Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1240430 | XP_003627860.1 | 98.611 | 360 | 5 | 0 | 1 | 360 | 1 | 360 | 0.0 | 740 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1240430 | sp|G7LG31|RDN2_MEDTR | 98.611 | 360 | 5 | 0 | 1 | 360 | 1 | 360 | 0.0 | 740 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1240430 | A0A072TQJ1 | 98.333 | 360 | 5 | 1 | 1 | 360 | 1 | 359 | 0.0 | 734 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0053480 | Msa1240430 | -0.811201 | 7.880782e-51 | -8.615850e-47 |
Msa1240430 | Msa1457450 | -0.822298 | 2.552680e-53 | -8.615850e-47 |
Msa0363460 | Msa1240430 | -0.803524 | 3.345783e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1240430 | MtrunA17_Chr8g0353191 | 98.611 | 360 | 5 | 0 | 1 | 360 | 1 | 360 | 0.0 | 740 |
Msa1240430 | MtrunA17_Chr5g0441831 | 70.833 | 360 | 93 | 2 | 1 | 360 | 7 | 354 | 0.0 | 548 |
Msa1240430 | MtrunA17_Chr1g0149621 | 62.772 | 368 | 120 | 5 | 1 | 359 | 1 | 360 | 3.07e-169 | 476 |
Msa1240430 | MtrunA17_Chr7g0228921 | 24.908 | 273 | 159 | 13 | 66 | 317 | 395 | 642 | 1.02e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1240430 | AT5G13500.2 | 76.111 | 360 | 84 | 1 | 1 | 360 | 1 | 358 | 0.0 | 576 |
Msa1240430 | AT5G13500.3 | 76.111 | 360 | 84 | 1 | 1 | 360 | 1 | 358 | 0.0 | 576 |
Msa1240430 | AT5G13500.1 | 76.111 | 360 | 84 | 1 | 1 | 360 | 1 | 358 | 0.0 | 576 |
Msa1240430 | AT2G25260.1 | 70.530 | 302 | 89 | 0 | 58 | 359 | 57 | 358 | 2.85e-169 | 476 |
Msa1240430 | AT5G25265.1 | 69.497 | 318 | 92 | 2 | 47 | 359 | 49 | 366 | 7.79e-169 | 475 |
Msa1240430 | AT3G01720.1 | 23.051 | 295 | 187 | 10 | 41 | 317 | 370 | 642 | 1.16e-11 | 66.6 |
Find 116 sgRNAs with CRISPR-Local
Find 368 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATATTCTTGAATGATATTT+TGG | 0.156597 | 8_2:-22927933 | Msa1240430:three_prime_UTR |
CATCCATGTAGGAGCAATTT+TGG | 0.157802 | 8_2:+22929989 | None:intergenic |
TTCCTTTGCTACATATAATT+TGG | 0.195551 | 8_2:-22932115 | Msa1240430:CDS |
TGTAGACATACCACACTTTC+AGG | 0.233658 | 8_2:+22929191 | None:intergenic |
ATTTAAATAGTTGTATTAAA+AGG | 0.253618 | 8_2:+22927982 | None:intergenic |
TCTACCTTTCTGATAATTAC+AGG | 0.273833 | 8_2:+22930497 | None:intergenic |
TTTGTGTTCTTCACATGTTC+AGG | 0.290321 | 8_2:+22932009 | None:intergenic |
CCGGAGACCGACAAAGCTTT+TGG | 0.293985 | 8_2:-22929939 | Msa1240430:CDS |
CTGATGATATGTTTGGTTCT+TGG | 0.302314 | 8_2:-22932141 | Msa1240430:CDS |
GAATTGACTTACGGTAAAAT+TGG | 0.313648 | 8_2:-22929290 | Msa1240430:CDS |
GCATTGCCATTTGTTGTAGA+TGG | 0.329461 | 8_2:+22931942 | None:intergenic |
TACATTATTCATTATACTTA+CGG | 0.354634 | 8_2:-22929569 | Msa1240430:CDS |
ACCATTACTGATGATATGTT+TGG | 0.354825 | 8_2:-22932148 | Msa1240430:CDS |
TGTTCAGGCATCTCAACAAT+AGG | 0.356782 | 8_2:+22932024 | None:intergenic |
GGAGGTAATGGCAAGTTTCT+TGG | 0.358268 | 8_2:+22929224 | None:intergenic |
TATTTACAATGTATCCCAAT+TGG | 0.363051 | 8_2:+22928153 | None:intergenic |
ATTTACAATGTATCCCAATT+GGG | 0.366685 | 8_2:+22928154 | None:intergenic |
TTGATATCTTTCTGTCTGAT+AGG | 0.369093 | 8_2:-22932191 | Msa1240430:five_prime_UTR |
TGTACGCCCTCTTCCCAATC+TGG | 0.371070 | 8_2:-22930648 | Msa1240430:CDS |
ACATTATTCATTATACTTAC+GGG | 0.376342 | 8_2:-22929568 | Msa1240430:CDS |
CCAAAAGCTTTGTCGGTCTC+CGG | 0.381162 | 8_2:+22929939 | None:intergenic |
CCTCTTCCCAATCTGGCATT+TGG | 0.385015 | 8_2:-22930641 | Msa1240430:CDS |
AATGTACTTGTTGAAAGTTT+CGG | 0.395815 | 8_2:+22929586 | None:intergenic |
CTTTAAATACCATGATGAAT+AGG | 0.412610 | 8_2:+22928119 | None:intergenic |
CTCACCCTGTCTAGACCTTC+CGG | 0.417765 | 8_2:+22931784 | None:intergenic |
TGGAAAGGCTGACAACTTGA+TGG | 0.418539 | 8_2:-22931839 | Msa1240430:CDS |
TAATACAACTATTTAAATGA+AGG | 0.423035 | 8_2:-22927977 | Msa1240430:three_prime_UTR |
CACCCATCCAAAAGCTTTGT+CGG | 0.426464 | 8_2:+22929932 | None:intergenic |
CTTCTGCTAACATCCCCAAT+TGG | 0.429086 | 8_2:-22928168 | Msa1240430:CDS |
AAGGTGTATAGTGAGGTATT+TGG | 0.429135 | 8_2:+22928001 | None:intergenic |
TCAGGTGACTCTTGTAAAGA+TGG | 0.438160 | 8_2:-22928200 | Msa1240430:intron |
TGTCGTCGTTGATCCTCTTC+CGG | 0.440206 | 8_2:-22931803 | Msa1240430:CDS |
CTTTGTTCAGTGGCTGGAAA+AGG | 0.444264 | 8_2:-22930800 | Msa1240430:CDS |
GTGACAATGATAATCCACTA+TGG | 0.451326 | 8_2:-22932093 | Msa1240430:CDS |
CTGATGCCATCTACAACAAA+TGG | 0.456001 | 8_2:-22931948 | Msa1240430:CDS |
TTCTGCTAACATCCCCAATT+GGG | 0.459913 | 8_2:-22928167 | Msa1240430:CDS |
ATGGGCCTTTGTTCAGTGGC+TGG | 0.460296 | 8_2:-22930806 | Msa1240430:CDS |
GCGAAAAGACTTCATGCTAC+AGG | 0.466953 | 8_2:-22929750 | Msa1240430:intron |
GGAACACCTGGAGGAGGTAA+TGG | 0.470362 | 8_2:+22929212 | None:intergenic |
ATCGGATCAATATTTGTAAC+CGG | 0.473029 | 8_2:+22930530 | None:intergenic |
CTCTTCCGGAAGGTCTAGAC+AGG | 0.482298 | 8_2:-22931789 | Msa1240430:CDS |
TTGAAAGTTTCGGTATCCCA+TGG | 0.484134 | 8_2:+22929596 | None:intergenic |
AATGGCAAGTTTCTTGGTGG+TGG | 0.485716 | 8_2:+22929230 | None:intergenic |
TTGCCAAAATTGCTCCTACA+TGG | 0.492892 | 8_2:-22929992 | Msa1240430:CDS |
CCAAATGCCAGATTGGGAAG+AGG | 0.493455 | 8_2:+22930641 | None:intergenic |
GAATATGTCTCACGCCATGC+AGG | 0.497143 | 8_2:+22929774 | None:intergenic |
CTGTCTAGACCTTCCGGAAG+AGG | 0.500411 | 8_2:+22931790 | None:intergenic |
CAAAAGCTTTGTCGGTCTCC+GGG | 0.502506 | 8_2:+22929940 | None:intergenic |
CTCTCTGTCTGTTGAAACAA+AGG | 0.505749 | 8_2:-22933474 | Msa1240430:intron |
GTAACCGGTCCATTCTCCTC+AGG | 0.508925 | 8_2:+22930545 | None:intergenic |
TGAAAGTTTCGGTATCCCAT+GGG | 0.514546 | 8_2:+22929597 | None:intergenic |
AAGTATTATCCTGAGGAGAA+TGG | 0.515266 | 8_2:-22930554 | Msa1240430:CDS |
GTTCAGGCATCTCAACAATA+GGG | 0.522658 | 8_2:+22932025 | None:intergenic |
AATCCTCCCATCTCTGATCC+AGG | 0.523340 | 8_2:+22931880 | None:intergenic |
TGGGGACGACGGAGGGAACA+CGG | 0.531083 | 8_2:+22933520 | None:intergenic |
GAGTCTACCTGGATCAGAGA+TGG | 0.533196 | 8_2:-22931887 | Msa1240430:CDS |
TTCTCCTGTAATTATCAGAA+AGG | 0.533563 | 8_2:-22930501 | Msa1240430:intron |
AGAGGATCAACGACGACAGT+AGG | 0.536647 | 8_2:+22931808 | None:intergenic |
AACTATCCGATGATCCATAG+TGG | 0.537106 | 8_2:+22932079 | None:intergenic |
GTTCCCTCCGTCGTCCCCAT+CGG | 0.539278 | 8_2:-22933516 | Msa1240430:five_prime_UTR |
AATGCCGTATCATGTATTAC+TGG | 0.539444 | 8_2:-22931924 | Msa1240430:CDS |
AAGAAGCAAAGGAGTCTACC+TGG | 0.540779 | 8_2:-22931898 | Msa1240430:CDS |
GACCATGGGCCTTTGTTCAG+TGG | 0.540787 | 8_2:-22930810 | Msa1240430:CDS |
AACTTGCCATTACCTCCTCC+AGG | 0.543731 | 8_2:-22929218 | Msa1240430:CDS |
CACCAAATTATATGTAGCAA+AGG | 0.545736 | 8_2:+22932113 | None:intergenic |
GTTACAAATATTGATCCGAT+TGG | 0.548705 | 8_2:-22930527 | Msa1240430:CDS |
TATACCAGTAATACATGATA+CGG | 0.549976 | 8_2:+22931920 | None:intergenic |
ACCAAACATATCATCAGTAA+TGG | 0.550380 | 8_2:+22932147 | None:intergenic |
AGAGAGAGAGATTCTCCGAT+GGG | 0.551715 | 8_2:+22933501 | None:intergenic |
TCTCCGATGGGGACGACGGA+GGG | 0.553306 | 8_2:+22933513 | None:intergenic |
GTCGTTGATCCTCTTCCGGA+AGG | 0.555563 | 8_2:-22931799 | Msa1240430:CDS |
CAAATGCCAGATTGGGAAGA+GGG | 0.557171 | 8_2:+22930642 | None:intergenic |
ACCACACTTTCAGGAACACC+TGG | 0.557951 | 8_2:+22929200 | None:intergenic |
ACTCAGGGTGAATTGACTTA+CGG | 0.559352 | 8_2:-22929299 | Msa1240430:intron |
TATTTCTATGAAGATGAAAG+AGG | 0.560544 | 8_2:-22929964 | Msa1240430:CDS |
GCTGTTGCATCTGCCCTGCA+TGG | 0.561601 | 8_2:-22929788 | Msa1240430:CDS |
AGATTCTCCGATGGGGACGA+CGG | 0.562487 | 8_2:+22933509 | None:intergenic |
TCCAGGTGTTCCTGAAAGTG+TGG | 0.563076 | 8_2:-22929201 | Msa1240430:intron |
AAATACCATGATGAATAGGA+AGG | 0.571694 | 8_2:+22928123 | None:intergenic |
TTTACAATGTATCCCAATTG+GGG | 0.573299 | 8_2:+22928155 | None:intergenic |
GATAATCCACTATGGATCAT+CGG | 0.574800 | 8_2:-22932085 | Msa1240430:CDS |
TATGAAGATGAAAGAGGACC+CGG | 0.576291 | 8_2:-22929958 | Msa1240430:CDS |
GGTAATGGCAAGTTTCTTGG+TGG | 0.577952 | 8_2:+22929227 | None:intergenic |
ATTACAGGAGAATTGCCAAT+CGG | 0.588392 | 8_2:+22930512 | None:intergenic |
GTTCTATCAAGAACTGAGGA+AGG | 0.590370 | 8_2:-22932231 | Msa1240430:five_prime_UTR |
AGTCTACCTGGATCAGAGAT+GGG | 0.590857 | 8_2:-22931886 | Msa1240430:CDS |
TCTTGTAAAGATGGTGAATG+AGG | 0.590924 | 8_2:-22928191 | Msa1240430:CDS |
GATAGTTTAGCTACCGAGGA+TGG | 0.594389 | 8_2:-22932063 | Msa1240430:CDS |
CGGGTGTGACTACAATATGA+AGG | 0.595934 | 8_2:-22929549 | Msa1240430:intron |
ATTACTGGTATAAGAAGCAA+AGG | 0.598311 | 8_2:-22931909 | Msa1240430:CDS |
GCGGTCAACGCAATATGAAA+CGG | 0.598357 | 8_2:+22931973 | None:intergenic |
AGTTTAGCTACCGAGGATGG+TGG | 0.599053 | 8_2:-22932060 | Msa1240430:CDS |
TAATGGTGAAGCTCGTGCCA+TGG | 0.610525 | 8_2:+22932164 | None:intergenic |
CTTTCAGGAACACCTGGAGG+AGG | 0.611273 | 8_2:+22929206 | None:intergenic |
TTCTCCGATGGGGACGACGG+AGG | 0.613605 | 8_2:+22933512 | None:intergenic |
GTTGTAGATGGCATCAGTTG+CGG | 0.614966 | 8_2:+22931954 | None:intergenic |
GAAAGTTTCGGTATCCCATG+GGG | 0.618074 | 8_2:+22929598 | None:intergenic |
TTATCCTGAGGAGAATGGAC+CGG | 0.623990 | 8_2:-22930549 | Msa1240430:CDS |
CGTCGTTCTGAATAGACCAT+GGG | 0.624386 | 8_2:-22930824 | Msa1240430:CDS |
AGCCACTGAACAAAGGCCCA+TGG | 0.626962 | 8_2:+22930808 | None:intergenic |
AATATGTCTCACGCCATGCA+GGG | 0.632298 | 8_2:+22929775 | None:intergenic |
ATCGGATAGTTTAGCTACCG+AGG | 0.633568 | 8_2:-22932067 | Msa1240430:CDS |
GTATTAAAAGGTGTATAGTG+AGG | 0.636150 | 8_2:+22927994 | None:intergenic |
ACGTCGTTCTGAATAGACCA+TGG | 0.640320 | 8_2:-22930825 | Msa1240430:CDS |
ATAGAAATATTCATCCATGT+AGG | 0.650200 | 8_2:+22929978 | None:intergenic |
CTTACGGTAAAATTGGTGAG+TGG | 0.653033 | 8_2:-22929283 | Msa1240430:CDS |
AAAGTTTCGGTATCCCATGG+GGG | 0.674004 | 8_2:+22929599 | None:intergenic |
CTACCTGGATCAGAGATGGG+AGG | 0.675794 | 8_2:-22931883 | Msa1240430:CDS |
GCTTGTTCTATCAAGAACTG+AGG | 0.681392 | 8_2:-22932235 | Msa1240430:five_prime_UTR |
GAGAGAGAGATTCTCCGATG+GGG | 0.686852 | 8_2:+22933502 | None:intergenic |
TGTAAGGAAGTATTATCCTG+AGG | 0.689724 | 8_2:-22930561 | Msa1240430:CDS |
TCTGTCTGATAGGAAGACCA+TGG | 0.702643 | 8_2:-22932181 | Msa1240430:exon |
ACACTTTCAGGAACACCTGG+AGG | 0.715454 | 8_2:+22929203 | None:intergenic |
TCTTCCGGAAGGTCTAGACA+GGG | 0.732437 | 8_2:-22931788 | Msa1240430:intron |
GGACGACGGAGGGAACACGG+CGG | 0.739182 | 8_2:+22933523 | None:intergenic |
GACAAAAGATCACATCTGCG+AGG | 0.743493 | 8_2:-22929254 | Msa1240430:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTATTTTCAAATGTTAAAA+TGG | + | chr8_2:22930135-22930154 | None:intergenic | 10.0% |
!!! | TTTTAACATTTGAAAATAAA+AGG | - | chr8_2:22930135-22930154 | Msa1240430:intron | 10.0% |
!!! | AAATACATTTTATAAATGAT+TGG | + | chr8_2:22930451-22930470 | None:intergenic | 10.0% |
!! | TTTATAAAATGTATTTGTTT+AGG | - | chr8_2:22930455-22930474 | Msa1240430:intron | 10.0% |
!! | ATTTAAATAGTTGTATTAAA+AGG | + | chr8_2:22933517-22933536 | None:intergenic | 10.0% |
!!! | TTTAATTGTTTTTAGCTAAT+AGG | + | chr8_2:22927945-22927964 | None:intergenic | 15.0% |
!! | ATACAAATTAAAACAGAAAA+TGG | + | chr8_2:22928240-22928259 | None:intergenic | 15.0% |
!!! | ATGGATTTATTTCATTTTTT+TGG | - | chr8_2:22928671-22928690 | Msa1240430:intron | 15.0% |
!!! | AAATATTTTGTGTATCAATT+TGG | - | chr8_2:22930421-22930440 | Msa1240430:intron | 15.0% |
!! | TAAATCAATCTATCAATAAT+AGG | + | chr8_2:22930584-22930603 | None:intergenic | 15.0% |
!! | ATTTAAATTGTATTTACTGA+TGG | + | chr8_2:22930617-22930636 | None:intergenic | 15.0% |
!!! | ACAATTTTTTCATTTTCTTT+AGG | + | chr8_2:22930918-22930937 | None:intergenic | 15.0% |
!! | AAGAAAATGAAAAAATTGTA+AGG | - | chr8_2:22930919-22930938 | Msa1240430:intron | 15.0% |
!! | AAACTTCTATTTAATTGAAT+TGG | - | chr8_2:22931033-22931052 | Msa1240430:intron | 15.0% |
!!! | GCATATTTTTTATTTTTTTC+AGG | - | chr8_2:22931475-22931494 | Msa1240430:intron | 15.0% |
!! | TACATTATTCATTATACTTA+CGG | - | chr8_2:22931927-22931946 | Msa1240430:CDS | 15.0% |
!! | TTTACGAAATTTATCTTATT+AGG | - | chr8_2:22932341-22932360 | Msa1240430:intron | 15.0% |
!! | ACAATTAGATAATTATACAT+GGG | + | chr8_2:22932486-22932505 | None:intergenic | 15.0% |
!! | ATAATTGTATAGTATATAGA+TGG | - | chr8_2:22933125-22933144 | Msa1240430:intron | 15.0% |
!! | TAATTGTATAGTATATAGAT+GGG | - | chr8_2:22933126-22933145 | Msa1240430:intron | 15.0% |
!! | TAATACAACTATTTAAATGA+AGG | - | chr8_2:22933519-22933538 | Msa1240430:five_prime_UTR | 15.0% |
!! | AAGATTCTATTCTTAATGTT+TGG | - | chr8_2:22928395-22928414 | Msa1240430:intron | 20.0% |
!! | AAGAATGATTAACACTTTAT+AGG | - | chr8_2:22928553-22928572 | Msa1240430:intron | 20.0% |
!!! | TAATGAGTTGGATAAAAATA+TGG | - | chr8_2:22928941-22928960 | Msa1240430:intron | 20.0% |
!! | AATAAGAAACAGTTATATTG+CGG | - | chr8_2:22929060-22929079 | Msa1240430:intron | 20.0% |
!! | TGCTAGAATCAAAATTTAAA+TGG | + | chr8_2:22929129-22929148 | None:intergenic | 20.0% |
!! | ATACTATTAATTCAATAAGC+TGG | + | chr8_2:22929802-22929821 | None:intergenic | 20.0% |
!!! | TTGTAGTTTGTTGTTATAAT+TGG | - | chr8_2:22929821-22929840 | Msa1240430:intron | 20.0% |
!! | AGTTTATCAAAATAGCTTAT+GGG | - | chr8_2:22929908-22929927 | Msa1240430:intron | 20.0% |
!! | ATTTGAAAATAAAAGGAATG+CGG | - | chr8_2:22930142-22930161 | Msa1240430:intron | 20.0% |
!! | TAAAATCCGACAAAATAATT+TGG | - | chr8_2:22930195-22930214 | Msa1240430:intron | 20.0% |
!!! | TTGATGCAGATATATTTTAA+TGG | - | chr8_2:22930806-22930825 | Msa1240430:CDS | 20.0% |
!!! | GATTCTTTTTGTTATTGAAA+TGG | - | chr8_2:22931628-22931647 | Msa1240430:intron | 20.0% |
!! | ACATTATTCATTATACTTAC+GGG | - | chr8_2:22931928-22931947 | Msa1240430:CDS | 20.0% |
!! | AAATTATGGTCTTTGAATAA+TGG | - | chr8_2:22932000-22932019 | Msa1240430:CDS | 20.0% |
!!! | ATAGATTTCATTTTTCTTTC+TGG | - | chr8_2:22932148-22932167 | Msa1240430:CDS | 20.0% |
!! | AATATAGTTTCATAATACTC+AGG | - | chr8_2:22932181-22932200 | Msa1240430:exon | 20.0% |
!! | ATATAGTTTCATAATACTCA+GGG | - | chr8_2:22932182-22932201 | Msa1240430:exon | 20.0% |
!! | CACAATTAGATAATTATACA+TGG | + | chr8_2:22932487-22932506 | None:intergenic | 20.0% |
!! | AAAAATATCTTACTTGACAA+TGG | + | chr8_2:22933011-22933030 | None:intergenic | 20.0% |
!!! | GATATTCTTGAATGATATTT+TGG | - | chr8_2:22933563-22933582 | Msa1240430:five_prime_UTR | 20.0% |
! | AATGGAAAATTGAAAGGAAA+TGG | + | chr8_2:22928222-22928241 | None:intergenic | 25.0% |
! | ACAGAAAATGGAAAATTGAA+AGG | + | chr8_2:22928228-22928247 | None:intergenic | 25.0% |
!! | GAAATAGTTGATTGTTGATT+AGG | - | chr8_2:22928592-22928611 | Msa1240430:intron | 25.0% |
! | TCTTGGCATTATTTAATTGA+TGG | - | chr8_2:22928652-22928671 | Msa1240430:intron | 25.0% |
!!! | TTTTTGGCTGATTAATAGTT+TGG | - | chr8_2:22928687-22928706 | Msa1240430:intron | 25.0% |
! | TGCAATTCTTCAAAATATGA+AGG | + | chr8_2:22928763-22928782 | None:intergenic | 25.0% |
! | AACTATAAGAGAAAACTATC+AGG | - | chr8_2:22928904-22928923 | Msa1240430:intron | 25.0% |
!! | TGGTTTTTGATAGAACATTA+TGG | - | chr8_2:22928961-22928980 | Msa1240430:intron | 25.0% |
! | AAATTTAAATGGCTAGACTA+GGG | + | chr8_2:22929118-22929137 | None:intergenic | 25.0% |
! | AAAATTTAAATGGCTAGACT+AGG | + | chr8_2:22929119-22929138 | None:intergenic | 25.0% |
! | TTCCTTTGCTACATATAATT+TGG | - | chr8_2:22929381-22929400 | Msa1240430:intron | 25.0% |
! | TATACCAGTAATACATGATA+CGG | + | chr8_2:22929579-22929598 | None:intergenic | 25.0% |
!! | TTCACTAGAATTTTACATTC+TGG | - | chr8_2:22929637-22929656 | Msa1240430:intron | 25.0% |
!!! | TAGAATTTTACATTCTGGAA+AGG | - | chr8_2:22929642-22929661 | Msa1240430:intron | 25.0% |
!! | AAAAGTATAACTGAAAGTCA+TGG | + | chr8_2:22929746-22929765 | None:intergenic | 25.0% |
!! | TTGTTATAATTGGTCTGTTT+GGG | - | chr8_2:22929831-22929850 | Msa1240430:intron | 25.0% |
! | GAGTTTATCAAAATAGCTTA+TGG | - | chr8_2:22929907-22929926 | Msa1240430:intron | 25.0% |
!! | ATAAGCACTTTTATGATAAG+TGG | - | chr8_2:22930038-22930057 | Msa1240430:intron | 25.0% |
!! | ATGTTAAAATGGACTTTAAC+TGG | + | chr8_2:22930124-22930143 | None:intergenic | 25.0% |
!!! | GCAATACCAAATTATTTTGT+CGG | + | chr8_2:22930204-22930223 | None:intergenic | 25.0% |
! | GTATTGCTGAAATAATTCAA+GGG | - | chr8_2:22930217-22930236 | Msa1240430:intron | 25.0% |
! | AGATAGAAATAGTATAAGCT+CGG | - | chr8_2:22930364-22930383 | Msa1240430:intron | 25.0% |
! | TATTGCAAAGTTTAGTGTTA+AGG | - | chr8_2:22930387-22930406 | Msa1240430:intron | 25.0% |
! | AACTAAAACATAGATCACTT+AGG | + | chr8_2:22930752-22930771 | None:intergenic | 25.0% |
! | TTAGGCTTAATGTAGAAAAA+TGG | + | chr8_2:22930900-22930919 | None:intergenic | 25.0% |
! | GCAACAATAACTGATAAAAT+TGG | + | chr8_2:22931120-22931139 | None:intergenic | 25.0% |
! | CCTGTAATAATTTGAGAAAA+TGG | + | chr8_2:22931248-22931267 | None:intergenic | 25.0% |
!! | CCATTTTCTCAAATTATTAC+AGG | - | chr8_2:22931245-22931264 | Msa1240430:intron | 25.0% |
! | ATAGAAATATTCATCCATGT+AGG | + | chr8_2:22931521-22931540 | None:intergenic | 25.0% |
!! | TATTTCTATGAAGATGAAAG+AGG | - | chr8_2:22931532-22931551 | Msa1240430:intron | 25.0% |
!! | TGACATTGTGTTATGTATTT+TGG | - | chr8_2:22931668-22931687 | Msa1240430:intron | 25.0% |
! | TATAATGTTATCAGCTCAAA+TGG | - | chr8_2:22931815-22931834 | Msa1240430:CDS | 25.0% |
! | AGAAAAGTAAAATCAGAGTT+GGG | + | chr8_2:22931860-22931879 | None:intergenic | 25.0% |
! | AAGAAAAGTAAAATCAGAGT+TGG | + | chr8_2:22931861-22931880 | None:intergenic | 25.0% |
!! | AATGTACTTGTTGAAAGTTT+CGG | + | chr8_2:22931913-22931932 | None:intergenic | 25.0% |
!! | AATTTTTCCATTCAAGGATT+GGG | + | chr8_2:22931985-22932004 | None:intergenic | 25.0% |
!! | TAATTTTTCCATTCAAGGAT+TGG | + | chr8_2:22931986-22932005 | None:intergenic | 25.0% |
! | ATCCTTGAATGGAAAAATTA+TGG | - | chr8_2:22931986-22932005 | Msa1240430:CDS | 25.0% |
!!! | AAATCAAGAAGCTTTAAGAA+GGG | + | chr8_2:22932052-22932071 | None:intergenic | 25.0% |
!!! | AAAATCAAGAAGCTTTAAGA+AGG | + | chr8_2:22932053-22932072 | None:intergenic | 25.0% |
! | AATTATAGTATCCTAATGTC+AGG | + | chr8_2:22932540-22932559 | None:intergenic | 25.0% |
! | GAGGATAAAAGCAAAATTAT+GGG | + | chr8_2:22932649-22932668 | None:intergenic | 25.0% |
! | TGAGGATAAAAGCAAAATTA+TGG | + | chr8_2:22932650-22932669 | None:intergenic | 25.0% |
!! | TTGTTGAAGTTATGAGATTT+TGG | - | chr8_2:22933073-22933092 | Msa1240430:intron | 25.0% |
!! | GTTATGAGATTTTGGATAAA+AGG | - | chr8_2:22933081-22933100 | Msa1240430:intron | 25.0% |
! | CATTATAGCAAACAAATAAC+AGG | + | chr8_2:22933273-22933292 | None:intergenic | 25.0% |
!!! | TTGTTTGCTATAATGTTTTC+AGG | - | chr8_2:22933278-22933297 | Msa1240430:intron | 25.0% |
! | ATTTACAATGTATCCCAATT+GGG | + | chr8_2:22933345-22933364 | None:intergenic | 25.0% |
! | TATTTACAATGTATCCCAAT+TGG | + | chr8_2:22933346-22933365 | None:intergenic | 25.0% |
! | CTTTAAATACCATGATGAAT+AGG | + | chr8_2:22933380-22933399 | None:intergenic | 25.0% |
!!! | GAAGGATTATATCTTGTTTT+CGG | - | chr8_2:22933537-22933556 | Msa1240430:five_prime_UTR | 25.0% |
!!! | AAGGATTATATCTTGTTTTC+GGG | - | chr8_2:22933538-22933557 | Msa1240430:five_prime_UTR | 25.0% |
GACAAAAGAGAAGTCTTAAT+GGG | + | chr8_2:22928100-22928119 | None:intergenic | 30.0% | |
AGACAAAAGAGAAGTCTTAA+TGG | + | chr8_2:22928101-22928120 | None:intergenic | 30.0% | |
CGATAAGGAAGAATGAAAAT+GGG | + | chr8_2:22928190-22928209 | None:intergenic | 30.0% | |
ACGATAAGGAAGAATGAAAA+TGG | + | chr8_2:22928191-22928210 | None:intergenic | 30.0% | |
AAATGGATGGAATTACGATA+AGG | + | chr8_2:22928205-22928224 | None:intergenic | 30.0% | |
GAAAATTGAAAGGAAATGGA+TGG | + | chr8_2:22928218-22928237 | None:intergenic | 30.0% | |
TTAAACCTGTTATTGCATCT+TGG | - | chr8_2:22928635-22928654 | Msa1240430:intron | 30.0% | |
ATAAGAGAAAACTATCAGGA+AGG | - | chr8_2:22928908-22928927 | Msa1240430:intron | 30.0% | |
!!! | TTGATTTTTTGATGCACTGA+AGG | - | chr8_2:22929183-22929202 | Msa1240430:intron | 30.0% |
!!! | TGATTTTTTGATGCACTGAA+GGG | - | chr8_2:22929184-22929203 | Msa1240430:intron | 30.0% |
TTGATATCTTTCTGTCTGAT+AGG | - | chr8_2:22929305-22929324 | Msa1240430:intron | 30.0% | |
ACCATTACTGATGATATGTT+TGG | - | chr8_2:22929348-22929367 | Msa1240430:intron | 30.0% | |
ACCAAACATATCATCAGTAA+TGG | + | chr8_2:22929352-22929371 | None:intergenic | 30.0% | |
CACCAAATTATATGTAGCAA+AGG | + | chr8_2:22929386-22929405 | None:intergenic | 30.0% | |
ATTACTGGTATAAGAAGCAA+AGG | - | chr8_2:22929587-22929606 | Msa1240430:CDS | 30.0% | |
! | GTTGTTATAATTGGTCTGTT+TGG | - | chr8_2:22929830-22929849 | Msa1240430:intron | 30.0% |
GGTATTGCTGAAATAATTCA+AGG | - | chr8_2:22930216-22930235 | Msa1240430:intron | 30.0% | |
ATGATATCAGATTGAGGAAA+GGG | - | chr8_2:22930240-22930259 | Msa1240430:intron | 30.0% | |
! | GTCGTGTGCTTAAATTTTAA+AGG | - | chr8_2:22930296-22930315 | Msa1240430:intron | 30.0% |
TTCTATCTTCGACAAACAAA+AGG | + | chr8_2:22930352-22930371 | None:intergenic | 30.0% | |
TTTAGGAAGTTACTGTGATA+AGG | - | chr8_2:22930472-22930491 | Msa1240430:intron | 30.0% | |
TTATCCGGAAAATCTATTGT+AGG | - | chr8_2:22930516-22930535 | Msa1240430:CDS | 30.0% | |
! | GTTTCCTACAATAGATTTTC+CGG | + | chr8_2:22930523-22930542 | None:intergenic | 30.0% |
ATAATAGGAGAGTCTTAACA+TGG | + | chr8_2:22930569-22930588 | None:intergenic | 30.0% | |
ATCGGATCAATATTTGTAAC+CGG | + | chr8_2:22930969-22930988 | None:intergenic | 30.0% | |
GTTACAAATATTGATCCGAT+TGG | - | chr8_2:22930969-22930988 | Msa1240430:intron | 30.0% | |
TTCTCCTGTAATTATCAGAA+AGG | - | chr8_2:22930995-22931014 | Msa1240430:intron | 30.0% | |
TCTACCTTTCTGATAATTAC+AGG | + | chr8_2:22931002-22931021 | None:intergenic | 30.0% | |
TTTATTCAACCATGAAGAAC+AGG | + | chr8_2:22931066-22931085 | None:intergenic | 30.0% | |
! | CTTGAATCTTTTGAATATGC+TGG | - | chr8_2:22931403-22931422 | Msa1240430:intron | 30.0% |
AAAGAATCTGCAACATATGT+CGG | + | chr8_2:22931616-22931635 | None:intergenic | 30.0% | |
!!! | TGTTATGTATTTTGGAACCA+AGG | - | chr8_2:22931676-22931695 | Msa1240430:intron | 30.0% |
! | GACCATAATTTTTCCATTCA+AGG | + | chr8_2:22931991-22932010 | None:intergenic | 30.0% |
! | TTGATTTTGTTACTATGCCA+TGG | - | chr8_2:22932065-22932084 | Msa1240430:CDS | 30.0% |
! | GAATTGACTTACGGTAAAAT+TGG | - | chr8_2:22932206-22932225 | Msa1240430:five_prime_UTR | 30.0% |
!!! | GTTTTTTTCATTCCCTTACA+TGG | - | chr8_2:22932435-22932454 | Msa1240430:intron | 30.0% |
ACATTTATCAAGCACATACA+TGG | + | chr8_2:22932580-22932599 | None:intergenic | 30.0% | |
AGAAATATTCTTGTGCATCA+TGG | - | chr8_2:22932831-22932850 | Msa1240430:intron | 30.0% | |
TTCAACAAGATGAACTAGAA+AGG | + | chr8_2:22933061-22933080 | None:intergenic | 30.0% | |
TTTACAATGTATCCCAATTG+GGG | + | chr8_2:22933344-22933363 | None:intergenic | 30.0% | |
! | TTTTTCCTTCCTATTCATCA+TGG | - | chr8_2:22933368-22933387 | Msa1240430:intron | 30.0% |
AAATACCATGATGAATAGGA+AGG | + | chr8_2:22933376-22933395 | None:intergenic | 30.0% | |
! | GTATTAAAAGGTGTATAGTG+AGG | + | chr8_2:22933505-22933524 | None:intergenic | 30.0% |
!!! | AGGATTATATCTTGTTTTCG+GGG | - | chr8_2:22933539-22933558 | Msa1240430:five_prime_UTR | 30.0% |
GAGAAGTCTTAATGGGAATA+AGG | + | chr8_2:22928093-22928112 | None:intergenic | 35.0% | |
AGAGTGTATTGTGAAAACGA+AGG | + | chr8_2:22928127-22928146 | None:intergenic | 35.0% | |
GAAAATGGGTGAATGGAAAA+TGG | + | chr8_2:22928176-22928195 | None:intergenic | 35.0% | |
GAAGAATGAAAATGGGTGAA+TGG | + | chr8_2:22928183-22928202 | None:intergenic | 35.0% | |
TAATGCCAAGATGCAATAAC+AGG | + | chr8_2:22928643-22928662 | None:intergenic | 35.0% | |
! | GGACAGTTATTTAAAACCCA+GGG | + | chr8_2:22928713-22928732 | None:intergenic | 35.0% |
! | AGGACAGTTATTTAAAACCC+AGG | + | chr8_2:22928714-22928733 | None:intergenic | 35.0% |
!!! | TGGGTTTTAAATAACTGTCC+TGG | - | chr8_2:22928713-22928732 | Msa1240430:intron | 35.0% |
TGAAGAATTGCAGTCAAATG+CGG | - | chr8_2:22928771-22928790 | Msa1240430:intron | 35.0% | |
GAAACTATCAAGTAGACTAG+TGG | - | chr8_2:22928829-22928848 | Msa1240430:intron | 35.0% | |
!! | ACTAGTGGATTCTAGTAAGA+AGG | - | chr8_2:22928844-22928863 | Msa1240430:intron | 35.0% |
!! | CTAGTGGATTCTAGTAAGAA+GGG | - | chr8_2:22928845-22928864 | Msa1240430:intron | 35.0% |
!! | AATAGCCTTATCTCACTAAG+TGG | + | chr8_2:22929011-22929030 | None:intergenic | 35.0% |
!! | CTGATGATATGTTTGGTTCT+TGG | - | chr8_2:22929355-22929374 | Msa1240430:intron | 35.0% |
GTGACAATGATAATCCACTA+TGG | - | chr8_2:22929403-22929422 | Msa1240430:intron | 35.0% | |
GATAATCCACTATGGATCAT+CGG | - | chr8_2:22929411-22929430 | Msa1240430:intron | 35.0% | |
AAAAAACAATCCACCATCCT+CGG | + | chr8_2:22929449-22929468 | None:intergenic | 35.0% | |
TTTGTGTTCTTCACATGTTC+AGG | + | chr8_2:22929490-22929509 | None:intergenic | 35.0% | |
AATGCCGTATCATGTATTAC+TGG | - | chr8_2:22929572-22929591 | Msa1240430:CDS | 35.0% | |
TAACTGAAAGTCATGGTAAG+CGG | + | chr8_2:22929739-22929758 | None:intergenic | 35.0% | |
! | TATAATTGGTCTGTTTGGGT+TGG | - | chr8_2:22929835-22929854 | Msa1240430:intron | 35.0% |
! | AAAATGGACTTTAACTGGCA+TGG | + | chr8_2:22930119-22930138 | None:intergenic | 35.0% |
! | GGATTTTACTTCTTTCACCA+AGG | + | chr8_2:22930183-22930202 | None:intergenic | 35.0% |
GATGATATCAGATTGAGGAA+AGG | - | chr8_2:22930239-22930258 | Msa1240430:intron | 35.0% | |
AGTTTAGTGTTAAGGTTTGC+AGG | - | chr8_2:22930395-22930414 | Msa1240430:intron | 35.0% | |
ACACATTGCTTAATCTTTGC+AGG | - | chr8_2:22930645-22930664 | Msa1240430:CDS | 35.0% | |
CACATTGCTTAATCTTTGCA+GGG | - | chr8_2:22930646-22930665 | Msa1240430:CDS | 35.0% | |
! | TTTTCTCCAAATGCCAGATT+GGG | + | chr8_2:22930864-22930883 | None:intergenic | 35.0% |
! | ATTTTCTCCAAATGCCAGAT+TGG | + | chr8_2:22930865-22930884 | None:intergenic | 35.0% |
TAGAAAAATGGAAAAGCAGC+TGG | + | chr8_2:22930888-22930907 | None:intergenic | 35.0% | |
!! | TGTAAGGAAGTATTATCCTG+AGG | - | chr8_2:22930935-22930954 | Msa1240430:intron | 35.0% |
AAGTATTATCCTGAGGAGAA+TGG | - | chr8_2:22930942-22930961 | Msa1240430:intron | 35.0% | |
ATTACAGGAGAATTGCCAAT+CGG | + | chr8_2:22930987-22931006 | None:intergenic | 35.0% | |
GGATTAATACCTGTTCTTCA+TGG | - | chr8_2:22931054-22931073 | Msa1240430:intron | 35.0% | |
GGTAAACCAGAACAATGTTA+AGG | + | chr8_2:22931099-22931118 | None:intergenic | 35.0% | |
GTTGTGTTGAAAGATCTCAA+TGG | - | chr8_2:22931344-22931363 | Msa1240430:intron | 35.0% | |
!!! | GTGAATACTTTTAGCTCACA+CGG | - | chr8_2:22931444-22931463 | Msa1240430:intron | 35.0% |
!!! | TGTATTTTGGAACCAAGGTA+TGG | - | chr8_2:22931681-22931700 | Msa1240430:intron | 35.0% |
AGTTGGGTATGCATAATAGT+TGG | + | chr8_2:22931844-22931863 | None:intergenic | 35.0% | |
TATTTCTCCCAATCCTTGAA+TGG | - | chr8_2:22931975-22931994 | Msa1240430:CDS | 35.0% | |
!! | AGAAGCTTTAAGAAGGGAAA+AGG | + | chr8_2:22932046-22932065 | None:intergenic | 35.0% |
AAATTAAGCTGTGTGTCTCA+TGG | + | chr8_2:22932391-22932410 | None:intergenic | 35.0% | |
! | TTTTCATTCCCTTACATGGT+AGG | - | chr8_2:22932439-22932458 | Msa1240430:intron | 35.0% |
! | GCTTTTATCCTCATCTATTC+TGG | - | chr8_2:22932657-22932676 | Msa1240430:intron | 35.0% |
TTTATCCTCATCTATTCTGG+TGG | - | chr8_2:22932660-22932679 | Msa1240430:intron | 35.0% | |
GAAACAACCTACAACATCTA+GGG | + | chr8_2:22932869-22932888 | None:intergenic | 35.0% | |
AGTCTGACAGTAGCTATATT+AGG | + | chr8_2:22932891-22932910 | None:intergenic | 35.0% | |
AGCAAATGATACCTCTCTAA+TGG | - | chr8_2:22932948-22932967 | Msa1240430:intron | 35.0% | |
TCTAATGGAGAGGAATTCTT+TGG | - | chr8_2:22932963-22932982 | Msa1240430:intron | 35.0% | |
TCTTGTAAAGATGGTGAATG+AGG | - | chr8_2:22933305-22933324 | Msa1240430:intron | 35.0% | |
!!! | GTCAACACTTTTTCTGTAAC+TGG | + | chr8_2:22933414-22933433 | None:intergenic | 35.0% |
! | AAGGTGTATAGTGAGGTATT+TGG | + | chr8_2:22933498-22933517 | None:intergenic | 35.0% |
!!! | TATTTTGGCTCGTAACACAA+TGG | - | chr8_2:22933578-22933597 | Msa1240430:five_prime_UTR | 35.0% |
CTCTCTGTCTGTTGAAACAA+AGG | - | chr8_2:22928022-22928041 | Msa1240430:three_prime_UTR | 40.0% | |
ATGGGTGAATGGAAAATGGA+AGG | + | chr8_2:22928172-22928191 | None:intergenic | 40.0% | |
CTGATTAATAGTTTGGCCCT+GGG | - | chr8_2:22928694-22928713 | Msa1240430:intron | 40.0% | |
AAGGGTAGTTAGATCACTAG+AGG | - | chr8_2:22928863-22928882 | Msa1240430:intron | 40.0% | |
AGTTAGATCACTAGAGGTAG+AGG | - | chr8_2:22928869-22928888 | Msa1240430:intron | 40.0% | |
ACTAGAGGTAGAGGAAAACT+TGG | - | chr8_2:22928878-22928897 | Msa1240430:intron | 40.0% | |
GAAAACTATCAGGAAGGATC+TGG | - | chr8_2:22928914-22928933 | Msa1240430:intron | 40.0% | |
GGATCTGGAGATTAATGAGT+TGG | - | chr8_2:22928929-22928948 | Msa1240430:intron | 40.0% | |
CGTATCCACTTAGTGAGATA+AGG | - | chr8_2:22929003-22929022 | Msa1240430:intron | 40.0% | |
AAAGTCCGCATTTGCAATCT+GGG | + | chr8_2:22929086-22929105 | None:intergenic | 40.0% | |
AAAAGTCCGCATTTGCAATC+TGG | + | chr8_2:22929087-22929106 | None:intergenic | 40.0% | |
GCTTGTTCTATCAAGAACTG+AGG | - | chr8_2:22929261-22929280 | Msa1240430:CDS | 40.0% | |
GTTCTATCAAGAACTGAGGA+AGG | - | chr8_2:22929265-22929284 | Msa1240430:CDS | 40.0% | |
AACTATCCGATGATCCATAG+TGG | + | chr8_2:22929420-22929439 | None:intergenic | 40.0% | |
GTTCAGGCATCTCAACAATA+GGG | + | chr8_2:22929474-22929493 | None:intergenic | 40.0% | |
TGTTCAGGCATCTCAACAAT+AGG | + | chr8_2:22929475-22929494 | None:intergenic | 40.0% | |
CTGATGCCATCTACAACAAA+TGG | - | chr8_2:22929548-22929567 | Msa1240430:intron | 40.0% | |
!! | GCATTGCCATTTGTTGTAGA+TGG | + | chr8_2:22929557-22929576 | None:intergenic | 40.0% |
ACTTAGCTGTTTGTCCAAAC+AGG | - | chr8_2:22930074-22930093 | Msa1240430:intron | 40.0% | |
CTTAGCTGTTTGTCCAAACA+GGG | - | chr8_2:22930075-22930094 | Msa1240430:intron | 40.0% | |
!! | GCATGGAAGTATTCTAGACT+AGG | + | chr8_2:22930102-22930121 | None:intergenic | 40.0% |
CAAGGGATGATATCAGATTG+AGG | - | chr8_2:22930234-22930253 | Msa1240430:intron | 40.0% | |
GTCCACAAAGACACATTATC+CGG | - | chr8_2:22930501-22930520 | Msa1240430:intron | 40.0% | |
TTCCGGATAATGTGTCTTTG+TGG | + | chr8_2:22930506-22930525 | None:intergenic | 40.0% | |
CAGAACAATGTTAAGGACAG+GGG | + | chr8_2:22931092-22931111 | None:intergenic | 40.0% | |
CCAGAACAATGTTAAGGACA+GGG | + | chr8_2:22931093-22931112 | None:intergenic | 40.0% | |
ACCAGAACAATGTTAAGGAC+AGG | + | chr8_2:22931094-22931113 | None:intergenic | 40.0% | |
GCATCGTCACTTCAGATTAA+AGG | - | chr8_2:22931156-22931175 | Msa1240430:intron | 40.0% | |
CACAAGTTTCAGTGTCATGT+CGG | + | chr8_2:22931208-22931227 | None:intergenic | 40.0% | |
ATCTGTGTATGTGTCATGTC+CGG | - | chr8_2:22931302-22931321 | Msa1240430:intron | 40.0% | |
!! | GCTAAAAGTATTCACTTCCC+TGG | + | chr8_2:22931439-22931458 | None:intergenic | 40.0% |
TTGCCAAAATTGCTCCTACA+TGG | - | chr8_2:22931504-22931523 | Msa1240430:intron | 40.0% | |
! | CATCCATGTAGGAGCAATTT+TGG | + | chr8_2:22931510-22931529 | None:intergenic | 40.0% |
TATGAAGATGAAAGAGGACC+CGG | - | chr8_2:22931538-22931557 | Msa1240430:intron | 40.0% | |
TGAAAGTTTCGGTATCCCAT+GGG | + | chr8_2:22931902-22931921 | None:intergenic | 40.0% | |
TTGAAAGTTTCGGTATCCCA+TGG | + | chr8_2:22931903-22931922 | None:intergenic | 40.0% | |
CCAGCTAAATCAAAGTTCCA+TGG | + | chr8_2:22932085-22932104 | None:intergenic | 40.0% | |
! | CCATGGAACTTTGATTTAGC+TGG | - | chr8_2:22932082-22932101 | Msa1240430:CDS | 40.0% |
ATGACATGACAAGTAGCTAG+TGG | + | chr8_2:22932130-22932149 | None:intergenic | 40.0% | |
! | ACTCAGGGTGAATTGACTTA+CGG | - | chr8_2:22932197-22932216 | Msa1240430:five_prime_UTR | 40.0% |
CTTACGGTAAAATTGGTGAG+TGG | - | chr8_2:22932213-22932232 | Msa1240430:five_prime_UTR | 40.0% | |
TGTAGACATACCACACTTTC+AGG | + | chr8_2:22932308-22932327 | None:intergenic | 40.0% | |
TCTTCTCACCTACCATGTAA+GGG | + | chr8_2:22932450-22932469 | None:intergenic | 40.0% | |
TTCTTCTCACCTACCATGTA+AGG | + | chr8_2:22932451-22932470 | None:intergenic | 40.0% | |
AAGCGAATCAAAGGACTGTT+TGG | + | chr8_2:22932605-22932624 | None:intergenic | 40.0% | |
TCTGGCTATAAGCGAATCAA+AGG | + | chr8_2:22932614-22932633 | None:intergenic | 40.0% | |
CTTACTTCCCTAGATGTTGT+AGG | - | chr8_2:22932859-22932878 | Msa1240430:intron | 40.0% | |
GGAAACAACCTACAACATCT+AGG | + | chr8_2:22932870-22932889 | None:intergenic | 40.0% | |
ATGATACCTCTCTAATGGAG+AGG | - | chr8_2:22932953-22932972 | Msa1240430:intron | 40.0% | |
AGAATTCCTCTCCATTAGAG+AGG | + | chr8_2:22932962-22932981 | None:intergenic | 40.0% | |
GACAATGGTCACTAACATCT+AGG | + | chr8_2:22932996-22933015 | None:intergenic | 40.0% | |
ATGAACTAGACAGCAACTGT+CGG | + | chr8_2:22933182-22933201 | None:intergenic | 40.0% | |
! | TAATGCAATGCTTTTGCTGC+TGG | + | chr8_2:22933245-22933264 | None:intergenic | 40.0% |
TCAGGTGACTCTTGTAAAGA+TGG | - | chr8_2:22933296-22933315 | Msa1240430:intron | 40.0% | |
TTCTGCTAACATCCCCAATT+GGG | - | chr8_2:22933329-22933348 | Msa1240430:intron | 40.0% | |
!! | CAGAAAAAGTGTTGACATCG+AGG | - | chr8_2:22933418-22933437 | Msa1240430:intron | 40.0% |
AGAGAGAGAGATTCTCCGAT+GGG | + | chr8_2:22927998-22928017 | None:intergenic | 45.0% | |
GCTGATTAATAGTTTGGCCC+TGG | - | chr8_2:22928693-22928712 | Msa1240430:intron | 45.0% | |
GCTTAATTGCGGTCACATTG+CGG | - | chr8_2:22928802-22928821 | Msa1240430:intron | 45.0% | |
TCTGTCTGATAGGAAGACCA+TGG | - | chr8_2:22929315-22929334 | Msa1240430:intron | 45.0% | |
ATCGGATAGTTTAGCTACCG+AGG | - | chr8_2:22929429-22929448 | Msa1240430:intron | 45.0% | |
GATAGTTTAGCTACCGAGGA+TGG | - | chr8_2:22929433-22929452 | Msa1240430:intron | 45.0% | |
GCGGTCAACGCAATATGAAA+CGG | + | chr8_2:22929526-22929545 | None:intergenic | 45.0% | |
GTTGTAGATGGCATCAGTTG+CGG | + | chr8_2:22929545-22929564 | None:intergenic | 45.0% | |
AAGAAGCAAAGGAGTCTACC+TGG | - | chr8_2:22929598-22929617 | Msa1240430:CDS | 45.0% | |
AGTCTACCTGGATCAGAGAT+GGG | - | chr8_2:22929610-22929629 | Msa1240430:intron | 45.0% | |
TGGAAAGGCTGACAACTTGA+TGG | - | chr8_2:22929657-22929676 | Msa1240430:intron | 45.0% | |
TTCTAGACTAGGACCCTGTT+TGG | + | chr8_2:22930091-22930110 | None:intergenic | 45.0% | |
! | GGTTTTCGACTAGCATACCT+TGG | - | chr8_2:22930163-22930182 | Msa1240430:intron | 45.0% |
! | ACGTCGTTCTGAATAGACCA+TGG | - | chr8_2:22930671-22930690 | Msa1240430:CDS | 45.0% |
! | CGTCGTTCTGAATAGACCAT+GGG | - | chr8_2:22930672-22930691 | Msa1240430:CDS | 45.0% |
! | CTTTTCCAGCCACTGAACAA+AGG | + | chr8_2:22930698-22930717 | None:intergenic | 45.0% |
CTTTGTTCAGTGGCTGGAAA+AGG | - | chr8_2:22930696-22930715 | Msa1240430:intron | 45.0% | |
CAAATGCCAGATTGGGAAGA+GGG | + | chr8_2:22930857-22930876 | None:intergenic | 45.0% | |
TTATCCTGAGGAGAATGGAC+CGG | - | chr8_2:22930947-22930966 | Msa1240430:intron | 45.0% | |
CCCTGTCCTTAACATTGTTC+TGG | - | chr8_2:22931090-22931109 | Msa1240430:intron | 45.0% | |
TGATGTGTCTGTGTCGTGTA+CGG | - | chr8_2:22931271-22931290 | Msa1240430:intron | 45.0% | |
GAACTATGAACCACAGACAC+CGG | + | chr8_2:22931324-22931343 | None:intergenic | 45.0% | |
!! | TATGCTGGTTCGATAAGACC+AGG | - | chr8_2:22931418-22931437 | Msa1240430:intron | 45.0% |
!! | ATGCTGGTTCGATAAGACCA+GGG | - | chr8_2:22931419-22931438 | Msa1240430:intron | 45.0% |
!!! | TACTTTTAGCTCACACGGTG+AGG | - | chr8_2:22931449-22931468 | Msa1240430:intron | 45.0% |
!!! | ACTTTTAGCTCACACGGTGA+GGG | - | chr8_2:22931450-22931469 | Msa1240430:intron | 45.0% |
! | AGACCGACAAAGCTTTTGGA+TGG | - | chr8_2:22931561-22931580 | Msa1240430:intron | 45.0% |
! | GACCGACAAAGCTTTTGGAT+GGG | - | chr8_2:22931562-22931581 | Msa1240430:intron | 45.0% |
! | CACCCATCCAAAAGCTTTGT+CGG | + | chr8_2:22931567-22931586 | None:intergenic | 45.0% |
GCAACAGCATAACCATACCT+TGG | + | chr8_2:22931696-22931715 | None:intergenic | 45.0% | |
AATATGTCTCACGCCATGCA+GGG | + | chr8_2:22931724-22931743 | None:intergenic | 45.0% | |
GCGAAAAGACTTCATGCTAC+AGG | - | chr8_2:22931746-22931765 | Msa1240430:intron | 45.0% | |
AAAGTTTCGGTATCCCATGG+GGG | + | chr8_2:22931900-22931919 | None:intergenic | 45.0% | |
GAAAGTTTCGGTATCCCATG+GGG | + | chr8_2:22931901-22931920 | None:intergenic | 45.0% | |
CGGGTGTGACTACAATATGA+AGG | - | chr8_2:22931947-22931966 | Msa1240430:CDS | 45.0% | |
GACAAAAGATCACATCTGCG+AGG | - | chr8_2:22932242-22932261 | Msa1240430:five_prime_UTR | 45.0% | |
AATGGCAAGTTTCTTGGTGG+TGG | + | chr8_2:22932269-22932288 | None:intergenic | 45.0% | |
! | GGTAATGGCAAGTTTCTTGG+TGG | + | chr8_2:22932272-22932291 | None:intergenic | 45.0% |
! | GGAGGTAATGGCAAGTTTCT+TGG | + | chr8_2:22932275-22932294 | None:intergenic | 45.0% |
TATGGGCATCTGAGAAGTTC+TGG | + | chr8_2:22932632-22932651 | None:intergenic | 45.0% | |
TACAGCCACCAGAATAGATG+AGG | + | chr8_2:22932668-22932687 | None:intergenic | 45.0% | |
CTATTCTGGTGGCTGTAGAA+CGG | - | chr8_2:22932671-22932690 | Msa1240430:intron | 45.0% | |
GTAGAACAATTGTCGAAGCC+CGG | + | chr8_2:22932773-22932792 | None:intergenic | 45.0% | |
CTTCTGCTAACATCCCCAAT+TGG | - | chr8_2:22933328-22933347 | Msa1240430:intron | 45.0% | |
!!! | TTTAATTTGTAAAATAAAAA+GGG | + | chr8_2:22928503-22928522 | None:intergenic | 5.0% |
!!! | TTTTAATTTGTAAAATAAAA+AGG | + | chr8_2:22928504-22928523 | None:intergenic | 5.0% |
GAGAGAGAGATTCTCCGATG+GGG | + | chr8_2:22927997-22928016 | None:intergenic | 50.0% | |
GAGAGAGAGAGATTCTCCGA+TGG | + | chr8_2:22927999-22928018 | None:intergenic | 50.0% | |
ACGCGACTACGACTATTACC+AGG | + | chr8_2:22928734-22928753 | None:intergenic | 50.0% | |
CGGCTGATGTGGCTTAATTG+CGG | - | chr8_2:22928791-22928810 | Msa1240430:intron | 50.0% | |
TAATGGTGAAGCTCGTGCCA+TGG | + | chr8_2:22929335-22929354 | None:intergenic | 50.0% | |
AGTTTAGCTACCGAGGATGG+TGG | - | chr8_2:22929436-22929455 | Msa1240430:intron | 50.0% | |
GAGTCTACCTGGATCAGAGA+TGG | - | chr8_2:22929609-22929628 | Msa1240430:intron | 50.0% | |
AATCCTCCCATCTCTGATCC+AGG | + | chr8_2:22929619-22929638 | None:intergenic | 50.0% | |
AGAGGATCAACGACGACAGT+AGG | + | chr8_2:22929691-22929710 | None:intergenic | 50.0% | |
TGTCGTCGTTGATCCTCTTC+CGG | - | chr8_2:22929693-22929712 | Msa1240430:intron | 50.0% | |
TCTTCCGGAAGGTCTAGACA+GGG | - | chr8_2:22929708-22929727 | Msa1240430:intron | 50.0% | |
GGGCGTACAAATACGTGATC+AGG | + | chr8_2:22930837-22930856 | None:intergenic | 50.0% | |
CCAAATGCCAGATTGGGAAG+AGG | + | chr8_2:22930858-22930877 | None:intergenic | 50.0% | |
CCTCTTCCCAATCTGGCATT+TGG | - | chr8_2:22930855-22930874 | Msa1240430:intron | 50.0% | |
!!! | CTTTTAGCTCACACGGTGAG+GGG | - | chr8_2:22931451-22931470 | Msa1240430:intron | 50.0% |
! | CAAAAGCTTTGTCGGTCTCC+GGG | + | chr8_2:22931559-22931578 | None:intergenic | 50.0% |
! | CCAAAAGCTTTGTCGGTCTC+CGG | + | chr8_2:22931560-22931579 | None:intergenic | 50.0% |
! | CAAAGCTTTTGGATGGGTGC+TGG | - | chr8_2:22931568-22931587 | Msa1240430:intron | 50.0% |
GAATATGTCTCACGCCATGC+AGG | + | chr8_2:22931725-22931744 | None:intergenic | 50.0% | |
! | ATGTGACTTTTCAGCCCCCA+TGG | - | chr8_2:22931883-22931902 | Msa1240430:CDS | 50.0% |
! | TGTGACTTTTCAGCCCCCAT+GGG | - | chr8_2:22931884-22931903 | Msa1240430:CDS | 50.0% |
AACTTGCCATTACCTCCTCC+AGG | - | chr8_2:22932278-22932297 | Msa1240430:intron | 50.0% | |
ACACTTTCAGGAACACCTGG+AGG | + | chr8_2:22932296-22932315 | None:intergenic | 50.0% | |
TCCAGGTGTTCCTGAAAGTG+TGG | - | chr8_2:22932295-22932314 | Msa1240430:intron | 50.0% | |
ACCACACTTTCAGGAACACC+TGG | + | chr8_2:22932299-22932318 | None:intergenic | 50.0% | |
CTAATGTCAGGCAGCACTAG+AGG | + | chr8_2:22932528-22932547 | None:intergenic | 50.0% | |
CTCTAGTGCTGCCTGACATT+AGG | - | chr8_2:22932526-22932545 | Msa1240430:intron | 50.0% | |
TATAGGTGGTAGGGTAGGGT+GGG | - | chr8_2:22932703-22932722 | Msa1240430:intron | 50.0% | |
! | AAGATTGGCCGCAATCTGAG+CGG | + | chr8_2:22932734-22932753 | None:intergenic | 50.0% |
! | AACTGTCGGTTAAGCAGTGG+GGG | + | chr8_2:22933168-22933187 | None:intergenic | 50.0% |
! | CAACTGTCGGTTAAGCAGTG+GGG | + | chr8_2:22933169-22933188 | None:intergenic | 50.0% |
! | GCAACTGTCGGTTAAGCAGT+GGG | + | chr8_2:22933170-22933189 | None:intergenic | 50.0% |
! | AGCAACTGTCGGTTAAGCAG+TGG | + | chr8_2:22933171-22933190 | None:intergenic | 50.0% |
AGATTCTCCGATGGGGACGA+CGG | + | chr8_2:22927990-22928009 | None:intergenic | 55.0% | |
GCAGTCAAATGCGGCTGATG+TGG | - | chr8_2:22928780-22928799 | Msa1240430:intron | 55.0% | |
TGCGGCCCAGATTGCAAATG+CGG | - | chr8_2:22929078-22929097 | Msa1240430:intron | 55.0% | |
CTACCTGGATCAGAGATGGG+AGG | - | chr8_2:22929613-22929632 | Msa1240430:intron | 55.0% | |
GTCGTTGATCCTCTTCCGGA+AGG | - | chr8_2:22929697-22929716 | Msa1240430:intron | 55.0% | |
CTGTCTAGACCTTCCGGAAG+AGG | + | chr8_2:22929709-22929728 | None:intergenic | 55.0% | |
CTCTTCCGGAAGGTCTAGAC+AGG | - | chr8_2:22929707-22929726 | Msa1240430:intron | 55.0% | |
CTCACCCTGTCTAGACCTTC+CGG | + | chr8_2:22929715-22929734 | None:intergenic | 55.0% | |
GACCATGGGCCTTTGTTCAG+TGG | - | chr8_2:22930686-22930705 | Msa1240430:intron | 55.0% | |
AGCCACTGAACAAAGGCCCA+TGG | + | chr8_2:22930691-22930710 | None:intergenic | 55.0% | |
ATGGGCCTTTGTTCAGTGGC+TGG | - | chr8_2:22930690-22930709 | Msa1240430:intron | 55.0% | |
TGTACGCCCTCTTCCCAATC+TGG | - | chr8_2:22930848-22930867 | Msa1240430:intron | 55.0% | |
GTAACCGGTCCATTCTCCTC+AGG | + | chr8_2:22930954-22930973 | None:intergenic | 55.0% | |
TCTGTGTCGTGTACGGTGTC+TGG | - | chr8_2:22931278-22931297 | Msa1240430:intron | 55.0% | |
TGTGTCATGTCCGGTGTCTG+TGG | - | chr8_2:22931311-22931330 | Msa1240430:intron | 55.0% | |
! | CCGGAGACCGACAAAGCTTT+TGG | - | chr8_2:22931557-22931576 | Msa1240430:intron | 55.0% |
GGAACACCTGGAGGAGGTAA+TGG | + | chr8_2:22932287-22932306 | None:intergenic | 55.0% | |
CTTTCAGGAACACCTGGAGG+AGG | + | chr8_2:22932293-22932312 | None:intergenic | 55.0% | |
TCTGGTGGCTGTAGAACGGA+CGG | - | chr8_2:22932675-22932694 | Msa1240430:intron | 55.0% | |
CCTACCCTACCACCTATAGG+CGG | + | chr8_2:22932701-22932720 | None:intergenic | 55.0% | |
CGCCTATAGGTGGTAGGGTA+GGG | - | chr8_2:22932699-22932718 | Msa1240430:intron | 55.0% | |
CACCCTACCCTACCACCTAT+AGG | + | chr8_2:22932704-22932723 | None:intergenic | 55.0% | |
CTATAGGTGGTAGGGTAGGG+TGG | - | chr8_2:22932702-22932721 | Msa1240430:intron | 55.0% | |
CTGCGCGCTGTTAGGAAGAT+TGG | + | chr8_2:22932749-22932768 | None:intergenic | 55.0% | |
! | ACTGTCGGTTAAGCAGTGGG+GGG | + | chr8_2:22933167-22933186 | None:intergenic | 55.0% |
CGGAAGGTCTAGACAGGGTG+AGG | - | chr8_2:22929713-22929732 | Msa1240430:intron | 60.0% | |
GGACGACACGTGTCAGACTC+TGG | + | chr8_2:22931187-22931206 | None:intergenic | 60.0% | |
GCTGTTGCATCTGCCCTGCA+TGG | - | chr8_2:22931708-22931727 | Msa1240430:intron | 60.0% | |
TAGAACGGACGGCCGCCTAT+AGG | - | chr8_2:22932686-22932705 | Msa1240430:intron | 60.0% | |
ACGGCCGCCTATAGGTGGTA+GGG | - | chr8_2:22932694-22932713 | Msa1240430:intron | 60.0% | |
CCGCCTATAGGTGGTAGGGT+AGG | - | chr8_2:22932698-22932717 | Msa1240430:intron | 60.0% | |
GGGTGGTACCGCTCAGATTG+CGG | - | chr8_2:22932723-22932742 | Msa1240430:intron | 60.0% | |
CTTCCTAACAGCGCGCAGAC+CGG | - | chr8_2:22932751-22932770 | Msa1240430:intron | 60.0% | |
TTCCTAACAGCGCGCAGACC+GGG | - | chr8_2:22932752-22932771 | Msa1240430:intron | 60.0% | |
TGGGGACGACGGAGGGAACA+CGG | + | chr8_2:22927979-22927998 | None:intergenic | 65.0% | |
GTTCCCTCCGTCGTCCCCAT+CGG | - | chr8_2:22927980-22927999 | Msa1240430:three_prime_UTR | 65.0% | |
TCTCCGATGGGGACGACGGA+GGG | + | chr8_2:22927986-22928005 | None:intergenic | 65.0% | |
TTCTCCGATGGGGACGACGG+AGG | + | chr8_2:22927987-22928006 | None:intergenic | 65.0% | |
AACGGACGGCCGCCTATAGG+TGG | - | chr8_2:22932689-22932708 | Msa1240430:intron | 65.0% | |
GACGGCCGCCTATAGGTGGT+AGG | - | chr8_2:22932693-22932712 | Msa1240430:intron | 65.0% | |
AGGTGGTAGGGTAGGGTGGG+TGG | - | chr8_2:22932706-22932725 | Msa1240430:intron | 65.0% | |
GGACGACGGAGGGAACACGG+CGG | + | chr8_2:22927976-22927995 | None:intergenic | 70.0% | |
AGCCCGGTCTGCGCGCTGTT+AGG | + | chr8_2:22932757-22932776 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_2 | gene | 22927916 | 22933602 | 22927916 | ID=Msa1240430;Name=Msa1240430 |
chr8_2 | mRNA | 22927916 | 22933602 | 22927916 | ID=Msa1240430-mRNA-1;Parent=Msa1240430;Name=Msa1240430-mRNA-1;_AED=0.08;_eAED=0.08;_QI=213|1|1|1|0.87|0.77|9|240|360 |
chr8_2 | exon | 22927916 | 22928218 | 22927916 | ID=Msa1240430-mRNA-1:exon:8205;Parent=Msa1240430-mRNA-1 |
chr8_2 | exon | 22929202 | 22929315 | 22929202 | ID=Msa1240430-mRNA-1:exon:8204;Parent=Msa1240430-mRNA-1 |
chr8_2 | exon | 22929550 | 22929621 | 22929550 | ID=Msa1240430-mRNA-1:exon:8203;Parent=Msa1240430-mRNA-1 |
chr8_2 | exon | 22929751 | 22929820 | 22929751 | ID=Msa1240430-mRNA-1:exon:8202;Parent=Msa1240430-mRNA-1 |
chr8_2 | exon | 22929924 | 22930021 | 22929924 | ID=Msa1240430-mRNA-1:exon:8201;Parent=Msa1240430-mRNA-1 |
chr8_2 | exon | 22930502 | 22930703 | 22930502 | ID=Msa1240430-mRNA-1:exon:8200;Parent=Msa1240430-mRNA-1 |
chr8_2 | exon | 22930784 | 22930851 | 22930784 | ID=Msa1240430-mRNA-1:exon:8199;Parent=Msa1240430-mRNA-1 |
chr8_2 | exon | 22931789 | 22932269 | 22931789 | ID=Msa1240430-mRNA-1:exon:8198;Parent=Msa1240430-mRNA-1 |
chr8_2 | exon | 22933475 | 22933602 | 22933475 | ID=Msa1240430-mRNA-1:exon:8197;Parent=Msa1240430-mRNA-1 |
chr8_2 | five_prime_UTR | 22933475 | 22933602 | 22933475 | ID=Msa1240430-mRNA-1:five_prime_utr;Parent=Msa1240430-mRNA-1 |
chr8_2 | five_prime_UTR | 22932185 | 22932269 | 22932185 | ID=Msa1240430-mRNA-1:five_prime_utr;Parent=Msa1240430-mRNA-1 |
chr8_2 | CDS | 22931789 | 22932184 | 22931789 | ID=Msa1240430-mRNA-1:cds;Parent=Msa1240430-mRNA-1 |
chr8_2 | CDS | 22930784 | 22930851 | 22930784 | ID=Msa1240430-mRNA-1:cds;Parent=Msa1240430-mRNA-1 |
chr8_2 | CDS | 22930502 | 22930703 | 22930502 | ID=Msa1240430-mRNA-1:cds;Parent=Msa1240430-mRNA-1 |
chr8_2 | CDS | 22929924 | 22930021 | 22929924 | ID=Msa1240430-mRNA-1:cds;Parent=Msa1240430-mRNA-1 |
chr8_2 | CDS | 22929751 | 22929820 | 22929751 | ID=Msa1240430-mRNA-1:cds;Parent=Msa1240430-mRNA-1 |
chr8_2 | CDS | 22929550 | 22929621 | 22929550 | ID=Msa1240430-mRNA-1:cds;Parent=Msa1240430-mRNA-1 |
chr8_2 | CDS | 22929202 | 22929315 | 22929202 | ID=Msa1240430-mRNA-1:cds;Parent=Msa1240430-mRNA-1 |
chr8_2 | CDS | 22928156 | 22928218 | 22928156 | ID=Msa1240430-mRNA-1:cds;Parent=Msa1240430-mRNA-1 |
chr8_2 | three_prime_UTR | 22927916 | 22928155 | 22927916 | ID=Msa1240430-mRNA-1:three_prime_utr;Parent=Msa1240430-mRNA-1 |
Gene Sequence |
Protein sequence |