Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1242600 | XP_013445298.1 | 95.078 | 386 | 16 | 1 | 1 | 386 | 1 | 383 | 0.0 | 712 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1242600 | sp|P05100|3MG1_ECOLI | 40.556 | 180 | 103 | 2 | 198 | 375 | 2 | 179 | 1.39e-47 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0606160 | Msa1242600 | 0.813464 | 2.526090e-51 | -8.615850e-47 |
| Msa0647130 | Msa1242600 | 0.801267 | 9.761711e-49 | -8.615850e-47 |
| Msa1242600 | Msa1284300 | 0.883813 | 3.263668e-71 | -8.615850e-47 |
| Msa1242600 | Msa1323670 | 0.911314 | 6.993071e-83 | -8.615850e-47 |
| Msa1242600 | Msa1414320 | 0.807191 | 5.701630e-50 | -8.615850e-47 |
| Msa1188630 | Msa1242600 | 0.876321 | 1.532105e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1242600 | MtrunA17_Chr8g0356301 | 95.078 | 386 | 16 | 1 | 1 | 386 | 1 | 383 | 0.0 | 712 |
| Msa1242600 | MtrunA17_Chr2g0309681 | 74.559 | 397 | 82 | 6 | 1 | 386 | 1 | 389 | 0.0 | 555 |
| Msa1242600 | MtrunA17_Chr4g0073991 | 51.064 | 188 | 90 | 1 | 197 | 382 | 147 | 334 | 1.44e-69 | 223 |
| Msa1242600 | MtrunA17_Chr5g0420791 | 47.150 | 193 | 100 | 1 | 195 | 385 | 109 | 301 | 3.02e-68 | 218 |
| Msa1242600 | MtrunA17_Chr4g0001371 | 48.677 | 189 | 95 | 1 | 197 | 383 | 136 | 324 | 1.05e-67 | 218 |
| Msa1242600 | MtrunA17_Chr8g0366071 | 47.236 | 199 | 100 | 2 | 192 | 385 | 110 | 308 | 6.55e-67 | 214 |
| Msa1242600 | MtrunA17_Chr3g0141411 | 49.735 | 189 | 92 | 2 | 198 | 383 | 128 | 316 | 3.12e-65 | 211 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1242600 | AT3G12710.1 | 68.727 | 275 | 68 | 5 | 114 | 385 | 50 | 309 | 1.42e-131 | 380 |
| Msa1242600 | AT5G44680.1 | 51.289 | 388 | 151 | 6 | 1 | 386 | 1 | 352 | 9.89e-130 | 377 |
| Msa1242600 | AT1G75090.1 | 51.309 | 191 | 91 | 1 | 195 | 383 | 116 | 306 | 9.15e-73 | 230 |
| Msa1242600 | AT1G80850.1 | 54.839 | 186 | 82 | 1 | 198 | 381 | 134 | 319 | 4.38e-72 | 228 |
| Msa1242600 | AT5G57970.1 | 52.632 | 190 | 86 | 2 | 197 | 383 | 153 | 341 | 1.16e-70 | 225 |
| Msa1242600 | AT5G57970.2 | 52.632 | 190 | 86 | 2 | 197 | 383 | 153 | 341 | 1.16e-70 | 225 |
| Msa1242600 | AT1G13635.2 | 46.919 | 211 | 109 | 2 | 178 | 385 | 94 | 304 | 1.48e-69 | 221 |
| Msa1242600 | AT1G13635.1 | 46.919 | 211 | 109 | 2 | 178 | 385 | 94 | 304 | 1.48e-69 | 221 |
| Msa1242600 | AT1G15970.1 | 50.532 | 188 | 91 | 1 | 198 | 383 | 145 | 332 | 4.54e-68 | 219 |
| Msa1242600 | AT1G15970.2 | 50.532 | 188 | 91 | 1 | 198 | 383 | 145 | 332 | 4.54e-68 | 219 |
Find 84 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAGGTCTTCCATTGATTT+TGG | 0.179487 | 8_2:+26938923 | None:intergenic |
| TTTAGTTAAAGGTGAGTTTA+AGG | 0.190916 | 8_2:-26935549 | Msa1242600:three_prime_UTR |
| TGAAGAAACGTCAGAATTTC+AGG | 0.191617 | 8_2:-26937202 | Msa1242600:intron |
| CTCTTTGTTGCTGGTGGTCT+TGG | 0.216304 | 8_2:+26938753 | None:intergenic |
| GAAATCTTTGTTAAATTTCT+TGG | 0.238097 | 8_2:+26938681 | None:intergenic |
| ACAAATGTTGTCTATTAGTT+TGG | 0.247258 | 8_2:-26936852 | Msa1242600:CDS |
| TTCTATGCCTACTTTGGTCT+TGG | 0.263306 | 8_2:+26938980 | None:intergenic |
| GAATTTCTTCTTTCAAGATT+TGG | 0.263831 | 8_2:+26938876 | None:intergenic |
| GATGGTAGTGAAAGTGATTT+TGG | 0.282834 | 8_2:+26938837 | None:intergenic |
| CGGTGGTGTTGATGAAGTTT+TGG | 0.294946 | 8_2:+26938797 | None:intergenic |
| ATGTCTTCACTGGAATCTTA+TGG | 0.298466 | 8_2:+26936014 | None:intergenic |
| AAAATGAAGATTGCTCATTA+TGG | 0.312266 | 8_2:-26938510 | Msa1242600:CDS |
| AACTTGTATTGTGTGGAAAT+AGG | 0.315120 | 8_2:+26936040 | None:intergenic |
| ATAGAGGAGTATAGTGATAA+TGG | 0.321928 | 8_2:+26939036 | None:intergenic |
| TCATTGACTCTCTTTGTTGC+TGG | 0.326408 | 8_2:+26938744 | None:intergenic |
| AGAATTTAATGCTGCAACTT+TGG | 0.328525 | 8_2:-26936891 | Msa1242600:CDS |
| ACATGATCAGAAGAGGCTTT+AGG | 0.331121 | 8_2:-26935967 | Msa1242600:CDS |
| CTCTCTGAATTACCTGAATT+AGG | 0.352616 | 8_2:+26938378 | None:intergenic |
| GGTCTTGGTGACTTTAACTT+TGG | 0.357782 | 8_2:+26938768 | None:intergenic |
| ATTTCCACACAATACAAGTT+TGG | 0.362445 | 8_2:-26936037 | Msa1242600:CDS |
| GTTCATTTGATAAATACATA+TGG | 0.363388 | 8_2:-26936081 | Msa1242600:CDS |
| AAGGTGAAATTGTTTATGTT+TGG | 0.366207 | 8_2:-26935530 | Msa1242600:three_prime_UTR |
| TTCTCATCAGCATGACAATA+AGG | 0.369609 | 8_2:+26935853 | None:intergenic |
| ATCATGATAAGCAATATAGA+TGG | 0.377489 | 8_2:+26937431 | None:intergenic |
| AGAAGAGGCTTTAGGTTTGT+AGG | 0.383881 | 8_2:-26935959 | Msa1242600:CDS |
| TTACAAGTTGGTTGAAGAAC+AGG | 0.385259 | 8_2:+26938906 | None:intergenic |
| GACTTTAACTTTGGTGAAAT+CGG | 0.387954 | 8_2:+26938777 | None:intergenic |
| GATTCACCAGGGAGTATTGC+TGG | 0.388205 | 8_2:-26938573 | Msa1242600:CDS |
| AGCTTTATTACACCTAATTC+AGG | 0.412359 | 8_2:-26938390 | Msa1242600:intron |
| CTGACGTTTCTTCAAGATTG+AGG | 0.413643 | 8_2:+26937211 | None:intergenic |
| ATGTAGTAAGTGTGTGTGTT+TGG | 0.417601 | 8_2:-26935638 | Msa1242600:three_prime_UTR |
| AAAGAGAAGGTAAGAGATGA+AGG | 0.419210 | 8_2:+26939076 | None:intergenic |
| TGCTTATCATGATGAGGAAT+GGG | 0.420107 | 8_2:-26937421 | Msa1242600:CDS |
| TTCATTTGATAAATACATAT+GGG | 0.421482 | 8_2:-26936080 | Msa1242600:CDS |
| CATTTGTTTATCAGTTAAGT+TGG | 0.449241 | 8_2:+26936868 | None:intergenic |
| ACTTACTTGTCATCATGAAC+TGG | 0.454154 | 8_2:+26937393 | None:intergenic |
| GTTGGAAGTGGTGGTGATGA+TGG | 0.454983 | 8_2:+26938819 | None:intergenic |
| TCACCTGTTGCCAAAATCAA+TGG | 0.455608 | 8_2:-26938933 | Msa1242600:CDS |
| TTTGAAATAAGATTGTTTGA+AGG | 0.459190 | 8_2:+26938441 | None:intergenic |
| AGAGATGAAGGATGAGATGA+GGG | 0.474465 | 8_2:+26939088 | None:intergenic |
| TTACAGGTTAACAAGGACTT+TGG | 0.477182 | 8_2:-26936103 | Msa1242600:intron |
| CATTCGTTTATGCAAGCAGC+TGG | 0.483851 | 8_2:-26935923 | Msa1242600:CDS |
| TGTGCTTTCTATGCCTACTT+TGG | 0.484066 | 8_2:+26938974 | None:intergenic |
| TGATGTGTATAATATTAGAT+AGG | 0.485658 | 8_2:-26935786 | Msa1242600:three_prime_UTR |
| TTGACTCTCTTTGTTGCTGG+TGG | 0.490510 | 8_2:+26938747 | None:intergenic |
| TGAAGGATGAGATGAGGGGT+TGG | 0.495544 | 8_2:+26939093 | None:intergenic |
| GAAGAGGCTTTAGGTTTGTA+GGG | 0.499476 | 8_2:-26935958 | Msa1242600:CDS |
| TTGCTTATCATGATGAGGAA+TGG | 0.509036 | 8_2:-26937422 | Msa1242600:CDS |
| CAGGGAGTATTGCTGGGTTG+AGG | 0.510793 | 8_2:-26938566 | Msa1242600:CDS |
| AAGAGATGAAGGATGAGATG+AGG | 0.511684 | 8_2:+26939087 | None:intergenic |
| AGTCAAAGAGTTTGAAAGAA+GGG | 0.533649 | 8_2:-26938647 | Msa1242600:CDS |
| GTGCTCAAGTTGGATCTGAT+TGG | 0.533668 | 8_2:-26937235 | Msa1242600:CDS |
| TTTGGAACTCTGTTACAAGT+TGG | 0.544819 | 8_2:+26938894 | None:intergenic |
| ATTGACATAAGCAGAGTTCG+AGG | 0.548905 | 8_2:-26936821 | Msa1242600:CDS |
| GTTTATTGACAGTTTGAGTG+TGG | 0.550766 | 8_2:-26935723 | Msa1242600:three_prime_UTR |
| AAGTCAAAGAGTTTGAAAGA+AGG | 0.556152 | 8_2:-26938648 | Msa1242600:CDS |
| ATTCACCAGGGAGTATTGCT+GGG | 0.560011 | 8_2:-26938572 | Msa1242600:CDS |
| TGCAGCTCCAAGACCAAAGT+AGG | 0.560303 | 8_2:-26938987 | Msa1242600:CDS |
| AGGTGCATTTCAAGTGGCTG+TGG | 0.567532 | 8_2:+26935873 | None:intergenic |
| AGCAAAGACATGATCAGAAG+AGG | 0.567539 | 8_2:-26935974 | Msa1242600:CDS |
| CTCAACCCAGCAATACTCCC+TGG | 0.568245 | 8_2:+26938567 | None:intergenic |
| AGTTTGAAAGAAGGGTCTTG+TGG | 0.570144 | 8_2:-26938639 | Msa1242600:CDS |
| ATGAATGATATCAAAAGAGA+AGG | 0.571721 | 8_2:+26939063 | None:intergenic |
| GCAAGTGATTAAGTGGTCAT+TGG | 0.573542 | 8_2:+26935895 | None:intergenic |
| GGCTGTGGCAAGTGATTAAG+TGG | 0.581468 | 8_2:+26935888 | None:intergenic |
| TCATTTGATAAATACATATG+GGG | 0.581577 | 8_2:-26936079 | Msa1242600:CDS |
| TCATGATAAGCAATATAGAT+GGG | 0.591991 | 8_2:+26937432 | None:intergenic |
| GGCAACAGGTGATGTAGCTG+TGG | 0.595305 | 8_2:+26938944 | None:intergenic |
| CTATATTGCTTATCATGATG+AGG | 0.598338 | 8_2:-26937427 | Msa1242600:CDS |
| TGGGTTGAGGAGAGAACAGA+TGG | 0.601519 | 8_2:-26938553 | Msa1242600:CDS |
| AATTTGATCACTGATTCACC+AGG | 0.605594 | 8_2:-26938585 | Msa1242600:CDS |
| TAGGTTTGTAGGGCCAACAG+TGG | 0.605848 | 8_2:-26935948 | Msa1242600:CDS |
| AGATTGTTTGAAGGATCAAG+AGG | 0.610434 | 8_2:+26938450 | None:intergenic |
| TGATTAAGTGGTCATTGGTG+AGG | 0.631169 | 8_2:+26935900 | None:intergenic |
| ATGGCCAAACTTGTATTGTG+TGG | 0.631469 | 8_2:+26936033 | None:intergenic |
| GTTATATTTACAGGTTAACA+AGG | 0.634646 | 8_2:-26936110 | Msa1242600:intron |
| GAGATGAAGGATGAGATGAG+GGG | 0.635403 | 8_2:+26939089 | None:intergenic |
| ATAAACGAATGAACCACTGT+TGG | 0.637839 | 8_2:+26935935 | None:intergenic |
| ACAATAAGGTGCATTTCAAG+TGG | 0.639984 | 8_2:+26935867 | None:intergenic |
| TTTAACTTTGGTGAAATCGG+TGG | 0.667130 | 8_2:+26938780 | None:intergenic |
| AGGGTCTTGTGGTTCTACTG+AGG | 0.671323 | 8_2:-26938628 | Msa1242600:CDS |
| TGGCATTGCAGCATGCTCAG+AGG | 0.687303 | 8_2:-26938533 | Msa1242600:CDS |
| ATTTGATCACTGATTCACCA+GGG | 0.698236 | 8_2:-26938584 | Msa1242600:CDS |
| GCTTATCATGATGAGGAATG+GGG | 0.724849 | 8_2:-26937420 | Msa1242600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTAAAGAAAAAAAATAT+GGG | + | chr8_2:26936806-26936825 | None:intergenic | 10.0% |
| !!! | ATTTCTAAAGAAAAAAAATA+TGG | + | chr8_2:26936807-26936826 | None:intergenic | 10.0% |
| !! | ACTAAATTAAATAAGAATAT+AGG | + | chr8_2:26936839-26936858 | None:intergenic | 10.0% |
| !! | AATTTAGTAATAGAATAAAT+AGG | - | chr8_2:26936851-26936870 | Msa1242600:CDS | 10.0% |
| !! | ATTTAGTAATAGAATAAATA+GGG | - | chr8_2:26936852-26936871 | Msa1242600:CDS | 10.0% |
| !! | TATTATTTAATTGATAAAAG+TGG | + | chr8_2:26936950-26936969 | None:intergenic | 10.0% |
| !!! | ATTCAATCAAAAATTAATTT+TGG | + | chr8_2:26938935-26938954 | None:intergenic | 10.0% |
| !! | TTATTTCAAAAACAAATGAA+GGG | - | chr8_2:26936111-26936130 | Msa1242600:intron | 15.0% |
| !!! | CAAATTTTGTTAACTATTAT+TGG | - | chr8_2:26936199-26936218 | Msa1242600:intron | 15.0% |
| !!! | TTTCCTTATTTATTTTTTGT+TGG | - | chr8_2:26936585-26936604 | Msa1242600:intron | 15.0% |
| !! | ATTCCAACAAAAAATAAATA+AGG | + | chr8_2:26936591-26936610 | None:intergenic | 15.0% |
| !! | TTCATTTGATAAATACATAT+GGG | - | chr8_2:26938459-26938478 | Msa1242600:CDS | 15.0% |
| !!! | GTAAAATTGATTTTAGTTAT+TGG | - | chr8_2:26938961-26938980 | Msa1242600:CDS | 15.0% |
| !!! | GATTTTTTAAGAAAGAATAG+AGG | + | chr8_2:26935522-26935541 | None:intergenic | 20.0% |
| !! | GAAATCTTTGTTAAATTTCT+TGG | + | chr8_2:26935861-26935880 | None:intergenic | 20.0% |
| !!! | TTTGAAATAAGATTGTTTGA+AGG | + | chr8_2:26936101-26936120 | None:intergenic | 20.0% |
| !! | CTTATTTCAAAAACAAATGA+AGG | - | chr8_2:26936110-26936129 | Msa1242600:intron | 20.0% |
| !! | TATTTCAAAAACAAATGAAG+GGG | - | chr8_2:26936112-26936131 | Msa1242600:intron | 20.0% |
| !!! | AATAGTTGGCAAATTTTAAT+TGG | + | chr8_2:26936542-26936561 | None:intergenic | 20.0% |
| !!! | TTGTTGGAATGTATATTTTT+TGG | - | chr8_2:26936601-26936620 | Msa1242600:intron | 20.0% |
| !!! | TGTTGGAATGTATATTTTTT+GGG | - | chr8_2:26936602-26936621 | Msa1242600:intron | 20.0% |
| !! | ATCTTGAACATAATTAGTTA+TGG | - | chr8_2:26936974-26936993 | Msa1242600:intron | 20.0% |
| !! | AACATAATTAGTTATGGAAT+TGG | - | chr8_2:26936980-26936999 | Msa1242600:intron | 20.0% |
| !! | ACATAATTAGTTATGGAATT+GGG | - | chr8_2:26936981-26937000 | Msa1242600:intron | 20.0% |
| !! | TGTCTAAAAATAAAAGAAGT+GGG | + | chr8_2:26937016-26937035 | None:intergenic | 20.0% |
| !! | ATGTCTAAAAATAAAAGAAG+TGG | + | chr8_2:26937017-26937036 | None:intergenic | 20.0% |
| !! | TAATAAAAAGAGACACATAT+TGG | + | chr8_2:26937080-26937099 | None:intergenic | 20.0% |
| !!! | GGACTAATAAATTATTTTAC+AGG | - | chr8_2:26937614-26937633 | Msa1242600:intron | 20.0% |
| !! | AATTAAAATCTCAATCTTGT+CGG | + | chr8_2:26938106-26938125 | None:intergenic | 20.0% |
| !! | TTAATATTCTCTCTGTAAAT+TGG | - | chr8_2:26938403-26938422 | Msa1242600:CDS | 20.0% |
| !! | TTGTTAACCTGTAAATATAA+CGG | + | chr8_2:26938430-26938449 | None:intergenic | 20.0% |
| !! | GTTCATTTGATAAATACATA+TGG | - | chr8_2:26938458-26938477 | Msa1242600:CDS | 20.0% |
| !! | TCATTTGATAAATACATATG+GGG | - | chr8_2:26938460-26938479 | Msa1242600:CDS | 20.0% |
| !! | TGATGTGTATAATATTAGAT+AGG | - | chr8_2:26938753-26938772 | Msa1242600:CDS | 20.0% |
| !! | AGATAGGAACAAAAAAAAAT+TGG | - | chr8_2:26938769-26938788 | Msa1242600:CDS | 20.0% |
| !! | TAGAAAGAAGAAAAAAGTTT+AGG | - | chr8_2:26938874-26938893 | Msa1242600:CDS | 20.0% |
| ! | ATGAATGATATCAAAAGAGA+AGG | + | chr8_2:26935479-26935498 | None:intergenic | 25.0% |
| ! | GAATTTCTTCTTTCAAGATT+TGG | + | chr8_2:26935666-26935685 | None:intergenic | 25.0% |
| ! | AAAATGAAGATTGCTCATTA+TGG | - | chr8_2:26936029-26936048 | Msa1242600:CDS | 25.0% |
| !! | GATTAGTTATCAGAAAAATC+AGG | + | chr8_2:26936239-26936258 | None:intergenic | 25.0% |
| !!! | CGAAGAATATATTTTTAGCT+AGG | - | chr8_2:26936264-26936283 | Msa1242600:intron | 25.0% |
| !!! | CCTATTTTTCAAGAAATAGT+TGG | + | chr8_2:26936556-26936575 | None:intergenic | 25.0% |
| !! | CCAACTATTTCTTGAAAAAT+AGG | - | chr8_2:26936553-26936572 | Msa1242600:intron | 25.0% |
| ! | TTAATATCGAAATCATGCAT+TGG | - | chr8_2:26936664-26936683 | Msa1242600:intron | 25.0% |
| ! | TAATATCGAAATCATGCATT+GGG | - | chr8_2:26936665-26936684 | Msa1242600:intron | 25.0% |
| ! | TTGATAAAAGTGGTTATCAT+AGG | + | chr8_2:26936940-26936959 | None:intergenic | 25.0% |
| ! | CATAATTAGTTATGGAATTG+GGG | - | chr8_2:26936982-26937001 | Msa1242600:intron | 25.0% |
| ! | TCATGATAAGCAATATAGAT+GGG | + | chr8_2:26937110-26937129 | None:intergenic | 25.0% |
| ! | ATCATGATAAGCAATATAGA+TGG | + | chr8_2:26937111-26937130 | None:intergenic | 25.0% |
| !!! | TTTGAACTTCTAGTTTTAAG+TGG | - | chr8_2:26937282-26937301 | Msa1242600:intron | 25.0% |
| ! | ATAATTTGAGAAAACAGAAG+TGG | + | chr8_2:26937475-26937494 | None:intergenic | 25.0% |
| !!! | TATGTACTTTTTTCAGAATG+TGG | - | chr8_2:26937591-26937610 | Msa1242600:intron | 25.0% |
| !!! | ATGTACTTTTTTCAGAATGT+GGG | - | chr8_2:26937592-26937611 | Msa1242600:intron | 25.0% |
| ! | CATTTGTTTATCAGTTAAGT+TGG | + | chr8_2:26937674-26937693 | None:intergenic | 25.0% |
| ! | ACAAATGTTGTCTATTAGTT+TGG | - | chr8_2:26937687-26937706 | Msa1242600:intron | 25.0% |
| !! | TAATGCTAATCGAATTTTAG+AGG | - | chr8_2:26937750-26937769 | Msa1242600:intron | 25.0% |
| ! | GCATATTATGATATTATAGC+TGG | - | chr8_2:26937828-26937847 | Msa1242600:intron | 25.0% |
| ! | GAGAATATAGTTCAAAATTG+CGG | + | chr8_2:26937926-26937945 | None:intergenic | 25.0% |
| !! | TCTTTGTTATAGTTGAAGTA+AGG | + | chr8_2:26938053-26938072 | None:intergenic | 25.0% |
| ! | ATTAAAATCTCAATCTTGTC+GGG | + | chr8_2:26938105-26938124 | None:intergenic | 25.0% |
| ! | AGAGATCAAACAGAATATAT+GGG | + | chr8_2:26938135-26938154 | None:intergenic | 25.0% |
| ! | TAGAGATCAAACAGAATATA+TGG | + | chr8_2:26938136-26938155 | None:intergenic | 25.0% |
| ! | AAACAAATATGAAATGTACC+TGG | - | chr8_2:26938327-26938346 | Msa1242600:intron | 25.0% |
| ! | GTTATATTTACAGGTTAACA+AGG | - | chr8_2:26938429-26938448 | Msa1242600:CDS | 25.0% |
| !!! | ATTGGTGAGATTTTAGTTAA+AGG | - | chr8_2:26938979-26938998 | Msa1242600:CDS | 25.0% |
| ! | TTTAGTTAAAGGTGAGTTTA+AGG | - | chr8_2:26938990-26939009 | Msa1242600:CDS | 25.0% |
| ! | AAGGTGAAATTGTTTATGTT+TGG | - | chr8_2:26939009-26939028 | Msa1242600:exon | 25.0% |
| ! | ATAGAGGAGTATAGTGATAA+TGG | + | chr8_2:26935506-26935525 | None:intergenic | 30.0% |
| ! | GACTTTAACTTTGGTGAAAT+CGG | + | chr8_2:26935765-26935784 | None:intergenic | 30.0% |
| AAGTCAAAGAGTTTGAAAGA+AGG | - | chr8_2:26935891-26935910 | Msa1242600:CDS | 30.0% | |
| AGTCAAAGAGTTTGAAAGAA+GGG | - | chr8_2:26935892-26935911 | Msa1242600:CDS | 30.0% | |
| !! | AGCTTTATTACACCTAATTC+AGG | - | chr8_2:26936149-26936168 | Msa1242600:intron | 30.0% |
| ! | GATTTATTGACTGATTGATG+AGG | - | chr8_2:26936892-26936911 | Msa1242600:CDS | 30.0% |
| CTATATTGCTTATCATGATG+AGG | - | chr8_2:26937112-26937131 | Msa1242600:intron | 30.0% | |
| !!! | TGTACTTTTTTCAGAATGTG+GGG | - | chr8_2:26937593-26937612 | Msa1242600:intron | 30.0% |
| AGAATTTAATGCTGCAACTT+TGG | - | chr8_2:26937648-26937667 | Msa1242600:intron | 30.0% | |
| !! | TTATAGCTGGTTCTAAATTG+TGG | - | chr8_2:26937841-26937860 | Msa1242600:intron | 30.0% |
| GTAGAATGTTCACTAAAAAC+AGG | + | chr8_2:26937962-26937981 | None:intergenic | 30.0% | |
| GAGATCAAACAGAATATATG+GGG | + | chr8_2:26938134-26938153 | None:intergenic | 30.0% | |
| ! | ATAAGTGAGATCGAGATTTT+AGG | + | chr8_2:26938177-26938196 | None:intergenic | 30.0% |
| AATTGGTCCGTTATATTTAC+AGG | - | chr8_2:26938420-26938439 | Msa1242600:CDS | 30.0% | |
| AACTTGTATTGTGTGGAAAT+AGG | + | chr8_2:26938502-26938521 | None:intergenic | 30.0% | |
| ATTTCCACACAATACAAGTT+TGG | - | chr8_2:26938502-26938521 | Msa1242600:CDS | 30.0% | |
| ! | TTTTCTTAGTTATGAGTGTG+AGG | - | chr8_2:26938792-26938811 | Msa1242600:CDS | 30.0% |
| AAAGAGAAGGTAAGAGATGA+AGG | + | chr8_2:26935466-26935485 | None:intergenic | 35.0% | |
| !!! | AACAGGTCTTCCATTGATTT+TGG | + | chr8_2:26935619-26935638 | None:intergenic | 35.0% |
| !! | TTACAAGTTGGTTGAAGAAC+AGG | + | chr8_2:26935636-26935655 | None:intergenic | 35.0% |
| ! | TTTGGAACTCTGTTACAAGT+TGG | + | chr8_2:26935648-26935667 | None:intergenic | 35.0% |
| !! | GATGGTAGTGAAAGTGATTT+TGG | + | chr8_2:26935705-26935724 | None:intergenic | 35.0% |
| ! | TTTAACTTTGGTGAAATCGG+TGG | + | chr8_2:26935762-26935781 | None:intergenic | 35.0% |
| !! | AATTTGATCACTGATTCACC+AGG | - | chr8_2:26935954-26935973 | Msa1242600:CDS | 35.0% |
| !! | ATTTGATCACTGATTCACCA+GGG | - | chr8_2:26935955-26935974 | Msa1242600:CDS | 35.0% |
| AGATTGTTTGAAGGATCAAG+AGG | + | chr8_2:26936092-26936111 | None:intergenic | 35.0% | |
| TTCAAAAACAAATGAAGGGG+AGG | - | chr8_2:26936115-26936134 | Msa1242600:intron | 35.0% | |
| CTCTCTGAATTACCTGAATT+AGG | + | chr8_2:26936164-26936183 | None:intergenic | 35.0% | |
| TGTGACTGAAAAATAGGAAG+TGG | - | chr8_2:26936503-26936522 | Msa1242600:intron | 35.0% | |
| TTGCTTATCATGATGAGGAA+TGG | - | chr8_2:26937117-26937136 | Msa1242600:intron | 35.0% | |
| TGCTTATCATGATGAGGAAT+GGG | - | chr8_2:26937118-26937137 | Msa1242600:intron | 35.0% | |
| ACTTACTTGTCATCATGAAC+TGG | + | chr8_2:26937149-26937168 | None:intergenic | 35.0% | |
| GTATGATGAGAAAGAGAAGT+GGG | + | chr8_2:26937173-26937192 | None:intergenic | 35.0% | |
| TGTATGATGAGAAAGAGAAG+TGG | + | chr8_2:26937174-26937193 | None:intergenic | 35.0% | |
| ! | AAAAATGCTTTTGCACATGC+AGG | - | chr8_2:26937253-26937272 | Msa1242600:CDS | 35.0% |
| TGAAGAAACGTCAGAATTTC+AGG | - | chr8_2:26937337-26937356 | Msa1242600:intron | 35.0% | |
| TCAGACACATCATAAAGTGT+CGG | + | chr8_2:26937393-26937412 | None:intergenic | 35.0% | |
| TATCAATACCGTGTTAGTGT+TGG | + | chr8_2:26937435-26937454 | None:intergenic | 35.0% | |
| ATGAAATGTACCTGGAGTAT+TGG | - | chr8_2:26938335-26938354 | Msa1242600:intron | 35.0% | |
| ! | TGAAATGTACCTGGAGTATT+GGG | - | chr8_2:26938336-26938355 | Msa1242600:intron | 35.0% |
| TTACAGGTTAACAAGGACTT+TGG | - | chr8_2:26938436-26938455 | Msa1242600:CDS | 35.0% | |
| ATGTCTTCACTGGAATCTTA+TGG | + | chr8_2:26938528-26938547 | None:intergenic | 35.0% | |
| !! | TCTGATTTTGATGTCTTCAC+TGG | + | chr8_2:26938538-26938557 | None:intergenic | 35.0% |
| ATAAACGAATGAACCACTGT+TGG | + | chr8_2:26938607-26938626 | None:intergenic | 35.0% | |
| ACAATAAGGTGCATTTCAAG+TGG | + | chr8_2:26938675-26938694 | None:intergenic | 35.0% | |
| TTCTCATCAGCATGACAATA+AGG | + | chr8_2:26938689-26938708 | None:intergenic | 35.0% | |
| GTTTATTGACAGTTTGAGTG+TGG | - | chr8_2:26938816-26938835 | Msa1242600:CDS | 35.0% | |
| ATGTAGTAAGTGTGTGTGTT+TGG | - | chr8_2:26938901-26938920 | Msa1242600:CDS | 35.0% | |
| AGAGATGAAGGATGAGATGA+GGG | + | chr8_2:26935454-26935473 | None:intergenic | 40.0% | |
| AAGAGATGAAGGATGAGATG+AGG | + | chr8_2:26935455-26935474 | None:intergenic | 40.0% | |
| TTCTATGCCTACTTTGGTCT+TGG | + | chr8_2:26935562-26935581 | None:intergenic | 40.0% | |
| TGTGCTTTCTATGCCTACTT+TGG | + | chr8_2:26935568-26935587 | None:intergenic | 40.0% | |
| TCACCTGTTGCCAAAATCAA+TGG | - | chr8_2:26935606-26935625 | Msa1242600:three_prime_UTR | 40.0% | |
| !!! | CTTCCATTGATTTTGGCAAC+AGG | + | chr8_2:26935612-26935631 | None:intergenic | 40.0% |
| ! | GGTAGTGAAAGTGATTTTGG+TGG | + | chr8_2:26935702-26935721 | None:intergenic | 40.0% |
| !!! | GATGAAGTTTTGGTTGGAAG+TGG | + | chr8_2:26935735-26935754 | None:intergenic | 40.0% |
| !!! | GGTGTTGATGAAGTTTTGGT+TGG | + | chr8_2:26935741-26935760 | None:intergenic | 40.0% |
| ! | GGTCTTGGTGACTTTAACTT+TGG | + | chr8_2:26935774-26935793 | None:intergenic | 40.0% |
| !! | TCATTGACTCTCTTTGTTGC+TGG | + | chr8_2:26935798-26935817 | None:intergenic | 40.0% |
| AGTTTGAAAGAAGGGTCTTG+TGG | - | chr8_2:26935900-26935919 | Msa1242600:CDS | 40.0% | |
| !! | CGACTCAGACTTTTTAAGCA+AGG | + | chr8_2:26936321-26936340 | None:intergenic | 40.0% |
| GGCAAATAGTGCATTGTGAT+TGG | + | chr8_2:26936469-26936488 | None:intergenic | 40.0% | |
| GCACTATTTGCCACAATTCA+AGG | - | chr8_2:26936477-26936496 | Msa1242600:intron | 40.0% | |
| CTATTTGCCACAATTCAAGG+AGG | - | chr8_2:26936480-26936499 | Msa1242600:intron | 40.0% | |
| ! | AGGAGGTGTGACTGAAAAAT+AGG | - | chr8_2:26936497-26936516 | Msa1242600:intron | 40.0% |
| AAATACTAGCTAGTGCCCTA+AGG | - | chr8_2:26936625-26936644 | Msa1242600:intron | 40.0% | |
| AATACTAGCTAGTGCCCTAA+GGG | - | chr8_2:26936626-26936645 | Msa1242600:intron | 40.0% | |
| CTTCTTAACCATTGCCCTTA+GGG | + | chr8_2:26936643-26936662 | None:intergenic | 40.0% | |
| TCTTCTTAACCATTGCCCTT+AGG | + | chr8_2:26936644-26936663 | None:intergenic | 40.0% | |
| TATCCTTAACCATTGCCCTT+AGG | - | chr8_2:26936765-26936784 | Msa1242600:intron | 40.0% | |
| ATCCTTAACCATTGCCCTTA+GGG | - | chr8_2:26936766-26936785 | Msa1242600:intron | 40.0% | |
| ! | TTTTGCTAACCAGTCCCTAA+GGG | + | chr8_2:26936783-26936802 | None:intergenic | 40.0% |
| GCTTATCATGATGAGGAATG+GGG | - | chr8_2:26937119-26937138 | Msa1242600:intron | 40.0% | |
| !! | GTTTTAAGTGGTGCTCAAGT+TGG | - | chr8_2:26937294-26937313 | Msa1242600:intron | 40.0% |
| CTGACGTTTCTTCAAGATTG+AGG | + | chr8_2:26937331-26937350 | None:intergenic | 40.0% | |
| ! | GAAACGTCAGAATTTCAGGT+TGG | - | chr8_2:26937341-26937360 | Msa1242600:intron | 40.0% |
| GTTTGACACCAACACTAACA+CGG | - | chr8_2:26937424-26937443 | Msa1242600:CDS | 40.0% | |
| ! | GACAGTGTAGGTATTGTGTT+TGG | - | chr8_2:26937514-26937533 | Msa1242600:intron | 40.0% |
| ATTGACATAAGCAGAGTTCG+AGG | - | chr8_2:26937718-26937737 | Msa1242600:intron | 40.0% | |
| AGACCAAGTAGAGGAACAAA+AGG | + | chr8_2:26937797-26937816 | None:intergenic | 40.0% | |
| AAAAGTGAGAGACCAAGTAG+AGG | + | chr8_2:26937806-26937825 | None:intergenic | 40.0% | |
| !! | CTGGTTCTAAATTGTGGTTG+CGG | - | chr8_2:26937847-26937866 | Msa1242600:intron | 40.0% |
| CAAACAGAATATATGGGGTC+AGG | + | chr8_2:26938129-26938148 | None:intergenic | 40.0% | |
| GATCTCACTTATGTGACTTG+TGG | - | chr8_2:26938185-26938204 | Msa1242600:intron | 40.0% | |
| ATGTGACATGTGTCACATTG+TGG | + | chr8_2:26938236-26938255 | None:intergenic | 40.0% | |
| ATGTGACACATGTCACATTG+TGG | - | chr8_2:26938238-26938257 | Msa1242600:intron | 40.0% | |
| ATTCCACTTGTGTGACATTG+TGG | + | chr8_2:26938290-26938309 | None:intergenic | 40.0% | |
| !! | GAAATGTACCTGGAGTATTG+GGG | - | chr8_2:26938337-26938356 | Msa1242600:intron | 40.0% |
| ATGGCCAAACTTGTATTGTG+TGG | + | chr8_2:26938509-26938528 | None:intergenic | 40.0% | |
| AGCAAAGACATGATCAGAAG+AGG | - | chr8_2:26938565-26938584 | Msa1242600:CDS | 40.0% | |
| ACATGATCAGAAGAGGCTTT+AGG | - | chr8_2:26938572-26938591 | Msa1242600:CDS | 40.0% | |
| !! | AGAAGAGGCTTTAGGTTTGT+AGG | - | chr8_2:26938580-26938599 | Msa1242600:CDS | 40.0% |
| !! | GAAGAGGCTTTAGGTTTGTA+GGG | - | chr8_2:26938581-26938600 | Msa1242600:CDS | 40.0% |
| TGATTAAGTGGTCATTGGTG+AGG | + | chr8_2:26938642-26938661 | None:intergenic | 40.0% | |
| GCAAGTGATTAAGTGGTCAT+TGG | + | chr8_2:26938647-26938666 | None:intergenic | 40.0% | |
| GAGATGAAGGATGAGATGAG+GGG | + | chr8_2:26935453-26935472 | None:intergenic | 45.0% | |
| ! | CTTGGAGCTGCACATTTTGT+TGG | + | chr8_2:26935544-26935563 | None:intergenic | 45.0% |
| !!! | GAAGTTTTGGTTGGAAGTGG+TGG | + | chr8_2:26935732-26935751 | None:intergenic | 45.0% |
| !!! | CGGTGGTGTTGATGAAGTTT+TGG | + | chr8_2:26935745-26935764 | None:intergenic | 45.0% |
| TTGACTCTCTTTGTTGCTGG+TGG | + | chr8_2:26935795-26935814 | None:intergenic | 45.0% | |
| !! | ATTCACCAGGGAGTATTGCT+GGG | - | chr8_2:26935967-26935986 | Msa1242600:CDS | 45.0% |
| CAAGGTCTCAAATTCGAGTC+TGG | + | chr8_2:26936303-26936322 | None:intergenic | 45.0% | |
| AGTCACACCTCCTTGAATTG+TGG | + | chr8_2:26936490-26936509 | None:intergenic | 45.0% | |
| ! | GTTTTGCTAACCAGTCCCTA+AGG | + | chr8_2:26936784-26936803 | None:intergenic | 45.0% |
| !! | GTGCTCAAGTTGGATCTGAT+TGG | - | chr8_2:26937304-26937323 | Msa1242600:intron | 45.0% |
| ! | AGTAGAGGAACAAAAGGCAC+AGG | + | chr8_2:26937791-26937810 | None:intergenic | 45.0% |
| ! | GTGCCTTTTGTTCCTCTACT+TGG | - | chr8_2:26937791-26937810 | Msa1242600:intron | 45.0% |
| TGACATGTGTCACATTGTGG+TGG | + | chr8_2:26938233-26938252 | None:intergenic | 45.0% | |
| CATTCGTTTATGCAAGCAGC+TGG | - | chr8_2:26938616-26938635 | Msa1242600:CDS | 45.0% | |
| TGAAGGATGAGATGAGGGGT+TGG | + | chr8_2:26935449-26935468 | None:intergenic | 50.0% | |
| TGCAGCTCCAAGACCAAAGT+AGG | - | chr8_2:26935552-26935571 | Msa1242600:three_prime_UTR | 50.0% | |
| ! | GTTGGAAGTGGTGGTGATGA+TGG | + | chr8_2:26935723-26935742 | None:intergenic | 50.0% |
| CTCTTTGTTGCTGGTGGTCT+TGG | + | chr8_2:26935789-26935808 | None:intergenic | 50.0% | |
| ! | AGGGTCTTGTGGTTCTACTG+AGG | - | chr8_2:26935911-26935930 | Msa1242600:CDS | 50.0% |
| !! | GATTCACCAGGGAGTATTGC+TGG | - | chr8_2:26935966-26935985 | Msa1242600:CDS | 50.0% |
| ! | TGGGTTGAGGAGAGAACAGA+TGG | - | chr8_2:26935986-26936005 | Msa1242600:CDS | 50.0% |
| GTCCCTAAGGGCAATGGTTA+AGG | + | chr8_2:26936771-26936790 | None:intergenic | 50.0% | |
| TAACCATTGCCCTTAGGGAC+TGG | - | chr8_2:26936771-26936790 | Msa1242600:intron | 50.0% | |
| TAACCAGTCCCTAAGGGCAA+TGG | + | chr8_2:26936777-26936796 | None:intergenic | 50.0% | |
| CACTGTCACTGAGACAGACA+CGG | + | chr8_2:26937501-26937520 | None:intergenic | 50.0% | |
| GTCTGTCTCAGTGACAGTGT+AGG | - | chr8_2:26937502-26937521 | Msa1242600:intron | 50.0% | |
| !! | GTGTCACATTGTGGTGGACA+AGG | + | chr8_2:26938227-26938246 | None:intergenic | 50.0% |
| CACTTGTGTGACATTGTGGC+GGG | + | chr8_2:26938286-26938305 | None:intergenic | 50.0% | |
| CCACTTGTGTGACATTGTGG+CGG | + | chr8_2:26938287-26938306 | None:intergenic | 50.0% | |
| !! | AGAGAGTACCCCAATACTCC+AGG | + | chr8_2:26938348-26938367 | None:intergenic | 50.0% |
| TAGGTTTGTAGGGCCAACAG+TGG | - | chr8_2:26938591-26938610 | Msa1242600:CDS | 50.0% | |
| GGCTGTGGCAAGTGATTAAG+TGG | + | chr8_2:26938654-26938673 | None:intergenic | 50.0% | |
| ! | AGGTGCATTTCAAGTGGCTG+TGG | + | chr8_2:26938669-26938688 | None:intergenic | 50.0% |
| GGCAACAGGTGATGTAGCTG+TGG | + | chr8_2:26935598-26935617 | None:intergenic | 55.0% | |
| CTCAACCCAGCAATACTCCC+TGG | + | chr8_2:26935975-26935994 | None:intergenic | 55.0% | |
| !! | CAGGGAGTATTGCTGGGTTG+AGG | - | chr8_2:26935973-26935992 | Msa1242600:CDS | 55.0% |
| TGGCATTGCAGCATGCTCAG+AGG | - | chr8_2:26936006-26936025 | Msa1242600:CDS | 55.0% | |
| AGCTAGTGCCCTAAGGGCAA+TGG | - | chr8_2:26936632-26936651 | Msa1242600:intron | 55.0% | |
| CCGCCACAATGTCACACAAG+TGG | - | chr8_2:26938284-26938303 | Msa1242600:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 26935446 | 26939115 | 26935446 | ID=Msa1242600;Name=Msa1242600 |
| chr8_2 | mRNA | 26935446 | 26939115 | 26935446 | ID=Msa1242600-mRNA-1;Parent=Msa1242600;Name=Msa1242600-mRNA-1;_AED=0.15;_eAED=0.15;_QI=103|1|1|1|1|1|5|413|386 |
| chr8_2 | exon | 26935446 | 26936119 | 26935446 | ID=Msa1242600-mRNA-1:exon:9493;Parent=Msa1242600-mRNA-1 |
| chr8_2 | exon | 26936790 | 26936925 | 26936790 | ID=Msa1242600-mRNA-1:exon:9492;Parent=Msa1242600-mRNA-1 |
| chr8_2 | exon | 26937203 | 26937286 | 26937203 | ID=Msa1242600-mRNA-1:exon:9491;Parent=Msa1242600-mRNA-1 |
| chr8_2 | exon | 26937399 | 26937456 | 26937399 | ID=Msa1242600-mRNA-1:exon:9490;Parent=Msa1242600-mRNA-1 |
| chr8_2 | exon | 26938391 | 26939115 | 26938391 | ID=Msa1242600-mRNA-1:exon:9489;Parent=Msa1242600-mRNA-1 |
| chr8_2 | five_prime_UTR | 26939013 | 26939115 | 26939013 | ID=Msa1242600-mRNA-1:five_prime_utr;Parent=Msa1242600-mRNA-1 |
| chr8_2 | CDS | 26938391 | 26939012 | 26938391 | ID=Msa1242600-mRNA-1:cds;Parent=Msa1242600-mRNA-1 |
| chr8_2 | CDS | 26937399 | 26937456 | 26937399 | ID=Msa1242600-mRNA-1:cds;Parent=Msa1242600-mRNA-1 |
| chr8_2 | CDS | 26937203 | 26937286 | 26937203 | ID=Msa1242600-mRNA-1:cds;Parent=Msa1242600-mRNA-1 |
| chr8_2 | CDS | 26936790 | 26936925 | 26936790 | ID=Msa1242600-mRNA-1:cds;Parent=Msa1242600-mRNA-1 |
| chr8_2 | CDS | 26935859 | 26936119 | 26935859 | ID=Msa1242600-mRNA-1:cds;Parent=Msa1242600-mRNA-1 |
| chr8_2 | three_prime_UTR | 26935446 | 26935858 | 26935446 | ID=Msa1242600-mRNA-1:three_prime_utr;Parent=Msa1242600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
