AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1240430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1240430 MtrunA17_Chr8g0353191 98.611 360 5 0 1 360 1 360 0.0 740
Msa1240430 MtrunA17_Chr5g0441831 70.833 360 93 2 1 360 7 354 0.0 548
Msa1240430 MtrunA17_Chr1g0149621 62.772 368 120 5 1 359 1 360 3.07e-169 476
Msa1240430 MtrunA17_Chr7g0228921 24.908 273 159 13 66 317 395 642 1.02e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1240430 AT5G13500.2 76.111 360 84 1 1 360 1 358 0.0 576
Msa1240430 AT5G13500.3 76.111 360 84 1 1 360 1 358 0.0 576
Msa1240430 AT5G13500.1 76.111 360 84 1 1 360 1 358 0.0 576
Msa1240430 AT2G25260.1 70.530 302 89 0 58 359 57 358 2.85e-169 476
Msa1240430 AT5G25265.1 69.497 318 92 2 47 359 49 366 7.79e-169 475
Msa1240430 AT3G01720.1 23.051 295 187 10 41 317 370 642 1.16e-11 66.6

Find 116 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATATTCTTGAATGATATTT+TGG 0.156597 8_2:-22927933 Msa1240430:three_prime_UTR
CATCCATGTAGGAGCAATTT+TGG 0.157802 8_2:+22929989 None:intergenic
TTCCTTTGCTACATATAATT+TGG 0.195551 8_2:-22932115 Msa1240430:CDS
TGTAGACATACCACACTTTC+AGG 0.233658 8_2:+22929191 None:intergenic
ATTTAAATAGTTGTATTAAA+AGG 0.253618 8_2:+22927982 None:intergenic
TCTACCTTTCTGATAATTAC+AGG 0.273833 8_2:+22930497 None:intergenic
TTTGTGTTCTTCACATGTTC+AGG 0.290321 8_2:+22932009 None:intergenic
CCGGAGACCGACAAAGCTTT+TGG 0.293985 8_2:-22929939 Msa1240430:CDS
CTGATGATATGTTTGGTTCT+TGG 0.302314 8_2:-22932141 Msa1240430:CDS
GAATTGACTTACGGTAAAAT+TGG 0.313648 8_2:-22929290 Msa1240430:CDS
GCATTGCCATTTGTTGTAGA+TGG 0.329461 8_2:+22931942 None:intergenic
TACATTATTCATTATACTTA+CGG 0.354634 8_2:-22929569 Msa1240430:CDS
ACCATTACTGATGATATGTT+TGG 0.354825 8_2:-22932148 Msa1240430:CDS
TGTTCAGGCATCTCAACAAT+AGG 0.356782 8_2:+22932024 None:intergenic
GGAGGTAATGGCAAGTTTCT+TGG 0.358268 8_2:+22929224 None:intergenic
TATTTACAATGTATCCCAAT+TGG 0.363051 8_2:+22928153 None:intergenic
ATTTACAATGTATCCCAATT+GGG 0.366685 8_2:+22928154 None:intergenic
TTGATATCTTTCTGTCTGAT+AGG 0.369093 8_2:-22932191 Msa1240430:five_prime_UTR
TGTACGCCCTCTTCCCAATC+TGG 0.371070 8_2:-22930648 Msa1240430:CDS
ACATTATTCATTATACTTAC+GGG 0.376342 8_2:-22929568 Msa1240430:CDS
CCAAAAGCTTTGTCGGTCTC+CGG 0.381162 8_2:+22929939 None:intergenic
CCTCTTCCCAATCTGGCATT+TGG 0.385015 8_2:-22930641 Msa1240430:CDS
AATGTACTTGTTGAAAGTTT+CGG 0.395815 8_2:+22929586 None:intergenic
CTTTAAATACCATGATGAAT+AGG 0.412610 8_2:+22928119 None:intergenic
CTCACCCTGTCTAGACCTTC+CGG 0.417765 8_2:+22931784 None:intergenic
TGGAAAGGCTGACAACTTGA+TGG 0.418539 8_2:-22931839 Msa1240430:CDS
TAATACAACTATTTAAATGA+AGG 0.423035 8_2:-22927977 Msa1240430:three_prime_UTR
CACCCATCCAAAAGCTTTGT+CGG 0.426464 8_2:+22929932 None:intergenic
CTTCTGCTAACATCCCCAAT+TGG 0.429086 8_2:-22928168 Msa1240430:CDS
AAGGTGTATAGTGAGGTATT+TGG 0.429135 8_2:+22928001 None:intergenic
TCAGGTGACTCTTGTAAAGA+TGG 0.438160 8_2:-22928200 Msa1240430:intron
TGTCGTCGTTGATCCTCTTC+CGG 0.440206 8_2:-22931803 Msa1240430:CDS
CTTTGTTCAGTGGCTGGAAA+AGG 0.444264 8_2:-22930800 Msa1240430:CDS
GTGACAATGATAATCCACTA+TGG 0.451326 8_2:-22932093 Msa1240430:CDS
CTGATGCCATCTACAACAAA+TGG 0.456001 8_2:-22931948 Msa1240430:CDS
TTCTGCTAACATCCCCAATT+GGG 0.459913 8_2:-22928167 Msa1240430:CDS
ATGGGCCTTTGTTCAGTGGC+TGG 0.460296 8_2:-22930806 Msa1240430:CDS
GCGAAAAGACTTCATGCTAC+AGG 0.466953 8_2:-22929750 Msa1240430:intron
GGAACACCTGGAGGAGGTAA+TGG 0.470362 8_2:+22929212 None:intergenic
ATCGGATCAATATTTGTAAC+CGG 0.473029 8_2:+22930530 None:intergenic
CTCTTCCGGAAGGTCTAGAC+AGG 0.482298 8_2:-22931789 Msa1240430:CDS
TTGAAAGTTTCGGTATCCCA+TGG 0.484134 8_2:+22929596 None:intergenic
AATGGCAAGTTTCTTGGTGG+TGG 0.485716 8_2:+22929230 None:intergenic
TTGCCAAAATTGCTCCTACA+TGG 0.492892 8_2:-22929992 Msa1240430:CDS
CCAAATGCCAGATTGGGAAG+AGG 0.493455 8_2:+22930641 None:intergenic
GAATATGTCTCACGCCATGC+AGG 0.497143 8_2:+22929774 None:intergenic
CTGTCTAGACCTTCCGGAAG+AGG 0.500411 8_2:+22931790 None:intergenic
CAAAAGCTTTGTCGGTCTCC+GGG 0.502506 8_2:+22929940 None:intergenic
CTCTCTGTCTGTTGAAACAA+AGG 0.505749 8_2:-22933474 Msa1240430:intron
GTAACCGGTCCATTCTCCTC+AGG 0.508925 8_2:+22930545 None:intergenic
TGAAAGTTTCGGTATCCCAT+GGG 0.514546 8_2:+22929597 None:intergenic
AAGTATTATCCTGAGGAGAA+TGG 0.515266 8_2:-22930554 Msa1240430:CDS
GTTCAGGCATCTCAACAATA+GGG 0.522658 8_2:+22932025 None:intergenic
AATCCTCCCATCTCTGATCC+AGG 0.523340 8_2:+22931880 None:intergenic
TGGGGACGACGGAGGGAACA+CGG 0.531083 8_2:+22933520 None:intergenic
GAGTCTACCTGGATCAGAGA+TGG 0.533196 8_2:-22931887 Msa1240430:CDS
TTCTCCTGTAATTATCAGAA+AGG 0.533563 8_2:-22930501 Msa1240430:intron
AGAGGATCAACGACGACAGT+AGG 0.536647 8_2:+22931808 None:intergenic
AACTATCCGATGATCCATAG+TGG 0.537106 8_2:+22932079 None:intergenic
GTTCCCTCCGTCGTCCCCAT+CGG 0.539278 8_2:-22933516 Msa1240430:five_prime_UTR
AATGCCGTATCATGTATTAC+TGG 0.539444 8_2:-22931924 Msa1240430:CDS
AAGAAGCAAAGGAGTCTACC+TGG 0.540779 8_2:-22931898 Msa1240430:CDS
GACCATGGGCCTTTGTTCAG+TGG 0.540787 8_2:-22930810 Msa1240430:CDS
AACTTGCCATTACCTCCTCC+AGG 0.543731 8_2:-22929218 Msa1240430:CDS
CACCAAATTATATGTAGCAA+AGG 0.545736 8_2:+22932113 None:intergenic
GTTACAAATATTGATCCGAT+TGG 0.548705 8_2:-22930527 Msa1240430:CDS
TATACCAGTAATACATGATA+CGG 0.549976 8_2:+22931920 None:intergenic
ACCAAACATATCATCAGTAA+TGG 0.550380 8_2:+22932147 None:intergenic
AGAGAGAGAGATTCTCCGAT+GGG 0.551715 8_2:+22933501 None:intergenic
TCTCCGATGGGGACGACGGA+GGG 0.553306 8_2:+22933513 None:intergenic
GTCGTTGATCCTCTTCCGGA+AGG 0.555563 8_2:-22931799 Msa1240430:CDS
CAAATGCCAGATTGGGAAGA+GGG 0.557171 8_2:+22930642 None:intergenic
ACCACACTTTCAGGAACACC+TGG 0.557951 8_2:+22929200 None:intergenic
ACTCAGGGTGAATTGACTTA+CGG 0.559352 8_2:-22929299 Msa1240430:intron
TATTTCTATGAAGATGAAAG+AGG 0.560544 8_2:-22929964 Msa1240430:CDS
GCTGTTGCATCTGCCCTGCA+TGG 0.561601 8_2:-22929788 Msa1240430:CDS
AGATTCTCCGATGGGGACGA+CGG 0.562487 8_2:+22933509 None:intergenic
TCCAGGTGTTCCTGAAAGTG+TGG 0.563076 8_2:-22929201 Msa1240430:intron
AAATACCATGATGAATAGGA+AGG 0.571694 8_2:+22928123 None:intergenic
TTTACAATGTATCCCAATTG+GGG 0.573299 8_2:+22928155 None:intergenic
GATAATCCACTATGGATCAT+CGG 0.574800 8_2:-22932085 Msa1240430:CDS
TATGAAGATGAAAGAGGACC+CGG 0.576291 8_2:-22929958 Msa1240430:CDS
GGTAATGGCAAGTTTCTTGG+TGG 0.577952 8_2:+22929227 None:intergenic
ATTACAGGAGAATTGCCAAT+CGG 0.588392 8_2:+22930512 None:intergenic
GTTCTATCAAGAACTGAGGA+AGG 0.590370 8_2:-22932231 Msa1240430:five_prime_UTR
AGTCTACCTGGATCAGAGAT+GGG 0.590857 8_2:-22931886 Msa1240430:CDS
TCTTGTAAAGATGGTGAATG+AGG 0.590924 8_2:-22928191 Msa1240430:CDS
GATAGTTTAGCTACCGAGGA+TGG 0.594389 8_2:-22932063 Msa1240430:CDS
CGGGTGTGACTACAATATGA+AGG 0.595934 8_2:-22929549 Msa1240430:intron
ATTACTGGTATAAGAAGCAA+AGG 0.598311 8_2:-22931909 Msa1240430:CDS
GCGGTCAACGCAATATGAAA+CGG 0.598357 8_2:+22931973 None:intergenic
AGTTTAGCTACCGAGGATGG+TGG 0.599053 8_2:-22932060 Msa1240430:CDS
TAATGGTGAAGCTCGTGCCA+TGG 0.610525 8_2:+22932164 None:intergenic
CTTTCAGGAACACCTGGAGG+AGG 0.611273 8_2:+22929206 None:intergenic
TTCTCCGATGGGGACGACGG+AGG 0.613605 8_2:+22933512 None:intergenic
GTTGTAGATGGCATCAGTTG+CGG 0.614966 8_2:+22931954 None:intergenic
GAAAGTTTCGGTATCCCATG+GGG 0.618074 8_2:+22929598 None:intergenic
TTATCCTGAGGAGAATGGAC+CGG 0.623990 8_2:-22930549 Msa1240430:CDS
CGTCGTTCTGAATAGACCAT+GGG 0.624386 8_2:-22930824 Msa1240430:CDS
AGCCACTGAACAAAGGCCCA+TGG 0.626962 8_2:+22930808 None:intergenic
AATATGTCTCACGCCATGCA+GGG 0.632298 8_2:+22929775 None:intergenic
ATCGGATAGTTTAGCTACCG+AGG 0.633568 8_2:-22932067 Msa1240430:CDS
GTATTAAAAGGTGTATAGTG+AGG 0.636150 8_2:+22927994 None:intergenic
ACGTCGTTCTGAATAGACCA+TGG 0.640320 8_2:-22930825 Msa1240430:CDS
ATAGAAATATTCATCCATGT+AGG 0.650200 8_2:+22929978 None:intergenic
CTTACGGTAAAATTGGTGAG+TGG 0.653033 8_2:-22929283 Msa1240430:CDS
AAAGTTTCGGTATCCCATGG+GGG 0.674004 8_2:+22929599 None:intergenic
CTACCTGGATCAGAGATGGG+AGG 0.675794 8_2:-22931883 Msa1240430:CDS
GCTTGTTCTATCAAGAACTG+AGG 0.681392 8_2:-22932235 Msa1240430:five_prime_UTR
GAGAGAGAGATTCTCCGATG+GGG 0.686852 8_2:+22933502 None:intergenic
TGTAAGGAAGTATTATCCTG+AGG 0.689724 8_2:-22930561 Msa1240430:CDS
TCTGTCTGATAGGAAGACCA+TGG 0.702643 8_2:-22932181 Msa1240430:exon
ACACTTTCAGGAACACCTGG+AGG 0.715454 8_2:+22929203 None:intergenic
TCTTCCGGAAGGTCTAGACA+GGG 0.732437 8_2:-22931788 Msa1240430:intron
GGACGACGGAGGGAACACGG+CGG 0.739182 8_2:+22933523 None:intergenic
GACAAAAGATCACATCTGCG+AGG 0.743493 8_2:-22929254 Msa1240430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTCAAATGTTAAAA+TGG + chr8_2:22930135-22930154 None:intergenic 10.0%
!!! TTTTAACATTTGAAAATAAA+AGG - chr8_2:22930135-22930154 Msa1240430:intron 10.0%
!!! AAATACATTTTATAAATGAT+TGG + chr8_2:22930451-22930470 None:intergenic 10.0%
!! TTTATAAAATGTATTTGTTT+AGG - chr8_2:22930455-22930474 Msa1240430:intron 10.0%
!! ATTTAAATAGTTGTATTAAA+AGG + chr8_2:22933517-22933536 None:intergenic 10.0%
!!! TTTAATTGTTTTTAGCTAAT+AGG + chr8_2:22927945-22927964 None:intergenic 15.0%
!! ATACAAATTAAAACAGAAAA+TGG + chr8_2:22928240-22928259 None:intergenic 15.0%
!!! ATGGATTTATTTCATTTTTT+TGG - chr8_2:22928671-22928690 Msa1240430:intron 15.0%
!!! AAATATTTTGTGTATCAATT+TGG - chr8_2:22930421-22930440 Msa1240430:intron 15.0%
!! TAAATCAATCTATCAATAAT+AGG + chr8_2:22930584-22930603 None:intergenic 15.0%
!! ATTTAAATTGTATTTACTGA+TGG + chr8_2:22930617-22930636 None:intergenic 15.0%
!!! ACAATTTTTTCATTTTCTTT+AGG + chr8_2:22930918-22930937 None:intergenic 15.0%
!! AAGAAAATGAAAAAATTGTA+AGG - chr8_2:22930919-22930938 Msa1240430:intron 15.0%
!! AAACTTCTATTTAATTGAAT+TGG - chr8_2:22931033-22931052 Msa1240430:intron 15.0%
!!! GCATATTTTTTATTTTTTTC+AGG - chr8_2:22931475-22931494 Msa1240430:intron 15.0%
!! TACATTATTCATTATACTTA+CGG - chr8_2:22931927-22931946 Msa1240430:CDS 15.0%
!! TTTACGAAATTTATCTTATT+AGG - chr8_2:22932341-22932360 Msa1240430:intron 15.0%
!! ACAATTAGATAATTATACAT+GGG + chr8_2:22932486-22932505 None:intergenic 15.0%
!! ATAATTGTATAGTATATAGA+TGG - chr8_2:22933125-22933144 Msa1240430:intron 15.0%
!! TAATTGTATAGTATATAGAT+GGG - chr8_2:22933126-22933145 Msa1240430:intron 15.0%
!! TAATACAACTATTTAAATGA+AGG - chr8_2:22933519-22933538 Msa1240430:five_prime_UTR 15.0%
!! AAGATTCTATTCTTAATGTT+TGG - chr8_2:22928395-22928414 Msa1240430:intron 20.0%
!! AAGAATGATTAACACTTTAT+AGG - chr8_2:22928553-22928572 Msa1240430:intron 20.0%
!!! TAATGAGTTGGATAAAAATA+TGG - chr8_2:22928941-22928960 Msa1240430:intron 20.0%
!! AATAAGAAACAGTTATATTG+CGG - chr8_2:22929060-22929079 Msa1240430:intron 20.0%
!! TGCTAGAATCAAAATTTAAA+TGG + chr8_2:22929129-22929148 None:intergenic 20.0%
!! ATACTATTAATTCAATAAGC+TGG + chr8_2:22929802-22929821 None:intergenic 20.0%
!!! TTGTAGTTTGTTGTTATAAT+TGG - chr8_2:22929821-22929840 Msa1240430:intron 20.0%
!! AGTTTATCAAAATAGCTTAT+GGG - chr8_2:22929908-22929927 Msa1240430:intron 20.0%
!! ATTTGAAAATAAAAGGAATG+CGG - chr8_2:22930142-22930161 Msa1240430:intron 20.0%
!! TAAAATCCGACAAAATAATT+TGG - chr8_2:22930195-22930214 Msa1240430:intron 20.0%
!!! TTGATGCAGATATATTTTAA+TGG - chr8_2:22930806-22930825 Msa1240430:CDS 20.0%
!!! GATTCTTTTTGTTATTGAAA+TGG - chr8_2:22931628-22931647 Msa1240430:intron 20.0%
!! ACATTATTCATTATACTTAC+GGG - chr8_2:22931928-22931947 Msa1240430:CDS 20.0%
!! AAATTATGGTCTTTGAATAA+TGG - chr8_2:22932000-22932019 Msa1240430:CDS 20.0%
!!! ATAGATTTCATTTTTCTTTC+TGG - chr8_2:22932148-22932167 Msa1240430:CDS 20.0%
!! AATATAGTTTCATAATACTC+AGG - chr8_2:22932181-22932200 Msa1240430:exon 20.0%
!! ATATAGTTTCATAATACTCA+GGG - chr8_2:22932182-22932201 Msa1240430:exon 20.0%
!! CACAATTAGATAATTATACA+TGG + chr8_2:22932487-22932506 None:intergenic 20.0%
!! AAAAATATCTTACTTGACAA+TGG + chr8_2:22933011-22933030 None:intergenic 20.0%
!!! GATATTCTTGAATGATATTT+TGG - chr8_2:22933563-22933582 Msa1240430:five_prime_UTR 20.0%
! AATGGAAAATTGAAAGGAAA+TGG + chr8_2:22928222-22928241 None:intergenic 25.0%
! ACAGAAAATGGAAAATTGAA+AGG + chr8_2:22928228-22928247 None:intergenic 25.0%
!! GAAATAGTTGATTGTTGATT+AGG - chr8_2:22928592-22928611 Msa1240430:intron 25.0%
! TCTTGGCATTATTTAATTGA+TGG - chr8_2:22928652-22928671 Msa1240430:intron 25.0%
!!! TTTTTGGCTGATTAATAGTT+TGG - chr8_2:22928687-22928706 Msa1240430:intron 25.0%
! TGCAATTCTTCAAAATATGA+AGG + chr8_2:22928763-22928782 None:intergenic 25.0%
! AACTATAAGAGAAAACTATC+AGG - chr8_2:22928904-22928923 Msa1240430:intron 25.0%
!! TGGTTTTTGATAGAACATTA+TGG - chr8_2:22928961-22928980 Msa1240430:intron 25.0%
! AAATTTAAATGGCTAGACTA+GGG + chr8_2:22929118-22929137 None:intergenic 25.0%
! AAAATTTAAATGGCTAGACT+AGG + chr8_2:22929119-22929138 None:intergenic 25.0%
! TTCCTTTGCTACATATAATT+TGG - chr8_2:22929381-22929400 Msa1240430:intron 25.0%
! TATACCAGTAATACATGATA+CGG + chr8_2:22929579-22929598 None:intergenic 25.0%
!! TTCACTAGAATTTTACATTC+TGG - chr8_2:22929637-22929656 Msa1240430:intron 25.0%
!!! TAGAATTTTACATTCTGGAA+AGG - chr8_2:22929642-22929661 Msa1240430:intron 25.0%
!! AAAAGTATAACTGAAAGTCA+TGG + chr8_2:22929746-22929765 None:intergenic 25.0%
!! TTGTTATAATTGGTCTGTTT+GGG - chr8_2:22929831-22929850 Msa1240430:intron 25.0%
! GAGTTTATCAAAATAGCTTA+TGG - chr8_2:22929907-22929926 Msa1240430:intron 25.0%
!! ATAAGCACTTTTATGATAAG+TGG - chr8_2:22930038-22930057 Msa1240430:intron 25.0%
!! ATGTTAAAATGGACTTTAAC+TGG + chr8_2:22930124-22930143 None:intergenic 25.0%
!!! GCAATACCAAATTATTTTGT+CGG + chr8_2:22930204-22930223 None:intergenic 25.0%
! GTATTGCTGAAATAATTCAA+GGG - chr8_2:22930217-22930236 Msa1240430:intron 25.0%
! AGATAGAAATAGTATAAGCT+CGG - chr8_2:22930364-22930383 Msa1240430:intron 25.0%
! TATTGCAAAGTTTAGTGTTA+AGG - chr8_2:22930387-22930406 Msa1240430:intron 25.0%
! AACTAAAACATAGATCACTT+AGG + chr8_2:22930752-22930771 None:intergenic 25.0%
! TTAGGCTTAATGTAGAAAAA+TGG + chr8_2:22930900-22930919 None:intergenic 25.0%
! GCAACAATAACTGATAAAAT+TGG + chr8_2:22931120-22931139 None:intergenic 25.0%
! CCTGTAATAATTTGAGAAAA+TGG + chr8_2:22931248-22931267 None:intergenic 25.0%
!! CCATTTTCTCAAATTATTAC+AGG - chr8_2:22931245-22931264 Msa1240430:intron 25.0%
! ATAGAAATATTCATCCATGT+AGG + chr8_2:22931521-22931540 None:intergenic 25.0%
!! TATTTCTATGAAGATGAAAG+AGG - chr8_2:22931532-22931551 Msa1240430:intron 25.0%
!! TGACATTGTGTTATGTATTT+TGG - chr8_2:22931668-22931687 Msa1240430:intron 25.0%
! TATAATGTTATCAGCTCAAA+TGG - chr8_2:22931815-22931834 Msa1240430:CDS 25.0%
! AGAAAAGTAAAATCAGAGTT+GGG + chr8_2:22931860-22931879 None:intergenic 25.0%
! AAGAAAAGTAAAATCAGAGT+TGG + chr8_2:22931861-22931880 None:intergenic 25.0%
!! AATGTACTTGTTGAAAGTTT+CGG + chr8_2:22931913-22931932 None:intergenic 25.0%
!! AATTTTTCCATTCAAGGATT+GGG + chr8_2:22931985-22932004 None:intergenic 25.0%
!! TAATTTTTCCATTCAAGGAT+TGG + chr8_2:22931986-22932005 None:intergenic 25.0%
! ATCCTTGAATGGAAAAATTA+TGG - chr8_2:22931986-22932005 Msa1240430:CDS 25.0%
!!! AAATCAAGAAGCTTTAAGAA+GGG + chr8_2:22932052-22932071 None:intergenic 25.0%
!!! AAAATCAAGAAGCTTTAAGA+AGG + chr8_2:22932053-22932072 None:intergenic 25.0%
! AATTATAGTATCCTAATGTC+AGG + chr8_2:22932540-22932559 None:intergenic 25.0%
! GAGGATAAAAGCAAAATTAT+GGG + chr8_2:22932649-22932668 None:intergenic 25.0%
! TGAGGATAAAAGCAAAATTA+TGG + chr8_2:22932650-22932669 None:intergenic 25.0%
!! TTGTTGAAGTTATGAGATTT+TGG - chr8_2:22933073-22933092 Msa1240430:intron 25.0%
!! GTTATGAGATTTTGGATAAA+AGG - chr8_2:22933081-22933100 Msa1240430:intron 25.0%
! CATTATAGCAAACAAATAAC+AGG + chr8_2:22933273-22933292 None:intergenic 25.0%
!!! TTGTTTGCTATAATGTTTTC+AGG - chr8_2:22933278-22933297 Msa1240430:intron 25.0%
! ATTTACAATGTATCCCAATT+GGG + chr8_2:22933345-22933364 None:intergenic 25.0%
! TATTTACAATGTATCCCAAT+TGG + chr8_2:22933346-22933365 None:intergenic 25.0%
! CTTTAAATACCATGATGAAT+AGG + chr8_2:22933380-22933399 None:intergenic 25.0%
!!! GAAGGATTATATCTTGTTTT+CGG - chr8_2:22933537-22933556 Msa1240430:five_prime_UTR 25.0%
!!! AAGGATTATATCTTGTTTTC+GGG - chr8_2:22933538-22933557 Msa1240430:five_prime_UTR 25.0%
GACAAAAGAGAAGTCTTAAT+GGG + chr8_2:22928100-22928119 None:intergenic 30.0%
AGACAAAAGAGAAGTCTTAA+TGG + chr8_2:22928101-22928120 None:intergenic 30.0%
CGATAAGGAAGAATGAAAAT+GGG + chr8_2:22928190-22928209 None:intergenic 30.0%
ACGATAAGGAAGAATGAAAA+TGG + chr8_2:22928191-22928210 None:intergenic 30.0%
AAATGGATGGAATTACGATA+AGG + chr8_2:22928205-22928224 None:intergenic 30.0%
GAAAATTGAAAGGAAATGGA+TGG + chr8_2:22928218-22928237 None:intergenic 30.0%
TTAAACCTGTTATTGCATCT+TGG - chr8_2:22928635-22928654 Msa1240430:intron 30.0%
ATAAGAGAAAACTATCAGGA+AGG - chr8_2:22928908-22928927 Msa1240430:intron 30.0%
!!! TTGATTTTTTGATGCACTGA+AGG - chr8_2:22929183-22929202 Msa1240430:intron 30.0%
!!! TGATTTTTTGATGCACTGAA+GGG - chr8_2:22929184-22929203 Msa1240430:intron 30.0%
TTGATATCTTTCTGTCTGAT+AGG - chr8_2:22929305-22929324 Msa1240430:intron 30.0%
ACCATTACTGATGATATGTT+TGG - chr8_2:22929348-22929367 Msa1240430:intron 30.0%
ACCAAACATATCATCAGTAA+TGG + chr8_2:22929352-22929371 None:intergenic 30.0%
CACCAAATTATATGTAGCAA+AGG + chr8_2:22929386-22929405 None:intergenic 30.0%
ATTACTGGTATAAGAAGCAA+AGG - chr8_2:22929587-22929606 Msa1240430:CDS 30.0%
! GTTGTTATAATTGGTCTGTT+TGG - chr8_2:22929830-22929849 Msa1240430:intron 30.0%
GGTATTGCTGAAATAATTCA+AGG - chr8_2:22930216-22930235 Msa1240430:intron 30.0%
ATGATATCAGATTGAGGAAA+GGG - chr8_2:22930240-22930259 Msa1240430:intron 30.0%
! GTCGTGTGCTTAAATTTTAA+AGG - chr8_2:22930296-22930315 Msa1240430:intron 30.0%
TTCTATCTTCGACAAACAAA+AGG + chr8_2:22930352-22930371 None:intergenic 30.0%
TTTAGGAAGTTACTGTGATA+AGG - chr8_2:22930472-22930491 Msa1240430:intron 30.0%
TTATCCGGAAAATCTATTGT+AGG - chr8_2:22930516-22930535 Msa1240430:CDS 30.0%
! GTTTCCTACAATAGATTTTC+CGG + chr8_2:22930523-22930542 None:intergenic 30.0%
ATAATAGGAGAGTCTTAACA+TGG + chr8_2:22930569-22930588 None:intergenic 30.0%
ATCGGATCAATATTTGTAAC+CGG + chr8_2:22930969-22930988 None:intergenic 30.0%
GTTACAAATATTGATCCGAT+TGG - chr8_2:22930969-22930988 Msa1240430:intron 30.0%
TTCTCCTGTAATTATCAGAA+AGG - chr8_2:22930995-22931014 Msa1240430:intron 30.0%
TCTACCTTTCTGATAATTAC+AGG + chr8_2:22931002-22931021 None:intergenic 30.0%
TTTATTCAACCATGAAGAAC+AGG + chr8_2:22931066-22931085 None:intergenic 30.0%
! CTTGAATCTTTTGAATATGC+TGG - chr8_2:22931403-22931422 Msa1240430:intron 30.0%
AAAGAATCTGCAACATATGT+CGG + chr8_2:22931616-22931635 None:intergenic 30.0%
!!! TGTTATGTATTTTGGAACCA+AGG - chr8_2:22931676-22931695 Msa1240430:intron 30.0%
! GACCATAATTTTTCCATTCA+AGG + chr8_2:22931991-22932010 None:intergenic 30.0%
! TTGATTTTGTTACTATGCCA+TGG - chr8_2:22932065-22932084 Msa1240430:CDS 30.0%
! GAATTGACTTACGGTAAAAT+TGG - chr8_2:22932206-22932225 Msa1240430:five_prime_UTR 30.0%
!!! GTTTTTTTCATTCCCTTACA+TGG - chr8_2:22932435-22932454 Msa1240430:intron 30.0%
ACATTTATCAAGCACATACA+TGG + chr8_2:22932580-22932599 None:intergenic 30.0%
AGAAATATTCTTGTGCATCA+TGG - chr8_2:22932831-22932850 Msa1240430:intron 30.0%
TTCAACAAGATGAACTAGAA+AGG + chr8_2:22933061-22933080 None:intergenic 30.0%
TTTACAATGTATCCCAATTG+GGG + chr8_2:22933344-22933363 None:intergenic 30.0%
! TTTTTCCTTCCTATTCATCA+TGG - chr8_2:22933368-22933387 Msa1240430:intron 30.0%
AAATACCATGATGAATAGGA+AGG + chr8_2:22933376-22933395 None:intergenic 30.0%
! GTATTAAAAGGTGTATAGTG+AGG + chr8_2:22933505-22933524 None:intergenic 30.0%
!!! AGGATTATATCTTGTTTTCG+GGG - chr8_2:22933539-22933558 Msa1240430:five_prime_UTR 30.0%
GAGAAGTCTTAATGGGAATA+AGG + chr8_2:22928093-22928112 None:intergenic 35.0%
AGAGTGTATTGTGAAAACGA+AGG + chr8_2:22928127-22928146 None:intergenic 35.0%
GAAAATGGGTGAATGGAAAA+TGG + chr8_2:22928176-22928195 None:intergenic 35.0%
GAAGAATGAAAATGGGTGAA+TGG + chr8_2:22928183-22928202 None:intergenic 35.0%
TAATGCCAAGATGCAATAAC+AGG + chr8_2:22928643-22928662 None:intergenic 35.0%
! GGACAGTTATTTAAAACCCA+GGG + chr8_2:22928713-22928732 None:intergenic 35.0%
! AGGACAGTTATTTAAAACCC+AGG + chr8_2:22928714-22928733 None:intergenic 35.0%
!!! TGGGTTTTAAATAACTGTCC+TGG - chr8_2:22928713-22928732 Msa1240430:intron 35.0%
TGAAGAATTGCAGTCAAATG+CGG - chr8_2:22928771-22928790 Msa1240430:intron 35.0%
GAAACTATCAAGTAGACTAG+TGG - chr8_2:22928829-22928848 Msa1240430:intron 35.0%
!! ACTAGTGGATTCTAGTAAGA+AGG - chr8_2:22928844-22928863 Msa1240430:intron 35.0%
!! CTAGTGGATTCTAGTAAGAA+GGG - chr8_2:22928845-22928864 Msa1240430:intron 35.0%
!! AATAGCCTTATCTCACTAAG+TGG + chr8_2:22929011-22929030 None:intergenic 35.0%
!! CTGATGATATGTTTGGTTCT+TGG - chr8_2:22929355-22929374 Msa1240430:intron 35.0%
GTGACAATGATAATCCACTA+TGG - chr8_2:22929403-22929422 Msa1240430:intron 35.0%
GATAATCCACTATGGATCAT+CGG - chr8_2:22929411-22929430 Msa1240430:intron 35.0%
AAAAAACAATCCACCATCCT+CGG + chr8_2:22929449-22929468 None:intergenic 35.0%
TTTGTGTTCTTCACATGTTC+AGG + chr8_2:22929490-22929509 None:intergenic 35.0%
AATGCCGTATCATGTATTAC+TGG - chr8_2:22929572-22929591 Msa1240430:CDS 35.0%
TAACTGAAAGTCATGGTAAG+CGG + chr8_2:22929739-22929758 None:intergenic 35.0%
! TATAATTGGTCTGTTTGGGT+TGG - chr8_2:22929835-22929854 Msa1240430:intron 35.0%
! AAAATGGACTTTAACTGGCA+TGG + chr8_2:22930119-22930138 None:intergenic 35.0%
! GGATTTTACTTCTTTCACCA+AGG + chr8_2:22930183-22930202 None:intergenic 35.0%
GATGATATCAGATTGAGGAA+AGG - chr8_2:22930239-22930258 Msa1240430:intron 35.0%
AGTTTAGTGTTAAGGTTTGC+AGG - chr8_2:22930395-22930414 Msa1240430:intron 35.0%
ACACATTGCTTAATCTTTGC+AGG - chr8_2:22930645-22930664 Msa1240430:CDS 35.0%
CACATTGCTTAATCTTTGCA+GGG - chr8_2:22930646-22930665 Msa1240430:CDS 35.0%
! TTTTCTCCAAATGCCAGATT+GGG + chr8_2:22930864-22930883 None:intergenic 35.0%
! ATTTTCTCCAAATGCCAGAT+TGG + chr8_2:22930865-22930884 None:intergenic 35.0%
TAGAAAAATGGAAAAGCAGC+TGG + chr8_2:22930888-22930907 None:intergenic 35.0%
!! TGTAAGGAAGTATTATCCTG+AGG - chr8_2:22930935-22930954 Msa1240430:intron 35.0%
AAGTATTATCCTGAGGAGAA+TGG - chr8_2:22930942-22930961 Msa1240430:intron 35.0%
ATTACAGGAGAATTGCCAAT+CGG + chr8_2:22930987-22931006 None:intergenic 35.0%
GGATTAATACCTGTTCTTCA+TGG - chr8_2:22931054-22931073 Msa1240430:intron 35.0%
GGTAAACCAGAACAATGTTA+AGG + chr8_2:22931099-22931118 None:intergenic 35.0%
GTTGTGTTGAAAGATCTCAA+TGG - chr8_2:22931344-22931363 Msa1240430:intron 35.0%
!!! GTGAATACTTTTAGCTCACA+CGG - chr8_2:22931444-22931463 Msa1240430:intron 35.0%
!!! TGTATTTTGGAACCAAGGTA+TGG - chr8_2:22931681-22931700 Msa1240430:intron 35.0%
AGTTGGGTATGCATAATAGT+TGG + chr8_2:22931844-22931863 None:intergenic 35.0%
TATTTCTCCCAATCCTTGAA+TGG - chr8_2:22931975-22931994 Msa1240430:CDS 35.0%
!! AGAAGCTTTAAGAAGGGAAA+AGG + chr8_2:22932046-22932065 None:intergenic 35.0%
AAATTAAGCTGTGTGTCTCA+TGG + chr8_2:22932391-22932410 None:intergenic 35.0%
! TTTTCATTCCCTTACATGGT+AGG - chr8_2:22932439-22932458 Msa1240430:intron 35.0%
! GCTTTTATCCTCATCTATTC+TGG - chr8_2:22932657-22932676 Msa1240430:intron 35.0%
TTTATCCTCATCTATTCTGG+TGG - chr8_2:22932660-22932679 Msa1240430:intron 35.0%
GAAACAACCTACAACATCTA+GGG + chr8_2:22932869-22932888 None:intergenic 35.0%
AGTCTGACAGTAGCTATATT+AGG + chr8_2:22932891-22932910 None:intergenic 35.0%
AGCAAATGATACCTCTCTAA+TGG - chr8_2:22932948-22932967 Msa1240430:intron 35.0%
TCTAATGGAGAGGAATTCTT+TGG - chr8_2:22932963-22932982 Msa1240430:intron 35.0%
TCTTGTAAAGATGGTGAATG+AGG - chr8_2:22933305-22933324 Msa1240430:intron 35.0%
!!! GTCAACACTTTTTCTGTAAC+TGG + chr8_2:22933414-22933433 None:intergenic 35.0%
! AAGGTGTATAGTGAGGTATT+TGG + chr8_2:22933498-22933517 None:intergenic 35.0%
!!! TATTTTGGCTCGTAACACAA+TGG - chr8_2:22933578-22933597 Msa1240430:five_prime_UTR 35.0%
CTCTCTGTCTGTTGAAACAA+AGG - chr8_2:22928022-22928041 Msa1240430:three_prime_UTR 40.0%
ATGGGTGAATGGAAAATGGA+AGG + chr8_2:22928172-22928191 None:intergenic 40.0%
CTGATTAATAGTTTGGCCCT+GGG - chr8_2:22928694-22928713 Msa1240430:intron 40.0%
AAGGGTAGTTAGATCACTAG+AGG - chr8_2:22928863-22928882 Msa1240430:intron 40.0%
AGTTAGATCACTAGAGGTAG+AGG - chr8_2:22928869-22928888 Msa1240430:intron 40.0%
ACTAGAGGTAGAGGAAAACT+TGG - chr8_2:22928878-22928897 Msa1240430:intron 40.0%
GAAAACTATCAGGAAGGATC+TGG - chr8_2:22928914-22928933 Msa1240430:intron 40.0%
GGATCTGGAGATTAATGAGT+TGG - chr8_2:22928929-22928948 Msa1240430:intron 40.0%
CGTATCCACTTAGTGAGATA+AGG - chr8_2:22929003-22929022 Msa1240430:intron 40.0%
AAAGTCCGCATTTGCAATCT+GGG + chr8_2:22929086-22929105 None:intergenic 40.0%
AAAAGTCCGCATTTGCAATC+TGG + chr8_2:22929087-22929106 None:intergenic 40.0%
GCTTGTTCTATCAAGAACTG+AGG - chr8_2:22929261-22929280 Msa1240430:CDS 40.0%
GTTCTATCAAGAACTGAGGA+AGG - chr8_2:22929265-22929284 Msa1240430:CDS 40.0%
AACTATCCGATGATCCATAG+TGG + chr8_2:22929420-22929439 None:intergenic 40.0%
GTTCAGGCATCTCAACAATA+GGG + chr8_2:22929474-22929493 None:intergenic 40.0%
TGTTCAGGCATCTCAACAAT+AGG + chr8_2:22929475-22929494 None:intergenic 40.0%
CTGATGCCATCTACAACAAA+TGG - chr8_2:22929548-22929567 Msa1240430:intron 40.0%
!! GCATTGCCATTTGTTGTAGA+TGG + chr8_2:22929557-22929576 None:intergenic 40.0%
ACTTAGCTGTTTGTCCAAAC+AGG - chr8_2:22930074-22930093 Msa1240430:intron 40.0%
CTTAGCTGTTTGTCCAAACA+GGG - chr8_2:22930075-22930094 Msa1240430:intron 40.0%
!! GCATGGAAGTATTCTAGACT+AGG + chr8_2:22930102-22930121 None:intergenic 40.0%
CAAGGGATGATATCAGATTG+AGG - chr8_2:22930234-22930253 Msa1240430:intron 40.0%
GTCCACAAAGACACATTATC+CGG - chr8_2:22930501-22930520 Msa1240430:intron 40.0%
TTCCGGATAATGTGTCTTTG+TGG + chr8_2:22930506-22930525 None:intergenic 40.0%
CAGAACAATGTTAAGGACAG+GGG + chr8_2:22931092-22931111 None:intergenic 40.0%
CCAGAACAATGTTAAGGACA+GGG + chr8_2:22931093-22931112 None:intergenic 40.0%
ACCAGAACAATGTTAAGGAC+AGG + chr8_2:22931094-22931113 None:intergenic 40.0%
GCATCGTCACTTCAGATTAA+AGG - chr8_2:22931156-22931175 Msa1240430:intron 40.0%
CACAAGTTTCAGTGTCATGT+CGG + chr8_2:22931208-22931227 None:intergenic 40.0%
ATCTGTGTATGTGTCATGTC+CGG - chr8_2:22931302-22931321 Msa1240430:intron 40.0%
!! GCTAAAAGTATTCACTTCCC+TGG + chr8_2:22931439-22931458 None:intergenic 40.0%
TTGCCAAAATTGCTCCTACA+TGG - chr8_2:22931504-22931523 Msa1240430:intron 40.0%
! CATCCATGTAGGAGCAATTT+TGG + chr8_2:22931510-22931529 None:intergenic 40.0%
TATGAAGATGAAAGAGGACC+CGG - chr8_2:22931538-22931557 Msa1240430:intron 40.0%
TGAAAGTTTCGGTATCCCAT+GGG + chr8_2:22931902-22931921 None:intergenic 40.0%
TTGAAAGTTTCGGTATCCCA+TGG + chr8_2:22931903-22931922 None:intergenic 40.0%
CCAGCTAAATCAAAGTTCCA+TGG + chr8_2:22932085-22932104 None:intergenic 40.0%
! CCATGGAACTTTGATTTAGC+TGG - chr8_2:22932082-22932101 Msa1240430:CDS 40.0%
ATGACATGACAAGTAGCTAG+TGG + chr8_2:22932130-22932149 None:intergenic 40.0%
! ACTCAGGGTGAATTGACTTA+CGG - chr8_2:22932197-22932216 Msa1240430:five_prime_UTR 40.0%
CTTACGGTAAAATTGGTGAG+TGG - chr8_2:22932213-22932232 Msa1240430:five_prime_UTR 40.0%
TGTAGACATACCACACTTTC+AGG + chr8_2:22932308-22932327 None:intergenic 40.0%
TCTTCTCACCTACCATGTAA+GGG + chr8_2:22932450-22932469 None:intergenic 40.0%
TTCTTCTCACCTACCATGTA+AGG + chr8_2:22932451-22932470 None:intergenic 40.0%
AAGCGAATCAAAGGACTGTT+TGG + chr8_2:22932605-22932624 None:intergenic 40.0%
TCTGGCTATAAGCGAATCAA+AGG + chr8_2:22932614-22932633 None:intergenic 40.0%
CTTACTTCCCTAGATGTTGT+AGG - chr8_2:22932859-22932878 Msa1240430:intron 40.0%
GGAAACAACCTACAACATCT+AGG + chr8_2:22932870-22932889 None:intergenic 40.0%
ATGATACCTCTCTAATGGAG+AGG - chr8_2:22932953-22932972 Msa1240430:intron 40.0%
AGAATTCCTCTCCATTAGAG+AGG + chr8_2:22932962-22932981 None:intergenic 40.0%
GACAATGGTCACTAACATCT+AGG + chr8_2:22932996-22933015 None:intergenic 40.0%
ATGAACTAGACAGCAACTGT+CGG + chr8_2:22933182-22933201 None:intergenic 40.0%
! TAATGCAATGCTTTTGCTGC+TGG + chr8_2:22933245-22933264 None:intergenic 40.0%
TCAGGTGACTCTTGTAAAGA+TGG - chr8_2:22933296-22933315 Msa1240430:intron 40.0%
TTCTGCTAACATCCCCAATT+GGG - chr8_2:22933329-22933348 Msa1240430:intron 40.0%
!! CAGAAAAAGTGTTGACATCG+AGG - chr8_2:22933418-22933437 Msa1240430:intron 40.0%
AGAGAGAGAGATTCTCCGAT+GGG + chr8_2:22927998-22928017 None:intergenic 45.0%
GCTGATTAATAGTTTGGCCC+TGG - chr8_2:22928693-22928712 Msa1240430:intron 45.0%
GCTTAATTGCGGTCACATTG+CGG - chr8_2:22928802-22928821 Msa1240430:intron 45.0%
TCTGTCTGATAGGAAGACCA+TGG - chr8_2:22929315-22929334 Msa1240430:intron 45.0%
ATCGGATAGTTTAGCTACCG+AGG - chr8_2:22929429-22929448 Msa1240430:intron 45.0%
GATAGTTTAGCTACCGAGGA+TGG - chr8_2:22929433-22929452 Msa1240430:intron 45.0%
GCGGTCAACGCAATATGAAA+CGG + chr8_2:22929526-22929545 None:intergenic 45.0%
GTTGTAGATGGCATCAGTTG+CGG + chr8_2:22929545-22929564 None:intergenic 45.0%
AAGAAGCAAAGGAGTCTACC+TGG - chr8_2:22929598-22929617 Msa1240430:CDS 45.0%
AGTCTACCTGGATCAGAGAT+GGG - chr8_2:22929610-22929629 Msa1240430:intron 45.0%
TGGAAAGGCTGACAACTTGA+TGG - chr8_2:22929657-22929676 Msa1240430:intron 45.0%
TTCTAGACTAGGACCCTGTT+TGG + chr8_2:22930091-22930110 None:intergenic 45.0%
! GGTTTTCGACTAGCATACCT+TGG - chr8_2:22930163-22930182 Msa1240430:intron 45.0%
! ACGTCGTTCTGAATAGACCA+TGG - chr8_2:22930671-22930690 Msa1240430:CDS 45.0%
! CGTCGTTCTGAATAGACCAT+GGG - chr8_2:22930672-22930691 Msa1240430:CDS 45.0%
! CTTTTCCAGCCACTGAACAA+AGG + chr8_2:22930698-22930717 None:intergenic 45.0%
CTTTGTTCAGTGGCTGGAAA+AGG - chr8_2:22930696-22930715 Msa1240430:intron 45.0%
CAAATGCCAGATTGGGAAGA+GGG + chr8_2:22930857-22930876 None:intergenic 45.0%
TTATCCTGAGGAGAATGGAC+CGG - chr8_2:22930947-22930966 Msa1240430:intron 45.0%
CCCTGTCCTTAACATTGTTC+TGG - chr8_2:22931090-22931109 Msa1240430:intron 45.0%
TGATGTGTCTGTGTCGTGTA+CGG - chr8_2:22931271-22931290 Msa1240430:intron 45.0%
GAACTATGAACCACAGACAC+CGG + chr8_2:22931324-22931343 None:intergenic 45.0%
!! TATGCTGGTTCGATAAGACC+AGG - chr8_2:22931418-22931437 Msa1240430:intron 45.0%
!! ATGCTGGTTCGATAAGACCA+GGG - chr8_2:22931419-22931438 Msa1240430:intron 45.0%
!!! TACTTTTAGCTCACACGGTG+AGG - chr8_2:22931449-22931468 Msa1240430:intron 45.0%
!!! ACTTTTAGCTCACACGGTGA+GGG - chr8_2:22931450-22931469 Msa1240430:intron 45.0%
! AGACCGACAAAGCTTTTGGA+TGG - chr8_2:22931561-22931580 Msa1240430:intron 45.0%
! GACCGACAAAGCTTTTGGAT+GGG - chr8_2:22931562-22931581 Msa1240430:intron 45.0%
! CACCCATCCAAAAGCTTTGT+CGG + chr8_2:22931567-22931586 None:intergenic 45.0%
GCAACAGCATAACCATACCT+TGG + chr8_2:22931696-22931715 None:intergenic 45.0%
AATATGTCTCACGCCATGCA+GGG + chr8_2:22931724-22931743 None:intergenic 45.0%
GCGAAAAGACTTCATGCTAC+AGG - chr8_2:22931746-22931765 Msa1240430:intron 45.0%
AAAGTTTCGGTATCCCATGG+GGG + chr8_2:22931900-22931919 None:intergenic 45.0%
GAAAGTTTCGGTATCCCATG+GGG + chr8_2:22931901-22931920 None:intergenic 45.0%
CGGGTGTGACTACAATATGA+AGG - chr8_2:22931947-22931966 Msa1240430:CDS 45.0%
GACAAAAGATCACATCTGCG+AGG - chr8_2:22932242-22932261 Msa1240430:five_prime_UTR 45.0%
AATGGCAAGTTTCTTGGTGG+TGG + chr8_2:22932269-22932288 None:intergenic 45.0%
! GGTAATGGCAAGTTTCTTGG+TGG + chr8_2:22932272-22932291 None:intergenic 45.0%
! GGAGGTAATGGCAAGTTTCT+TGG + chr8_2:22932275-22932294 None:intergenic 45.0%
TATGGGCATCTGAGAAGTTC+TGG + chr8_2:22932632-22932651 None:intergenic 45.0%
TACAGCCACCAGAATAGATG+AGG + chr8_2:22932668-22932687 None:intergenic 45.0%
CTATTCTGGTGGCTGTAGAA+CGG - chr8_2:22932671-22932690 Msa1240430:intron 45.0%
GTAGAACAATTGTCGAAGCC+CGG + chr8_2:22932773-22932792 None:intergenic 45.0%
CTTCTGCTAACATCCCCAAT+TGG - chr8_2:22933328-22933347 Msa1240430:intron 45.0%
!!! TTTAATTTGTAAAATAAAAA+GGG + chr8_2:22928503-22928522 None:intergenic 5.0%
!!! TTTTAATTTGTAAAATAAAA+AGG + chr8_2:22928504-22928523 None:intergenic 5.0%
GAGAGAGAGATTCTCCGATG+GGG + chr8_2:22927997-22928016 None:intergenic 50.0%
GAGAGAGAGAGATTCTCCGA+TGG + chr8_2:22927999-22928018 None:intergenic 50.0%
ACGCGACTACGACTATTACC+AGG + chr8_2:22928734-22928753 None:intergenic 50.0%
CGGCTGATGTGGCTTAATTG+CGG - chr8_2:22928791-22928810 Msa1240430:intron 50.0%
TAATGGTGAAGCTCGTGCCA+TGG + chr8_2:22929335-22929354 None:intergenic 50.0%
AGTTTAGCTACCGAGGATGG+TGG - chr8_2:22929436-22929455 Msa1240430:intron 50.0%
GAGTCTACCTGGATCAGAGA+TGG - chr8_2:22929609-22929628 Msa1240430:intron 50.0%
AATCCTCCCATCTCTGATCC+AGG + chr8_2:22929619-22929638 None:intergenic 50.0%
AGAGGATCAACGACGACAGT+AGG + chr8_2:22929691-22929710 None:intergenic 50.0%
TGTCGTCGTTGATCCTCTTC+CGG - chr8_2:22929693-22929712 Msa1240430:intron 50.0%
TCTTCCGGAAGGTCTAGACA+GGG - chr8_2:22929708-22929727 Msa1240430:intron 50.0%
GGGCGTACAAATACGTGATC+AGG + chr8_2:22930837-22930856 None:intergenic 50.0%
CCAAATGCCAGATTGGGAAG+AGG + chr8_2:22930858-22930877 None:intergenic 50.0%
CCTCTTCCCAATCTGGCATT+TGG - chr8_2:22930855-22930874 Msa1240430:intron 50.0%
!!! CTTTTAGCTCACACGGTGAG+GGG - chr8_2:22931451-22931470 Msa1240430:intron 50.0%
! CAAAAGCTTTGTCGGTCTCC+GGG + chr8_2:22931559-22931578 None:intergenic 50.0%
! CCAAAAGCTTTGTCGGTCTC+CGG + chr8_2:22931560-22931579 None:intergenic 50.0%
! CAAAGCTTTTGGATGGGTGC+TGG - chr8_2:22931568-22931587 Msa1240430:intron 50.0%
GAATATGTCTCACGCCATGC+AGG + chr8_2:22931725-22931744 None:intergenic 50.0%
! ATGTGACTTTTCAGCCCCCA+TGG - chr8_2:22931883-22931902 Msa1240430:CDS 50.0%
! TGTGACTTTTCAGCCCCCAT+GGG - chr8_2:22931884-22931903 Msa1240430:CDS 50.0%
AACTTGCCATTACCTCCTCC+AGG - chr8_2:22932278-22932297 Msa1240430:intron 50.0%
ACACTTTCAGGAACACCTGG+AGG + chr8_2:22932296-22932315 None:intergenic 50.0%
TCCAGGTGTTCCTGAAAGTG+TGG - chr8_2:22932295-22932314 Msa1240430:intron 50.0%
ACCACACTTTCAGGAACACC+TGG + chr8_2:22932299-22932318 None:intergenic 50.0%
CTAATGTCAGGCAGCACTAG+AGG + chr8_2:22932528-22932547 None:intergenic 50.0%
CTCTAGTGCTGCCTGACATT+AGG - chr8_2:22932526-22932545 Msa1240430:intron 50.0%
TATAGGTGGTAGGGTAGGGT+GGG - chr8_2:22932703-22932722 Msa1240430:intron 50.0%
! AAGATTGGCCGCAATCTGAG+CGG + chr8_2:22932734-22932753 None:intergenic 50.0%
! AACTGTCGGTTAAGCAGTGG+GGG + chr8_2:22933168-22933187 None:intergenic 50.0%
! CAACTGTCGGTTAAGCAGTG+GGG + chr8_2:22933169-22933188 None:intergenic 50.0%
! GCAACTGTCGGTTAAGCAGT+GGG + chr8_2:22933170-22933189 None:intergenic 50.0%
! AGCAACTGTCGGTTAAGCAG+TGG + chr8_2:22933171-22933190 None:intergenic 50.0%
AGATTCTCCGATGGGGACGA+CGG + chr8_2:22927990-22928009 None:intergenic 55.0%
GCAGTCAAATGCGGCTGATG+TGG - chr8_2:22928780-22928799 Msa1240430:intron 55.0%
TGCGGCCCAGATTGCAAATG+CGG - chr8_2:22929078-22929097 Msa1240430:intron 55.0%
CTACCTGGATCAGAGATGGG+AGG - chr8_2:22929613-22929632 Msa1240430:intron 55.0%
GTCGTTGATCCTCTTCCGGA+AGG - chr8_2:22929697-22929716 Msa1240430:intron 55.0%
CTGTCTAGACCTTCCGGAAG+AGG + chr8_2:22929709-22929728 None:intergenic 55.0%
CTCTTCCGGAAGGTCTAGAC+AGG - chr8_2:22929707-22929726 Msa1240430:intron 55.0%
CTCACCCTGTCTAGACCTTC+CGG + chr8_2:22929715-22929734 None:intergenic 55.0%
GACCATGGGCCTTTGTTCAG+TGG - chr8_2:22930686-22930705 Msa1240430:intron 55.0%
AGCCACTGAACAAAGGCCCA+TGG + chr8_2:22930691-22930710 None:intergenic 55.0%
ATGGGCCTTTGTTCAGTGGC+TGG - chr8_2:22930690-22930709 Msa1240430:intron 55.0%
TGTACGCCCTCTTCCCAATC+TGG - chr8_2:22930848-22930867 Msa1240430:intron 55.0%
GTAACCGGTCCATTCTCCTC+AGG + chr8_2:22930954-22930973 None:intergenic 55.0%
TCTGTGTCGTGTACGGTGTC+TGG - chr8_2:22931278-22931297 Msa1240430:intron 55.0%
TGTGTCATGTCCGGTGTCTG+TGG - chr8_2:22931311-22931330 Msa1240430:intron 55.0%
! CCGGAGACCGACAAAGCTTT+TGG - chr8_2:22931557-22931576 Msa1240430:intron 55.0%
GGAACACCTGGAGGAGGTAA+TGG + chr8_2:22932287-22932306 None:intergenic 55.0%
CTTTCAGGAACACCTGGAGG+AGG + chr8_2:22932293-22932312 None:intergenic 55.0%
TCTGGTGGCTGTAGAACGGA+CGG - chr8_2:22932675-22932694 Msa1240430:intron 55.0%
CCTACCCTACCACCTATAGG+CGG + chr8_2:22932701-22932720 None:intergenic 55.0%
CGCCTATAGGTGGTAGGGTA+GGG - chr8_2:22932699-22932718 Msa1240430:intron 55.0%
CACCCTACCCTACCACCTAT+AGG + chr8_2:22932704-22932723 None:intergenic 55.0%
CTATAGGTGGTAGGGTAGGG+TGG - chr8_2:22932702-22932721 Msa1240430:intron 55.0%
CTGCGCGCTGTTAGGAAGAT+TGG + chr8_2:22932749-22932768 None:intergenic 55.0%
! ACTGTCGGTTAAGCAGTGGG+GGG + chr8_2:22933167-22933186 None:intergenic 55.0%
CGGAAGGTCTAGACAGGGTG+AGG - chr8_2:22929713-22929732 Msa1240430:intron 60.0%
GGACGACACGTGTCAGACTC+TGG + chr8_2:22931187-22931206 None:intergenic 60.0%
GCTGTTGCATCTGCCCTGCA+TGG - chr8_2:22931708-22931727 Msa1240430:intron 60.0%
TAGAACGGACGGCCGCCTAT+AGG - chr8_2:22932686-22932705 Msa1240430:intron 60.0%
ACGGCCGCCTATAGGTGGTA+GGG - chr8_2:22932694-22932713 Msa1240430:intron 60.0%
CCGCCTATAGGTGGTAGGGT+AGG - chr8_2:22932698-22932717 Msa1240430:intron 60.0%
GGGTGGTACCGCTCAGATTG+CGG - chr8_2:22932723-22932742 Msa1240430:intron 60.0%
CTTCCTAACAGCGCGCAGAC+CGG - chr8_2:22932751-22932770 Msa1240430:intron 60.0%
TTCCTAACAGCGCGCAGACC+GGG - chr8_2:22932752-22932771 Msa1240430:intron 60.0%
TGGGGACGACGGAGGGAACA+CGG + chr8_2:22927979-22927998 None:intergenic 65.0%
GTTCCCTCCGTCGTCCCCAT+CGG - chr8_2:22927980-22927999 Msa1240430:three_prime_UTR 65.0%
TCTCCGATGGGGACGACGGA+GGG + chr8_2:22927986-22928005 None:intergenic 65.0%
TTCTCCGATGGGGACGACGG+AGG + chr8_2:22927987-22928006 None:intergenic 65.0%
AACGGACGGCCGCCTATAGG+TGG - chr8_2:22932689-22932708 Msa1240430:intron 65.0%
GACGGCCGCCTATAGGTGGT+AGG - chr8_2:22932693-22932712 Msa1240430:intron 65.0%
AGGTGGTAGGGTAGGGTGGG+TGG - chr8_2:22932706-22932725 Msa1240430:intron 65.0%
GGACGACGGAGGGAACACGG+CGG + chr8_2:22927976-22927995 None:intergenic 70.0%
AGCCCGGTCTGCGCGCTGTT+AGG + chr8_2:22932757-22932776 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 22927916 22933602 22927916 ID=Msa1240430;Name=Msa1240430
chr8_2 mRNA 22927916 22933602 22927916 ID=Msa1240430-mRNA-1;Parent=Msa1240430;Name=Msa1240430-mRNA-1;_AED=0.08;_eAED=0.08;_QI=213|1|1|1|0.87|0.77|9|240|360
chr8_2 exon 22927916 22928218 22927916 ID=Msa1240430-mRNA-1:exon:8205;Parent=Msa1240430-mRNA-1
chr8_2 exon 22929202 22929315 22929202 ID=Msa1240430-mRNA-1:exon:8204;Parent=Msa1240430-mRNA-1
chr8_2 exon 22929550 22929621 22929550 ID=Msa1240430-mRNA-1:exon:8203;Parent=Msa1240430-mRNA-1
chr8_2 exon 22929751 22929820 22929751 ID=Msa1240430-mRNA-1:exon:8202;Parent=Msa1240430-mRNA-1
chr8_2 exon 22929924 22930021 22929924 ID=Msa1240430-mRNA-1:exon:8201;Parent=Msa1240430-mRNA-1
chr8_2 exon 22930502 22930703 22930502 ID=Msa1240430-mRNA-1:exon:8200;Parent=Msa1240430-mRNA-1
chr8_2 exon 22930784 22930851 22930784 ID=Msa1240430-mRNA-1:exon:8199;Parent=Msa1240430-mRNA-1
chr8_2 exon 22931789 22932269 22931789 ID=Msa1240430-mRNA-1:exon:8198;Parent=Msa1240430-mRNA-1
chr8_2 exon 22933475 22933602 22933475 ID=Msa1240430-mRNA-1:exon:8197;Parent=Msa1240430-mRNA-1
chr8_2 five_prime_UTR 22933475 22933602 22933475 ID=Msa1240430-mRNA-1:five_prime_utr;Parent=Msa1240430-mRNA-1
chr8_2 five_prime_UTR 22932185 22932269 22932185 ID=Msa1240430-mRNA-1:five_prime_utr;Parent=Msa1240430-mRNA-1
chr8_2 CDS 22931789 22932184 22931789 ID=Msa1240430-mRNA-1:cds;Parent=Msa1240430-mRNA-1
chr8_2 CDS 22930784 22930851 22930784 ID=Msa1240430-mRNA-1:cds;Parent=Msa1240430-mRNA-1
chr8_2 CDS 22930502 22930703 22930502 ID=Msa1240430-mRNA-1:cds;Parent=Msa1240430-mRNA-1
chr8_2 CDS 22929924 22930021 22929924 ID=Msa1240430-mRNA-1:cds;Parent=Msa1240430-mRNA-1
chr8_2 CDS 22929751 22929820 22929751 ID=Msa1240430-mRNA-1:cds;Parent=Msa1240430-mRNA-1
chr8_2 CDS 22929550 22929621 22929550 ID=Msa1240430-mRNA-1:cds;Parent=Msa1240430-mRNA-1
chr8_2 CDS 22929202 22929315 22929202 ID=Msa1240430-mRNA-1:cds;Parent=Msa1240430-mRNA-1
chr8_2 CDS 22928156 22928218 22928156 ID=Msa1240430-mRNA-1:cds;Parent=Msa1240430-mRNA-1
chr8_2 three_prime_UTR 22927916 22928155 22927916 ID=Msa1240430-mRNA-1:three_prime_utr;Parent=Msa1240430-mRNA-1
Gene Sequence

>Msa1240430

ATGGCACGAGCTTCACCATTACTGATGATATGTTTGGTTCTTGGTTCTTCCTTTGCTACATATAATTTGGTGACAATGATAATCCACTATGGATCATCGGATAGTTTAGCTACCGAGGATGGTGGATTGTTTTTTGACCCTATTGTTGAGATGCCTGAACATGTGAAGAACACAAAAACATCTAAAGCACCGTTTCATATTGCGTTGACCGCAACTGATGCCATCTACAACAAATGGCAATGCCGTATCATGTATTACTGGTATAAGAAGCAAAGGAGTCTACCTGGATCAGAGATGGGAGGATTCACTAGAATTTTACATTCTGGAAAGGCTGACAACTTGATGGATGAAATTCCTACTGTCGTCGTTGATCCTCTTCCGGAAGGTCTAGACAGGGGATACGTCGTTCTGAATAGACCATGGGCCTTTGTTCAGTGGCTGGAAAAGGCTAAAATAGAAGAAGAATATATTTTAATGGCAGAACCTGATCACGTATTTGTACGCCCTCTTCCCAATCTGGCATTTGGAGAAAATCCAGCTGCTTTTCCATTTTTCTACATTAAGCCTAAAGAAAATGAAAAAATTGTAAGGAAGTATTATCCTGAGGAGAATGGACCGGTTACAAATATTGATCCGATTGGCAATTCTCCTGTAATTATCAGAAAGGATTTGATTGCCAAAATTGCTCCTACATGGATGAATATTTCTATGAAGATGAAAGAGGACCCGGAGACCGACAAAGCTTTTGGATGGGTGCTGGAAATGTATGGTTATGCTGTTGCATCTGCCCTGCATGGCGTGAGACATATTCTGCGAAAAGACTTCATGCTACAGCCCCCATGGGATACCGAAACTTTCAACAAGTACATTATTCATTATACTTACGGGTGTGACTACAATATGAAGGGTGAATTGACTTACGGTAAAATTGGTGAGTGGAGATTCGACAAAAGATCACATCTGCGAGGACCACCACCAAGAAACTTGCCATTACCTCCTCCAGGTGTTCCTGAAAGTGTGGTGACTCTTGTAAAGATGGTGAATGAGGCTTCTGCTAACATCCCCAATTGGGATACATTGTAA

Protein sequence

>Msa1240430

MARASPLLMICLVLGSSFATYNLVTMIIHYGSSDSLATEDGGLFFDPIVEMPEHVKNTKTSKAPFHIALTATDAIYNKWQCRIMYYWYKKQRSLPGSEMGGFTRILHSGKADNLMDEIPTVVVDPLPEGLDRGYVVLNRPWAFVQWLEKAKIEEEYILMAEPDHVFVRPLPNLAFGENPAAFPFFYIKPKENEKIVRKYYPEENGPVTNIDPIGNSPVIIRKDLIAKIAPTWMNISMKMKEDPETDKAFGWVLEMYGYAVASALHGVRHILRKDFMLQPPWDTETFNKYIIHYTYGCDYNMKGELTYGKIGEWRFDKRSHLRGPPPRNLPLPPPGVPESVVTLVKMVNEASANIPNWDTL*