AlfalfaGEDB | Msa1239320

M. sativa cultivar zhongmu-4 / Msa1239320

KEGG: K09260
GO: GO:0000003 GO:0000060 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0007275 GO:0008104 GO:0008134 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009911 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015031 GO:0015833 GO:0017038 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034504 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045184 GO:0045893 GO:0045935 GO:0046907 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0090567 GO:0098727 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1239320	XP_013444984.1	94.196	224	13	0	1	224	1	224	1.25e-149	425

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1239320	sp\|O64645\|SOC1_ARATH	65.581	215	66	3	1	213	1	209	2.14e-93	275

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa1239320	TF	MADS-MIKC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0306810	Msa1239320	0.871151	8.499348e-67	-8.615850e-47
Msa1185290	Msa1239320	0.853643	2.087068e-61	-8.615850e-47
Msa1185310	Msa1239320	0.841566	4.396758e-58	-8.615850e-47
Msa1185320	Msa1239320	0.909357	6.229224e-82	-8.615850e-47
Msa1239310	Msa1239320	0.804137	2.495532e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1239320	MtrunA17_Chr8g0351031	94.196	224	13	0	1	224	1	224	1.15e-153	425
Msa1239320	MtrunA17_Chr8g0351041	91.304	161	14	0	1	161	1	161	6.14e-105	300
Msa1239320	MtrunA17_Chr7g0246431	66.981	212	66	3	1	212	1	208	6.01e-95	276
Msa1239320	MtrunA17_Chr4g0057151	58.065	217	76	4	1	216	1	203	1.66e-77	231
Msa1239320	MtrunA17_Chr3g0097101	43.868	212	111	3	1	210	16	221	1.29e-51	167
Msa1239320	MtrunA17_Chr2g0284911	49.704	169	84	1	3	171	18	185	1.17e-50	165
Msa1239320	MtrunA17_Chr8g0351051	42.081	221	114	3	1	210	1	218	8.99e-49	160
Msa1239320	MtrunA17_Chr3g0077501	47.368	171	89	1	1	171	1	170	4.23e-48	157
Msa1239320	MtrunA17_Chr8g0380021	47.929	169	87	1	3	171	19	186	1.32e-47	157
Msa1239320	MtrunA17_Chr8g0366231	49.704	169	83	2	1	168	1	168	5.29e-46	152

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1239320	AT2G45660.1	65.581	215	66	3	1	213	1	209	2.18e-94	275
Msa1239320	AT2G45660.2	74.534	161	36	2	1	159	1	158	7.97e-82	241
Msa1239320	AT5G62165.3	55.399	213	88	3	1	213	1	206	1.55e-76	229
Msa1239320	AT5G62165.1	55.399	213	88	3	1	213	1	206	1.55e-76	229
Msa1239320	AT5G62165.2	55.399	213	88	3	1	213	1	206	1.55e-76	229
Msa1239320	AT4G22950.3	56.502	223	89	3	1	222	1	216	1.60e-76	230
Msa1239320	AT4G22950.1	56.502	223	89	3	1	222	1	216	1.60e-76	230
Msa1239320	AT4G22950.2	64.912	171	58	1	1	171	1	169	1.41e-73	221
Msa1239320	AT5G62165.17	63.057	157	57	1	1	157	1	156	5.62e-70	211
Msa1239320	AT5G62165.12	63.057	157	57	1	1	157	1	156	5.62e-70	211

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Find 71 sgRNAs with CRISPR-Local

Find 640 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCATAATTGCTTGTTT+TGG	0.291781	8_2:-20910798	None:intergenic
AAACTCTTAGGAGAAGGTCT+AGG	0.447821	8_2:+20920045	Msa1239320:CDS
AAAGAAAATATATGTATAAA+GGG	0.409393	8_2:-20911102	None:intergenic
AAAGTAGTGATCCATAATTG+AGG	0.623208	8_2:-20910989	None:intergenic
AAATGCCATGCTCACAGAGA+AGG	0.595558	8_2:+20920815	Msa1239320:CDS
AACAAGACGCATTTCTCCAA+AGG	0.605530	8_2:+20921265	Msa1239320:CDS
AACGATACCGCAATCATACC+AGG	0.576369	8_2:+20917607	Msa1239320:CDS
AACTCTTAGGAGAAGGTCTA+GGG	0.544433	8_2:+20920046	Msa1239320:CDS
AAGCAAAATTCGAGCAAGAA+AGG	0.486364	8_2:+20920122	Msa1239320:CDS
AAGTAGTCCAAGTTCAGATG+TGG	0.602735	8_2:+20921208	Msa1239320:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTGATTAATAAGGAAAGGT+AGG	+	chr8_2:20910894-20910913	Msa1239320:five_prime_UTR	30.0%
AAAGTAGTGATCCATAATTG+AGG	-	chr8_2:20910992-20911011	None:intergenic	30.0%
TAGAACAGGAAAATAAGGAA+GGG	-	chr8_2:20911075-20911094	None:intergenic	30.0%
GCAAGAAAAGCAATTTCAAA+AGG	-	chr8_2:20911157-20911176	None:intergenic	30.0%
GATGAAAGAAACAAGGAAAT+GGG	-	chr8_2:20911316-20911335	None:intergenic	30.0%
TATGAAGGATGAAAGAAACA+AGG	-	chr8_2:20911323-20911342	None:intergenic	30.0%
ACATTCTCAAAGAGAAGAAA+TGG	+	chr8_2:20911714-20911733	Msa1239320:CDS	30.0%
ACACAACACTGATAATTCAA+AGG	-	chr8_2:20911754-20911773	None:intergenic	30.0%
CTAGAGTAAACAAACTCTAA+GGG	-	chr8_2:20912202-20912221	None:intergenic	30.0%
AGAAGTGAGAGAATGAAAAT+AGG	+	chr8_2:20912253-20912272	Msa1239320:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	20910792	20921583	20910792	ID=Msa1239320;Name=Msa1239320
chr8_2	mRNA	20910792	20921583	20910792	ID=Msa1239320-mRNA-1;Parent=Msa1239320;Name=Msa1239320-mRNA-1;_AED=0.17;_eAED=0.17;_QI=409\|1\|1\|1\|0.85\|0.75\|8\|291\|224
chr8_2	exon	20910792	20911183	20910792	ID=Msa1239320-mRNA-1:exon:7538;Parent=Msa1239320-mRNA-1
chr8_2	exon	20911640	20911838	20911640	ID=Msa1239320-mRNA-1:exon:7539;Parent=Msa1239320-mRNA-1
chr8_2	exon	20917590	20917674	20917590	ID=Msa1239320-mRNA-1:exon:7540;Parent=Msa1239320-mRNA-1
chr8_2	exon	20919870	20919931	20919870	ID=Msa1239320-mRNA-1:exon:7541;Parent=Msa1239320-mRNA-1
chr8_2	exon	20920044	20920143	20920044	ID=Msa1239320-mRNA-1:exon:7542;Parent=Msa1239320-mRNA-1
chr8_2	exon	20920222	20920263	20920222	ID=Msa1239320-mRNA-1:exon:7543;Parent=Msa1239320-mRNA-1
chr8_2	exon	20920795	20920836	20920795	ID=Msa1239320-mRNA-1:exon:7544;Parent=Msa1239320-mRNA-1
chr8_2	exon	20921131	20921583	20921131	ID=Msa1239320-mRNA-1:exon:7545;Parent=Msa1239320-mRNA-1
chr8_2	five_prime_UTR	20910792	20911183	20910792	ID=Msa1239320-mRNA-1:five_prime_utr;Parent=Msa1239320-mRNA-1
chr8_2	five_prime_UTR	20911640	20911656	20911640	ID=Msa1239320-mRNA-1:five_prime_utr;Parent=Msa1239320-mRNA-1
chr8_2	CDS	20911657	20911838	20911657	ID=Msa1239320-mRNA-1:cds;Parent=Msa1239320-mRNA-1
chr8_2	CDS	20917590	20917674	20917590	ID=Msa1239320-mRNA-1:cds;Parent=Msa1239320-mRNA-1
chr8_2	CDS	20919870	20919931	20919870	ID=Msa1239320-mRNA-1:cds;Parent=Msa1239320-mRNA-1
chr8_2	CDS	20920044	20920143	20920044	ID=Msa1239320-mRNA-1:cds;Parent=Msa1239320-mRNA-1
chr8_2	CDS	20920222	20920263	20920222	ID=Msa1239320-mRNA-1:cds;Parent=Msa1239320-mRNA-1
chr8_2	CDS	20920795	20920836	20920795	ID=Msa1239320-mRNA-1:cds;Parent=Msa1239320-mRNA-1
chr8_2	CDS	20921131	20921292	20921131	ID=Msa1239320-mRNA-1:cds;Parent=Msa1239320-mRNA-1
chr8_2	three_prime_UTR	20921293	20921583	20921293	ID=Msa1239320-mRNA-1:three_prime_utr;Parent=Msa1239320-mRNA-1

Gene Sequence

>Msa1239320

ATGGTGAGAGGAAAGACACAAATGAAGCGTATAGAGAACGCAACAAGTAGGCAAGTAACATTCTCAAAGAGAAGAAATGGTTTGTTGAAGAAAGCCTTTGAATTATCAGTGTTGTGTGATGCTGAGGTTGCTCTTATTGTTTTCTCACCAAGAGGGAGGCTATATGAATTTGCTAGCTCTAGCATTCCAGAAACGATTGAACGATACCGCAATCATACCAGGATTAATAGCACTCCAACACCATCTGAATCAGTTGAAAATACTCAGCAACTGAAGGAAGAAGCAGAAAACATGATGAAAAAGATTGACCTTCTTGAGACTTCAAAACGGAAACTCTTAGGAGAAGGTCTAGGGTCTTGTTCCATTGATGACCTACAAAAGATTGAACAACAGTTAGAGAGAAGTATAAGCAAAATTCGAGCAAGAAAGACTCAGGTTTTCAGGGAACAAATTGAGCAGCTAAAGGAAAAGGAAAAAACCCTAGTTGCTGAAAATGCCATGCTCACAGAGAAGTATGGTAACTATTCATCACAGGAAGCAACAAATGATCGGAGAGAGAATATAGCTGAAGCTGAACCTTCTGCAGATCAAAGTAGTCCAAGTTCAGATGTGGAGACTGAATTGTTCATTGGTCTTCCAGAAACAAGAACAAGACGCATTTCTCCAAAGGTGTAG

Protein sequence

>Msa1239320

MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASSSIPETIERYRNHTRINSTPTPSESVENTQQLKEEAENMMKKIDLLETSKRKLLGEGLGSCSIDDLQKIEQQLERSISKIRARKTQVFREQIEQLKEKEKTLVAENAMLTEKYGNYSSQEATNDRRENIAEAEPSADQSSPSSDVETELFIGLPETRTRRISPKV*