AlfalfaGEDB | Msa0306810

M. sativa cultivar zhongmu-4 / Msa0306810

KEGG: K09260
GO: GO:0000003 GO:0000060 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0007275 GO:0008104 GO:0008134 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009911 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015031 GO:0015833 GO:0017038 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034504 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045184 GO:0045893 GO:0045935 GO:0046907 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0090567 GO:0098727 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
PFAM: PF01486.20

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0306810	AFK35913.1	88.321	137	9	1	2	131	88	224	9.48e-75	231

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0306810	sp\|O64645\|SOC1_ARATH	57.812	128	40	2	2	120	87	209	2.34e-37	129

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0306810	I3S6M1	88.321	137	9	1	2	131	88	224	4.53e-75	231

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0306810	Msa1037620	0.806217	9.156640e-50	-8.615850e-47
Msa0306810	Msa1130300	0.804481	2.115605e-49	-8.615850e-47
Msa0306810	Msa1185310	0.837425	5.238745e-57	-8.615850e-47
Msa0306810	Msa1185320	0.893375	6.667147e-75	-8.615850e-47
Msa0306810	Msa1239320	0.871151	8.499348e-67	-8.615850e-47
Msa0306810	Msa1329250	0.811397	7.147169e-51	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0306810	MtrunA17_Chr8g0351031	88.321	137	9	1	2	131	88	224	9.95e-79	231
Msa0306810	MtrunA17_Chr7g0246431	59.200	125	41	3	2	119	87	208	1.02e-41	137
Msa0306810	MtrunA17_Chr8g0351041	85.135	74	11	0	3	76	89	162	4.21e-38	126
Msa0306810	MtrunA17_Chr4g0057151	49.606	127	47	2	3	123	88	203	5.75e-29	104
Msa0306810	MtrunA17_Chr5g0420081	38.679	106	62	2	15	120	101	203	1.30e-13	65.1
Msa0306810	MtrunA17_Chr8g0366231	48.529	68	35	0	15	82	101	168	1.50e-13	65.1
Msa0306810	MtrunA17_Chr4g0018421	31.034	116	77	1	1	116	88	200	3.12e-11	58.2
Msa0306810	MtrunA17_Chr4g0061691	40.580	69	41	0	15	83	101	169	4.97e-11	58.2
Msa0306810	MtrunA17_Chr3g0097101	29.915	117	78	1	5	117	105	221	9.23e-11	57.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0306810	AT2G45660.1	57.812	128	40	2	2	120	87	209	2.38e-38	129
Msa0306810	AT5G62165.3	49.206	126	51	2	2	120	87	206	2.28e-32	114
Msa0306810	AT5G62165.1	49.206	126	51	2	2	120	87	206	2.28e-32	114
Msa0306810	AT5G62165.2	49.206	126	51	2	2	120	87	206	2.28e-32	114
Msa0306810	AT2G45660.2	73.611	72	19	0	2	73	87	158	3.26e-30	106
Msa0306810	AT5G51870.1	44.715	123	65	1	1	123	87	206	1.85e-28	103
Msa0306810	AT4G22950.3	48.092	131	63	2	3	129	87	216	3.83e-27	100
Msa0306810	AT4G22950.1	48.092	131	63	2	3	129	87	216	3.83e-27	100
Msa0306810	AT5G51870.4	41.481	135	64	2	1	123	87	218	1.80e-26	99.0
Msa0306810	AT5G51870.3	41.481	135	64	2	1	123	97	228	2.01e-26	99.0
Msa0306810	AT4G22950.2	56.627	83	36	0	3	85	87	169	3.00e-24	92.0
Msa0306810	AT5G62165.15	48.077	104	41	2	24	120	56	153	6.85e-24	90.5
Msa0306810	AT5G62165.5	48.077	104	41	2	24	120	56	153	6.85e-24	90.5
Msa0306810	AT5G62165.17	58.571	70	29	0	2	71	87	156	2.76e-23	89.0
Msa0306810	AT5G62165.12	58.571	70	29	0	2	71	87	156	2.76e-23	89.0
Msa0306810	AT5G62165.11	58.571	70	29	0	2	71	87	156	2.76e-23	89.0
Msa0306810	AT5G62165.10	42.857	126	45	3	2	120	87	192	1.65e-22	88.2
Msa0306810	AT5G62165.4	42.857	126	45	3	2	120	87	192	1.65e-22	88.2
Msa0306810	AT4G11880.4	45.038	131	68	1	3	129	88	218	2.82e-20	82.8
Msa0306810	AT4G11880.1	45.038	131	68	1	3	129	88	218	2.82e-20	82.8
Msa0306810	AT5G51860.1	37.302	126	74	2	1	123	87	210	1.00e-19	81.3
Msa0306810	AT5G51860.2	38.525	122	67	3	2	123	88	201	2.28e-18	77.4
Msa0306810	AT5G62165.6	51.562	64	31	0	2	65	87	150	2.62e-18	76.3
Msa0306810	AT5G62165.9	51.562	64	31	0	2	65	87	150	2.62e-18	76.3
Msa0306810	AT5G62165.7	51.562	64	31	0	2	65	87	150	2.62e-18	76.3
Msa0306810	AT5G62165.8	51.562	64	31	0	2	65	87	150	2.62e-18	76.3
Msa0306810	AT5G62165.13	51.562	64	31	0	2	65	87	150	2.62e-18	76.3
Msa0306810	AT4G11880.2	44.565	92	51	0	3	94	88	179	3.57e-17	73.9
Msa0306810	AT4G11880.3	44.565	92	51	0	3	94	88	179	3.57e-17	73.9
Msa0306810	AT5G51870.2	54.237	59	27	0	1	59	87	145	1.24e-15	69.7
Msa0306810	AT5G51870.5	55.172	58	26	0	2	59	111	168	2.39e-15	69.3
Msa0306810	AT5G62165.16	40.385	104	35	3	24	120	56	139	1.03e-13	63.9
Msa0306810	AT1G69120.3	45.070	71	39	0	15	85	39	109	1.03e-12	62.4
Msa0306810	AT1G26310.1	46.479	71	38	0	15	85	103	173	1.61e-12	62.8
Msa0306810	AT1G69120.2	45.070	71	39	0	15	85	101	171	3.46e-12	61.6
Msa0306810	AT1G69120.1	45.070	71	39	0	15	85	101	171	5.05e-12	61.2
Msa0306810	AT5G60910.2	38.144	97	58	1	15	111	39	133	3.39e-11	58.2
Msa0306810	AT5G60910.1	36.538	104	64	1	8	111	94	195	6.63e-11	58.2

Find 29 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATGCGTCTTGTTCTTGTTTC+TGG	0.122694	2_3:-65929779	None:intergenic
CATTCCCTCAGGAAACTCTT+AGG	0.282812	2_3:+65928558	Msa0306810:intron
GCATAGTCAGAGGGATTAAT+CGG	0.403673	2_3:-65929829	None:intergenic
AAACTCTTAGGAGAAGGTCT+AGG	0.447821	2_3:+65928570	Msa0306810:CDS
TCCTCAACTAGCTACACCTT+TGG	0.462501	2_3:-65929806	None:intergenic
TATACAATGCAAATGTAGTA+AGG	0.483810	2_3:+65930017	Msa0306810:three_prime_UTR
AAGCAAAATTCGAGCAAGAA+AGG	0.486364	2_3:+65928647	Msa0306810:CDS
AATTGAGCAGCTAAAGGAAA+AGG	0.487373	2_3:+65928767	Msa0306810:CDS
TTATATATTACAGCAATTGA+AGG	0.500168	2_3:+65928382	Msa0306810:intron
TCAGTCTCCACATCTGAACT+TGG	0.501611	2_3:-65929740	None:intergenic
GTGGAGACTGAATTGTTCAT+TGG	0.509005	2_3:+65929752	Msa0306810:CDS
ATATGACCCGTGCGGTAGCA+CGG	0.520929	2_3:-65929997	None:intergenic
ATCATTCAGATAGATAATAG+TGG	0.540306	2_3:+65929928	Msa0306810:three_prime_UTR
AACTCTTAGGAGAAGGTCTA+GGG	0.544433	2_3:+65928571	Msa0306810:CDS
GGAACAAATTGAGCAGCTAA+AGG	0.548309	2_3:+65928761	Msa0306810:CDS
TCCAAAGGTGTAGCTAGTTG+AGG	0.555857	2_3:+65929805	Msa0306810:exon
CACAGGAAGCAACAAATGAT+CGG	0.559990	2_3:+65929672	Msa0306810:intron
GACCCGTGCGGTAGCACGGG+TGG	0.563565	2_3:-65929993	None:intergenic
CTCAGGAAACTCTTAGGAGA+AGG	0.565759	2_3:+65928564	Msa0306810:intron
TATGACCCGTGCGGTAGCAC+GGG	0.571184	2_3:-65929996	None:intergenic
TTCCACCCGTGCTACCGCAC+GGG	0.574518	2_3:+65929991	Msa0306810:three_prime_UTR
ATTTACCTTCTCTGTGAGCA+TGG	0.576272	2_3:-65929345	None:intergenic
GGACTACTTTGATCTGCAGA+AGG	0.576693	2_3:-65929719	None:intergenic
TTTCCACCCGTGCTACCGCA+CGG	0.587270	2_3:+65929990	Msa0306810:three_prime_UTR
ACCTTCTTGAGACTTCAAAA+CGG	0.589369	2_3:+65928435	Msa0306810:CDS
AAATGCCATGCTCACAGAGA+AGG	0.595558	2_3:+65929340	Msa0306810:CDS
AAGTAGTCCAAGTTCAGATG+TGG	0.602735	2_3:+65929733	Msa0306810:CDS
AACAAGACGCATTTCTCCAA+AGG	0.605530	2_3:+65929790	Msa0306810:CDS
TGCATTGTATATGACCCGTG+CGG	0.755286	2_3:-65930005	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	CGTAAAATTTAAAATTATAT+AGG	-	chr2_3:65928694-65928713	None:intergenic	10.0%
!!!	CGTAAAATTTAAAATTATAT+AGG	-	chr2_3:65928694-65928713	None:intergenic	10.0%
!!	AAGTTGTTTATATATTTAAC+AGG	+	chr2_3:65928791-65928810	Msa0306810:intron	15.0%
!!!	AAAAATGTTTGTTATCAATT+AGG	+	chr2_3:65928846-65928865	Msa0306810:intron	15.0%
!!!	ACTAATCAAATTTTGAATAA+AGG	-	chr2_3:65929034-65929053	None:intergenic	15.0%
!!!	AATTATTTTGAATACAATTC+AGG	+	chr2_3:65929298-65929317	Msa0306810:intron	15.0%
!!	GGAAATTTATTAATGTAAAA+AGG	+	chr2_3:65929468-65929487	Msa0306810:intron	15.0%
!!	AAGTTGTTTATATATTTAAC+AGG	+	chr2_3:65928791-65928810	Msa0306810:intron	15.0%
!!!	AAAAATGTTTGTTATCAATT+AGG	+	chr2_3:65928846-65928865	Msa0306810:intron	15.0%
!!!	ACTAATCAAATTTTGAATAA+AGG	-	chr2_3:65929034-65929053	None:intergenic	15.0%
!!!	AATTATTTTGAATACAATTC+AGG	+	chr2_3:65929298-65929317	Msa0306810:intron	15.0%
!!	GGAAATTTATTAATGTAAAA+AGG	+	chr2_3:65929468-65929487	Msa0306810:intron	15.0%
!!	TTATATATTACAGCAATTGA+AGG	+	chr2_3:65928382-65928401	Msa0306810:intron	20.0%
!!	TAATCTGTTCATTATAAGTA+AGG	-	chr2_3:65928521-65928540	None:intergenic	20.0%
!!	TGTTTATATATTTAACAGGA+TGG	+	chr2_3:65928795-65928814	Msa0306810:intron	20.0%
!!!	TCAATTTGTTATAAGATTTG+TGG	+	chr2_3:65929111-65929130	Msa0306810:intron	20.0%
!!!	TGAAGCTTTTTTTATTTTCT+TGG	-	chr2_3:65929222-65929241	None:intergenic	20.0%
!!	TTTCAAGATTTCTATTAATC+TGG	-	chr2_3:65929421-65929440	None:intergenic	20.0%
!!	AGACGATAAAAAAATGAAAA+AGG	-	chr2_3:65929526-65929545	None:intergenic	20.0%
!!	ACTATGCAAAAGAAAAATAA+GGG	+	chr2_3:65929845-65929864	Msa0306810:three_prime_UTR	20.0%
!!	TTATATATTACAGCAATTGA+AGG	+	chr2_3:65928382-65928401	Msa0306810:intron	20.0%
!!	TAATCTGTTCATTATAAGTA+AGG	-	chr2_3:65928521-65928540	None:intergenic	20.0%
!!	TGTTTATATATTTAACAGGA+TGG	+	chr2_3:65928795-65928814	Msa0306810:intron	20.0%
!!!	TCAATTTGTTATAAGATTTG+TGG	+	chr2_3:65929111-65929130	Msa0306810:intron	20.0%
!!!	TGAAGCTTTTTTTATTTTCT+TGG	-	chr2_3:65929222-65929241	None:intergenic	20.0%
!!	TTTCAAGATTTCTATTAATC+TGG	-	chr2_3:65929421-65929440	None:intergenic	20.0%
!!	AGACGATAAAAAAATGAAAA+AGG	-	chr2_3:65929526-65929545	None:intergenic	20.0%
!!	ACTATGCAAAAGAAAAATAA+GGG	+	chr2_3:65929845-65929864	Msa0306810:three_prime_UTR	20.0%
!!	TACTTTGGTGTATTTAAACA+TGG	-	chr2_3:65928196-65928215	None:intergenic	25.0%
!!	CTTTTATGCAAATCTTACTT+TGG	-	chr2_3:65928211-65928230	None:intergenic	25.0%
!!!	ATTTCAGGCATTGATTATTA+GGG	-	chr2_3:65928248-65928267	None:intergenic	25.0%
!!!	TATTTCAGGCATTGATTATT+AGG	-	chr2_3:65928249-65928268	None:intergenic	25.0%
!	AGGAAATGTTTCAAATATGA+GGG	-	chr2_3:65928276-65928295	None:intergenic	25.0%
!	TATGCTTACTTATTTAGACA+CGG	+	chr2_3:65928318-65928337	Msa0306810:intron	25.0%
!!	AATCTTTTGTAGTTCATCAA+TGG	-	chr2_3:65928604-65928623	None:intergenic	25.0%
!	TCAATTAGGATCACTTTATT+AGG	+	chr2_3:65928860-65928879	Msa0306810:intron	25.0%
!	CAATTAGGATCACTTTATTA+GGG	+	chr2_3:65928861-65928880	Msa0306810:intron	25.0%
!	TTTGAATTATATGTACCAAG+TGG	-	chr2_3:65929064-65929083	None:intergenic	25.0%
!!!	ATTGTGATGCAATTGATTTT+GGG	-	chr2_3:65929088-65929107	None:intergenic	25.0%
!!!	AATTGTGATGCAATTGATTT+TGG	-	chr2_3:65929089-65929108	None:intergenic	25.0%
!	TTTGAATGAGCAAATTTAGT+GGG	-	chr2_3:65929394-65929413	None:intergenic	25.0%
!	CAAATCTTTCAACTATAGAA+TGG	+	chr2_3:65929613-65929632	Msa0306810:intron	25.0%
!	GACTATGCAAAAGAAAAATA+AGG	+	chr2_3:65929844-65929863	Msa0306810:three_prime_UTR	25.0%
!	ATCATTCAGATAGATAATAG+TGG	+	chr2_3:65929928-65929947	Msa0306810:three_prime_UTR	25.0%
!	TATACAATGCAAATGTAGTA+AGG	+	chr2_3:65930017-65930036	Msa0306810:three_prime_UTR	25.0%
!!	TACTTTGGTGTATTTAAACA+TGG	-	chr2_3:65928196-65928215	None:intergenic	25.0%
!!	CTTTTATGCAAATCTTACTT+TGG	-	chr2_3:65928211-65928230	None:intergenic	25.0%
!!!	ATTTCAGGCATTGATTATTA+GGG	-	chr2_3:65928248-65928267	None:intergenic	25.0%
!!!	TATTTCAGGCATTGATTATT+AGG	-	chr2_3:65928249-65928268	None:intergenic	25.0%
!	AGGAAATGTTTCAAATATGA+GGG	-	chr2_3:65928276-65928295	None:intergenic	25.0%
!	TATGCTTACTTATTTAGACA+CGG	+	chr2_3:65928318-65928337	Msa0306810:intron	25.0%
!!	AATCTTTTGTAGTTCATCAA+TGG	-	chr2_3:65928604-65928623	None:intergenic	25.0%
!	TCAATTAGGATCACTTTATT+AGG	+	chr2_3:65928860-65928879	Msa0306810:intron	25.0%
!	CAATTAGGATCACTTTATTA+GGG	+	chr2_3:65928861-65928880	Msa0306810:intron	25.0%
!	TTTGAATTATATGTACCAAG+TGG	-	chr2_3:65929064-65929083	None:intergenic	25.0%
!!!	ATTGTGATGCAATTGATTTT+GGG	-	chr2_3:65929088-65929107	None:intergenic	25.0%
!!!	AATTGTGATGCAATTGATTT+TGG	-	chr2_3:65929089-65929108	None:intergenic	25.0%
!	TTTGAATGAGCAAATTTAGT+GGG	-	chr2_3:65929394-65929413	None:intergenic	25.0%
!	CAAATCTTTCAACTATAGAA+TGG	+	chr2_3:65929613-65929632	Msa0306810:intron	25.0%
!	GACTATGCAAAAGAAAAATA+AGG	+	chr2_3:65929844-65929863	Msa0306810:three_prime_UTR	25.0%
!	ATCATTCAGATAGATAATAG+TGG	+	chr2_3:65929928-65929947	Msa0306810:three_prime_UTR	25.0%
!	TATACAATGCAAATGTAGTA+AGG	+	chr2_3:65930017-65930036	Msa0306810:three_prime_UTR	25.0%
	CAGGAAATGTTTCAAATATG+AGG	-	chr2_3:65928277-65928296	None:intergenic	30.0%
	GAAACATTTCCTGTGTAATT+TGG	+	chr2_3:65928284-65928303	Msa0306810:intron	30.0%
	AATTGAACTCCAAATTACAC+AGG	-	chr2_3:65928296-65928315	None:intergenic	30.0%
	ATTTGTAATTTCATTCCCTC+AGG	+	chr2_3:65928547-65928566	Msa0306810:intron	30.0%
	TTAAATAGCAGTCACGATTA+AGG	+	chr2_3:65928886-65928905	Msa0306810:intron	30.0%
	TGATTAGTATTAATGCCACT+TGG	+	chr2_3:65929046-65929065	Msa0306810:intron	30.0%
!	TTTTTGATGTAATGCTAGCT+GGG	-	chr2_3:65929269-65929288	None:intergenic	30.0%
	AGGTAAATTCACTTTCTATC+TGG	+	chr2_3:65929360-65929379	Msa0306810:intron	30.0%
	TTGAATGAGCAAATTTAGTG+GGG	-	chr2_3:65929393-65929412	None:intergenic	30.0%
	CTTTGAATGAGCAAATTTAG+TGG	-	chr2_3:65929395-65929414	None:intergenic	30.0%
	GAAAAAAGTTCAAATGACGA+CGG	+	chr2_3:65929447-65929466	Msa0306810:intron	30.0%
	AAAGTTACAGCTAGCAAATT+TGG	-	chr2_3:65929643-65929662	None:intergenic	30.0%
	GTAACTTTACTATTCATCAC+AGG	+	chr2_3:65929655-65929674	Msa0306810:intron	30.0%
!	TTTTCTTTTGCATAGTCAGA+GGG	-	chr2_3:65929841-65929860	None:intergenic	30.0%
!	TTTTTCTTTTGCATAGTCAG+AGG	-	chr2_3:65929842-65929861	None:intergenic	30.0%
	GCAAAAGAAAAATAAGGGTT+AGG	+	chr2_3:65929850-65929869	Msa0306810:three_prime_UTR	30.0%
	CAGGAAATGTTTCAAATATG+AGG	-	chr2_3:65928277-65928296	None:intergenic	30.0%
	GAAACATTTCCTGTGTAATT+TGG	+	chr2_3:65928284-65928303	Msa0306810:intron	30.0%
	AATTGAACTCCAAATTACAC+AGG	-	chr2_3:65928296-65928315	None:intergenic	30.0%
	ATTTGTAATTTCATTCCCTC+AGG	+	chr2_3:65928547-65928566	Msa0306810:intron	30.0%
	TTAAATAGCAGTCACGATTA+AGG	+	chr2_3:65928886-65928905	Msa0306810:intron	30.0%
	TGATTAGTATTAATGCCACT+TGG	+	chr2_3:65929046-65929065	Msa0306810:intron	30.0%
!	TTTTTGATGTAATGCTAGCT+GGG	-	chr2_3:65929269-65929288	None:intergenic	30.0%
	AGGTAAATTCACTTTCTATC+TGG	+	chr2_3:65929360-65929379	Msa0306810:intron	30.0%
	TTGAATGAGCAAATTTAGTG+GGG	-	chr2_3:65929393-65929412	None:intergenic	30.0%
	CTTTGAATGAGCAAATTTAG+TGG	-	chr2_3:65929395-65929414	None:intergenic	30.0%
	GAAAAAAGTTCAAATGACGA+CGG	+	chr2_3:65929447-65929466	Msa0306810:intron	30.0%
	AAAGTTACAGCTAGCAAATT+TGG	-	chr2_3:65929643-65929662	None:intergenic	30.0%
	GTAACTTTACTATTCATCAC+AGG	+	chr2_3:65929655-65929674	Msa0306810:intron	30.0%
!	TTTTCTTTTGCATAGTCAGA+GGG	-	chr2_3:65929841-65929860	None:intergenic	30.0%
!	TTTTTCTTTTGCATAGTCAG+AGG	-	chr2_3:65929842-65929861	None:intergenic	30.0%
	GCAAAAGAAAAATAAGGGTT+AGG	+	chr2_3:65929850-65929869	Msa0306810:three_prime_UTR	30.0%
!	AATATGAGGGCATGTATTTC+AGG	-	chr2_3:65928263-65928282	None:intergenic	35.0%
	ACCTTCTTGAGACTTCAAAA+CGG	+	chr2_3:65928435-65928454	Msa0306810:CDS	35.0%
	AAGCAAAATTCGAGCAAGAA+AGG	+	chr2_3:65928647-65928666	Msa0306810:CDS	35.0%
	CCTGAGTCTGAATAATAGAA+AGG	-	chr2_3:65928734-65928753	None:intergenic	35.0%
	CCTTTCTATTATTCAGACTC+AGG	+	chr2_3:65928731-65928750	Msa0306810:intron	35.0%
!	TTATTCAGACTCAGGTTTTC+AGG	+	chr2_3:65928739-65928758	Msa0306810:intron	35.0%
!	TATTCAGACTCAGGTTTTCA+GGG	+	chr2_3:65928740-65928759	Msa0306810:intron	35.0%
	AATTGAGCAGCTAAAGGAAA+AGG	+	chr2_3:65928767-65928786	Msa0306810:CDS	35.0%
	GAAAGATGCAATCTCAATTG+TGG	-	chr2_3:65928962-65928981	None:intergenic	35.0%
!	CTTTTTGATGTAATGCTAGC+TGG	-	chr2_3:65929270-65929289	None:intergenic	35.0%
!	AATATGAGGGCATGTATTTC+AGG	-	chr2_3:65928263-65928282	None:intergenic	35.0%
	ACCTTCTTGAGACTTCAAAA+CGG	+	chr2_3:65928435-65928454	Msa0306810:CDS	35.0%
	AAGCAAAATTCGAGCAAGAA+AGG	+	chr2_3:65928647-65928666	Msa0306810:CDS	35.0%
	CCTGAGTCTGAATAATAGAA+AGG	-	chr2_3:65928734-65928753	None:intergenic	35.0%
	CCTTTCTATTATTCAGACTC+AGG	+	chr2_3:65928731-65928750	Msa0306810:intron	35.0%
!	TTATTCAGACTCAGGTTTTC+AGG	+	chr2_3:65928739-65928758	Msa0306810:intron	35.0%
!	TATTCAGACTCAGGTTTTCA+GGG	+	chr2_3:65928740-65928759	Msa0306810:intron	35.0%
	AATTGAGCAGCTAAAGGAAA+AGG	+	chr2_3:65928767-65928786	Msa0306810:CDS	35.0%
	GAAAGATGCAATCTCAATTG+TGG	-	chr2_3:65928962-65928981	None:intergenic	35.0%
!	CTTTTTGATGTAATGCTAGC+TGG	-	chr2_3:65929270-65929289	None:intergenic	35.0%
!!!	ACCGTTTTGAAGTCTCAAGA+AGG	-	chr2_3:65928439-65928458	None:intergenic	40.0%
	TTCTCCTAAGAGTTTCCTGA+GGG	-	chr2_3:65928565-65928584	None:intergenic	40.0%
	AAACTCTTAGGAGAAGGTCT+AGG	+	chr2_3:65928570-65928589	Msa0306810:CDS	40.0%
	AACTCTTAGGAGAAGGTCTA+GGG	+	chr2_3:65928571-65928590	Msa0306810:CDS	40.0%
	GGAACAAATTGAGCAGCTAA+AGG	+	chr2_3:65928761-65928780	Msa0306810:CDS	40.0%
	AAAGGTTCGAAACTGCAATC+TGG	-	chr2_3:65929016-65929035	None:intergenic	40.0%
!	CATGGCATTTTCAGCAACTA+GGG	-	chr2_3:65929330-65929349	None:intergenic	40.0%
	ATTTACCTTCTCTGTGAGCA+TGG	-	chr2_3:65929348-65929367	None:intergenic	40.0%
	CACAGGAAGCAACAAATGAT+CGG	+	chr2_3:65929672-65929691	Msa0306810:intron	40.0%
	AAGTAGTCCAAGTTCAGATG+TGG	+	chr2_3:65929733-65929752	Msa0306810:CDS	40.0%
	GTGGAGACTGAATTGTTCAT+TGG	+	chr2_3:65929752-65929771	Msa0306810:CDS	40.0%
!	ATGCGTCTTGTTCTTGTTTC+TGG	-	chr2_3:65929782-65929801	None:intergenic	40.0%
	AACAAGACGCATTTCTCCAA+AGG	+	chr2_3:65929790-65929809	Msa0306810:CDS	40.0%
	GCATAGTCAGAGGGATTAAT+CGG	-	chr2_3:65929832-65929851	None:intergenic	40.0%
!!!	ACCGTTTTGAAGTCTCAAGA+AGG	-	chr2_3:65928439-65928458	None:intergenic	40.0%
	TTCTCCTAAGAGTTTCCTGA+GGG	-	chr2_3:65928565-65928584	None:intergenic	40.0%
	AAACTCTTAGGAGAAGGTCT+AGG	+	chr2_3:65928570-65928589	Msa0306810:CDS	40.0%
	AACTCTTAGGAGAAGGTCTA+GGG	+	chr2_3:65928571-65928590	Msa0306810:CDS	40.0%
	GGAACAAATTGAGCAGCTAA+AGG	+	chr2_3:65928761-65928780	Msa0306810:CDS	40.0%
	AAAGGTTCGAAACTGCAATC+TGG	-	chr2_3:65929016-65929035	None:intergenic	40.0%
!	CATGGCATTTTCAGCAACTA+GGG	-	chr2_3:65929330-65929349	None:intergenic	40.0%
	ATTTACCTTCTCTGTGAGCA+TGG	-	chr2_3:65929348-65929367	None:intergenic	40.0%
	CACAGGAAGCAACAAATGAT+CGG	+	chr2_3:65929672-65929691	Msa0306810:intron	40.0%
	AAGTAGTCCAAGTTCAGATG+TGG	+	chr2_3:65929733-65929752	Msa0306810:CDS	40.0%
	GTGGAGACTGAATTGTTCAT+TGG	+	chr2_3:65929752-65929771	Msa0306810:CDS	40.0%
!	ATGCGTCTTGTTCTTGTTTC+TGG	-	chr2_3:65929782-65929801	None:intergenic	40.0%
	AACAAGACGCATTTCTCCAA+AGG	+	chr2_3:65929790-65929809	Msa0306810:CDS	40.0%
	GCATAGTCAGAGGGATTAAT+CGG	-	chr2_3:65929832-65929851	None:intergenic	40.0%
	CATTCCCTCAGGAAACTCTT+AGG	+	chr2_3:65928558-65928577	Msa0306810:intron	45.0%
	CTTCTCCTAAGAGTTTCCTG+AGG	-	chr2_3:65928566-65928585	None:intergenic	45.0%
	CTCAGGAAACTCTTAGGAGA+AGG	+	chr2_3:65928564-65928583	Msa0306810:intron	45.0%
	GCAATCTGGTCGCAACATAA+TGG	-	chr2_3:65929002-65929021	None:intergenic	45.0%
!	GCATGGCATTTTCAGCAACT+AGG	-	chr2_3:65929331-65929350	None:intergenic	45.0%
	AAATGCCATGCTCACAGAGA+AGG	+	chr2_3:65929340-65929359	Msa0306810:CDS	45.0%
	GGACTACTTTGATCTGCAGA+AGG	-	chr2_3:65929722-65929741	None:intergenic	45.0%
	TCAGTCTCCACATCTGAACT+TGG	-	chr2_3:65929743-65929762	None:intergenic	45.0%
!	TCCAAAGGTGTAGCTAGTTG+AGG	+	chr2_3:65929805-65929824	Msa0306810:exon	45.0%
	TCCTCAACTAGCTACACCTT+TGG	-	chr2_3:65929809-65929828	None:intergenic	45.0%
	TGCATTGTATATGACCCGTG+CGG	-	chr2_3:65930008-65930027	None:intergenic	45.0%
	CATTCCCTCAGGAAACTCTT+AGG	+	chr2_3:65928558-65928577	Msa0306810:intron	45.0%
	CTTCTCCTAAGAGTTTCCTG+AGG	-	chr2_3:65928566-65928585	None:intergenic	45.0%
	CTCAGGAAACTCTTAGGAGA+AGG	+	chr2_3:65928564-65928583	Msa0306810:intron	45.0%
	GCAATCTGGTCGCAACATAA+TGG	-	chr2_3:65929002-65929021	None:intergenic	45.0%
!	GCATGGCATTTTCAGCAACT+AGG	-	chr2_3:65929331-65929350	None:intergenic	45.0%
	AAATGCCATGCTCACAGAGA+AGG	+	chr2_3:65929340-65929359	Msa0306810:CDS	45.0%
	GGACTACTTTGATCTGCAGA+AGG	-	chr2_3:65929722-65929741	None:intergenic	45.0%
	TCAGTCTCCACATCTGAACT+TGG	-	chr2_3:65929743-65929762	None:intergenic	45.0%
!	TCCAAAGGTGTAGCTAGTTG+AGG	+	chr2_3:65929805-65929824	Msa0306810:exon	45.0%
	TCCTCAACTAGCTACACCTT+TGG	-	chr2_3:65929809-65929828	None:intergenic	45.0%
	TGCATTGTATATGACCCGTG+CGG	-	chr2_3:65930008-65930027	None:intergenic	45.0%
!!!	TTTTTTTTTTGTAAAAAAAA+AGG	+	chr2_3:65928158-65928177	Msa0306810:intron	5.0%
!!!	CTATATAATTTTAAATTTTA+CGG	+	chr2_3:65928692-65928711	Msa0306810:intron	5.0%
!!!	TTTTTTTTTTGTAAAAAAAA+AGG	+	chr2_3:65928158-65928177	Msa0306810:intron	5.0%
!!!	CTATATAATTTTAAATTTTA+CGG	+	chr2_3:65928692-65928711	Msa0306810:intron	5.0%
	ATATGACCCGTGCGGTAGCA+CGG	-	chr2_3:65930000-65930019	None:intergenic	55.0%
	ATATGACCCGTGCGGTAGCA+CGG	-	chr2_3:65930000-65930019	None:intergenic	55.0%
	TTTCCACCCGTGCTACCGCA+CGG	+	chr2_3:65929990-65930009	Msa0306810:three_prime_UTR	60.0%
	TATGACCCGTGCGGTAGCAC+GGG	-	chr2_3:65929999-65930018	None:intergenic	60.0%
	TTTCCACCCGTGCTACCGCA+CGG	+	chr2_3:65929990-65930009	Msa0306810:three_prime_UTR	60.0%
	TATGACCCGTGCGGTAGCAC+GGG	-	chr2_3:65929999-65930018	None:intergenic	60.0%
	TTCCACCCGTGCTACCGCAC+GGG	+	chr2_3:65929991-65930010	Msa0306810:three_prime_UTR	65.0%
	TTCCACCCGTGCTACCGCAC+GGG	+	chr2_3:65929991-65930010	Msa0306810:three_prime_UTR	65.0%
	GACCCGTGCGGTAGCACGGG+TGG	-	chr2_3:65929996-65930015	None:intergenic	75.0%
	GACCCGTGCGGTAGCACGGG+TGG	-	chr2_3:65929996-65930015	None:intergenic	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	65928139	65930108	65928139	ID=Msa0306810;Name=Msa0306810
chr2_3	mRNA	65928139	65930108	65928139	ID=Msa0306810-mRNA-1;Parent=Msa0306810;Name=Msa0306810-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0\|0.6\|0.5\|0.83\|1\|1\|6\|291\|131
chr2_3	exon	65928139	65928147	65928139	ID=Msa0306810-mRNA-1:exon:21940;Parent=Msa0306810-mRNA-1
chr2_3	exon	65928395	65928456	65928395	ID=Msa0306810-mRNA-1:exon:21941;Parent=Msa0306810-mRNA-1
chr2_3	exon	65928569	65928668	65928569	ID=Msa0306810-mRNA-1:exon:21942;Parent=Msa0306810-mRNA-1
chr2_3	exon	65928747	65928788	65928747	ID=Msa0306810-mRNA-1:exon:21943;Parent=Msa0306810-mRNA-1
chr2_3	exon	65929320	65929361	65929320	ID=Msa0306810-mRNA-1:exon:21944;Parent=Msa0306810-mRNA-1
chr2_3	exon	65929677	65930108	65929677	ID=Msa0306810-mRNA-1:exon:21945;Parent=Msa0306810-mRNA-1
chr2_3	CDS	65928139	65928147	65928139	ID=Msa0306810-mRNA-1:cds;Parent=Msa0306810-mRNA-1
chr2_3	CDS	65928395	65928456	65928395	ID=Msa0306810-mRNA-1:cds;Parent=Msa0306810-mRNA-1
chr2_3	CDS	65928569	65928668	65928569	ID=Msa0306810-mRNA-1:cds;Parent=Msa0306810-mRNA-1
chr2_3	CDS	65928747	65928788	65928747	ID=Msa0306810-mRNA-1:cds;Parent=Msa0306810-mRNA-1
chr2_3	CDS	65929320	65929361	65929320	ID=Msa0306810-mRNA-1:cds;Parent=Msa0306810-mRNA-1
chr2_3	CDS	65929677	65929817	65929677	ID=Msa0306810-mRNA-1:cds;Parent=Msa0306810-mRNA-1
chr2_3	three_prime_UTR	65929818	65930108	65929818	ID=Msa0306810-mRNA-1:three_prime_utr;Parent=Msa0306810-mRNA-1

Gene Sequence

>Msa0306810

ATGGTGGAACAATTGAAGGAAGAAGCAGAAAACATGATGAAAAAGATTGACCTTCTTGAGACTTCAAAACGGAAACTCTTAGGAGAAGGTCTAGGGTCTTGTTCCATTGATGAACTACAAAAGATTGAACAACAGTTAGAGAGAAGTATAAGCAAAATTCGAGCAAGAAAGACTCAGGTTTTCAGGGAACAAATTGAGCAGCTAAAGGAAAAGGAAAAAACCCTAGTTGCTGAAAATGCCATGCTCACAGAGAAGGAAGCAACAAATGATCGGAGAGAGAATATAGCTGAAGCTGAACCTTCTGCAGATCAAAGTAGTCCAAGTTCAGATGTGGAGACTGAATTGTTCATTGGTCTTCCAGAAACAAGAACAAGACGCATTTCTCCAAAGGTGTAG

Protein sequence

>Msa0306810

MVEQLKEEAENMMKKIDLLETSKRKLLGEGLGSCSIDELQKIEQQLERSISKIRARKTQVFREQIEQLKEKEKTLVAENAMLTEKEATNDRRENIAEAEPSADQSSPSSDVETELFIGLPETRTRRISPKV*