
| GCGTGGATCGGAATAGAGGG+AGG | + | chr8_4:22734530-22734549 | None:intergenic | 60.0% | |
| GAAACCGTTGACGCCTCCGA+CGG | - | chr8_4:22734595-22734614 | Msa1319510:intron | 60.0% | |
| !! | AGAACCGTCGGAGGCGTCAA+CGG | + | chr8_4:22734602-22734621 | None:intergenic | 60.0% |
| GTGTAGACCAGAACCGTCGG+AGG | + | chr8_4:22734611-22734630 | None:intergenic | 60.0% | |
| ! | AGTCTCCGGGTTGAGGTCTG+TGG | - | chr8_4:22734792-22734811 | Msa1319510:intron | 60.0% |
| ! | GTCTCCGGGTTGAGGTCTGT+GGG | - | chr8_4:22734793-22734812 | Msa1319510:intron | 60.0% |
| AGCGGGACACGCCTAATCCG+AGG | + | chr8_4:22732775-22732794 | None:intergenic | 65.0% | |
| GTTGACGCCTCCGACGGTTC+TGG | - | chr8_4:22734601-22734620 | Msa1319510:intron | 65.0% | |
| GATGTCGACGACAGCGGGGT+TGG | + | chr8_4:22734671-22734690 | None:intergenic | 65.0% | |
| GGGACCCACAGACCTCAACC+CGG | + | chr8_4:22734800-22734819 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 22732501 | 22735585 | 22732501 | ID=Msa1319510;Name=Msa1319510 |
| chr8_4 | mRNA | 22732501 | 22735585 | 22732501 | ID=Msa1319510-mRNA-1;Parent=Msa1319510;Name=Msa1319510-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0|0.5|0.5|1|1|2|340|294 |
| chr8_4 | exon | 22732501 | 22733717 | 22732501 | ID=Msa1319510-mRNA-1:exon:8080;Parent=Msa1319510-mRNA-1 |
| chr8_4 | exon | 22735578 | 22735585 | 22735578 | ID=Msa1319510-mRNA-1:exon:8079;Parent=Msa1319510-mRNA-1 |
| chr8_4 | CDS | 22735578 | 22735585 | 22735578 | ID=Msa1319510-mRNA-1:cds;Parent=Msa1319510-mRNA-1 |
| chr8_4 | CDS | 22732841 | 22733717 | 22732841 | ID=Msa1319510-mRNA-1:cds;Parent=Msa1319510-mRNA-1 |
| chr8_4 | three_prime_UTR | 22732501 | 22732840 | 22732501 | ID=Msa1319510-mRNA-1:three_prime_utr;Parent=Msa1319510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
