Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457450 | XP_003602256.2 | 94.845 | 582 | 23 | 3 | 1 | 576 | 1 | 581 | 0.0 | 984 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457450 | sp|Q9FK07|CLPX1_ARATH | 64.322 | 597 | 170 | 11 | 4 | 576 | 2 | 579 | 0.0 | 679 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457450 | G7J7E6 | 94.845 | 582 | 23 | 3 | 1 | 576 | 1 | 581 | 0.0 | 984 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014790 | Msa1457450 | 0.820421 | 6.920042e-53 | -8.615850e-47 |
| Msa0021980 | Msa1457450 | 0.864051 | 1.605074e-64 | -8.615850e-47 |
| Msa0040420 | Msa1457450 | 0.806964 | 6.368347e-50 | -8.615850e-47 |
| Msa0053480 | Msa1457450 | 0.869835 | 2.298358e-66 | -8.615850e-47 |
| Msa0055650 | Msa1457450 | 0.826959 | 2.036831e-54 | -8.615850e-47 |
| Msa0089530 | Msa1457450 | 0.827391 | 1.605196e-54 | -8.615850e-47 |
| Msa0117300 | Msa1457450 | 0.824495 | 7.824532e-54 | -8.615850e-47 |
| Msa1352550 | Msa1457450 | 0.802649 | 5.074408e-49 | -8.615850e-47 |
| Msa1357720 | Msa1457450 | 0.810246 | 1.267984e-50 | -8.615850e-47 |
| Msa1363560 | Msa1457450 | 0.840782 | 7.066707e-58 | -8.615850e-47 |
| Msa1370630 | Msa1457450 | 0.811272 | 7.607982e-51 | -8.615850e-47 |
| Msa1371360 | Msa1457450 | 0.817384 | 3.391604e-52 | -8.615850e-47 |
| Msa1381720 | Msa1457450 | 0.800018 | 1.754302e-48 | -8.615850e-47 |
| Msa1386250 | Msa1457450 | 0.805472 | 1.313250e-49 | -8.615850e-47 |
| Msa1410180 | Msa1457450 | 0.816466 | 5.451769e-52 | -8.615850e-47 |
| Msa1415560 | Msa1457450 | 0.804574 | 2.023765e-49 | -8.615850e-47 |
| Msa1428440 | Msa1457450 | 0.811196 | 7.899599e-51 | -8.615850e-47 |
| Msa1428560 | Msa1457450 | 0.800578 | 1.349831e-48 | -8.615850e-47 |
| Msa1432250 | Msa1457450 | 0.814381 | 1.585791e-51 | -8.615850e-47 |
| Msa1433380 | Msa1457450 | 0.812262 | 4.632807e-51 | -8.615850e-47 |
| Msa1445250 | Msa1457450 | 0.819535 | 1.103741e-52 | -8.615850e-47 |
| Msa1457020 | Msa1457450 | 0.829954 | 3.855144e-55 | -8.615850e-47 |
| Msa1457070 | Msa1457450 | 0.862119 | 6.349911e-64 | -8.615850e-47 |
| Msa1457450 | Msa1459630 | 0.802589 | 5.222164e-49 | -8.615850e-47 |
| Msa0621190 | Msa1457450 | -0.815224 | 1.031592e-51 | -8.615850e-47 |
| Msa0639030 | Msa1457450 | 0.811474 | 6.874338e-51 | -8.615850e-47 |
| Msa0641020 | Msa1457450 | 0.821147 | 4.712199e-53 | -8.615850e-47 |
| Msa0641030 | Msa1457450 | 0.832716 | 8.063504e-56 | -8.615850e-47 |
| Msa0664130 | Msa1457450 | 0.807507 | 4.886783e-50 | -8.615850e-47 |
| Msa0679560 | Msa1457450 | 0.830730 | 2.491240e-55 | -8.615850e-47 |
| Msa0685880 | Msa1457450 | 0.801906 | 7.217024e-49 | -8.615850e-47 |
| Msa0688550 | Msa1457450 | 0.805139 | 1.541708e-49 | -8.615850e-47 |
| Msa0697200 | Msa1457450 | 0.812058 | 5.132739e-51 | -8.615850e-47 |
| Msa0697600 | Msa1457450 | 0.807569 | 4.741548e-50 | -8.615850e-47 |
| Msa0778580 | Msa1457450 | 0.855532 | 5.922663e-62 | -8.615850e-47 |
| Msa0796460 | Msa1457450 | 0.811646 | 6.307730e-51 | -8.615850e-47 |
| Msa0807980 | Msa1457450 | 0.812786 | 3.558395e-51 | -8.615850e-47 |
| Msa0815950 | Msa1457450 | 0.828891 | 6.986876e-55 | -8.615850e-47 |
| Msa0121460 | Msa1457450 | 0.827651 | 1.390828e-54 | -8.615850e-47 |
| Msa0173280 | Msa1457450 | 0.801921 | 7.165612e-49 | -8.615850e-47 |
| Msa0184030 | Msa1457450 | 0.815541 | 8.768380e-52 | -8.615850e-47 |
| Msa0185950 | Msa1457450 | 0.802502 | 5.442174e-49 | -8.615850e-47 |
| Msa0188500 | Msa1457450 | 0.807332 | 5.322949e-50 | -8.615850e-47 |
| Msa0216550 | Msa1457450 | 0.805859 | 1.088960e-49 | -8.615850e-47 |
| Msa0225370 | Msa1457450 | 0.846081 | 2.716949e-59 | -8.615850e-47 |
| Msa1230190 | Msa1457450 | 0.819361 | 1.209216e-52 | -8.615850e-47 |
| Msa1232330 | Msa1457450 | 0.801189 | 1.012316e-48 | -8.615850e-47 |
| Msa1233760 | Msa1457450 | 0.820997 | 5.102123e-53 | -8.615850e-47 |
| Msa1240430 | Msa1457450 | -0.822298 | 2.552680e-53 | -8.615850e-47 |
| Msa1266720 | Msa1457450 | 0.807423 | 5.092425e-50 | -8.615850e-47 |
| Msa1275340 | Msa1457450 | 0.804509 | 2.088053e-49 | -8.615850e-47 |
| Msa1276070 | Msa1457450 | 0.851276 | 9.863202e-61 | -8.615850e-47 |
| Msa1311150 | Msa1457450 | 0.806838 | 6.771547e-50 | -8.615850e-47 |
| Msa1328600 | Msa1457450 | 0.813029 | 3.146655e-51 | -8.615850e-47 |
| Msa1331730 | Msa1457450 | 0.804296 | 2.313002e-49 | -8.615850e-47 |
| Msa0379850 | Msa1457450 | 0.833444 | 5.313494e-56 | -8.615850e-47 |
| Msa0408160 | Msa1457450 | 0.801999 | 6.907360e-49 | -8.615850e-47 |
| Msa0411000 | Msa1457450 | 0.817988 | 2.477678e-52 | -8.615850e-47 |
| Msa0421390 | Msa1457450 | 0.833209 | 6.081422e-56 | -8.615850e-47 |
| Msa0425020 | Msa1457450 | 0.861467 | 1.005026e-63 | -8.615850e-47 |
| Msa0429170 | Msa1457450 | 0.802914 | 4.474864e-49 | -8.615850e-47 |
| Msa0439700 | Msa1457450 | 0.834891 | 2.306066e-56 | -8.615850e-47 |
| Msa0448400 | Msa1457450 | 0.813686 | 2.257412e-51 | -8.615850e-47 |
| Msa0455230 | Msa1457450 | 0.810757 | 9.836234e-51 | -8.615850e-47 |
| Msa0984840 | Msa1457450 | 0.803378 | 3.587627e-49 | -8.615850e-47 |
| Msa0984850 | Msa1457450 | 0.805603 | 1.232547e-49 | -8.615850e-47 |
| Msa0984860 | Msa1457450 | 0.811191 | 7.919566e-51 | -8.615850e-47 |
| Msa0985040 | Msa1457450 | 0.831328 | 1.776921e-55 | -8.615850e-47 |
| Msa0988500 | Msa1457450 | 0.813162 | 2.942829e-51 | -8.615850e-47 |
| Msa1026720 | Msa1457450 | 0.848825 | 4.788496e-60 | -8.615850e-47 |
| Msa1036360 | Msa1457450 | 0.813254 | 2.809549e-51 | -8.615850e-47 |
| Msa1038110 | Msa1457450 | 0.802545 | 5.332669e-49 | -8.615850e-47 |
| Msa1071310 | Msa1457450 | 0.811865 | 5.653687e-51 | -8.615850e-47 |
| Msa1076640 | Msa1457450 | 0.808237 | 3.417702e-50 | -8.615850e-47 |
| Msa1080790 | Msa1457450 | 0.802973 | 4.350581e-49 | -8.615850e-47 |
| Msa1081530 | Msa1457450 | 0.808837 | 2.545356e-50 | -8.615850e-47 |
| Msa1081710 | Msa1457450 | 0.870192 | 1.757497e-66 | -8.615850e-47 |
| Msa0241580 | Msa1457450 | 0.804554 | 2.043199e-49 | -8.615850e-47 |
| Msa0243820 | Msa1457450 | 0.802686 | 4.987117e-49 | -8.615850e-47 |
| Msa0256410 | Msa1457450 | 0.809452 | 1.878794e-50 | -8.615850e-47 |
| Msa0264240 | Msa1457450 | 0.809995 | 1.435931e-50 | -8.615850e-47 |
| Msa0266380 | Msa1457450 | 0.829480 | 5.026926e-55 | -8.615850e-47 |
| Msa0279490 | Msa1457450 | 0.800893 | 1.164066e-48 | -8.615850e-47 |
| Msa0282500 | Msa1457450 | 0.806731 | 7.133101e-50 | -8.615850e-47 |
| Msa0295850 | Msa1457450 | 0.809258 | 2.068357e-50 | -8.615850e-47 |
| Msa0305580 | Msa1457450 | 0.829617 | 4.657121e-55 | -8.615850e-47 |
| Msa0311330 | Msa1457450 | 0.815582 | 8.585462e-52 | -8.615850e-47 |
| Msa0334170 | Msa1457450 | 0.850216 | 1.960257e-60 | -8.615850e-47 |
| Msa0339560 | Msa1457450 | 0.825612 | 4.263438e-54 | -8.615850e-47 |
| Msa0341520 | Msa1457450 | 0.829234 | 5.769370e-55 | -8.615850e-47 |
| Msa0341860 | Msa1457450 | 0.815035 | 1.136004e-51 | -8.615850e-47 |
| Msa0363460 | Msa1457450 | 0.815141 | 1.076464e-51 | -8.615850e-47 |
| Msa1108780 | Msa1457450 | 0.834038 | 3.776307e-56 | -8.615850e-47 |
| Msa1113280 | Msa1457450 | 0.807079 | 6.022484e-50 | -8.615850e-47 |
| Msa1116850 | Msa1457450 | 0.828213 | 1.018782e-54 | -8.615850e-47 |
| Msa1117280 | Msa1457450 | 0.802075 | 6.662966e-49 | -8.615850e-47 |
| Msa1125450 | Msa1457450 | 0.811964 | 5.378492e-51 | -8.615850e-47 |
| Msa1164570 | Msa1457450 | 0.803062 | 4.169273e-49 | -8.615850e-47 |
| Msa1166170 | Msa1457450 | 0.837087 | 6.393171e-57 | -8.615850e-47 |
| Msa1166270 | Msa1457450 | 0.844572 | 6.959137e-59 | -8.615850e-47 |
| Msa1182400 | Msa1457450 | 0.816982 | 4.175882e-52 | -8.615850e-47 |
| Msa1191390 | Msa1457450 | 0.803599 | 3.227649e-49 | -8.615850e-47 |
| Msa1212740 | Msa1457450 | 0.816640 | 4.982032e-52 | -8.615850e-47 |
| Msa1216700 | Msa1457450 | 0.806751 | 7.066664e-50 | -8.615850e-47 |
| Msa1216900 | Msa1457450 | 0.819336 | 1.225266e-52 | -8.615850e-47 |
| Msa0496460 | Msa1457450 | 0.840714 | 7.362773e-58 | -8.615850e-47 |
| Msa0516310 | Msa1457450 | 0.915933 | 3.265342e-85 | -8.615850e-47 |
| Msa0540160 | Msa1457450 | 0.808673 | 2.758646e-50 | -8.615850e-47 |
| Msa0544930 | Msa1457450 | 0.850697 | 1.435816e-60 | -8.615850e-47 |
| Msa0563140 | Msa1457450 | 0.801728 | 7.853021e-49 | -8.615850e-47 |
| Msa0575540 | Msa1457450 | 0.848384 | 6.342240e-60 | -8.615850e-47 |
| Msa0861480 | Msa1457450 | 0.803534 | 3.330592e-49 | -8.615850e-47 |
| Msa0861560 | Msa1457450 | 0.819214 | 1.306385e-52 | -8.615850e-47 |
| Msa0883390 | Msa1457450 | 0.803793 | 2.941856e-49 | -8.615850e-47 |
| Msa0883410 | Msa1457450 | 0.817696 | 2.883850e-52 | -8.615850e-47 |
| Msa0883660 | Msa1457450 | 0.826962 | 2.033917e-54 | -8.615850e-47 |
| Msa0883670 | Msa1457450 | 0.823088 | 1.672295e-53 | -8.615850e-47 |
| Msa0883700 | Msa1457450 | 0.801301 | 9.603034e-49 | -8.615850e-47 |
| Msa0885320 | Msa1457450 | 0.836883 | 7.205066e-57 | -8.615850e-47 |
| Msa0887000 | Msa1457450 | 0.808169 | 3.533699e-50 | -8.615850e-47 |
| Msa0912220 | Msa1457450 | 0.816790 | 4.610613e-52 | -8.615850e-47 |
| Msa0912230 | Msa1457450 | 0.827293 | 1.694925e-54 | -8.615850e-47 |
| Msa0912470 | Msa1457450 | 0.803250 | 3.813841e-49 | -8.615850e-47 |
| Msa0930090 | Msa1457450 | 0.819702 | 1.010962e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457450 | MtrunA17_Chr3g0126871 | 94.845 | 582 | 23 | 3 | 1 | 576 | 1 | 581 | 0.0 | 984 |
| Msa1457450 | MtrunA17_Chr6g0476731 | 73.721 | 430 | 101 | 5 | 155 | 576 | 297 | 722 | 0.0 | 569 |
| Msa1457450 | MtrunA17_Chr4g0076871 | 55.952 | 84 | 29 | 2 | 259 | 337 | 1 | 81 | 3.50e-18 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457450 | AT5G53350.1 | 64.322 | 597 | 170 | 11 | 4 | 576 | 2 | 579 | 0.0 | 679 |
| Msa1457450 | AT1G33360.1 | 73.039 | 408 | 96 | 4 | 155 | 555 | 240 | 640 | 0.0 | 580 |
| Msa1457450 | AT5G49840.1 | 63.793 | 406 | 132 | 7 | 164 | 557 | 197 | 599 | 1.61e-167 | 489 |
| Msa1457450 | AT5G49840.3 | 63.547 | 406 | 133 | 7 | 164 | 557 | 197 | 599 | 8.94e-167 | 488 |
| Msa1457450 | AT5G49840.2 | 64.736 | 397 | 125 | 7 | 164 | 548 | 197 | 590 | 2.57e-166 | 486 |
| Msa1457450 | AT5G49840.4 | 65.234 | 256 | 76 | 5 | 164 | 409 | 197 | 449 | 1.30e-100 | 313 |
Find 198 sgRNAs with CRISPR-Local
Find 453 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAACTTACTCCATTAATT+TGG | 0.181501 | tig0038897:-13021 | Msa1457450:intergenic |
| CCTGGGAATTATGATGTTTC+TGG | 0.189953 | tig0038897:+9419 | Msa1457450:CDS |
| GTCACCTCTCGGATGCTTTC+GGG | 0.194782 | tig0038897:-11839 | Msa1457450:intergenic |
| CTTATTCATTGATGTAGTTT+TGG | 0.203238 | tig0038897:+14752 | Msa1457450:three_prime_UTR |
| TTATAGACTACGGAGGTTTC+TGG | 0.225714 | tig0038897:+14442 | Msa1457450:intron |
| GTGTTGGGGTGGGTCTAATA+TGG | 0.227398 | tig0038897:+9508 | Msa1457450:CDS |
| GCAATTGCATCATCATTATT+AGG | 0.235708 | tig0038897:+12389 | Msa1457450:CDS |
| CTTATGATGTAACCGCTTAT+AGG | 0.235987 | tig0038897:+9333 | Msa1457450:CDS |
| AAGAAGACATTCCAAATTAA+TGG | 0.238033 | tig0038897:+13010 | Msa1457450:CDS |
| ATGCTTTCGGGCTCCCTTCT+CGG | 0.243716 | tig0038897:-11827 | Msa1457450:intergenic |
| GGGCTTGATAAACATGTAAT+TGG | 0.255789 | tig0038897:+9566 | Msa1457450:CDS |
| CATTTGTTAAAATAATATAA+AGG | 0.269185 | tig0038897:+14574 | Msa1457450:three_prime_UTR |
| TGTCACCTCTCGGATGCTTT+CGG | 0.272202 | tig0038897:-11840 | Msa1457450:intergenic |
| GCTGCTAGCTCCGGTGATTC+GGG | 0.277221 | tig0038897:+9470 | Msa1457450:CDS |
| CAACATTGCAGTTTCGAGTT+TGG | 0.277238 | tig0038897:+8776 | Msa1457450:five_prime_UTR |
| GGCAATAATAGAGAGTATTT+TGG | 0.280673 | tig0038897:+13613 | Msa1457450:CDS |
| TGCTGCTAGCTCCGGTGATT+CGG | 0.290402 | tig0038897:+9469 | Msa1457450:CDS |
| CACTTTATTTGATTCCTGTT+TGG | 0.294237 | tig0038897:+14809 | Msa1457450:three_prime_UTR |
| ACATCATAAGGAACATGATT+AGG | 0.297555 | tig0038897:-9320 | Msa1457450:intergenic |
| GAAAAGCAATATTCTTCTAA+TGG | 0.301012 | tig0038897:+9856 | Msa1457450:CDS |
| AGGCGCCAAGATTCTTCTAT+TGG | 0.301304 | tig0038897:+12314 | Msa1457450:intron |
| CAAGATTCTTCTATTGGATT+TGG | 0.303237 | tig0038897:+12320 | Msa1457450:CDS |
| ACTCTAACATTGCCCCTTGC+AGG | 0.305379 | tig0038897:+10841 | Msa1457450:CDS |
| TTATGATGTAACCGCTTATA+GGG | 0.308651 | tig0038897:+9334 | Msa1457450:CDS |
| ATACTGGTGCTCGGGGATTA+CGG | 0.311273 | tig0038897:+13591 | Msa1457450:CDS |
| CAAAACTACATCAATGAATA+AGG | 0.311960 | tig0038897:-14751 | Msa1457450:intergenic |
| TACTGGTGCTCGGGGATTAC+GGG | 0.313829 | tig0038897:+13592 | Msa1457450:CDS |
| AAAAGCAATATTCTTCTAAT+GGG | 0.315637 | tig0038897:+9857 | Msa1457450:CDS |
| TGCTTCTCTAAAGCACTCTT+TGG | 0.316210 | tig0038897:-12983 | Msa1457450:intergenic |
| AGACATCTCTACTGATATTA+AGG | 0.319001 | tig0038897:-11567 | Msa1457450:intergenic |
| TGACTTAGAGAAAACAATTT+CGG | 0.321284 | tig0038897:+12196 | Msa1457450:CDS |
| CATCATAAGGAACATGATTA+GGG | 0.324327 | tig0038897:-9319 | Msa1457450:intergenic |
| AGTTGACAAGATTACCAAAA+AGG | 0.324638 | tig0038897:+11460 | Msa1457450:CDS |
| GAATCTATTATCTATGAATA+TGG | 0.325665 | tig0038897:-8928 | Msa1457450:intergenic |
| TACAAACCTAGCCAAGGTTT+TGG | 0.330534 | tig0038897:-10237 | Msa1457450:intergenic |
| GCAGATGAAAAGTATATTCT+TGG | 0.340392 | tig0038897:-12159 | Msa1457450:intergenic |
| TGCTTTCGGGCTCCCTTCTC+GGG | 0.340395 | tig0038897:-11826 | Msa1457450:intergenic |
| AACTGAAAATCAACTCATTC+AGG | 0.341124 | tig0038897:+12603 | Msa1457450:CDS |
| TTGGAAGTGGAGGCAGTAGA+AGG | 0.343348 | tig0038897:-9269 | Msa1457450:intergenic |
| GGAAACCGTCCAACAAATTC+AGG | 0.345544 | tig0038897:-12556 | Msa1457450:intergenic |
| AGAGGCGCTAAAATCCTTTA+TGG | 0.346107 | tig0038897:+14291 | Msa1457450:CDS |
| GGTGGTGGAGGAGGTGGTAG+TGG | 0.347419 | tig0038897:+9446 | Msa1457450:CDS |
| ATTTGTTAAAATAATATAAA+GGG | 0.350651 | tig0038897:+14575 | Msa1457450:three_prime_UTR |
| TGCCACAGATAGCACCTTCT+TGG | 0.354117 | tig0038897:-9600 | Msa1457450:intergenic |
| GATGTTTCTGGTGGTGGTGG+TGG | 0.354213 | tig0038897:+9431 | Msa1457450:CDS |
| TTGTTGATCCTCCTGAAGTT+TGG | 0.355689 | tig0038897:+9372 | Msa1457450:CDS |
| AGCCCTTTACAAATCTCCTT+TGG | 0.374826 | tig0038897:-9548 | Msa1457450:intergenic |
| GGTGGTGGTGGTGGAGGAGG+TGG | 0.375394 | tig0038897:+9440 | Msa1457450:CDS |
| TAGTATTACTACTACCCTTA+TGG | 0.379971 | tig0038897:-9244 | Msa1457450:intergenic |
| CGAATGCACCCCTGCCATAA+AGG | 0.380658 | tig0038897:-14305 | Msa1457450:intergenic |
| GAGAATCGAGTTTGCGGTTG+CGG | 0.383656 | tig0038897:-8888 | Msa1457450:intergenic |
| AGCAGTGATCTTATAGCATA+TGG | 0.387190 | tig0038897:+12526 | Msa1457450:CDS |
| TAGAAAACGTATGCGACATT+TGG | 0.388438 | tig0038897:-14716 | Msa1457450:intergenic |
| TGAAGGAAGTGAAGTGATAA+GGG | 0.393456 | tig0038897:-9190 | Msa1457450:intergenic |
| TCCGAGAGGTGACAATATTC+AGG | 0.396522 | tig0038897:+11849 | Msa1457450:CDS |
| CTCCGACCCGTTCTTCTCCT+TGG | 0.403332 | tig0038897:-14340 | Msa1457450:intergenic |
| TGTTGGGGTGGGTCTAATAT+GGG | 0.407701 | tig0038897:+9509 | Msa1457450:CDS |
| GGTTTAATACCTGAATTTGT+TGG | 0.411841 | tig0038897:+12547 | Msa1457450:CDS |
| AATTATGATGTTTCTGGTGG+TGG | 0.418857 | tig0038897:+9425 | Msa1457450:CDS |
| CGTCAAATGTCCGAGGAGAT+TGG | 0.422052 | tig0038897:-14846 | Msa1457450:intergenic |
| AGTTTCATAATTACAAATCA+TGG | 0.422294 | tig0038897:+14684 | Msa1457450:three_prime_UTR |
| CTCCAAAGGAGATTTGTAAA+GGG | 0.427231 | tig0038897:+9546 | Msa1457450:CDS |
| AGAATCGAGTTTGCGGTTGC+GGG | 0.429240 | tig0038897:-8887 | Msa1457450:intergenic |
| CGAGTTTGCGGTTGCGGGAA+GGG | 0.430292 | tig0038897:-8882 | Msa1457450:intergenic |
| ATCTTTCCAAGGAGAAGAAC+GGG | 0.431717 | tig0038897:+14334 | Msa1457450:CDS |
| ATCGTCGCCTGTTCTGATAT+CGG | 0.433596 | tig0038897:-14214 | Msa1457450:intergenic |
| GGAGGTTTCTGGTGGTGATC+AGG | 0.433681 | tig0038897:+14453 | Msa1457450:CDS |
| GCCTTCATCTTTGCACGTAC+AGG | 0.436134 | tig0038897:-12347 | Msa1457450:intergenic |
| GATCCTCCTGAAGTTTGGTC+TGG | 0.439271 | tig0038897:+9377 | Msa1457450:CDS |
| ATTCGGGGAATTCGAAAGAT+TGG | 0.439295 | tig0038897:+9486 | Msa1457450:CDS |
| ATTCTTCTAATGGGGCCAAC+AGG | 0.443100 | tig0038897:+9866 | Msa1457450:CDS |
| CAAATCCAATAGAAGAATCT+TGG | 0.444097 | tig0038897:-12319 | Msa1457450:intergenic |
| TTGAAGGAAGTGAAGTGATA+AGG | 0.445450 | tig0038897:-9191 | Msa1457450:intergenic |
| CTAATGGGGCCAACAGGATC+AGG | 0.446453 | tig0038897:+9872 | Msa1457450:CDS |
| ATCTGGAATGTTAGGCATGC+AGG | 0.446474 | tig0038897:+9773 | Msa1457450:intron |
| TATGATGTTTCTGGTGGTGG+TGG | 0.449788 | tig0038897:+9428 | Msa1457450:CDS |
| GGTGGAATTGTTGTTCGTCC+TGG | 0.450696 | tig0038897:+9401 | Msa1457450:CDS |
| CCACCACCAGACCAAACTTC+AGG | 0.451100 | tig0038897:-9383 | Msa1457450:intergenic |
| CGGCGGCGATTTCATCCATA+AGG | 0.452075 | tig0038897:+9229 | Msa1457450:CDS |
| TGATAAGGGGTGTTGATTAA+CGG | 0.452244 | tig0038897:-9176 | Msa1457450:intergenic |
| GCTGACAGACTAACAAGAAT+AGG | 0.452850 | tig0038897:-12577 | Msa1457450:intergenic |
| TATTCTGAGAATCGAGTTTG+CGG | 0.460423 | tig0038897:-8894 | Msa1457450:intergenic |
| CTATAAGCGGTTACATCATA+AGG | 0.461499 | tig0038897:-9332 | Msa1457450:intergenic |
| CCTGAAGTTTGGTCTGGTGG+TGG | 0.461621 | tig0038897:+9383 | Msa1457450:CDS |
| GAATTCGAAAGATTGGTGTT+GGG | 0.463989 | tig0038897:+9493 | Msa1457450:CDS |
| TCGTCGCCTGTTCTGATATC+GGG | 0.476838 | tig0038897:-14213 | Msa1457450:intergenic |
| AATCGCCGCCGCGGAGAGAA+AGG | 0.479064 | tig0038897:-9217 | Msa1457450:intergenic |
| CTCTGGTGAAGGTGTTCAGC+AGG | 0.479327 | tig0038897:+11588 | Msa1457450:CDS |
| TTCGACAAGGGTGTTGGAAG+TGG | 0.479331 | tig0038897:-9282 | Msa1457450:intergenic |
| TTTCGAATTCCCCGAATCAC+CGG | 0.480367 | tig0038897:-9480 | Msa1457450:intergenic |
| GCGGAGAGAAAGGGGTTTGA+AGG | 0.485780 | tig0038897:-9207 | Msa1457450:intergenic |
| GTGGAATTGTTGTTCGTCCT+GGG | 0.494095 | tig0038897:+9402 | Msa1457450:CDS |
| TTACAAATCTCCTTTGGAGT+AGG | 0.495128 | tig0038897:-9542 | Msa1457450:intergenic |
| GCGCTAAAATCCTTTATGGC+AGG | 0.497392 | tig0038897:+14295 | Msa1457450:CDS |
| GGTAGTGGTGCTGCTAGCTC+CGG | 0.497882 | tig0038897:+9461 | Msa1457450:CDS |
| CAGATACCCGATATCAGAAC+AGG | 0.498210 | tig0038897:+14207 | Msa1457450:intron |
| ACATGTAATTGGACAAGAAA+GGG | 0.498664 | tig0038897:+9577 | Msa1457450:CDS |
| ACTGAAGATGCTTGAGGGAA+CGG | 0.498830 | tig0038897:+11615 | Msa1457450:CDS |
| GGAATTCGAAAGATTGGTGT+TGG | 0.500869 | tig0038897:+9492 | Msa1457450:CDS |
| CGAAAGATTGGTGTTGGGGT+GGG | 0.509067 | tig0038897:+9498 | Msa1457450:CDS |
| AATCAATTAATTCAACCCTA+TGG | 0.509958 | tig0038897:+9031 | Msa1457450:exon |
| ATCGCCGCCGCGGAGAGAAA+GGG | 0.513488 | tig0038897:-9216 | Msa1457450:intergenic |
| ACGCAGCAGCAGCAGCCATA+GGG | 0.516649 | tig0038897:-9046 | Msa1457450:intergenic |
| ACTCCAAAGGAGATTTGTAA+AGG | 0.517462 | tig0038897:+9545 | Msa1457450:CDS |
| CGCTAAAATCCTTTATGGCA+GGG | 0.517917 | tig0038897:+14296 | Msa1457450:CDS |
| TTTGGTAGATGCCATGTATG+AGG | 0.520683 | tig0038897:+13631 | Msa1457450:CDS |
| AGAGTCTTCGACAAGGGTGT+TGG | 0.521311 | tig0038897:-9288 | Msa1457450:intergenic |
| GACATTACTTGCCAAAACCT+TGG | 0.522907 | tig0038897:+10226 | Msa1457450:CDS |
| GCAGGAGATTCAAATATTGA+TGG | 0.523586 | tig0038897:+9791 | Msa1457450:CDS |
| GCATTACTGAAGATGCTTGA+GGG | 0.524652 | tig0038897:+11610 | Msa1457450:CDS |
| CCTCCTGAAGTTTGGTCTGG+TGG | 0.529025 | tig0038897:+9380 | Msa1457450:CDS |
| TACATGCTGGCCACAATGGA+AGG | 0.532514 | tig0038897:-14493 | Msa1457450:intergenic |
| AACATGTAATTGGACAAGAA+AGG | 0.533092 | tig0038897:+9576 | Msa1457450:CDS |
| ACCTGTACGTGCAAAGATGA+AGG | 0.533384 | tig0038897:+12346 | Msa1457450:CDS |
| CACTGAAGCCTCACCTCCAA+CGG | 0.533562 | tig0038897:-14268 | Msa1457450:intergenic |
| TCTACTGATATTAAGGCTCT+CGG | 0.534855 | tig0038897:-11560 | Msa1457450:intergenic |
| GTACGTGCAAAGATGAAGGC+TGG | 0.535276 | tig0038897:+12350 | Msa1457450:CDS |
| GCTAAAATCCTTTATGGCAG+GGG | 0.537495 | tig0038897:+14297 | Msa1457450:CDS |
| TGGACAAGAAAGGGCCAAGA+AGG | 0.537784 | tig0038897:+9586 | Msa1457450:CDS |
| AACGCAGCAGCAGCAGCCAT+AGG | 0.537785 | tig0038897:-9047 | Msa1457450:intergenic |
| GGAGGTGAGGCTTCAGTGAG+AGG | 0.538010 | tig0038897:+14273 | Msa1457450:CDS |
| TAACATTGCCCCTTGCAGGC+TGG | 0.539074 | tig0038897:+10845 | Msa1457450:CDS |
| ATTGTCAATGTTCCCGAGAA+GGG | 0.544118 | tig0038897:+11814 | Msa1457450:CDS |
| TCGCCGCCGCGGAGAGAAAG+GGG | 0.544327 | tig0038897:-9215 | Msa1457450:intergenic |
| TCGAAAGATTGGTGTTGGGG+TGG | 0.545065 | tig0038897:+9497 | Msa1457450:CDS |
| TCGAGTTTGCGGTTGCGGGA+AGG | 0.548071 | tig0038897:-8883 | Msa1457450:intergenic |
| TGTAATTATGAAACTGACCA+TGG | 0.550169 | tig0038897:-14676 | Msa1457450:intergenic |
| ACCTGAATATTGTCACCTCT+CGG | 0.551037 | tig0038897:-11850 | Msa1457450:intergenic |
| GTTGCATCTGCAATAACAAA+GGG | 0.554210 | tig0038897:-10266 | Msa1457450:intergenic |
| TAGAGAAAACAATTTCGGAA+AGG | 0.560690 | tig0038897:+12201 | Msa1457450:CDS |
| ATTCGATCGTTATCTTTCCA+AGG | 0.564276 | tig0038897:+14323 | Msa1457450:CDS |
| GTTTCGATCAAAACCTTCAA+AGG | 0.567102 | tig0038897:+9067 | Msa1457450:CDS |
| CTAACTTGCCTGAGTGAGTG+TGG | 0.569064 | tig0038897:-10288 | Msa1457450:intergenic |
| CATAATTACAAATCATGGTG+TGG | 0.569146 | tig0038897:+14689 | Msa1457450:three_prime_UTR |
| AACATTTACAAACCTAGCCA+AGG | 0.572679 | tig0038897:-10243 | Msa1457450:intergenic |
| TGAAGACTCCGTTGGAGGTG+AGG | 0.573433 | tig0038897:+14260 | Msa1457450:CDS |
| GCAACGGTTTGATTACATGC+TGG | 0.574092 | tig0038897:-14506 | Msa1457450:intergenic |
| TTGATTAGAGTCTTCGACAA+GGG | 0.575403 | tig0038897:-9294 | Msa1457450:intergenic |
| GTTGTTGATGAAGACTCCGT+TGG | 0.581381 | tig0038897:+14252 | Msa1457450:CDS |
| AATTCGAAAGATTGGTGTTG+GGG | 0.581592 | tig0038897:+9494 | Msa1457450:CDS |
| TATCTTTCCAAGGAGAAGAA+CGG | 0.581840 | tig0038897:+14333 | Msa1457450:CDS |
| TACTTGCCAAAACCTTGGCT+AGG | 0.582606 | tig0038897:+10231 | Msa1457450:CDS |
| AATATCAGTAGAGATGTCTC+TGG | 0.582769 | tig0038897:+11571 | Msa1457450:CDS |
| GATTGTCAATGTTCCCGAGA+AGG | 0.583215 | tig0038897:+11813 | Msa1457450:intron |
| TGATTTCAACCCAATCCACA+TGG | 0.586337 | tig0038897:-14614 | Msa1457450:intergenic |
| GGCGGCGATTTCATCCATAA+GGG | 0.587537 | tig0038897:+9230 | Msa1457450:CDS |
| TCCAACATAACCAGCCTGCA+AGG | 0.587876 | tig0038897:-10855 | Msa1457450:intergenic |
| AACAGAACATTGATTCGTGT+GGG | 0.590661 | tig0038897:-8984 | Msa1457450:intergenic |
| AGTAGAGATGTCTCTGGTGA+AGG | 0.594236 | tig0038897:+11577 | Msa1457450:CDS |
| CCAACATAACCAGCCTGCAA+GGG | 0.595676 | tig0038897:-10854 | Msa1457450:intergenic |
| GAATATATCATGAAAAGTTG+TGG | 0.596768 | tig0038897:+9642 | Msa1457450:CDS |
| GTTGATGAAGACTCCGTTGG+AGG | 0.599048 | tig0038897:+14255 | Msa1457450:CDS |
| ACCCGTTTACCTGATCCTGT+TGG | 0.599247 | tig0038897:-9881 | Msa1457450:intergenic |
| AGATGCAACCACACTCACTC+AGG | 0.599951 | tig0038897:+10280 | Msa1457450:CDS |
| TGATTACATGCTGGCCACAA+TGG | 0.604296 | tig0038897:-14497 | Msa1457450:intergenic |
| GACAAGGGTGTTGGAAGTGG+AGG | 0.607729 | tig0038897:-9279 | Msa1457450:intergenic |
| TTTGGGGCAATACTGGTGGA+AGG | 0.608398 | tig0038897:+14770 | Msa1457450:three_prime_UTR |
| GGCATTACTGAAGATGCTTG+AGG | 0.609163 | tig0038897:+11609 | Msa1457450:CDS |
| ATAAAAGCATACCTCATACA+TGG | 0.611000 | tig0038897:-13642 | Msa1457450:intergenic |
| GACAGAGCTTCCTTCCATTG+TGG | 0.611284 | tig0038897:+14483 | Msa1457450:CDS |
| GTAATTATGAAACTGACCAT+GGG | 0.612306 | tig0038897:-14675 | Msa1457450:intergenic |
| GGTTGCATCTGCAATAACAA+AGG | 0.613374 | tig0038897:-10267 | Msa1457450:intergenic |
| TAATACCTGAATTTGTTGGA+CGG | 0.613858 | tig0038897:+12551 | Msa1457450:CDS |
| GGGAATTATGATGTTTCTGG+TGG | 0.617264 | tig0038897:+9422 | Msa1457450:CDS |
| AATGTGGCAGCTGCACAGCA+AGG | 0.619346 | tig0038897:+11419 | Msa1457450:CDS |
| GAACAGAACATTGATTCGTG+TGG | 0.624434 | tig0038897:-8985 | Msa1457450:intergenic |
| CCAGAAACATCATAATTCCC+AGG | 0.626744 | tig0038897:-9419 | Msa1457450:intergenic |
| AGCGTAATTGAGATAACGCG+AGG | 0.627927 | tig0038897:-9100 | Msa1457450:intergenic |
| AGTTCAATAGTGACTTCCCA+TGG | 0.628073 | tig0038897:+14659 | Msa1457450:three_prime_UTR |
| GGCCAAGAAGGTGCTATCTG+TGG | 0.629236 | tig0038897:+9598 | Msa1457450:CDS |
| AAAGCAATATTCTTCTAATG+GGG | 0.630912 | tig0038897:+9858 | Msa1457450:CDS |
| TCAGGCTGCAGATTATAATG+TGG | 0.638713 | tig0038897:+11403 | Msa1457450:intron |
| CAACATAACCAGCCTGCAAG+GGG | 0.640266 | tig0038897:-10853 | Msa1457450:intergenic |
| ACTATAATAAATATCAGCAA+CGG | 0.641364 | tig0038897:-14522 | Msa1457450:intergenic |
| TGGGGTGGGTCTAATATGGG+AGG | 0.644752 | tig0038897:+9512 | Msa1457450:CDS |
| CTGCTAGCTCCGGTGATTCG+GGG | 0.646957 | tig0038897:+9471 | Msa1457450:CDS |
| TTCAAACCCCTTTCTCTCCG+CGG | 0.655565 | tig0038897:+9209 | Msa1457450:CDS |
| GAAGGAAGTGAAGTGATAAG+GGG | 0.656718 | tig0038897:-9189 | Msa1457450:intergenic |
| CAAGGAGAAGAACGGGTCGG+AGG | 0.657030 | tig0038897:+14341 | Msa1457450:CDS |
| CCACCAGACCAAACTTCAGG+AGG | 0.658452 | tig0038897:-9380 | Msa1457450:intergenic |
| GTGTTGATTAACGGTGAACG+TGG | 0.659264 | tig0038897:-9167 | Msa1457450:intergenic |
| TTCTGTATTATAGACTACGG+AGG | 0.662943 | tig0038897:+14435 | Msa1457450:intron |
| GATTTCAACCCAATCCACAT+GGG | 0.663583 | tig0038897:-14613 | Msa1457450:intergenic |
| TAAGTTACGTCAAATGTCCG+AGG | 0.665816 | tig0038897:-14853 | Msa1457450:intergenic |
| TAGACTACGGAGGTTTCTGG+TGG | 0.669450 | tig0038897:+14445 | Msa1457450:intron |
| AGAAACAAGAACCCTATAAG+CGG | 0.677338 | tig0038897:-9345 | Msa1457450:intergenic |
| AAGCACTCTTTGGTTCTGTG+AGG | 0.677760 | tig0038897:-12973 | Msa1457450:intergenic |
| AACTTCAGGAGGATCAACAA+AGG | 0.682725 | tig0038897:-9369 | Msa1457450:intergenic |
| TTGATTAACGGTGAACGTGG+TGG | 0.683612 | tig0038897:-9164 | Msa1457450:intergenic |
| TTCCAAGGAGAAGAACGGGT+CGG | 0.684154 | tig0038897:+14338 | Msa1457450:CDS |
| GCATTCAATTACACACACGC+TGG | 0.686030 | tig0038897:+9128 | Msa1457450:CDS |
| TATGGATGAAATCGCCGCCG+CGG | 0.692523 | tig0038897:-9226 | Msa1457450:intergenic |
| GTCGTCATCATCAACAACGT+CGG | 0.694540 | tig0038897:-9819 | Msa1457450:intergenic |
| TTTGATTAGAGTCTTCGACA+AGG | 0.700712 | tig0038897:-9295 | Msa1457450:intergenic |
| GCGTAATTGAGATAACGCGA+GGG | 0.704959 | tig0038897:-9099 | Msa1457450:intergenic |
| AAACCCCTTTCTCTCCGCGG+CGG | 0.707422 | tig0038897:+9212 | Msa1457450:CDS |
| GGAGCCCGAAAGCATCCGAG+AGG | 0.742740 | tig0038897:+11835 | Msa1457450:CDS |
| GAAGGCTGGAAGTGTCACAG+AGG | 0.760315 | tig0038897:+12364 | Msa1457450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATATAACTTAAAATTAG+AGG | + | tig0038897:10355-10374 | Msa1457450:intron | 10.0% |
| !! | TGAAATGAATAATTAATATA+GGG | - | tig0038897:14117-14136 | Msa1457450:intergenic | 10.0% |
| !!! | CATTTGTTAAAATAATATAA+AGG | + | tig0038897:14574-14593 | Msa1457450:three_prime_UTR | 10.0% |
| !! | ATAAAAATCCAAAAGATAAA+AGG | + | tig0038897:8815-8834 | Msa1457450:five_prime_UTR | 15.0% |
| !!! | ATTTATTTCCTTTTATCTTT+TGG | - | tig0038897:8826-8845 | Msa1457450:intergenic | 15.0% |
| !! | TGTTCTTATATATAAGAAAA+TGG | - | tig0038897:10581-10600 | Msa1457450:intergenic | 15.0% |
| !!! | TCATCAAATTTTGAATTTTT+TGG | + | tig0038897:11271-11290 | Msa1457450:intron | 15.0% |
| !!! | TGAAAATTATTATTTTTGAC+AGG | + | tig0038897:12498-12517 | Msa1457450:intron | 15.0% |
| !! | GTGAAATGAATAATTAATAT+AGG | - | tig0038897:14118-14137 | Msa1457450:intergenic | 15.0% |
| !!! | TTTTGGATTTTTATTTACAG+TGG | - | tig0038897:8809-8828 | Msa1457450:intergenic | 20.0% |
| !! | GAATCTATTATCTATGAATA+TGG | - | tig0038897:8931-8950 | Msa1457450:intergenic | 20.0% |
| !!! | TTTTTAATGTTCTTACTATC+TGG | + | tig0038897:9756-9775 | Msa1457450:intron | 20.0% |
| !! | AAAAGCAATATTCTTCTAAT+GGG | + | tig0038897:9857-9876 | Msa1457450:CDS | 20.0% |
| !! | TAAATCACAAATTGTTCTAA+TGG | + | tig0038897:9993-10012 | Msa1457450:intron | 20.0% |
| !! | CAAATTTAAATGTACATAGA+TGG | + | tig0038897:10599-10618 | Msa1457450:intron | 20.0% |
| !! | TATATCTACATTTGTTCATT+AGG | - | tig0038897:10641-10660 | Msa1457450:intergenic | 20.0% |
| !! | ATTTAGACAATATTACAATG+TGG | + | tig0038897:10939-10958 | Msa1457450:intron | 20.0% |
| !! | AACAAAAAACACTCAAATAT+TGG | - | tig0038897:11197-11216 | Msa1457450:intergenic | 20.0% |
| !! | ACATTGCATAAATTTATTTC+AGG | + | tig0038897:11385-11404 | Msa1457450:intron | 20.0% |
| !! | GGAAAATATAGAAAATAATG+GGG | - | tig0038897:11488-11507 | Msa1457450:intergenic | 20.0% |
| !! | GGGAAAATATAGAAAATAAT+GGG | - | tig0038897:11489-11508 | Msa1457450:intergenic | 20.0% |
| !! | AGGGAAAATATAGAAAATAA+TGG | - | tig0038897:11490-11509 | Msa1457450:intergenic | 20.0% |
| !! | ATATTTGTGATCATTAAACT+TGG | + | tig0038897:12634-12653 | Msa1457450:intron | 20.0% |
| !!! | TATTGATAGTGAAATTGAAT+TGG | + | tig0038897:12750-12769 | Msa1457450:intron | 20.0% |
| !!! | AAAAAAACAAAGCACTTTTA+AGG | - | tig0038897:12902-12921 | Msa1457450:intergenic | 20.0% |
| !! | TGTGTTATAGATATAATGTT+AGG | - | tig0038897:13129-13148 | Msa1457450:intergenic | 20.0% |
| !! | AGAACTTATAAAAACAACTT+TGG | - | tig0038897:13243-13262 | Msa1457450:intergenic | 20.0% |
| !!! | AATTCCACTACTTTTTTATT+TGG | - | tig0038897:13417-13436 | Msa1457450:intergenic | 20.0% |
| !!! | AAATAAAAAAGTAGTGGAAT+TGG | + | tig0038897:13416-13435 | Msa1457450:intron | 20.0% |
| !!! | TCATTTAGATTTTGAATTGT+TGG | + | tig0038897:13443-13462 | Msa1457450:intron | 20.0% |
| !!! | AGCATTTTTCTGATATAAAA+CGG | - | tig0038897:13909-13928 | Msa1457450:intergenic | 20.0% |
| !! | ACTATAATAAATATCAGCAA+CGG | - | tig0038897:14525-14544 | Msa1457450:intergenic | 20.0% |
| !! | AGTTTCATAATTACAAATCA+TGG | + | tig0038897:14684-14703 | Msa1457450:three_prime_UTR | 20.0% |
| !!! | TTATTCATTGATGTAGTTTT+GGG | + | tig0038897:14753-14772 | Msa1457450:three_prime_UTR | 20.0% |
| !!! | AATAAAGTGATGTACATTTT+TGG | - | tig0038897:14798-14817 | Msa1457450:intergenic | 20.0% |
| !! | ATAAAATAAAAAGACCAAAC+AGG | - | tig0038897:14826-14845 | Msa1457450:intergenic | 20.0% |
| !! | GAACACATTTTTCATTTTCA+GGG | - | tig0038897:8859-8878 | Msa1457450:intergenic | 25.0% |
| !! | TGAACACATTTTTCATTTTC+AGG | - | tig0038897:8860-8879 | Msa1457450:intergenic | 25.0% |
| !!! | GTATGTATTTTTTGTGTTCA+AGG | - | tig0038897:8965-8984 | Msa1457450:intergenic | 25.0% |
| ! | AATCAATTAATTCAACCCTA+TGG | + | tig0038897:9031-9050 | Msa1457450:exon | 25.0% |
| ! | GAATATATCATGAAAAGTTG+TGG | + | tig0038897:9642-9661 | Msa1457450:CDS | 25.0% |
| ! | GAAAAGCAATATTCTTCTAA+TGG | + | tig0038897:9856-9875 | Msa1457450:CDS | 25.0% |
| ! | AAAGCAATATTCTTCTAATG+GGG | + | tig0038897:9858-9877 | Msa1457450:CDS | 25.0% |
| ! | AAATTTCAAGGAAATGATCA+TGG | - | tig0038897:10135-10154 | Msa1457450:intergenic | 25.0% |
| ! | CAAAGAAAAACAAGTTAAAC+TGG | - | tig0038897:10184-10203 | Msa1457450:intergenic | 25.0% |
| !!! | TTTTCTTTGATGTTGTTTCA+AGG | + | tig0038897:10195-10214 | Msa1457450:intron | 25.0% |
| ! | GTTCTATCAAAGATCATATT+TGG | - | tig0038897:10395-10414 | Msa1457450:intergenic | 25.0% |
| ! | AAAAGAAGAATGCACATAAT+TGG | + | tig0038897:10521-10540 | Msa1457450:intron | 25.0% |
| ! | AAAGAAGAATGCACATAATT+GGG | + | tig0038897:10522-10541 | Msa1457450:intron | 25.0% |
| !! | TATTACAATGTGGTTTTTCT+TGG | + | tig0038897:10949-10968 | Msa1457450:intron | 25.0% |
| ! | AAAACCACATTGCAATAAAA+GGG | - | tig0038897:11137-11156 | Msa1457450:intergenic | 25.0% |
| ! | AAAAACCACATTGCAATAAA+AGG | - | tig0038897:11138-11157 | Msa1457450:intergenic | 25.0% |
| ! | AATATTGGATACAGTAACAT+GGG | - | tig0038897:11182-11201 | Msa1457450:intergenic | 25.0% |
| ! | AAATATTGGATACAGTAACA+TGG | - | tig0038897:11183-11202 | Msa1457450:intergenic | 25.0% |
| ! | ACAGTGAAAAAATACAAAGT+CGG | - | tig0038897:11514-11533 | Msa1457450:intergenic | 25.0% |
| ! | ATAGACATAAGCATACTTAA+AGG | - | tig0038897:12013-12032 | Msa1457450:intergenic | 25.0% |
| !! | AAGAATATACTTTTCATCTG+CGG | + | tig0038897:12161-12180 | Msa1457450:CDS | 25.0% |
| ! | TGACTTAGAGAAAACAATTT+CGG | + | tig0038897:12196-12215 | Msa1457450:CDS | 25.0% |
| ! | AAGAAGACATTCCAAATTAA+TGG | + | tig0038897:13010-13029 | Msa1457450:CDS | 25.0% |
| ! | AATCATTAAAACTACCACAA+AGG | - | tig0038897:13385-13404 | Msa1457450:intergenic | 25.0% |
| ! | TCAACCAAATAAAAAAGTAG+TGG | + | tig0038897:13410-13429 | Msa1457450:intron | 25.0% |
| !!! | AATTTTTTCATAGTGCGATA+TGG | + | tig0038897:13686-13705 | Msa1457450:intron | 25.0% |
| ! | TATTACTCAACGAAGATTAT+TGG | + | tig0038897:14162-14181 | Msa1457450:intron | 25.0% |
| !! | GTTTTCTGTATTATAGACTA+CGG | + | tig0038897:14432-14451 | Msa1457450:intron | 25.0% |
| ! | CAAAACTACATCAATGAATA+AGG | - | tig0038897:14754-14773 | Msa1457450:intergenic | 25.0% |
| !! | CTTATTCATTGATGTAGTTT+TGG | + | tig0038897:14752-14771 | Msa1457450:three_prime_UTR | 25.0% |
| !!! | TATTCATTGATGTAGTTTTG+GGG | + | tig0038897:14754-14773 | Msa1457450:three_prime_UTR | 25.0% |
| !!! | TTTATTTTATCCAATCTCCT+CGG | + | tig0038897:14836-14855 | Msa1457450:three_prime_UTR | 25.0% |
| TAGTATTACTACTACCCTTA+TGG | - | tig0038897:9247-9266 | Msa1457450:intergenic | 30.0% | |
| CATCATAAGGAACATGATTA+GGG | - | tig0038897:9322-9341 | Msa1457450:intergenic | 30.0% | |
| ACATCATAAGGAACATGATT+AGG | - | tig0038897:9323-9342 | Msa1457450:intergenic | 30.0% | |
| TTATGATGTAACCGCTTATA+GGG | + | tig0038897:9334-9353 | Msa1457450:CDS | 30.0% | |
| AACATGTAATTGGACAAGAA+AGG | + | tig0038897:9576-9595 | Msa1457450:CDS | 30.0% | |
| ACATGTAATTGGACAAGAAA+GGG | + | tig0038897:9577-9596 | Msa1457450:CDS | 30.0% | |
| ATATCATGAAAAGTTGTGGT+TGG | + | tig0038897:9646-9665 | Msa1457450:intron | 30.0% | |
| AGTAATAACATAACATGCTG+AGG | - | tig0038897:9679-9698 | Msa1457450:intergenic | 30.0% | |
| ! | TTCTTACTATCTGGAATGTT+AGG | + | tig0038897:9765-9784 | Msa1457450:intron | 30.0% |
| TTTAAGAAAACGACGATTTC+TGG | - | tig0038897:10072-10091 | Msa1457450:intergenic | 30.0% | |
| !! | TCGTCGTTTTCTTAAATAGA+TGG | + | tig0038897:10076-10095 | Msa1457450:intron | 30.0% |
| !! | CGTCGTTTTCTTAAATAGAT+GGG | + | tig0038897:10077-10096 | Msa1457450:intron | 30.0% |
| !! | GTCGTTTTCTTAAATAGATG+GGG | + | tig0038897:10078-10097 | Msa1457450:intron | 30.0% |
| ! | TCGTTTTCTTAAATAGATGG+GGG | + | tig0038897:10079-10098 | Msa1457450:intron | 30.0% |
| AAAATTAGAGGCCAATGAAT+TGG | + | tig0038897:10367-10386 | Msa1457450:intron | 30.0% | |
| CATATTTGGATCCAATTCAT+TGG | - | tig0038897:10381-10400 | Msa1457450:intergenic | 30.0% | |
| TGATCTTTGATAGAACACTA+TGG | + | tig0038897:10399-10418 | Msa1457450:intron | 30.0% | |
| ! | ATAAGATTAGATGATGGCAA+TGG | - | tig0038897:10548-10567 | Msa1457450:intergenic | 30.0% |
| ATTGCCATCATCTAATCTTA+TGG | + | tig0038897:10547-10566 | Msa1457450:intron | 30.0% | |
| AAGTCCATAAGATTAGATGA+TGG | - | tig0038897:10554-10573 | Msa1457450:intergenic | 30.0% | |
| ! | ATAATTCCATGAGGTACTTT+CGG | - | tig0038897:10700-10719 | Msa1457450:intergenic | 30.0% |
| ! | GAATTATCACTTCCTTTTCT+AGG | + | tig0038897:10713-10732 | Msa1457450:intron | 30.0% |
| AAGCTTCATGTTTGTGTTTA+AGG | + | tig0038897:10813-10832 | Msa1457450:intron | 30.0% | |
| AACCTCTTGTGTAAAAAACA+GGG | + | tig0038897:11031-11050 | Msa1457450:intron | 30.0% | |
| ! | ACTTATTTAGAACATTCACC+TGG | + | tig0038897:11235-11254 | Msa1457450:intron | 30.0% |
| AGTTGACAAGATTACCAAAA+AGG | + | tig0038897:11460-11479 | Msa1457450:CDS | 30.0% | |
| !! | AAAATAATGGGGAACCTTTT+TGG | - | tig0038897:11477-11496 | Msa1457450:intergenic | 30.0% |
| GAAAAAATACAAAGTCGGTA+GGG | - | tig0038897:11509-11528 | Msa1457450:intergenic | 30.0% | |
| TGAAAAAATACAAAGTCGGT+AGG | - | tig0038897:11510-11529 | Msa1457450:intergenic | 30.0% | |
| AGACATCTCTACTGATATTA+AGG | - | tig0038897:11570-11589 | Msa1457450:intergenic | 30.0% | |
| !!! | TGTTCAGTTTTTTTTGGTGT+TGG | - | tig0038897:11660-11679 | Msa1457450:intergenic | 30.0% |
| TCTTCATGAATTACAGTTTC+AGG | + | tig0038897:11886-11905 | Msa1457450:intron | 30.0% | |
| ATATTCATGGAACTGATACA+TGG | + | tig0038897:11945-11964 | Msa1457450:intron | 30.0% | |
| TATTCATGGAACTGATACAT+GGG | + | tig0038897:11946-11965 | Msa1457450:intron | 30.0% | |
| ! | GCAGATGAAAAGTATATTCT+TGG | - | tig0038897:12162-12181 | Msa1457450:intergenic | 30.0% |
| ! | TGTTTTCTCTAAGTCAATGA+AGG | - | tig0038897:12192-12211 | Msa1457450:intergenic | 30.0% |
| TAGAGAAAACAATTTCGGAA+AGG | + | tig0038897:12201-12220 | Msa1457450:CDS | 30.0% | |
| ! | ACTGCTGCTATATAATTTTC+AGG | - | tig0038897:12237-12256 | Msa1457450:intergenic | 30.0% |
| !! | ATAGCAGCAGTTTTATAATG+TGG | + | tig0038897:12246-12265 | Msa1457450:intron | 30.0% |
| ! | ATTGACTGGTTATAGAAACA+CGG | - | tig0038897:12278-12297 | Msa1457450:intergenic | 30.0% |
| CAAATCCAATAGAAGAATCT+TGG | - | tig0038897:12322-12341 | Msa1457450:intergenic | 30.0% | |
| CAAGATTCTTCTATTGGATT+TGG | + | tig0038897:12320-12339 | Msa1457450:CDS | 30.0% | |
| GCAATTGCATCATCATTATT+AGG | + | tig0038897:12389-12408 | Msa1457450:CDS | 30.0% | |
| GATCAAACTTGAAATTAGCT+TGG | - | tig0038897:12468-12487 | Msa1457450:intergenic | 30.0% | |
| GGTTTAATACCTGAATTTGT+TGG | + | tig0038897:12547-12566 | Msa1457450:CDS | 30.0% | |
| !! | TAATACCTGAATTTGTTGGA+CGG | + | tig0038897:12551-12570 | Msa1457450:CDS | 30.0% |
| AACTGAAAATCAACTCATTC+AGG | + | tig0038897:12603-12622 | Msa1457450:CDS | 30.0% | |
| GATAGTGAAATTGAATTGGT+TGG | + | tig0038897:12754-12773 | Msa1457450:intron | 30.0% | |
| CTGTAGAAATTAATGGTATC+AGG | - | tig0038897:12951-12970 | Msa1457450:intergenic | 30.0% | |
| CTGATACCATTAATTTCTAC+AGG | + | tig0038897:12949-12968 | Msa1457450:intron | 30.0% | |
| GGAAACTTACTCCATTAATT+TGG | - | tig0038897:13024-13043 | Msa1457450:intergenic | 30.0% | |
| AGTGAAATGTACAAGGAATT+AGG | - | tig0038897:13055-13074 | Msa1457450:intergenic | 30.0% | |
| ! | GTTTTCATAAGCTATCATAG+AGG | + | tig0038897:13179-13198 | Msa1457450:intron | 30.0% |
| CTCAAAGAAGTTAATCCAAA+CGG | + | tig0038897:13301-13320 | Msa1457450:intron | 30.0% | |
| TCAAAGAAGTTAATCCAAAC+GGG | + | tig0038897:13302-13321 | Msa1457450:intron | 30.0% | |
| !!! | TGTGGTAGTTTTAATGATTG+AGG | + | tig0038897:13386-13405 | Msa1457450:intron | 30.0% |
| ! | AGATTTTGAATTGTTGGCAA+AGG | + | tig0038897:13449-13468 | Msa1457450:intron | 30.0% |
| ! | ATGTTGTGCATTTCATTTTC+AGG | + | tig0038897:13508-13527 | Msa1457450:intron | 30.0% |
| ! | TCAGGTGAAACTACATTTTA+CGG | + | tig0038897:13526-13545 | Msa1457450:intron | 30.0% |
| CAAGCAATGTCTAAAAATAC+TGG | + | tig0038897:13575-13594 | Msa1457450:CDS | 30.0% | |
| !!! | GGCAATAATAGAGAGTATTT+TGG | + | tig0038897:13613-13632 | Msa1457450:CDS | 30.0% |
| ! | ATAAAAGCATACCTCATACA+TGG | - | tig0038897:13645-13664 | Msa1457450:intergenic | 30.0% |
| ATAGGTTAATACACACATGT+GGG | - | tig0038897:13786-13805 | Msa1457450:intergenic | 30.0% | |
| TATAGGTTAATACACACATG+TGG | - | tig0038897:13787-13806 | Msa1457450:intergenic | 30.0% | |
| TCAGAAAAATGCTCTTCTTT+AGG | + | tig0038897:13916-13935 | Msa1457450:intron | 30.0% | |
| CAAGAAGACACTTAAATATG+AGG | - | tig0038897:14005-14024 | Msa1457450:intergenic | 30.0% | |
| CTCATATTTAAGTGTCTTCT+TGG | + | tig0038897:14003-14022 | Msa1457450:intron | 30.0% | |
| GTAATTATGAAACTGACCAT+GGG | - | tig0038897:14678-14697 | Msa1457450:intergenic | 30.0% | |
| TGTAATTATGAAACTGACCA+TGG | - | tig0038897:14679-14698 | Msa1457450:intergenic | 30.0% | |
| CATAATTACAAATCATGGTG+TGG | + | tig0038897:14689-14708 | Msa1457450:three_prime_UTR | 30.0% | |
| ! | CACTTTATTTGATTCCTGTT+TGG | + | tig0038897:14809-14828 | Msa1457450:three_prime_UTR | 30.0% |
| ! | TATTCTGAGAATCGAGTTTG+CGG | - | tig0038897:8897-8916 | Msa1457450:intergenic | 35.0% |
| !! | AACAGAACATTGATTCGTGT+GGG | - | tig0038897:8987-9006 | Msa1457450:intergenic | 35.0% |
| GTTTCGATCAAAACCTTCAA+AGG | + | tig0038897:9067-9086 | Msa1457450:CDS | 35.0% | |
| !! | TGATAAGGGGTGTTGATTAA+CGG | - | tig0038897:9179-9198 | Msa1457450:intergenic | 35.0% |
| TGAAGGAAGTGAAGTGATAA+GGG | - | tig0038897:9193-9212 | Msa1457450:intergenic | 35.0% | |
| TTGAAGGAAGTGAAGTGATA+AGG | - | tig0038897:9194-9213 | Msa1457450:intergenic | 35.0% | |
| TTGATTAGAGTCTTCGACAA+GGG | - | tig0038897:9297-9316 | Msa1457450:intergenic | 35.0% | |
| TTTGATTAGAGTCTTCGACA+AGG | - | tig0038897:9298-9317 | Msa1457450:intergenic | 35.0% | |
| CTATAAGCGGTTACATCATA+AGG | - | tig0038897:9335-9354 | Msa1457450:intergenic | 35.0% | |
| CTTATGATGTAACCGCTTAT+AGG | + | tig0038897:9333-9352 | Msa1457450:CDS | 35.0% | |
| AGAAACAAGAACCCTATAAG+CGG | - | tig0038897:9348-9367 | Msa1457450:intergenic | 35.0% | |
| !! | AATTATGATGTTTCTGGTGG+TGG | + | tig0038897:9425-9444 | Msa1457450:CDS | 35.0% |
| ! | GAATTCGAAAGATTGGTGTT+GGG | + | tig0038897:9493-9512 | Msa1457450:CDS | 35.0% |
| !! | AATTCGAAAGATTGGTGTTG+GGG | + | tig0038897:9494-9513 | Msa1457450:CDS | 35.0% |
| !! | TTACAAATCTCCTTTGGAGT+AGG | - | tig0038897:9545-9564 | Msa1457450:intergenic | 35.0% |
| ACTCCAAAGGAGATTTGTAA+AGG | + | tig0038897:9545-9564 | Msa1457450:CDS | 35.0% | |
| CTCCAAAGGAGATTTGTAAA+GGG | + | tig0038897:9546-9565 | Msa1457450:CDS | 35.0% | |
| GGGCTTGATAAACATGTAAT+TGG | + | tig0038897:9566-9585 | Msa1457450:CDS | 35.0% | |
| GCAGGAGATTCAAATATTGA+TGG | + | tig0038897:9791-9810 | Msa1457450:CDS | 35.0% | |
| ! | TTGAATTTTGTGCTCAGCAT+TGG | + | tig0038897:10033-10052 | Msa1457450:intron | 35.0% |
| ! | TTTTCTTAAATAGATGGGGG+AGG | + | tig0038897:10082-10101 | Msa1457450:intron | 35.0% |
| ! | GAGGCATTAACGAAATTTCA+AGG | - | tig0038897:10147-10166 | Msa1457450:intergenic | 35.0% |
| !! | TTTGATGTTGTTTCAAGGAC+AGG | + | tig0038897:10200-10219 | Msa1457450:intron | 35.0% |
| !! | TTGATGTTGTTTCAAGGACA+GGG | + | tig0038897:10201-10220 | Msa1457450:intron | 35.0% |
| AACATTTACAAACCTAGCCA+AGG | - | tig0038897:10246-10265 | Msa1457450:intergenic | 35.0% | |
| GTTGCATCTGCAATAACAAA+GGG | - | tig0038897:10269-10288 | Msa1457450:intergenic | 35.0% | |
| TGGAAAGTCTTTCAATAGAG+GGG | - | tig0038897:10497-10516 | Msa1457450:intergenic | 35.0% | |
| CTGGAAAGTCTTTCAATAGA+GGG | - | tig0038897:10498-10517 | Msa1457450:intergenic | 35.0% | |
| !!! | TGTGCATTCTTCTTTTTTCC+TGG | - | tig0038897:10517-10536 | Msa1457450:intergenic | 35.0% |
| AAGGAAGTGATAATTCCATG+AGG | - | tig0038897:10709-10728 | Msa1457450:intergenic | 35.0% | |
| ! | TTATCACTTCCTTTTCTAGG+TGG | + | tig0038897:10716-10735 | Msa1457450:intron | 35.0% |
| AAATTCCAACCACCTAGAAA+AGG | - | tig0038897:10728-10747 | Msa1457450:intergenic | 35.0% | |
| CATATTATACAAGCTCCTTG+CGG | + | tig0038897:10892-10911 | Msa1457450:intron | 35.0% | |
| GTCACAAATTATTTACCGCA+AGG | - | tig0038897:10910-10929 | Msa1457450:intergenic | 35.0% | |
| TAAAGTTGTTGTCATGTGAC+TGG | + | tig0038897:10981-11000 | Msa1457450:intron | 35.0% | |
| CAACCTCTTGTGTAAAAAAC+AGG | + | tig0038897:11030-11049 | Msa1457450:intron | 35.0% | |
| !!! | TACCCTGTTTTTTACACAAG+AGG | - | tig0038897:11036-11055 | Msa1457450:intergenic | 35.0% |
| CTTGTGTAAAAAACAGGGTA+AGG | + | tig0038897:11036-11055 | Msa1457450:intron | 35.0% | |
| TTGCGTACAATACACCAAAA+TGG | + | tig0038897:11059-11078 | Msa1457450:intron | 35.0% | |
| GTACAATACACCAAAATGGT+GGG | + | tig0038897:11063-11082 | Msa1457450:intron | 35.0% | |
| GATGAATCACACATTAAACC+AGG | - | tig0038897:11256-11275 | Msa1457450:intergenic | 35.0% | |
| TCATGTAACTAGCTACTCTT+CGG | + | tig0038897:11310-11329 | Msa1457450:intron | 35.0% | |
| AAATCACTTCTCGTCATTTC+AGG | + | tig0038897:11537-11556 | Msa1457450:intron | 35.0% | |
| TCTACTGATATTAAGGCTCT+CGG | - | tig0038897:11563-11582 | Msa1457450:intergenic | 35.0% | |
| AATATCAGTAGAGATGTCTC+TGG | + | tig0038897:11571-11590 | Msa1457450:CDS | 35.0% | |
| ACCAAAAAAAACTGAACAGC+TGG | + | tig0038897:11662-11681 | Msa1457450:intron | 35.0% | |
| !!! | TCCAGCTGTTCAGTTTTTTT+TGG | - | tig0038897:11666-11685 | Msa1457450:intergenic | 35.0% |
| GGAACAAGATCAACATACAA+AGG | - | tig0038897:11778-11797 | Msa1457450:intergenic | 35.0% | |
| ! | ACAATCTGGATTGGAAAGAA+TGG | - | tig0038897:11799-11818 | Msa1457450:intergenic | 35.0% |
| TTTATTTGCTTGTAGCCTGT+AGG | + | tig0038897:11911-11930 | Msa1457450:intron | 35.0% | |
| TTATTTGCTTGTAGCCTGTA+GGG | + | tig0038897:11912-11931 | Msa1457450:intron | 35.0% | |
| ! | AATATACTTTTCATCTGCGG+AGG | + | tig0038897:12164-12183 | Msa1457450:CDS | 35.0% |
| AGCAGTGATCTTATAGCATA+TGG | + | tig0038897:12526-12545 | Msa1457450:CDS | 35.0% | |
| GAAAATCAACTCATTCAGGT+AGG | + | tig0038897:12607-12626 | Msa1457450:intron | 35.0% | |
| TTGAATGAAGTAGTCAGTAG+TGG | + | tig0038897:12713-12732 | Msa1457450:intron | 35.0% | |
| TGAATGAAGTAGTCAGTAGT+GGG | + | tig0038897:12714-12733 | Msa1457450:intron | 35.0% | |
| ! | TGAAATTGAATTGGTTGGTG+AGG | + | tig0038897:12759-12778 | Msa1457450:intron | 35.0% |
| CACTCTAACTGAATGAAGAA+GGG | - | tig0038897:12858-12877 | Msa1457450:intergenic | 35.0% | |
| ACACTCTAACTGAATGAAGA+AGG | - | tig0038897:12859-12878 | Msa1457450:intergenic | 35.0% | |
| TGAGGACCTGTAGAAATTAA+TGG | - | tig0038897:12958-12977 | Msa1457450:intergenic | 35.0% | |
| TAATGGAGTAAGTTTCCACA+AGG | + | tig0038897:13027-13046 | Msa1457450:intron | 35.0% | |
| TCTCTCCAATAGTTTAAGCA+CGG | + | tig0038897:13087-13106 | Msa1457450:intron | 35.0% | |
| AAGCTATCATAGAGGTCTTA+AGG | + | tig0038897:13187-13206 | Msa1457450:intron | 35.0% | |
| ! | AAGCACTTGTTACACTGTTT+AGG | - | tig0038897:13266-13285 | Msa1457450:intergenic | 35.0% |
| CTTGTTTGTTTATGCCTTTG+TGG | + | tig0038897:13368-13387 | Msa1457450:intron | 35.0% | |
| TGTCTAAAAATACTGGTGCT+CGG | + | tig0038897:13582-13601 | Msa1457450:CDS | 35.0% | |
| GACTAGACATAATTACCCAT+CGG | + | tig0038897:13751-13770 | Msa1457450:intron | 35.0% | |
| ! | AAACTCATGGTTTGTAGGTA+GGG | - | tig0038897:13867-13886 | Msa1457450:intergenic | 35.0% |
| ! | TAAACTCATGGTTTGTAGGT+AGG | - | tig0038897:13868-13887 | Msa1457450:intergenic | 35.0% |
| ! | CAAGTAAACTCATGGTTTGT+AGG | - | tig0038897:13872-13891 | Msa1457450:intergenic | 35.0% |
| TTAATGCCCTGCTTCAATAT+TGG | - | tig0038897:13954-13973 | Msa1457450:intergenic | 35.0% | |
| ACTTAAATATGAGGATGAGG+AGG | - | tig0038897:13996-14015 | Msa1457450:intergenic | 35.0% | |
| GACACTTAAATATGAGGATG+AGG | - | tig0038897:13999-14018 | Msa1457450:intergenic | 35.0% | |
| GTAATATGTCCTTAGTGTAG+TGG | - | tig0038897:14148-14167 | Msa1457450:intergenic | 35.0% | |
| !! | ACGAAGATTATTGGCTTGAT+TGG | + | tig0038897:14171-14190 | Msa1457450:intron | 35.0% |
| !! | CGAAGATTATTGGCTTGATT+GGG | + | tig0038897:14172-14191 | Msa1457450:intron | 35.0% |
| ATTCGATCGTTATCTTTCCA+AGG | + | tig0038897:14323-14342 | Msa1457450:CDS | 35.0% | |
| TATCTTTCCAAGGAGAAGAA+CGG | + | tig0038897:14333-14352 | Msa1457450:CDS | 35.0% | |
| TTCTGTATTATAGACTACGG+AGG | + | tig0038897:14435-14454 | Msa1457450:intron | 35.0% | |
| ! | TAGATTCAGATTTTCCCATG+TGG | + | tig0038897:14599-14618 | Msa1457450:three_prime_UTR | 35.0% |
| TAGAAAACGTATGCGACATT+TGG | - | tig0038897:14719-14738 | Msa1457450:intergenic | 35.0% | |
| !! | CAACATTGCAGTTTCGAGTT+TGG | + | tig0038897:8776-8795 | Msa1457450:five_prime_UTR | 40.0% |
| !! | GAACAGAACATTGATTCGTG+TGG | - | tig0038897:8988-9007 | Msa1457450:intergenic | 40.0% |
| !!! | AGGGTTGCTTTTTCCTTTGA+AGG | - | tig0038897:9083-9102 | Msa1457450:intergenic | 40.0% |
| GAAGGAAGTGAAGTGATAAG+GGG | - | tig0038897:9192-9211 | Msa1457450:intergenic | 40.0% | |
| AACTTCAGGAGGATCAACAA+AGG | - | tig0038897:9372-9391 | Msa1457450:intergenic | 40.0% | |
| TTGTTGATCCTCCTGAAGTT+TGG | + | tig0038897:9372-9391 | Msa1457450:CDS | 40.0% | |
| CCAGAAACATCATAATTCCC+AGG | - | tig0038897:9422-9441 | Msa1457450:intergenic | 40.0% | |
| CCTGGGAATTATGATGTTTC+TGG | + | tig0038897:9419-9438 | Msa1457450:CDS | 40.0% | |
| !! | GGGAATTATGATGTTTCTGG+TGG | + | tig0038897:9422-9441 | Msa1457450:CDS | 40.0% |
| ATTCGGGGAATTCGAAAGAT+TGG | + | tig0038897:9486-9505 | Msa1457450:CDS | 40.0% | |
| GGAATTCGAAAGATTGGTGT+TGG | + | tig0038897:9492-9511 | Msa1457450:CDS | 40.0% | |
| ! | AGGTAGTTTTCCTACTCCAA+AGG | + | tig0038897:9532-9551 | Msa1457450:CDS | 40.0% |
| AGCCCTTTACAAATCTCCTT+TGG | - | tig0038897:9551-9570 | Msa1457450:intergenic | 40.0% | |
| CGTTAATGCCTCATTTCTCA+TGG | + | tig0038897:10155-10174 | Msa1457450:intron | 40.0% | |
| GACATTACTTGCCAAAACCT+TGG | + | tig0038897:10226-10245 | Msa1457450:CDS | 40.0% | |
| ! | TACAAACCTAGCCAAGGTTT+TGG | - | tig0038897:10240-10259 | Msa1457450:intergenic | 40.0% |
| GGTTGCATCTGCAATAACAA+AGG | - | tig0038897:10270-10289 | Msa1457450:intergenic | 40.0% | |
| CCTGGAAAGTCTTTCAATAG+AGG | - | tig0038897:10499-10518 | Msa1457450:intergenic | 40.0% | |
| CCTCTATTGAAAGACTTTCC+AGG | + | tig0038897:10496-10515 | Msa1457450:intron | 40.0% | |
| TGGTTATGTTGGAGAAGATG+TGG | + | tig0038897:10865-10884 | Msa1457450:intron | 40.0% | |
| CGCAAGGAGCTTGTATAATA+TGG | - | tig0038897:10894-10913 | Msa1457450:intergenic | 40.0% | |
| ! | TTACACAAGAGGTTGTTTCC+AGG | - | tig0038897:11025-11044 | Msa1457450:intergenic | 40.0% |
| CGTACAATACACCAAAATGG+TGG | + | tig0038897:11062-11081 | Msa1457450:intron | 40.0% | |
| ! | GTTGCCCTTTTATTGCAATG+TGG | + | tig0038897:11130-11149 | Msa1457450:intron | 40.0% |
| TCAGGCTGCAGATTATAATG+TGG | + | tig0038897:11403-11422 | Msa1457450:intron | 40.0% | |
| GCATTACTGAAGATGCTTGA+GGG | + | tig0038897:11610-11629 | Msa1457450:CDS | 40.0% | |
| GGAACATTGACAATCTGGAT+TGG | - | tig0038897:11808-11827 | Msa1457450:intergenic | 40.0% | |
| ATTGTCAATGTTCCCGAGAA+GGG | + | tig0038897:11814-11833 | Msa1457450:CDS | 40.0% | |
| ACCTGAATATTGTCACCTCT+CGG | - | tig0038897:11853-11872 | Msa1457450:intergenic | 40.0% | |
| TATTTGCTTGTAGCCTGTAG+GGG | + | tig0038897:11913-11932 | Msa1457450:intron | 40.0% | |
| ATATATCTGATAGCCCCTAC+AGG | - | tig0038897:11929-11948 | Msa1457450:intergenic | 40.0% | |
| GGGGCTATCAGATATATTCA+TGG | + | tig0038897:11932-11951 | Msa1457450:intron | 40.0% | |
| ATCATTGTATCTGTGCACTC+TGG | + | tig0038897:12037-12056 | Msa1457450:intron | 40.0% | |
| TAATTGCAAAGAGCTGTCTG+TGG | + | tig0038897:12091-12110 | Msa1457450:intron | 40.0% | |
| AAGGTGATCAACAGATTGAC+TGG | - | tig0038897:12292-12311 | Msa1457450:intergenic | 40.0% | |
| CAATCTGTTGATCACCTTTC+AGG | + | tig0038897:12294-12313 | Msa1457450:intron | 40.0% | |
| GACCAATCTTGTAAGCATAC+TGG | + | tig0038897:12429-12448 | Msa1457450:intron | 40.0% | |
| AGCCAGTATGCTTACAAGAT+TGG | - | tig0038897:12434-12453 | Msa1457450:intergenic | 40.0% | |
| GCTGACAGACTAACAAGAAT+AGG | - | tig0038897:12580-12599 | Msa1457450:intergenic | 40.0% | |
| !! | TGCTTCTCTAAAGCACTCTT+TGG | - | tig0038897:12986-13005 | Msa1457450:intergenic | 40.0% |
| TGTCAGCAGTGAAATGTACA+AGG | - | tig0038897:13062-13081 | Msa1457450:intergenic | 40.0% | |
| CTCTCCAATAGTTTAAGCAC+GGG | + | tig0038897:13088-13107 | Msa1457450:intron | 40.0% | |
| ATTGTTGGCAAAGGCTTTCT+TGG | + | tig0038897:13458-13477 | Msa1457450:intron | 40.0% | |
| TTGTTGGCAAAGGCTTTCTT+GGG | + | tig0038897:13459-13478 | Msa1457450:intron | 40.0% | |
| GTCTAAAAATACTGGTGCTC+GGG | + | tig0038897:13583-13602 | Msa1457450:CDS | 40.0% | |
| TCTAAAAATACTGGTGCTCG+GGG | + | tig0038897:13584-13603 | Msa1457450:CDS | 40.0% | |
| TTTGGTAGATGCCATGTATG+AGG | + | tig0038897:13631-13650 | Msa1457450:CDS | 40.0% | |
| ! | AACTCATGGTTTGTAGGTAG+GGG | - | tig0038897:13866-13885 | Msa1457450:intergenic | 40.0% |
| GCAAACAGCAAGTAAACTCA+TGG | - | tig0038897:13880-13899 | Msa1457450:intergenic | 40.0% | |
| !! | TGAGTTTACTTGCTGTTTGC+TGG | + | tig0038897:13880-13899 | Msa1457450:intron | 40.0% |
| ! | TCTTCTTTAGGTTCCACAAC+TGG | + | tig0038897:13928-13947 | Msa1457450:intron | 40.0% |
| AACTGGCCAATATTGAAGCA+GGG | + | tig0038897:13945-13964 | Msa1457450:intron | 40.0% | |
| ACCTAACTTCCACTACACTA+AGG | + | tig0038897:14136-14155 | Msa1457450:intron | 40.0% | |
| ! | TCCTTAGTGTAGTGGAAGTT+AGG | - | tig0038897:14140-14159 | Msa1457450:intergenic | 40.0% |
| !! | AGAGGCGCTAAAATCCTTTA+TGG | + | tig0038897:14291-14310 | Msa1457450:CDS | 40.0% |
| CGCTAAAATCCTTTATGGCA+GGG | + | tig0038897:14296-14315 | Msa1457450:CDS | 40.0% | |
| GCTAAAATCCTTTATGGCAG+GGG | + | tig0038897:14297-14316 | Msa1457450:CDS | 40.0% | |
| ATCTTTCCAAGGAGAAGAAC+GGG | + | tig0038897:14334-14353 | Msa1457450:CDS | 40.0% | |
| TTATAGACTACGGAGGTTTC+TGG | + | tig0038897:14442-14461 | Msa1457450:intron | 40.0% | |
| ! | TCAGATTTTCCCATGTGGAT+TGG | + | tig0038897:14604-14623 | Msa1457450:three_prime_UTR | 40.0% |
| ! | CAGATTTTCCCATGTGGATT+GGG | + | tig0038897:14605-14624 | Msa1457450:three_prime_UTR | 40.0% |
| GATTTCAACCCAATCCACAT+GGG | - | tig0038897:14616-14635 | Msa1457450:intergenic | 40.0% | |
| TGATTTCAACCCAATCCACA+TGG | - | tig0038897:14617-14636 | Msa1457450:intergenic | 40.0% | |
| AGTTCAATAGTGACTTCCCA+TGG | + | tig0038897:14659-14678 | Msa1457450:three_prime_UTR | 40.0% | |
| !!! | ATGTAGTTTTGGGGCAATAC+TGG | + | tig0038897:14763-14782 | Msa1457450:three_prime_UTR | 40.0% |
| TAAGTTACGTCAAATGTCCG+AGG | - | tig0038897:14856-14875 | Msa1457450:intergenic | 40.0% | |
| GCGTAATTGAGATAACGCGA+GGG | - | tig0038897:9102-9121 | Msa1457450:intergenic | 45.0% | |
| AGCGTAATTGAGATAACGCG+AGG | - | tig0038897:9103-9122 | Msa1457450:intergenic | 45.0% | |
| GCATTCAATTACACACACGC+TGG | + | tig0038897:9128-9147 | Msa1457450:CDS | 45.0% | |
| TTGATTAACGGTGAACGTGG+TGG | - | tig0038897:9167-9186 | Msa1457450:intergenic | 45.0% | |
| !! | GTGTTGATTAACGGTGAACG+TGG | - | tig0038897:9170-9189 | Msa1457450:intergenic | 45.0% |
| ! | GTGGAATTGTTGTTCGTCCT+GGG | + | tig0038897:9402-9421 | Msa1457450:CDS | 45.0% |
| !! | TATGATGTTTCTGGTGGTGG+TGG | + | tig0038897:9428-9447 | Msa1457450:CDS | 45.0% |
| TTTCGAATTCCCCGAATCAC+CGG | - | tig0038897:9483-9502 | Msa1457450:intergenic | 45.0% | |
| TGTTGGGGTGGGTCTAATAT+GGG | + | tig0038897:9509-9528 | Msa1457450:CDS | 45.0% | |
| ! | ATCTGGAATGTTAGGCATGC+AGG | + | tig0038897:9773-9792 | Msa1457450:intron | 45.0% |
| GTCGTCATCATCAACAACGT+CGG | - | tig0038897:9822-9841 | Msa1457450:intergenic | 45.0% | |
| ATTCTTCTAATGGGGCCAAC+AGG | + | tig0038897:9866-9885 | Msa1457450:CDS | 45.0% | |
| AAGTACGTCGAGAGTGGAAA+TGG | - | tig0038897:9912-9931 | Msa1457450:intergenic | 45.0% | |
| TTCCACTCTCGACGTACTTA+TGG | + | tig0038897:9913-9932 | Msa1457450:intron | 45.0% | |
| AACCATAAGTACGTCGAGAG+TGG | - | tig0038897:9918-9937 | Msa1457450:intergenic | 45.0% | |
| ACTGGTTGCCATGAGAAATG+AGG | - | tig0038897:10166-10185 | Msa1457450:intergenic | 45.0% | |
| TACTTGCCAAAACCTTGGCT+AGG | + | tig0038897:10231-10250 | Msa1457450:CDS | 45.0% | |
| CTTATCCCACTAAGTGGAGT+CGG | - | tig0038897:10444-10463 | Msa1457450:intergenic | 45.0% | |
| !! | AAAGCACCGAAAGTACCTCA+TGG | + | tig0038897:10691-10710 | Msa1457450:intron | 45.0% |
| ! | CACTTCCTTTTCTAGGTGGT+TGG | + | tig0038897:10720-10739 | Msa1457450:intron | 45.0% |
| GTTGTTGTCATGTGACTGGA+AGG | + | tig0038897:10985-11004 | Msa1457450:intron | 45.0% | |
| CAGTAACATGGGTCGTGTTT+GGG | - | tig0038897:11171-11190 | Msa1457450:intergenic | 45.0% | |
| ACAGTAACATGGGTCGTGTT+TGG | - | tig0038897:11172-11191 | Msa1457450:intergenic | 45.0% | |
| AGTAGAGATGTCTCTGGTGA+AGG | + | tig0038897:11577-11596 | Msa1457450:CDS | 45.0% | |
| GGCATTACTGAAGATGCTTG+AGG | + | tig0038897:11609-11628 | Msa1457450:CDS | 45.0% | |
| ACTGAAGATGCTTGAGGGAA+CGG | + | tig0038897:11615-11634 | Msa1457450:CDS | 45.0% | |
| TCTCGGGAACATTGACAATC+TGG | - | tig0038897:11813-11832 | Msa1457450:intergenic | 45.0% | |
| GATTGTCAATGTTCCCGAGA+AGG | + | tig0038897:11813-11832 | Msa1457450:intron | 45.0% | |
| TCCGAGAGGTGACAATATTC+AGG | + | tig0038897:11849-11868 | Msa1457450:CDS | 45.0% | |
| TGTATCTGTGCACTCTGGAT+TGG | + | tig0038897:12042-12061 | Msa1457450:intron | 45.0% | |
| AGGCGCCAAGATTCTTCTAT+TGG | + | tig0038897:12314-12333 | Msa1457450:intron | 45.0% | |
| ACCTGTACGTGCAAAGATGA+AGG | + | tig0038897:12346-12365 | Msa1457450:CDS | 45.0% | |
| GGAAACCGTCCAACAAATTC+AGG | - | tig0038897:12559-12578 | Msa1457450:intergenic | 45.0% | |
| !! | TTGGTTGGTGAGGAATTCAG+AGG | + | tig0038897:12769-12788 | Msa1457450:intron | 45.0% |
| !! | TGGTTGGTGAGGAATTCAGA+GGG | + | tig0038897:12770-12789 | Msa1457450:intron | 45.0% |
| TCTCAGTGTGCAACAGCATT+CGG | + | tig0038897:12802-12821 | Msa1457450:intron | 45.0% | |
| !! | AAGCACTCTTTGGTTCTGTG+AGG | - | tig0038897:12976-12995 | Msa1457450:intergenic | 45.0% |
| ACAAGGAATTAGGAGCCTTG+TGG | - | tig0038897:13045-13064 | Msa1457450:intergenic | 45.0% | |
| GCTTCCCGTGCTTAAACTAT+TGG | - | tig0038897:13095-13114 | Msa1457450:intergenic | 45.0% | |
| ! | AGTTAATCCAAACGGGCTCT+AGG | + | tig0038897:13309-13328 | Msa1457450:intron | 45.0% |
| AGGCTTTCTTGGGATGGAAA+TGG | + | tig0038897:13469-13488 | Msa1457450:intron | 45.0% | |
| CATAGTGCGATATGGAGTGA+AGG | + | tig0038897:13694-13713 | Msa1457450:intron | 45.0% | |
| !! | GTTTACTTGCTGTTTGCTGG+TGG | + | tig0038897:13883-13902 | Msa1457450:intron | 45.0% |
| GCTTCAATATTGGCCAGTTG+TGG | - | tig0038897:13944-13963 | Msa1457450:intergenic | 45.0% | |
| CAACTGGCCAATATTGAAGC+AGG | + | tig0038897:13944-13963 | Msa1457450:intron | 45.0% | |
| CAGATACCCGATATCAGAAC+AGG | + | tig0038897:14207-14226 | Msa1457450:intron | 45.0% | |
| ATCGTCGCCTGTTCTGATAT+CGG | - | tig0038897:14217-14236 | Msa1457450:intergenic | 45.0% | |
| ! | GTTGTTGATGAAGACTCCGT+TGG | + | tig0038897:14252-14271 | Msa1457450:CDS | 45.0% |
| GCGCTAAAATCCTTTATGGC+AGG | + | tig0038897:14295-14314 | Msa1457450:CDS | 45.0% | |
| TGATTACATGCTGGCCACAA+TGG | - | tig0038897:14500-14519 | Msa1457450:intergenic | 45.0% | |
| GCAACGGTTTGATTACATGC+TGG | - | tig0038897:14509-14528 | Msa1457450:intergenic | 45.0% | |
| !!! | TAGTTTTGGGGCAATACTGG+TGG | + | tig0038897:14766-14785 | Msa1457450:three_prime_UTR | 45.0% |
| !! | TTTAAATAAACATAAAATAT+AGG | - | tig0038897:13804-13823 | Msa1457450:intergenic | 5.0% |
| !!! | ATTTGTTAAAATAATATAAA+GGG | + | tig0038897:14575-14594 | Msa1457450:three_prime_UTR | 5.0% |
| AGAATCGAGTTTGCGGTTGC+GGG | - | tig0038897:8890-8909 | Msa1457450:intergenic | 50.0% | |
| GAGAATCGAGTTTGCGGTTG+CGG | - | tig0038897:8891-8910 | Msa1457450:intergenic | 50.0% | |
| TTCAAACCCCTTTCTCTCCG+CGG | + | tig0038897:9209-9228 | Msa1457450:CDS | 50.0% | |
| GGCGGCGATTTCATCCATAA+GGG | + | tig0038897:9230-9249 | Msa1457450:CDS | 50.0% | |
| TTGGAAGTGGAGGCAGTAGA+AGG | - | tig0038897:9272-9291 | Msa1457450:intergenic | 50.0% | |
| !! | TTCGACAAGGGTGTTGGAAG+TGG | - | tig0038897:9285-9304 | Msa1457450:intergenic | 50.0% |
| ! | AGAGTCTTCGACAAGGGTGT+TGG | - | tig0038897:9291-9310 | Msa1457450:intergenic | 50.0% |
| GATCCTCCTGAAGTTTGGTC+TGG | + | tig0038897:9377-9396 | Msa1457450:CDS | 50.0% | |
| ! | GGTGGAATTGTTGTTCGTCC+TGG | + | tig0038897:9401-9420 | Msa1457450:CDS | 50.0% |
| !! | TCGAAAGATTGGTGTTGGGG+TGG | + | tig0038897:9497-9516 | Msa1457450:CDS | 50.0% |
| !! | CGAAAGATTGGTGTTGGGGT+GGG | + | tig0038897:9498-9517 | Msa1457450:CDS | 50.0% |
| GTGTTGGGGTGGGTCTAATA+TGG | + | tig0038897:9508-9527 | Msa1457450:CDS | 50.0% | |
| TGGACAAGAAAGGGCCAAGA+AGG | + | tig0038897:9586-9605 | Msa1457450:CDS | 50.0% | |
| TGCCACAGATAGCACCTTCT+TGG | - | tig0038897:9603-9622 | Msa1457450:intergenic | 50.0% | |
| GGCCAACAGGATCAGGTAAA+CGG | + | tig0038897:9879-9898 | Msa1457450:intron | 50.0% | |
| GCCAACAGGATCAGGTAAAC+GGG | + | tig0038897:9880-9899 | Msa1457450:intron | 50.0% | |
| ACCCGTTTACCTGATCCTGT+TGG | - | tig0038897:9884-9903 | Msa1457450:intergenic | 50.0% | |
| ATGGGGGAGGCAATTGAGTT+TGG | + | tig0038897:10095-10114 | Msa1457450:intron | 50.0% | |
| TGGGGGAGGCAATTGAGTTT+GGG | + | tig0038897:10096-10115 | Msa1457450:intron | 50.0% | |
| AGATGCAACCACACTCACTC+AGG | + | tig0038897:10280-10299 | Msa1457450:CDS | 50.0% | |
| ! | CTAACTTGCCTGAGTGAGTG+TGG | - | tig0038897:10291-10310 | Msa1457450:intergenic | 50.0% |
| ACTAAGTGGAGTCGGCTACA+TGG | - | tig0038897:10436-10455 | Msa1457450:intergenic | 50.0% | |
| ! | ATGTAGCCGACTCCACTTAG+TGG | + | tig0038897:10435-10454 | Msa1457450:intron | 50.0% |
| ! | TGTAGCCGACTCCACTTAGT+GGG | + | tig0038897:10436-10455 | Msa1457450:intron | 50.0% |
| CGACTCCACTTAGTGGGATA+AGG | + | tig0038897:10442-10461 | Msa1457450:intron | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | tig0038897:10450-10469 | Msa1457450:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | tig0038897:10447-10466 | Msa1457450:intron | 50.0% | |
| ACTCTAACATTGCCCCTTGC+AGG | + | tig0038897:10841-10860 | Msa1457450:CDS | 50.0% | |
| CAACATAACCAGCCTGCAAG+GGG | - | tig0038897:10856-10875 | Msa1457450:intergenic | 50.0% | |
| CCAACATAACCAGCCTGCAA+GGG | - | tig0038897:10857-10876 | Msa1457450:intergenic | 50.0% | |
| TCCAACATAACCAGCCTGCA+AGG | - | tig0038897:10858-10877 | Msa1457450:intergenic | 50.0% | |
| ! | GTGGTTTTTCTTGGCGCAAC+TGG | + | tig0038897:10958-10977 | Msa1457450:intron | 50.0% |
| TCATGTGACTGGAAGGTCAC+AGG | + | tig0038897:10992-11011 | Msa1457450:intron | 50.0% | |
| AAGGTCACAGGTTCAAGTCC+TGG | + | tig0038897:11004-11023 | Msa1457450:intron | 50.0% | |
| !! | GGTCGTGTTTGGGTTGTCTA+AGG | - | tig0038897:11161-11180 | Msa1457450:intergenic | 50.0% |
| TGTCACCTCTCGGATGCTTT+CGG | - | tig0038897:11843-11862 | Msa1457450:intergenic | 50.0% | |
| GAAGAATCTTGGCGCCTGAA+AGG | - | tig0038897:12311-12330 | Msa1457450:intergenic | 50.0% | |
| GCCTTCATCTTTGCACGTAC+AGG | - | tig0038897:12350-12369 | Msa1457450:intergenic | 50.0% | |
| GTACGTGCAAAGATGAAGGC+TGG | + | tig0038897:12350-12369 | Msa1457450:CDS | 50.0% | |
| TGTGCAACAGCATTCGGATC+TGG | + | tig0038897:12808-12827 | Msa1457450:intron | 50.0% | |
| !! | CAAACGGGCTCTAGGTCTAT+GGG | + | tig0038897:13317-13336 | Msa1457450:intron | 50.0% |
| TGGCAAAGGCTTTCTTGGGA+TGG | + | tig0038897:13463-13482 | Msa1457450:intron | 50.0% | |
| ATACTGGTGCTCGGGGATTA+CGG | + | tig0038897:13591-13610 | Msa1457450:CDS | 50.0% | |
| AAGGTGTAGCCTCTGATCAG+AGG | + | tig0038897:13713-13732 | Msa1457450:intron | 50.0% | |
| AGGTGTAGCCTCTGATCAGA+GGG | + | tig0038897:13714-13733 | Msa1457450:intron | 50.0% | |
| GTTATGCACCCTCTGATCAG+AGG | - | tig0038897:13725-13744 | Msa1457450:intergenic | 50.0% | |
| TCGTCGCCTGTTCTGATATC+GGG | - | tig0038897:14216-14235 | Msa1457450:intergenic | 50.0% | |
| ! | GTTGATGAAGACTCCGTTGG+AGG | + | tig0038897:14255-14274 | Msa1457450:CDS | 50.0% |
| TTCCAAGGAGAAGAACGGGT+CGG | + | tig0038897:14338-14357 | Msa1457450:CDS | 50.0% | |
| ! | TAGACTACGGAGGTTTCTGG+TGG | + | tig0038897:14445-14464 | Msa1457450:intron | 50.0% |
| GACAGAGCTTCCTTCCATTG+TGG | + | tig0038897:14483-14502 | Msa1457450:CDS | 50.0% | |
| TACATGCTGGCCACAATGGA+AGG | - | tig0038897:14496-14515 | Msa1457450:intergenic | 50.0% | |
| ! | TTTGGGGCAATACTGGTGGA+AGG | + | tig0038897:14770-14789 | Msa1457450:three_prime_UTR | 50.0% |
| CGTCAAATGTCCGAGGAGAT+TGG | - | tig0038897:14849-14868 | Msa1457450:intergenic | 50.0% | |
| GCGGAGAGAAAGGGGTTTGA+AGG | - | tig0038897:9210-9229 | Msa1457450:intergenic | 55.0% | |
| TATGGATGAAATCGCCGCCG+CGG | - | tig0038897:9229-9248 | Msa1457450:intergenic | 55.0% | |
| CGGCGGCGATTTCATCCATA+AGG | + | tig0038897:9229-9248 | Msa1457450:CDS | 55.0% | |
| !! | GACAAGGGTGTTGGAAGTGG+AGG | - | tig0038897:9282-9301 | Msa1457450:intergenic | 55.0% |
| CCACCAGACCAAACTTCAGG+AGG | - | tig0038897:9383-9402 | Msa1457450:intergenic | 55.0% | |
| CCTCCTGAAGTTTGGTCTGG+TGG | + | tig0038897:9380-9399 | Msa1457450:CDS | 55.0% | |
| CCACCACCAGACCAAACTTC+AGG | - | tig0038897:9386-9405 | Msa1457450:intergenic | 55.0% | |
| CCTGAAGTTTGGTCTGGTGG+TGG | + | tig0038897:9383-9402 | Msa1457450:CDS | 55.0% | |
| !! | GATGTTTCTGGTGGTGGTGG+TGG | + | tig0038897:9431-9450 | Msa1457450:CDS | 55.0% |
| TGCTGCTAGCTCCGGTGATT+CGG | + | tig0038897:9469-9488 | Msa1457450:CDS | 55.0% | |
| TGGGGTGGGTCTAATATGGG+AGG | + | tig0038897:9512-9531 | Msa1457450:CDS | 55.0% | |
| !! | GGCCAAGAAGGTGCTATCTG+TGG | + | tig0038897:9598-9617 | Msa1457450:CDS | 55.0% |
| CTAATGGGGCCAACAGGATC+AGG | + | tig0038897:9872-9891 | Msa1457450:CDS | 55.0% | |
| TAACATTGCCCCTTGCAGGC+TGG | + | tig0038897:10845-10864 | Msa1457450:CDS | 55.0% | |
| ! | CCCTTGCAGGCTGGTTATGT+TGG | + | tig0038897:10854-10873 | Msa1457450:intron | 55.0% |
| ! | AAAATGGTGGGACCCCTTCC+CGG | + | tig0038897:11075-11094 | Msa1457450:intron | 55.0% |
| CTAAAGCTCCCGCATACGCA+GGG | - | tig0038897:11102-11121 | Msa1457450:intergenic | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | - | tig0038897:11103-11122 | Msa1457450:intergenic | 55.0% | |
| ! | TGCGGGAGCTTTAGTGCACA+AGG | + | tig0038897:11108-11127 | Msa1457450:intron | 55.0% |
| AATGTGGCAGCTGCACAGCA+AGG | + | tig0038897:11419-11438 | Msa1457450:CDS | 55.0% | |
| !! | CTCTGGTGAAGGTGTTCAGC+AGG | + | tig0038897:11588-11607 | Msa1457450:CDS | 55.0% |
| ATGCTTTCGGGCTCCCTTCT+CGG | - | tig0038897:11830-11849 | Msa1457450:intergenic | 55.0% | |
| GTCACCTCTCGGATGCTTTC+GGG | - | tig0038897:11842-11861 | Msa1457450:intergenic | 55.0% | |
| !! | GAAGGCTGGAAGTGTCACAG+AGG | + | tig0038897:12364-12383 | Msa1457450:CDS | 55.0% |
| CCATAGACCTAGAGCCCGTT+TGG | - | tig0038897:13319-13338 | Msa1457450:intergenic | 55.0% | |
| !! | CCAAACGGGCTCTAGGTCTA+TGG | + | tig0038897:13316-13335 | Msa1457450:intron | 55.0% |
| TACTGGTGCTCGGGGATTAC+GGG | + | tig0038897:13592-13611 | Msa1457450:CDS | 55.0% | |
| TGAAGACTCCGTTGGAGGTG+AGG | + | tig0038897:14260-14279 | Msa1457450:CDS | 55.0% | |
| CACTGAAGCCTCACCTCCAA+CGG | - | tig0038897:14271-14290 | Msa1457450:intergenic | 55.0% | |
| CGAATGCACCCCTGCCATAA+AGG | - | tig0038897:14308-14327 | Msa1457450:intergenic | 55.0% | |
| !! | GGAGGTTTCTGGTGGTGATC+AGG | + | tig0038897:14453-14472 | Msa1457450:CDS | 55.0% |
| CGAGTTTGCGGTTGCGGGAA+GGG | - | tig0038897:8885-8904 | Msa1457450:intergenic | 60.0% | |
| TCGAGTTTGCGGTTGCGGGA+AGG | - | tig0038897:8886-8905 | Msa1457450:intergenic | 60.0% | |
| ACGCAGCAGCAGCAGCCATA+GGG | - | tig0038897:9049-9068 | Msa1457450:intergenic | 60.0% | |
| AACGCAGCAGCAGCAGCCAT+AGG | - | tig0038897:9050-9069 | Msa1457450:intergenic | 60.0% | |
| AAACCCCTTTCTCTCCGCGG+CGG | + | tig0038897:9212-9231 | Msa1457450:CDS | 60.0% | |
| !! | GTTTCTGGTGGTGGTGGTGG+AGG | + | tig0038897:9434-9453 | Msa1457450:CDS | 60.0% |
| !! | GGTAGTGGTGCTGCTAGCTC+CGG | + | tig0038897:9461-9480 | Msa1457450:CDS | 60.0% |
| GCTGCTAGCTCCGGTGATTC+GGG | + | tig0038897:9470-9489 | Msa1457450:CDS | 60.0% | |
| CTGCTAGCTCCGGTGATTCG+GGG | + | tig0038897:9471-9490 | Msa1457450:CDS | 60.0% | |
| ! | GGGAAGGGGTCCCACCATTT+TGG | - | tig0038897:11076-11095 | Msa1457450:intergenic | 60.0% |
| TGCTTTCGGGCTCCCTTCTC+GGG | - | tig0038897:11829-11848 | Msa1457450:intergenic | 60.0% | |
| GGAGGTGAGGCTTCAGTGAG+AGG | + | tig0038897:14273-14292 | Msa1457450:CDS | 60.0% | |
| CTCCGACCCGTTCTTCTCCT+TGG | - | tig0038897:14343-14362 | Msa1457450:intergenic | 60.0% | |
| CAAGGAGAAGAACGGGTCGG+AGG | + | tig0038897:14341-14360 | Msa1457450:CDS | 60.0% | |
| ATCGCCGCCGCGGAGAGAAA+GGG | - | tig0038897:9219-9238 | Msa1457450:intergenic | 65.0% | |
| AATCGCCGCCGCGGAGAGAA+AGG | - | tig0038897:9220-9239 | Msa1457450:intergenic | 65.0% | |
| !! | TCTGGTGGTGGTGGTGGAGG+AGG | + | tig0038897:9437-9456 | Msa1457450:CDS | 65.0% |
| !! | GGTGGTGGAGGAGGTGGTAG+TGG | + | tig0038897:9446-9465 | Msa1457450:CDS | 65.0% |
| CATACGCAGGGTCCGGGAAG+GGG | - | tig0038897:11090-11109 | Msa1457450:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | - | tig0038897:11091-11110 | Msa1457450:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | + | tig0038897:11090-11109 | Msa1457450:intron | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | + | tig0038897:11091-11110 | Msa1457450:intron | 65.0% | |
| !! | GGAGCCCGAAAGCATCCGAG+AGG | + | tig0038897:11835-11854 | Msa1457450:CDS | 65.0% |
| TCGCCGCCGCGGAGAGAAAG+GGG | - | tig0038897:9218-9237 | Msa1457450:intergenic | 70.0% | |
| !! | GGTGGTGGTGGTGGAGGAGG+TGG | + | tig0038897:9440-9459 | Msa1457450:CDS | 70.0% |
| CGCATACGCAGGGTCCGGGA+AGG | - | tig0038897:11092-11111 | Msa1457450:intergenic | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | - | tig0038897:11096-11115 | Msa1457450:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | - | tig0038897:11097-11116 | Msa1457450:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0038897 | gene | 8775 | 14897 | 8775 | ID=Msa1457450;Name=Msa1457450 |
| tig0038897 | mRNA | 8775 | 14897 | 8775 | ID=Msa1457450-mRNA-1;Parent=Msa1457450;Name=Msa1457450-mRNA-1;_AED=0.07;_eAED=0.07;_QI=275|0.84|0.85|1|0.84|0.85|14|381|576 |
| tig0038897 | exon | 8775 | 9663 | 8775 | ID=Msa1457450-mRNA-1:exon:21136;Parent=Msa1457450-mRNA-1 |
| tig0038897 | exon | 9787 | 9893 | 9787 | ID=Msa1457450-mRNA-1:exon:21137;Parent=Msa1457450-mRNA-1 |
| tig0038897 | exon | 10222 | 10305 | 10222 | ID=Msa1457450-mRNA-1:exon:21138;Parent=Msa1457450-mRNA-1 |
| tig0038897 | exon | 10835 | 10866 | 10835 | ID=Msa1457450-mRNA-1:exon:21139;Parent=Msa1457450-mRNA-1 |
| tig0038897 | exon | 11407 | 11481 | 11407 | ID=Msa1457450-mRNA-1:exon:21140;Parent=Msa1457450-mRNA-1 |
| tig0038897 | exon | 11559 | 11636 | 11559 | ID=Msa1457450-mRNA-1:exon:21141;Parent=Msa1457450-mRNA-1 |
| tig0038897 | exon | 11814 | 11870 | 11814 | ID=Msa1457450-mRNA-1:exon:21142;Parent=Msa1457450-mRNA-1 |
| tig0038897 | exon | 12152 | 12222 | 12152 | ID=Msa1457450-mRNA-1:exon:21143;Parent=Msa1457450-mRNA-1 |
| tig0038897 | exon | 12316 | 12415 | 12316 | ID=Msa1457450-mRNA-1:exon:21144;Parent=Msa1457450-mRNA-1 |
| tig0038897 | exon | 12520 | 12624 | 12520 | ID=Msa1457450-mRNA-1:exon:21145;Parent=Msa1457450-mRNA-1 |
| tig0038897 | exon | 12971 | 13033 | 12971 | ID=Msa1457450-mRNA-1:exon:21146;Parent=Msa1457450-mRNA-1 |
| tig0038897 | exon | 13530 | 13652 | 13530 | ID=Msa1457450-mRNA-1:exon:21147;Parent=Msa1457450-mRNA-1 |
| tig0038897 | exon | 14210 | 14362 | 14210 | ID=Msa1457450-mRNA-1:exon:21148;Parent=Msa1457450-mRNA-1 |
| tig0038897 | exon | 14448 | 14897 | 14448 | ID=Msa1457450-mRNA-1:exon:21149;Parent=Msa1457450-mRNA-1 |
| tig0038897 | five_prime_UTR | 8775 | 9049 | 8775 | ID=Msa1457450-mRNA-1:five_prime_utr;Parent=Msa1457450-mRNA-1 |
| tig0038897 | CDS | 9050 | 9663 | 9050 | ID=Msa1457450-mRNA-1:cds;Parent=Msa1457450-mRNA-1 |
| tig0038897 | CDS | 9787 | 9893 | 9787 | ID=Msa1457450-mRNA-1:cds;Parent=Msa1457450-mRNA-1 |
| tig0038897 | CDS | 10222 | 10305 | 10222 | ID=Msa1457450-mRNA-1:cds;Parent=Msa1457450-mRNA-1 |
| tig0038897 | CDS | 10835 | 10866 | 10835 | ID=Msa1457450-mRNA-1:cds;Parent=Msa1457450-mRNA-1 |
| tig0038897 | CDS | 11407 | 11481 | 11407 | ID=Msa1457450-mRNA-1:cds;Parent=Msa1457450-mRNA-1 |
| tig0038897 | CDS | 11559 | 11636 | 11559 | ID=Msa1457450-mRNA-1:cds;Parent=Msa1457450-mRNA-1 |
| tig0038897 | CDS | 11814 | 11870 | 11814 | ID=Msa1457450-mRNA-1:cds;Parent=Msa1457450-mRNA-1 |
| tig0038897 | CDS | 12152 | 12222 | 12152 | ID=Msa1457450-mRNA-1:cds;Parent=Msa1457450-mRNA-1 |
| tig0038897 | CDS | 12316 | 12415 | 12316 | ID=Msa1457450-mRNA-1:cds;Parent=Msa1457450-mRNA-1 |
| tig0038897 | CDS | 12520 | 12624 | 12520 | ID=Msa1457450-mRNA-1:cds;Parent=Msa1457450-mRNA-1 |
| tig0038897 | CDS | 12971 | 13033 | 12971 | ID=Msa1457450-mRNA-1:cds;Parent=Msa1457450-mRNA-1 |
| tig0038897 | CDS | 13530 | 13652 | 13530 | ID=Msa1457450-mRNA-1:cds;Parent=Msa1457450-mRNA-1 |
| tig0038897 | CDS | 14210 | 14362 | 14210 | ID=Msa1457450-mRNA-1:cds;Parent=Msa1457450-mRNA-1 |
| tig0038897 | CDS | 14448 | 14516 | 14448 | ID=Msa1457450-mRNA-1:cds;Parent=Msa1457450-mRNA-1 |
| tig0038897 | three_prime_UTR | 14517 | 14897 | 14517 | ID=Msa1457450-mRNA-1:three_prime_utr;Parent=Msa1457450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
